0.027871 0.000000 0.000000 0.000000 0.023849 0.000000 0.000000 0.000000 0.006079 0.00000 0.00000 0.00000 Lamoureux, J.S. Stuart, D. Tsang, R. Wu, C. Glover, J.N.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 35.880 41.930 164.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Embo J. EMJODG 0897 0261-4189 21 5721 5732 10.1093/emboj/cdf572 12411490 Structure of the sporulation-specific transcription factor Ndt80 bound to DNA 2002 10.2210/pdb1mn4/pdb pdb_00001mn4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 105 1 bent cylindrical Si-mirror (Rh coating) CCD 2002-05-21 ADSC QUANTUM 4 Si(111) double-crystal MAD M x-ray 1 0.9563 1.0 14-BM-D APS 0.9563 SYNCHROTRON APS BEAMLINE 14-BM-D 32385.701 NDT80 PROTEIN DNA-binding core (Residues 59-340) 1 man polymer 18.015 water 89 nat water no no STLQFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGFDHIDEEWVGYKRSYFTLVSTFETANCDLDTFLKSSFDLL VEDSSVEGRLRVQYFAIKIKAKNDDDDTEINLVQHTAKRDKGPQFCPSVCPLVPSPLPKHQIIREASNVRNITKMKKYDS TFYLHRDHVNYEEYGVDSLLFSYPEDSIQKVARYERVQFASSISVKKPSQQNKHFSLHVILGAVVDPDTFHGENPGIPYD ELALKNGSKGMFVYLQEMKTPPLIIRGRSPSNYASSQRITVR STLQFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGFDHIDEEWVGYKRSYFTLVSTFETANCDLDTFLKSSFDLL VEDSSVEGRLRVQYFAIKIKAKNDDDDTEINLVQHTAKRDKGPQFCPSVCPLVPSPLPKHQIIREASNVRNITKMKKYDS TFYLHRDHVNYEEYGVDSLLFSYPEDSIQKVARYERVQFASSISVKKPSQQNKHFSLHVILGAVVDPDTFHGENPGIPYD ELALKNGSKGMFVYLQEMKTPPLIIRGRSPSNYASSQRITVR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample NDT80 4932 Saccharomyces cerevisiae 511693 Escherichia coli BL21 BL21 PLASMID pGEX-6P1 1 1.91 35.58 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 4000, sodium acetate, magnesium chloride, spermine, 20mer DNA, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2002-11-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2002-09-04 REL REL HOH water HOH 1 2 HOH HOH 341 A HOH 2 2 HOH HOH 342 A HOH 3 2 HOH HOH 343 A HOH 4 2 HOH HOH 344 A HOH 5 2 HOH HOH 345 A HOH 6 2 HOH HOH 346 A HOH 7 2 HOH HOH 347 A HOH 8 2 HOH HOH 348 A HOH 9 2 HOH HOH 349 A HOH 10 2 HOH HOH 350 A HOH 12 2 HOH HOH 351 A HOH 13 2 HOH HOH 352 A HOH 14 2 HOH HOH 353 A HOH 17 2 HOH HOH 354 A HOH 18 2 HOH HOH 355 A HOH 19 2 HOH HOH 356 A HOH 20 2 HOH HOH 357 A HOH 22 2 HOH HOH 358 A HOH 23 2 HOH HOH 359 A HOH 24 2 HOH HOH 360 A HOH 25 2 HOH HOH 361 A HOH 26 2 HOH HOH 362 A HOH 30 2 HOH HOH 363 A HOH 32 2 HOH HOH 364 A HOH 35 2 HOH HOH 365 A HOH 37 2 HOH HOH 366 A HOH 38 2 HOH HOH 367 A HOH 40 2 HOH HOH 368 A HOH 41 2 HOH HOH 369 A HOH 42 2 HOH HOH 370 A HOH 43 2 HOH HOH 371 A HOH 44 2 HOH HOH 372 A HOH 47 2 HOH HOH 373 A HOH 48 2 HOH HOH 374 A HOH 49 2 HOH HOH 375 A HOH 50 2 HOH HOH 376 A HOH 51 2 HOH HOH 377 A HOH 52 2 HOH HOH 378 A HOH 53 2 HOH HOH 379 A HOH 59 2 HOH HOH 380 A HOH 60 2 HOH HOH 381 A HOH 62 2 HOH HOH 382 A HOH 70 2 HOH HOH 383 A HOH 73 2 HOH HOH 384 A HOH 87 2 HOH HOH 385 A HOH 88 2 HOH HOH 386 A HOH 89 2 HOH HOH 387 A HOH 90 2 HOH HOH 388 A HOH 93 2 HOH HOH 389 A HOH 94 2 HOH HOH 390 A HOH 95 2 HOH HOH 391 A HOH 96 2 HOH HOH 392 A HOH 100 2 HOH HOH 393 A HOH 105 2 HOH HOH 394 A HOH 106 2 HOH HOH 395 A HOH 107 2 HOH HOH 396 A HOH 110 2 HOH HOH 397 A HOH 117 2 HOH HOH 398 A HOH 120 2 HOH HOH 399 A HOH 127 2 HOH HOH 400 A HOH 130 2 HOH HOH 401 A HOH 131 2 HOH HOH 402 A HOH 134 2 HOH HOH 403 A HOH 136 2 HOH HOH 404 A HOH 139 2 HOH HOH 405 A HOH 144 2 HOH HOH 406 A HOH 152 2 HOH HOH 407 A HOH 157 2 HOH HOH 408 A HOH 160 2 HOH HOH 409 A HOH 161 2 HOH HOH 410 A HOH 178 2 HOH HOH 411 A HOH 181 2 HOH HOH 412 A HOH 185 2 HOH HOH 413 A HOH 187 2 HOH HOH 414 A HOH 239 2 HOH HOH 415 A HOH 241 2 HOH HOH 416 A HOH 242 2 HOH HOH 417 A HOH 243 2 HOH HOH 418 A HOH 245 2 HOH HOH 419 A HOH 250 2 HOH HOH 420 A HOH 252 2 HOH HOH 421 A HOH 253 2 HOH HOH 422 A HOH 256 2 HOH HOH 423 A HOH 270 2 HOH HOH 424 A HOH 271 2 HOH HOH 425 A HOH 274 2 HOH HOH 426 A HOH 279 2 HOH HOH 427 A HOH 282 2 HOH HOH 428 A HOH 283 2 HOH HOH 429 A n 1 59 A n 2 60 A n 3 61 A n 4 62 A PHE 63 n 5 PHE 63 A LYS 64 n 6 LYS 64 A VAL 65 n 7 VAL 65 A GLY 66 n 8 GLY 66 A PRO 67 n 9 PRO 67 A PRO 68 n 10 PRO 68 A PHE 69 n 11 PHE 69 A GLU 70 n 12 GLU 70 A LEU 71 n 13 LEU 71 A VAL 72 n 14 VAL 72 A ARG 73 n 15 ARG 73 A ASP 74 n 16 ASP 74 A TYR 75 n 17 TYR 75 A CYS 76 n 18 CYS 76 A PRO 77 n 19 PRO 77 A VAL 78 n 20 VAL 78 A VAL 79 n 21 VAL 79 A GLU 80 n 22 GLU 80 A SER 81 n 23 SER 81 A HIS 82 n 24 HIS 82 A THR 83 n 25 THR 83 A GLY 84 n 26 GLY 84 A ARG 85 n 27 ARG 85 A THR 86 n 28 THR 86 A LEU 87 n 29 LEU 87 A ASP 88 n 30 ASP 88 A LEU 89 n 31 LEU 89 A ARG 90 n 32 ARG 90 A ILE 91 n 33 ILE 91 A ILE 92 n 34 ILE 92 A PRO 93 n 35 PRO 93 A ARG 94 n 36 ARG 94 A ILE 95 n 37 ILE 95 A ASP 96 n 38 ASP 96 A ARG 97 n 39 ARG 97 A GLY 98 n 40 GLY 98 A PHE 99 n 41 PHE 99 A ASP 100 n 42 ASP 100 A HIS 101 n 43 HIS 101 A ILE 102 n 44 ILE 102 A ASP 103 n 45 ASP 103 A GLU 104 n 46 GLU 104 A GLU 105 n 47 GLU 105 A TRP 106 n 48 TRP 106 A VAL 107 n 49 VAL 107 A GLY 108 n 50 GLY 108 A TYR 109 n 51 TYR 109 A LYS 110 n 52 LYS 110 A ARG 111 n 53 ARG 111 A SER 112 n 54 SER 112 A TYR 113 n 55 TYR 113 A PHE 114 n 56 PHE 114 A THR 115 n 57 THR 115 A LEU 116 n 58 LEU 116 A VAL 117 n 59 VAL 117 A SER 118 n 60 SER 118 A THR 119 n 61 THR 119 A PHE 120 n 62 PHE 120 A GLU 121 n 63 GLU 121 A THR 122 n 64 THR 122 A ALA 123 n 65 ALA 123 A ASN 124 n 66 ASN 124 A CYS 125 n 67 CYS 125 A ASP 126 n 68 ASP 126 A LEU 127 n 69 LEU 127 A ASP 128 n 70 ASP 128 A THR 129 n 71 THR 129 A PHE 130 n 72 PHE 130 A LEU 131 n 73 LEU 131 A LYS 132 n 74 LYS 132 A SER 133 n 75 SER 133 A SER 134 n 76 SER 134 A PHE 135 n 77 PHE 135 A ASP 136 n 78 ASP 136 A LEU 137 n 79 LEU 137 A LEU 138 n 80 LEU 138 A VAL 139 n 81 VAL 139 A GLU 140 n 82 GLU 140 A ASP 141 n 83 ASP 141 A SER 142 n 84 SER 142 A SER 143 n 85 SER 143 A VAL 144 n 86 VAL 144 A GLU 145 n 87 GLU 145 A GLY 146 n 88 GLY 146 A ARG 147 n 89 ARG 147 A LEU 148 n 90 LEU 148 A ARG 149 n 91 ARG 149 A VAL 150 n 92 VAL 150 A GLN 151 n 93 GLN 151 A TYR 152 n 94 TYR 152 A PHE 153 n 95 PHE 153 A ALA 154 n 96 ALA 154 A ILE 155 n 97 ILE 155 A LYS 156 n 98 LYS 156 A ILE 157 n 99 ILE 157 A LYS 158 n 100 LYS 158 A ALA 159 n 101 ALA 159 A LYS 160 n 102 LYS 160 A ASN 161 n 103 ASN 161 A ASP 162 n 104 ASP 162 A ASP 163 n 105 ASP 163 A ASP 164 n 106 ASP 164 A ASP 165 n 107 ASP 165 A THR 166 n 108 THR 166 A GLU 167 n 109 GLU 167 A ILE 168 n 110 ILE 168 A ASN 169 n 111 ASN 169 A LEU 170 n 112 LEU 170 A VAL 171 n 113 VAL 171 A GLN 172 n 114 GLN 172 A HIS 173 n 115 HIS 173 A THR 174 n 116 THR 174 A n 117 175 A n 118 176 A n 119 177 A n 120 178 A n 121 179 A n 122 180 A n 123 181 A n 124 182 A n 125 183 A n 126 184 A PRO 185 n 127 PRO 185 A SER 186 n 128 SER 186 A VAL 187 n 129 VAL 187 A CYS 188 n 130 CYS 188 A PRO 189 n 131 PRO 189 A LEU 190 n 132 LEU 190 A VAL 191 n 133 VAL 191 A PRO 192 n 134 PRO 192 A SER 193 n 135 SER 193 A PRO 194 n 136 PRO 194 A LEU 195 n 137 LEU 195 A PRO 196 n 138 PRO 196 A LYS 197 n 139 LYS 197 A HIS 198 n 140 HIS 198 A GLN 199 n 141 GLN 199 A ILE 200 n 142 ILE 200 A ILE 201 n 143 ILE 201 A ARG 202 n 144 ARG 202 A GLU 203 n 145 GLU 203 A ALA 204 n 146 ALA 204 A SER 205 n 147 SER 205 A ASN 206 n 148 ASN 206 A VAL 207 n 149 VAL 207 A ARG 208 n 150 ARG 208 A ASN 209 n 151 ASN 209 A ILE 210 n 152 ILE 210 A THR 211 n 153 THR 211 A LYS 212 n 154 LYS 212 A MET 213 n 155 MET 213 A LYS 214 n 156 LYS 214 A LYS 215 n 157 LYS 215 A TYR 216 n 158 TYR 216 A ASP 217 n 159 ASP 217 A SER 218 n 160 SER 218 A THR 219 n 161 THR 219 A PHE 220 n 162 PHE 220 A TYR 221 n 163 TYR 221 A LEU 222 n 164 LEU 222 A HIS 223 n 165 HIS 223 A ARG 224 n 166 ARG 224 A ASP 225 n 167 ASP 225 A HIS 226 n 168 HIS 226 A VAL 227 n 169 VAL 227 A ASN 228 n 170 ASN 228 A TYR 229 n 171 TYR 229 A GLU 230 n 172 GLU 230 A GLU 231 n 173 GLU 231 A TYR 232 n 174 TYR 232 A GLY 233 n 175 GLY 233 A VAL 234 n 176 VAL 234 A ASP 235 n 177 ASP 235 A SER 236 n 178 SER 236 A LEU 237 n 179 LEU 237 A LEU 238 n 180 LEU 238 A PHE 239 n 181 PHE 239 A SER 240 n 182 SER 240 A TYR 241 n 183 TYR 241 A PRO 242 n 184 PRO 242 A GLU 243 n 185 GLU 243 A ASP 244 n 186 ASP 244 A SER 245 n 187 SER 245 A ILE 246 n 188 ILE 246 A GLN 247 n 189 GLN 247 A LYS 248 n 190 LYS 248 A VAL 249 n 191 VAL 249 A ALA 250 n 192 ALA 250 A ARG 251 n 193 ARG 251 A TYR 252 n 194 TYR 252 A GLU 253 n 195 GLU 253 A ARG 254 n 196 ARG 254 A VAL 255 n 197 VAL 255 A GLN 256 n 198 GLN 256 A PHE 257 n 199 PHE 257 A ALA 258 n 200 ALA 258 A SER 259 n 201 SER 259 A SER 260 n 202 SER 260 A ILE 261 n 203 ILE 261 A SER 262 n 204 SER 262 A VAL 263 n 205 VAL 263 A LYS 264 n 206 LYS 264 A LYS 265 n 207 LYS 265 A PRO 266 n 208 PRO 266 A SER 267 n 209 SER 267 A GLN 268 n 210 GLN 268 A GLN 269 n 211 GLN 269 A ASN 270 n 212 ASN 270 A LYS 271 n 213 LYS 271 A HIS 272 n 214 HIS 272 A PHE 273 n 215 PHE 273 A SER 274 n 216 SER 274 A LEU 275 n 217 LEU 275 A HIS 276 n 218 HIS 276 A VAL 277 n 219 VAL 277 A ILE 278 n 220 ILE 278 A LEU 279 n 221 LEU 279 A GLY 280 n 222 GLY 280 A ALA 281 n 223 ALA 281 A VAL 282 n 224 VAL 282 A VAL 283 n 225 VAL 283 A ASP 284 n 226 ASP 284 A PRO 285 n 227 PRO 285 A ASP 286 n 228 ASP 286 A n 229 287 A n 230 288 A n 231 289 A n 232 290 A n 233 291 A n 234 292 A n 235 293 A GLY 294 n 236 GLY 294 A ILE 295 n 237 ILE 295 A PRO 296 n 238 PRO 296 A TYR 297 n 239 TYR 297 A ASP 298 n 240 ASP 298 A GLU 299 n 241 GLU 299 A LEU 300 n 242 LEU 300 A ALA 301 n 243 ALA 301 A LEU 302 n 244 LEU 302 A LYS 303 n 245 LYS 303 A ASN 304 n 246 ASN 304 A GLY 305 n 247 GLY 305 A SER 306 n 248 SER 306 A LYS 307 n 249 LYS 307 A GLY 308 n 250 GLY 308 A MET 309 n 251 MET 309 A PHE 310 n 252 PHE 310 A VAL 311 n 253 VAL 311 A TYR 312 n 254 TYR 312 A LEU 313 n 255 LEU 313 A GLN 314 n 256 GLN 314 A GLU 315 n 257 GLU 315 A MET 316 n 258 MET 316 A LYS 317 n 259 LYS 317 A THR 318 n 260 THR 318 A PRO 319 n 261 PRO 319 A PRO 320 n 262 PRO 320 A LEU 321 n 263 LEU 321 A ILE 322 n 264 ILE 322 A ILE 323 n 265 ILE 323 A ARG 324 n 266 ARG 324 A GLY 325 n 267 GLY 325 A n 268 326 A n 269 327 A n 270 328 A n 271 329 A n 272 330 A n 273 331 A n 274 332 A n 275 333 A n 276 334 A n 277 335 A n 278 336 A n 279 337 A n 280 338 A n 281 339 A n 282 340 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 300 A O LEU 242 A N GLY 308 A N GLY 250 A O LYS 317 A O LYS 259 A N GLU 70 A N GLU 12 A N VAL 72 A N VAL 14 A O GLU 315 A O GLU 257 A O MET 316 A O MET 258 A N VAL 277 A N VAL 219 A O VAL 282 A O VAL 224 A N GLN 151 A N GLN 93 A O ILE 155 A O ILE 97 A N CYS 188 A N CYS 130 A N CYS 188 A N CYS 130 A O ILE 155 A O ILE 97 A O ALA 159 A O ALA 101 A N ILE 168 A N ILE 110 A N ILE 168 A N ILE 110 A O ALA 159 A O ALA 101 A N VAL 150 A N VAL 92 A O PHE 135 A O PHE 77 A N ASP 136 A N ASP 78 A O VAL 79 A O VAL 21 A N VAL 171 A N VAL 113 A O GLN 256 A O GLN 198 A O VAL 255 A O VAL 197 A N PHE 114 A N PHE 56 A N GLU 121 A N GLU 63 A O ARG 90 A O ARG 32 A O ASP 100 A O ASP 42 A N VAL 107 A N VAL 49 A N GLY 108 A N GLY 50 A O ILE 322 A O ILE 264 1 A CG GLU 104 A CG GLU 46 0 Y 1 A CD GLU 104 A CD GLU 46 0 Y 1 A OE1 GLU 104 A OE1 GLU 46 0 Y 1 A OE2 GLU 104 A OE2 GLU 46 0 Y 1 A CG ARG 208 A CG ARG 150 1 Y 1 A CD ARG 208 A CD ARG 150 1 Y 1 A NE ARG 208 A NE ARG 150 1 Y 1 A CZ ARG 208 A CZ ARG 150 1 Y 1 A NH1 ARG 208 A NH1 ARG 150 1 Y 1 A NH2 ARG 208 A NH2 ARG 150 1 Y 1 A CG ASP 286 A CG ASP 228 1 Y 1 A OD1 ASP 286 A OD1 ASP 228 1 Y 1 A OD2 ASP 286 A OD2 ASP 228 1 Y 1 A SER 59 A SER 1 1 Y 1 A THR 60 A THR 2 1 Y 1 A LEU 61 A LEU 3 1 Y 1 A GLN 62 A GLN 4 1 Y 1 A ALA 175 A ALA 117 1 Y 1 A LYS 176 A LYS 118 1 Y 1 A ARG 177 A ARG 119 1 Y 1 A ASP 178 A ASP 120 1 Y 1 A LYS 179 A LYS 121 1 Y 1 A GLY 180 A GLY 122 1 Y 1 A PRO 181 A PRO 123 1 Y 1 A GLN 182 A GLN 124 1 Y 1 A PHE 183 A PHE 125 1 Y 1 A CYS 184 A CYS 126 1 Y 1 A THR 287 A THR 229 1 Y 1 A PHE 288 A PHE 230 1 Y 1 A HIS 289 A HIS 231 1 Y 1 A GLY 290 A GLY 232 1 Y 1 A GLU 291 A GLU 233 1 Y 1 A ASN 292 A ASN 234 1 Y 1 A PRO 293 A PRO 235 1 Y 1 A ARG 326 A ARG 268 1 Y 1 A SER 327 A SER 269 1 Y 1 A PRO 328 A PRO 270 1 Y 1 A SER 329 A SER 271 1 Y 1 A ASN 330 A ASN 272 1 Y 1 A TYR 331 A TYR 273 1 Y 1 A ALA 332 A ALA 274 1 Y 1 A SER 333 A SER 275 1 Y 1 A SER 334 A SER 276 1 Y 1 A GLN 335 A GLN 277 1 Y 1 A ARG 336 A ARG 278 1 Y 1 A ILE 337 A ILE 279 1 Y 1 A THR 338 A THR 280 1 Y 1 A VAL 339 A VAL 281 1 Y 1 A ARG 340 A ARG 282 1 Y 1 A TYR 75 -107.04 -116.24 1 A ASP 103 28.81 79.43 1 A ASP 141 59.39 -109.03 1 A VAL 144 35.79 20.81 1 A ASP 162 -58.62 -1.32 1 A ASP 163 -102.96 -61.30 1 A SER 193 -176.21 149.72 1 A GLU 203 -48.80 -15.79 1 A SER 205 -58.97 -112.34 1 A ARG 208 -68.15 58.74 1 A ASP 225 -69.29 0.20 1 A ARG 254 51.62 75.52 1 A LEU 302 -53.06 -159.07 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top 5.73 -1.32 -4.41 0 0 0 0.2680000 0.2260000 0.2290000 0.2290000 2.2 14.95 626 13291 13086 98.5 random 1 anisotropic THROUGHOUT 0 0 MAD Engh & Huber 0.27 5.0 0.21 2.2 14.95 89 2078 0 0 1989 0.006 1.3 1.837 1.5 2.290 2 3.177 2 3.524 2.5 14.3 2.2 14.95 1MN4 12530 13292 0 -3 0.0760000 1 20.9 11.7 98.1 2.20 2.25 7.9 0.2210000 5.4 100 data reduction DENZO data scaling SCALEPACK phasing SHARP refinement CNS 1.0 Structure of Ndt80 (Residues 59-340) DNA-binding domain core 1 N N 2 N N A ASP 126 A ASP 68 HELX_P A SER 133 A SER 75 1 1 8 A LYS 197 A LYS 139 HELX_P A SER 205 A SER 147 1 2 9 A ASN 209 A ASN 151 HELX_P A LYS 214 A LYS 156 1 3 6 A TYR 216 A TYR 158 HELX_P A PHE 220 A PHE 162 1 4 5 A ASP 225 A ASP 167 HELX_P A VAL 227 A VAL 169 5 5 3 A ASN 228 A ASN 170 HELX_P A TYR 232 A TYR 174 5 6 5 A SER 236 A SER 178 HELX_P A TYR 241 A TYR 183 5 7 6 TRANSCRIPTION IG FOLD, PROTEIN-DNA COMPLEX, TRANSCRIPTION NDT80_YEAST UNP 1 59 P38830 STLQFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGFDHIDEEWVGYKRNYFTLVSTFETANCDLDTFLKSSFDLL VEDSSVESRLRVQYFAIKIKAKNDDDDTEINLVQHTAKRDKGPQFCPSVCPLVPSPLPKHQIIREASNVRNITKMKKYDS TFYLHRDHVNYEEYGVDSLLFSYPEDSIQKVARYERVQFASSISVKKPSQQNKHFSLHVILGAVVDPDTFHGENPGIPYD ELALKNGSKGMFVYLQEMKTPPLIIRGRSPSNYASSQRITVR 59 340 1MN4 59 340 P38830 A 1 1 282 12 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A TYR 297 A TYR 239 A ALA 301 A ALA 243 A LYS 307 A LYS 249 A LYS 317 A LYS 259 A GLU 70 A GLU 12 A ASP 74 A ASP 16 A LYS 307 A LYS 249 A LYS 317 A LYS 259 A PHE 273 A PHE 215 A VAL 283 A VAL 225 A ARG 147 A ARG 89 A ASN 161 A ASN 103 A CYS 188 A CYS 130 A PRO 189 A PRO 131 A ARG 147 A ARG 89 A ASN 161 A ASN 103 A GLU 167 A GLU 109 A ILE 168 A ILE 110 A ARG 147 A ARG 89 A ASN 161 A ASN 103 A PHE 135 A PHE 77 A LEU 138 A LEU 80 A VAL 78 A VAL 20 A GLU 80 A GLU 22 A LEU 170 A LEU 112 A GLN 172 A GLN 114 A ALA 250 A ALA 192 A PHE 257 A PHE 199 A PHE 114 A PHE 56 A THR 122 A THR 64 A LEU 89 A LEU 31 A ARG 97 A ARG 39 A ASP 100 A ASP 42 A HIS 101 A HIS 43 A TRP 106 A TRP 48 A TYR 109 A TYR 51 A LEU 321 A LEU 263 A ARG 324 A ARG 266 19 P 21 21 21