0.013941 0.008049 0.000000 0.000000 0.016098 0.000000 0.000000 0.000000 0.006501 0.00000 0.00000 0.00000 Gallois-montbrun, S. Chen, Y. Dutartre, H. Morera, S. Guerreiro, C. Mulard, L. Schneider, B. Janin, J. Canard, B. Veron, M. Deville-bonne, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 71.731 71.731 153.818 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C8 H15 N4 O14 P3 484.144 RIBAVIRIN TRIPHOSPHATE RNA linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US MOL.PHARMACOL. MOPMA3 0197 0026-895X 63 538 546 10.1124/mol.63.3.538 12606760 Structural Analysis of the Activation of Ribavirin Analogs by NDP Kinase: Comparison with Other Ribavirin Targets 2003 10.2210/pdb1mn9/pdb pdb_00001mn9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2001-06-10 MARRESEARCH GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.542 1.0 1.542 ROTATING ANODE RIGAKU RU300 16735.242 NDP kinase 2.7.4.6 H122G 3 man polymer 24.305 MAGNESIUM ION 3 syn non-polymer 484.144 RIBAVIRIN TRIPHOSPHATE 3 syn non-polymer 18.015 water 38 nat water Nucleoside diphosphate kinase, cytosolic no no MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Dictyostelium Escherichia sample 44689 Dictyostelium discoideum 562 Escherichia coli 1 2.27 45.91 VAPOR DIFFUSION, HANGING DROP 7.5 PEG 550, Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Derived calculations 1 0 2003-03-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1F3F contains the same protein complexed with D4T-Triphosphate and Mg 1NUE contains human nucleoside diphosphate kinase B complexed with GDP RCSB Y PDBJ 2002-09-05 REL REL MG MAGNESIUM ION RTP RIBAVIRIN TRIPHOSPHATE HOH water MG2 164 2 MG MG 164 A RTP 160 3 RTP RTP 160 A RTP 161 3 RTP RTP 161 A RTP 162 3 RTP RTP 162 A MG2 163 2 MG MG 163 B MG2 165 2 MG MG 165 C HOH 1001 4 HOH HOH 1001 A HOH 1002 4 HOH HOH 1002 A HOH 1003 4 HOH HOH 1003 A HOH 1004 4 HOH HOH 1004 A HOH 1005 4 HOH HOH 1005 A HOH 1016 4 HOH HOH 1016 A HOH 1020 4 HOH HOH 1020 A HOH 1021 4 HOH HOH 1021 A HOH 1023 4 HOH HOH 1023 A HOH 1032 4 HOH HOH 1032 A HOH 1033 4 HOH HOH 1033 A HOH 1036 4 HOH HOH 1036 A HOH 1037 4 HOH HOH 1037 A HOH 1006 4 HOH HOH 1006 B HOH 1007 4 HOH HOH 1007 B HOH 1008 4 HOH HOH 1008 B HOH 1009 4 HOH HOH 1009 B HOH 1013 4 HOH HOH 1013 B HOH 1014 4 HOH HOH 1014 B HOH 1015 4 HOH HOH 1015 B HOH 1017 4 HOH HOH 1017 B HOH 1018 4 HOH HOH 1018 B HOH 1019 4 HOH HOH 1019 B HOH 1022 4 HOH HOH 1022 B HOH 1025 4 HOH HOH 1025 B HOH 1026 4 HOH HOH 1026 B HOH 1028 4 HOH HOH 1028 B HOH 1031 4 HOH HOH 1031 B HOH 1034 4 HOH HOH 1034 B HOH 1035 4 HOH HOH 1035 B HOH 1010 4 HOH HOH 1010 C HOH 1011 4 HOH HOH 1011 C HOH 1012 4 HOH HOH 1012 C HOH 1024 4 HOH HOH 1024 C HOH 1027 4 HOH HOH 1027 C HOH 1029 4 HOH HOH 1029 C HOH 1030 4 HOH HOH 1030 C HOH 1038 4 HOH HOH 1038 C n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A VAL 6 n 6 VAL 6 A ASN 7 n 7 ASN 7 A LYS 8 n 8 LYS 8 A GLU 9 n 9 GLU 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A PHE 12 n 12 PHE 12 A LEU 13 n 13 LEU 13 A ALA 14 n 14 ALA 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A PRO 17 n 17 PRO 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A VAL 20 n 20 VAL 20 A ALA 21 n 21 ALA 21 A ARG 22 n 22 ARG 22 A GLY 23 n 23 GLY 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A GLY 26 n 26 GLY 26 A GLU 27 n 27 GLU 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A ALA 30 n 30 ALA 30 A ARG 31 n 31 ARG 31 A TYR 32 n 32 TYR 32 A GLU 33 n 33 GLU 33 A LYS 34 n 34 LYS 34 A LYS 35 n 35 LYS 35 A GLY 36 n 36 GLY 36 A PHE 37 n 37 PHE 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A VAL 40 n 40 VAL 40 A GLY 41 n 41 GLY 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A GLN 44 n 44 GLN 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A PRO 47 n 47 PRO 47 A THR 48 n 48 THR 48 A LYS 49 n 49 LYS 49 A ASP 50 n 50 ASP 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A SER 54 n 54 SER 54 A HIS 55 n 55 HIS 55 A TYR 56 n 56 TYR 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A HIS 59 n 59 HIS 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A ARG 62 n 62 ARG 62 A PRO 63 n 63 PRO 63 A PHE 64 n 64 PHE 64 A PHE 65 n 65 PHE 65 A GLY 66 n 66 GLY 66 A GLY 67 n 67 GLY 67 A LEU 68 n 68 LEU 68 A VAL 69 n 69 VAL 69 A SER 70 n 70 SER 70 A PHE 71 n 71 PHE 71 A ILE 72 n 72 ILE 72 A THR 73 n 73 THR 73 A SER 74 n 74 SER 74 A GLY 75 n 75 GLY 75 A PRO 76 n 76 PRO 76 A VAL 77 n 77 VAL 77 A VAL 78 n 78 VAL 78 A ALA 79 n 79 ALA 79 A MET 80 n 80 MET 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A GLU 83 n 83 GLU 83 A GLY 84 n 84 GLY 84 A LYS 85 n 85 LYS 85 A GLY 86 n 86 GLY 86 A VAL 87 n 87 VAL 87 A VAL 88 n 88 VAL 88 A ALA 89 n 89 ALA 89 A SER 90 n 90 SER 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A LEU 93 n 93 LEU 93 A MET 94 n 94 MET 94 A ILE 95 n 95 ILE 95 A GLY 96 n 96 GLY 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A ASN 99 n 99 ASN 99 A PRO 100 n 100 PRO 100 A LEU 101 n 101 LEU 101 A ALA 102 n 102 ALA 102 A SER 103 n 103 SER 103 A ALA 104 n 104 ALA 104 A PRO 105 n 105 PRO 105 A GLY 106 n 106 GLY 106 A SER 107 n 107 SER 107 A ILE 108 n 108 ILE 108 A ARG 109 n 109 ARG 109 A GLY 110 n 110 GLY 110 A ASP 111 n 111 ASP 111 A PHE 112 n 112 PHE 112 A GLY 113 n 113 GLY 113 A VAL 114 n 114 VAL 114 A ASP 115 n 115 ASP 115 A VAL 116 n 116 VAL 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A ASN 119 n 119 ASN 119 A ILE 120 n 120 ILE 120 A ILE 121 n 121 ILE 121 A GLY 122 n 122 GLY 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ASP 125 n 125 ASP 125 A SER 126 n 126 SER 126 A VAL 127 n 127 VAL 127 A GLU 128 n 128 GLU 128 A SER 129 n 129 SER 129 A ALA 130 n 130 ALA 130 A ASN 131 n 131 ASN 131 A ARG 132 n 132 ARG 132 A GLU 133 n 133 GLU 133 A ILE 134 n 134 ILE 134 A ALA 135 n 135 ALA 135 A LEU 136 n 136 LEU 136 A TRP 137 n 137 TRP 137 A PHE 138 n 138 PHE 138 A LYS 139 n 139 LYS 139 A PRO 140 n 140 PRO 140 A GLU 141 n 141 GLU 141 A GLU 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A THR 145 n 145 THR 145 A GLU 146 n 146 GLU 146 A VAL 147 n 147 VAL 147 A LYS 148 n 148 LYS 148 A PRO 149 n 149 PRO 149 A ASN 150 n 150 ASN 150 A PRO 151 n 151 PRO 151 A ASN 152 n 152 ASN 152 A LEU 153 n 153 LEU 153 A TYR 154 n 154 TYR 154 A GLU 155 n 155 GLU 155 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B VAL 6 n 6 VAL 6 B ASN 7 n 7 ASN 7 B LYS 8 n 8 LYS 8 B GLU 9 n 9 GLU 9 B ARG 10 n 10 ARG 10 B THR 11 n 11 THR 11 B PHE 12 n 12 PHE 12 B LEU 13 n 13 LEU 13 B ALA 14 n 14 ALA 14 B VAL 15 n 15 VAL 15 B LYS 16 n 16 LYS 16 B PRO 17 n 17 PRO 17 B ASP 18 n 18 ASP 18 B GLY 19 n 19 GLY 19 B VAL 20 n 20 VAL 20 B ALA 21 n 21 ALA 21 B ARG 22 n 22 ARG 22 B GLY 23 n 23 GLY 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B GLY 26 n 26 GLY 26 B GLU 27 n 27 GLU 27 B ILE 28 n 28 ILE 28 B ILE 29 n 29 ILE 29 B ALA 30 n 30 ALA 30 B ARG 31 n 31 ARG 31 B TYR 32 n 32 TYR 32 B GLU 33 n 33 GLU 33 B LYS 34 n 34 LYS 34 B LYS 35 n 35 LYS 35 B GLY 36 n 36 GLY 36 B PHE 37 n 37 PHE 37 B VAL 38 n 38 VAL 38 B LEU 39 n 39 LEU 39 B VAL 40 n 40 VAL 40 B GLY 41 n 41 GLY 41 B LEU 42 n 42 LEU 42 B LYS 43 n 43 LYS 43 B GLN 44 n 44 GLN 44 B LEU 45 n 45 LEU 45 B VAL 46 n 46 VAL 46 B PRO 47 n 47 PRO 47 B THR 48 n 48 THR 48 B LYS 49 n 49 LYS 49 B ASP 50 n 50 ASP 50 B LEU 51 n 51 LEU 51 B ALA 52 n 52 ALA 52 B GLU 53 n 53 GLU 53 B SER 54 n 54 SER 54 B HIS 55 n 55 HIS 55 B TYR 56 n 56 TYR 56 B ALA 57 n 57 ALA 57 B GLU 58 n 58 GLU 58 B HIS 59 n 59 HIS 59 B LYS 60 n 60 LYS 60 B GLU 61 n 61 GLU 61 B ARG 62 n 62 ARG 62 B PRO 63 n 63 PRO 63 B PHE 64 n 64 PHE 64 B PHE 65 n 65 PHE 65 B GLY 66 n 66 GLY 66 B GLY 67 n 67 GLY 67 B LEU 68 n 68 LEU 68 B VAL 69 n 69 VAL 69 B SER 70 n 70 SER 70 B PHE 71 n 71 PHE 71 B ILE 72 n 72 ILE 72 B THR 73 n 73 THR 73 B SER 74 n 74 SER 74 B GLY 75 n 75 GLY 75 B PRO 76 n 76 PRO 76 B VAL 77 n 77 VAL 77 B VAL 78 n 78 VAL 78 B ALA 79 n 79 ALA 79 B MET 80 n 80 MET 80 B VAL 81 n 81 VAL 81 B PHE 82 n 82 PHE 82 B GLU 83 n 83 GLU 83 B GLY 84 n 84 GLY 84 B LYS 85 n 85 LYS 85 B GLY 86 n 86 GLY 86 B VAL 87 n 87 VAL 87 B VAL 88 n 88 VAL 88 B ALA 89 n 89 ALA 89 B SER 90 n 90 SER 90 B ALA 91 n 91 ALA 91 B ARG 92 n 92 ARG 92 B LEU 93 n 93 LEU 93 B MET 94 n 94 MET 94 B ILE 95 n 95 ILE 95 B GLY 96 n 96 GLY 96 B VAL 97 n 97 VAL 97 B THR 98 n 98 THR 98 B ASN 99 n 99 ASN 99 B PRO 100 n 100 PRO 100 B LEU 101 n 101 LEU 101 B ALA 102 n 102 ALA 102 B SER 103 n 103 SER 103 B ALA 104 n 104 ALA 104 B PRO 105 n 105 PRO 105 B GLY 106 n 106 GLY 106 B SER 107 n 107 SER 107 B ILE 108 n 108 ILE 108 B ARG 109 n 109 ARG 109 B GLY 110 n 110 GLY 110 B ASP 111 n 111 ASP 111 B PHE 112 n 112 PHE 112 B GLY 113 n 113 GLY 113 B VAL 114 n 114 VAL 114 B ASP 115 n 115 ASP 115 B VAL 116 n 116 VAL 116 B GLY 117 n 117 GLY 117 B ARG 118 n 118 ARG 118 B ASN 119 n 119 ASN 119 B ILE 120 n 120 ILE 120 B ILE 121 n 121 ILE 121 B GLY 122 n 122 GLY 122 B GLY 123 n 123 GLY 123 B SER 124 n 124 SER 124 B ASP 125 n 125 ASP 125 B SER 126 n 126 SER 126 B VAL 127 n 127 VAL 127 B GLU 128 n 128 GLU 128 B SER 129 n 129 SER 129 B ALA 130 n 130 ALA 130 B ASN 131 n 131 ASN 131 B ARG 132 n 132 ARG 132 B GLU 133 n 133 GLU 133 B ILE 134 n 134 ILE 134 B ALA 135 n 135 ALA 135 B LEU 136 n 136 LEU 136 B TRP 137 n 137 TRP 137 B PHE 138 n 138 PHE 138 B LYS 139 n 139 LYS 139 B PRO 140 n 140 PRO 140 B GLU 141 n 141 GLU 141 B GLU 142 n 142 GLU 142 B LEU 143 n 143 LEU 143 B LEU 144 n 144 LEU 144 B THR 145 n 145 THR 145 B GLU 146 n 146 GLU 146 B VAL 147 n 147 VAL 147 B LYS 148 n 148 LYS 148 B PRO 149 n 149 PRO 149 B ASN 150 n 150 ASN 150 B PRO 151 n 151 PRO 151 B ASN 152 n 152 ASN 152 B LEU 153 n 153 LEU 153 B TYR 154 n 154 TYR 154 B GLU 155 n 155 GLU 155 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C VAL 6 n 6 VAL 6 C ASN 7 n 7 ASN 7 C LYS 8 n 8 LYS 8 C GLU 9 n 9 GLU 9 C ARG 10 n 10 ARG 10 C THR 11 n 11 THR 11 C PHE 12 n 12 PHE 12 C LEU 13 n 13 LEU 13 C ALA 14 n 14 ALA 14 C VAL 15 n 15 VAL 15 C LYS 16 n 16 LYS 16 C PRO 17 n 17 PRO 17 C ASP 18 n 18 ASP 18 C GLY 19 n 19 GLY 19 C VAL 20 n 20 VAL 20 C ALA 21 n 21 ALA 21 C ARG 22 n 22 ARG 22 C GLY 23 n 23 GLY 23 C LEU 24 n 24 LEU 24 C VAL 25 n 25 VAL 25 C GLY 26 n 26 GLY 26 C GLU 27 n 27 GLU 27 C ILE 28 n 28 ILE 28 C ILE 29 n 29 ILE 29 C ALA 30 n 30 ALA 30 C ARG 31 n 31 ARG 31 C TYR 32 n 32 TYR 32 C GLU 33 n 33 GLU 33 C LYS 34 n 34 LYS 34 C LYS 35 n 35 LYS 35 C GLY 36 n 36 GLY 36 C PHE 37 n 37 PHE 37 C VAL 38 n 38 VAL 38 C LEU 39 n 39 LEU 39 C VAL 40 n 40 VAL 40 C GLY 41 n 41 GLY 41 C LEU 42 n 42 LEU 42 C LYS 43 n 43 LYS 43 C GLN 44 n 44 GLN 44 C LEU 45 n 45 LEU 45 C VAL 46 n 46 VAL 46 C PRO 47 n 47 PRO 47 C THR 48 n 48 THR 48 C LYS 49 n 49 LYS 49 C ASP 50 n 50 ASP 50 C LEU 51 n 51 LEU 51 C ALA 52 n 52 ALA 52 C GLU 53 n 53 GLU 53 C SER 54 n 54 SER 54 C HIS 55 n 55 HIS 55 C TYR 56 n 56 TYR 56 C ALA 57 n 57 ALA 57 C GLU 58 n 58 GLU 58 C HIS 59 n 59 HIS 59 C LYS 60 n 60 LYS 60 C GLU 61 n 61 GLU 61 C ARG 62 n 62 ARG 62 C PRO 63 n 63 PRO 63 C PHE 64 n 64 PHE 64 C PHE 65 n 65 PHE 65 C GLY 66 n 66 GLY 66 C GLY 67 n 67 GLY 67 C LEU 68 n 68 LEU 68 C VAL 69 n 69 VAL 69 C SER 70 n 70 SER 70 C PHE 71 n 71 PHE 71 C ILE 72 n 72 ILE 72 C THR 73 n 73 THR 73 C SER 74 n 74 SER 74 C GLY 75 n 75 GLY 75 C PRO 76 n 76 PRO 76 C VAL 77 n 77 VAL 77 C VAL 78 n 78 VAL 78 C ALA 79 n 79 ALA 79 C MET 80 n 80 MET 80 C VAL 81 n 81 VAL 81 C PHE 82 n 82 PHE 82 C GLU 83 n 83 GLU 83 C GLY 84 n 84 GLY 84 C LYS 85 n 85 LYS 85 C GLY 86 n 86 GLY 86 C VAL 87 n 87 VAL 87 C VAL 88 n 88 VAL 88 C ALA 89 n 89 ALA 89 C SER 90 n 90 SER 90 C ALA 91 n 91 ALA 91 C ARG 92 n 92 ARG 92 C LEU 93 n 93 LEU 93 C MET 94 n 94 MET 94 C ILE 95 n 95 ILE 95 C GLY 96 n 96 GLY 96 C VAL 97 n 97 VAL 97 C THR 98 n 98 THR 98 C ASN 99 n 99 ASN 99 C PRO 100 n 100 PRO 100 C LEU 101 n 101 LEU 101 C ALA 102 n 102 ALA 102 C SER 103 n 103 SER 103 C ALA 104 n 104 ALA 104 C PRO 105 n 105 PRO 105 C GLY 106 n 106 GLY 106 C SER 107 n 107 SER 107 C ILE 108 n 108 ILE 108 C ARG 109 n 109 ARG 109 C GLY 110 n 110 GLY 110 C ASP 111 n 111 ASP 111 C PHE 112 n 112 PHE 112 C GLY 113 n 113 GLY 113 C VAL 114 n 114 VAL 114 C ASP 115 n 115 ASP 115 C VAL 116 n 116 VAL 116 C GLY 117 n 117 GLY 117 C ARG 118 n 118 ARG 118 C ASN 119 n 119 ASN 119 C ILE 120 n 120 ILE 120 C ILE 121 n 121 ILE 121 C GLY 122 n 122 GLY 122 C GLY 123 n 123 GLY 123 C SER 124 n 124 SER 124 C ASP 125 n 125 ASP 125 C SER 126 n 126 SER 126 C VAL 127 n 127 VAL 127 C GLU 128 n 128 GLU 128 C SER 129 n 129 SER 129 C ALA 130 n 130 ALA 130 C ASN 131 n 131 ASN 131 C ARG 132 n 132 ARG 132 C GLU 133 n 133 GLU 133 C ILE 134 n 134 ILE 134 C ALA 135 n 135 ALA 135 C LEU 136 n 136 LEU 136 C TRP 137 n 137 TRP 137 C PHE 138 n 138 PHE 138 C LYS 139 n 139 LYS 139 C PRO 140 n 140 PRO 140 C GLU 141 n 141 GLU 141 C GLU 142 n 142 GLU 142 C LEU 143 n 143 LEU 143 C LEU 144 n 144 LEU 144 C THR 145 n 145 THR 145 C GLU 146 n 146 GLU 146 C VAL 147 n 147 VAL 147 C LYS 148 n 148 LYS 148 C PRO 149 n 149 PRO 149 C ASN 150 n 150 ASN 150 C PRO 151 n 151 PRO 151 C ASN 152 n 152 ASN 152 C LEU 153 n 153 LEU 153 C TYR 154 n 154 TYR 154 C GLU 155 n 155 GLU 155 C author_and_software_defined_assembly PISA,PQS 6 hexameric 18360 -135 33890 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 A RTP 160 E O1B RTP 1_555 81.0 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 A RTP 160 E O3G RTP 1_555 71.8 A RTP 160 E O1B RTP 1_555 A MG 164 D MG MG 1_555 A RTP 160 E O3G RTP 1_555 84.9 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1001 J O HOH 1_555 79.4 A RTP 160 E O1B RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1001 J O HOH 1_555 143.1 A RTP 160 E O3G RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1001 J O HOH 1_555 59.3 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1002 J O HOH 1_555 142.5 A RTP 160 E O1B RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1002 J O HOH 1_555 75.0 A RTP 160 E O3G RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1002 J O HOH 1_555 77.7 A HOH 1001 J O HOH 1_555 A MG 164 D MG MG 1_555 A HOH 1002 J O HOH 1_555 103.3 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 108.9 A RTP 160 E O1B RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 74.6 A RTP 160 E O3G RTP 1_555 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 158.9 A HOH 1001 J O HOH 1_555 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 141.7 A HOH 1002 J O HOH 1_555 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 92.1 A RTP 161 F O2A RTP 1_555 B MG 163 H MG MG 1_555 A RTP 161 F O3G RTP 1_555 110.2 A RTP 161 F O2A RTP 1_555 B MG 163 H MG MG 1_555 A RTP 161 F O1B RTP 1_555 70.8 A RTP 161 F O3G RTP 1_555 B MG 163 H MG MG 1_555 A RTP 161 F O1B RTP 1_555 77.4 A RTP 161 F O2A RTP 1_555 B MG 163 H MG MG 1_555 A HOH 1016 J O HOH 1_555 98.2 A RTP 161 F O3G RTP 1_555 B MG 163 H MG MG 1_555 A HOH 1016 J O HOH 1_555 111.1 A RTP 161 F O1B RTP 1_555 B MG 163 H MG MG 1_555 A HOH 1016 J O HOH 1_555 54.8 A RTP 162 G O3G RTP 1_555 C MG 165 I MG MG 1_555 A RTP 162 G O2A RTP 1_555 64.3 A RTP 162 G O3G RTP 1_555 C MG 165 I MG MG 1_555 A RTP 162 G O1B RTP 1_555 79.6 A RTP 162 G O2A RTP 1_555 C MG 165 I MG MG 1_555 A RTP 162 G O1B RTP 1_555 75.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_765 -x+2,-x+y+1,-z+1/3 crystal symmetry operation 107.5965000000 62.1208682389 51.2726666667 A N VAL 38 A N VAL 38 A O GLU 83 A O GLU 83 A O MET 80 A O MET 80 A N LEU 13 A N LEU 13 A N ALA 14 A N ALA 14 A O GLY 122 A O GLY 122 B N GLY 41 B N GLY 41 B O VAL 81 B O VAL 81 B O MET 80 B O MET 80 B N LEU 13 B N LEU 13 B N ALA 14 B N ALA 14 B O GLY 122 B O GLY 122 C N GLY 41 C N GLY 41 C O VAL 81 C O VAL 81 C O MET 80 C O MET 80 C N LEU 13 C N LEU 13 C N ALA 14 C N ALA 14 C O GLY 122 C O GLY 122 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 B MET 1 B MET 1 1 Y 1 B SER 2 B SER 2 1 Y 1 B THR 3 B THR 3 1 Y 1 B ASN 4 B ASN 4 1 Y 1 B LYS 5 B LYS 5 1 Y 1 C MET 1 C MET 1 1 Y 1 C SER 2 C SER 2 1 Y 1 C THR 3 C THR 3 1 Y 1 C ASN 4 C ASN 4 1 Y 1 C LYS 5 C LYS 5 1 Y 1 7.22 0.50 120.30 127.52 A A A NE CZ NH1 ARG ARG ARG 92 92 92 N 1 -7.65 0.50 120.30 112.65 A A A NE CZ NH2 ARG ARG ARG 92 92 92 N 1 -4.02 0.50 120.30 116.28 B B B NE CZ NH1 ARG ARG ARG 92 92 92 N 1 4.18 0.50 120.30 124.48 B B B NE CZ NH2 ARG ARG ARG 92 92 92 N 1 -3.76 0.50 120.30 116.54 C C C NE CZ NH1 ARG ARG ARG 92 92 92 N 1 3.62 0.50 120.30 123.92 C C C NE CZ NH2 ARG ARG ARG 92 92 92 N 1 A ASN 7 -77.89 39.08 1 A TYR 56 -89.62 31.41 1 A LYS 60 -49.85 -16.34 1 A PRO 63 -51.55 1.16 1 A ILE 72 -48.97 -10.14 1 A ILE 120 55.64 -48.51 1 A ALA 130 -63.03 -71.27 1 B ASP 50 -64.38 -70.12 1 B ILE 72 -49.21 -11.06 1 B VAL 114 -140.77 -17.85 1 B ILE 120 54.24 -49.17 1 B ALA 130 -62.93 -71.04 1 C ASN 7 -150.13 81.38 1 C GLU 9 -38.72 135.03 1 C TYR 56 -88.72 31.74 1 C ILE 72 -50.54 -9.72 1 C ARG 118 -119.41 71.01 1 C ILE 120 56.11 -49.52 1 C ALA 130 -63.28 -71.86 1 C PRO 151 -69.32 2.31 0.249 0.207 2.9 20.2 553 10647 10546 RANDOM 1 2.0 1.0 MOLECULAR REPLACEMENT Engh & Huber 2.9 20.2 38 3548 90 0 3420 0.007 1.4 2.9 20.0 1MN9 10647 10546 2.0 1.0 1 99.1 2.9 3.0 10566 0.117 1 99.1 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 NDP kinase mutant (H122G) complex with RTP 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 2 N N 2 N N 4 N N 4 N N 4 N N The biological assembly is a hexamer generated from the trimer in the asymmetric unit A LYS 16 A LYS 16 HELX_P A ARG 22 A ARG 22 1 1 7 A LEU 24 A LEU 24 HELX_P A GLY 36 A GLY 36 1 2 13 A THR 48 A THR 48 HELX_P A TYR 56 A TYR 56 1 3 9 A ALA 57 A ALA 57 HELX_P A LYS 60 A LYS 60 5 4 4 A PHE 64 A PHE 64 HELX_P A ILE 72 A ILE 72 1 5 9 A GLY 86 A GLY 86 HELX_P A GLY 96 A GLY 96 1 6 11 A ASN 99 A ASN 99 HELX_P A SER 103 A SER 103 5 7 5 A SER 107 A SER 107 HELX_P A GLY 113 A GLY 113 1 8 7 A ASP 115 A ASP 115 HELX_P A ASN 119 A ASN 119 5 9 5 A SER 126 A SER 126 HELX_P A PHE 138 A PHE 138 1 10 13 A LYS 139 A LYS 139 HELX_P A LEU 143 A LEU 143 5 11 5 B LYS 16 B LYS 16 HELX_P B ARG 22 B ARG 22 1 12 7 B LEU 24 B LEU 24 HELX_P B GLY 36 B GLY 36 1 13 13 B THR 48 B THR 48 HELX_P B TYR 56 B TYR 56 1 14 9 B ALA 57 B ALA 57 HELX_P B LYS 60 B LYS 60 5 15 4 B PHE 64 B PHE 64 HELX_P B ILE 72 B ILE 72 1 16 9 B GLY 86 B GLY 86 HELX_P B GLY 96 B GLY 96 1 17 11 B ASN 99 B ASN 99 HELX_P B SER 103 B SER 103 5 18 5 B SER 107 B SER 107 HELX_P B GLY 113 B GLY 113 1 19 7 B SER 126 B SER 126 HELX_P B PHE 138 B PHE 138 1 20 13 B LYS 139 B LYS 139 HELX_P B LEU 143 B LEU 143 5 21 5 C LYS 16 C LYS 16 HELX_P C ARG 22 C ARG 22 1 22 7 C LEU 24 C LEU 24 HELX_P C GLY 36 C GLY 36 1 23 13 C THR 48 C THR 48 HELX_P C TYR 56 C TYR 56 1 24 9 C ALA 57 C ALA 57 HELX_P C LYS 60 C LYS 60 5 25 4 C PHE 64 C PHE 64 HELX_P C ILE 72 C ILE 72 1 26 9 C GLY 86 C GLY 86 HELX_P C GLY 96 C GLY 96 1 27 11 C ASN 99 C ASN 99 HELX_P C SER 103 C SER 103 5 28 5 C SER 107 C SER 107 HELX_P C GLY 113 C GLY 113 1 29 7 C SER 126 C SER 126 HELX_P C PHE 138 C PHE 138 1 30 13 C LYS 139 C LYS 139 HELX_P C LEU 143 C LEU 143 5 31 5 metalc 2.168 A RTP 160 E O2A RTP 1_555 A MG 164 D MG MG 1_555 metalc 2.407 A RTP 160 E O1B RTP 1_555 A MG 164 D MG MG 1_555 metalc 2.780 A RTP 160 E O3G RTP 1_555 A MG 164 D MG MG 1_555 metalc 1.888 A RTP 161 F O2A RTP 1_555 B MG 163 H MG MG 1_555 metalc 1.991 A RTP 161 F O3G RTP 1_555 B MG 163 H MG MG 1_555 metalc 2.826 A RTP 161 F O1B RTP 1_555 B MG 163 H MG MG 1_555 metalc 2.677 A RTP 162 G O3G RTP 1_555 C MG 165 I MG MG 1_555 metalc 2.260 A RTP 162 G O2A RTP 1_555 C MG 165 I MG MG 1_555 metalc 2.460 A RTP 162 G O1B RTP 1_555 C MG 165 I MG MG 1_555 metalc 1.920 A MG 164 D MG MG 1_555 A HOH 1001 J O HOH 1_555 metalc 2.013 A MG 164 D MG MG 1_555 A HOH 1002 J O HOH 1_555 metalc 1.938 A MG 164 D MG MG 1_555 A HOH 1003 J O HOH 1_555 metalc 1.901 A HOH 1016 J O HOH 1_555 B MG 163 H MG MG 1_555 TRANSFERASE NDP kinase-Ribavirin complex, transferase NDKC_DICDI UNP 1 1 P22887 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 1 155 1MN9 1 155 P22887 A 1 1 155 1 155 1MN9 1 155 P22887 B 1 1 155 1 155 1MN9 1 155 P22887 C 1 1 155 1 HIS engineered mutation GLY 122 1MN9 A P22887 UNP 122 122 2 HIS engineered mutation GLY 122 1MN9 B P22887 UNP 122 122 3 HIS engineered mutation GLY 122 1MN9 C P22887 UNP 122 122 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 38 A VAL 38 A LEU 45 A LEU 45 A VAL 77 A VAL 77 A GLU 83 A GLU 83 A ARG 10 A ARG 10 A VAL 15 A VAL 15 A ILE 121 A ILE 121 A GLY 123 A GLY 123 B VAL 38 B VAL 38 B LEU 45 B LEU 45 B VAL 77 B VAL 77 B GLU 83 B GLU 83 B ARG 10 B ARG 10 B VAL 15 B VAL 15 B ILE 121 B ILE 121 B GLY 123 B GLY 123 C VAL 38 C VAL 38 C LEU 45 C LEU 45 C VAL 77 C VAL 77 C GLU 83 C GLU 83 C ARG 10 C ARG 10 C VAL 15 C VAL 15 C ILE 121 C ILE 121 C GLY 123 C GLY 123 BINDING SITE FOR RESIDUE MG B 163 B MG 163 Software 2 BINDING SITE FOR RESIDUE MG A 164 A MG 164 Software 4 BINDING SITE FOR RESIDUE MG C 165 C MG 165 Software 2 BINDING SITE FOR RESIDUE RTP A 160 A RTP 160 Software 16 BINDING SITE FOR RESIDUE RTP A 161 A RTP 161 Software 14 BINDING SITE FOR RESIDUE RTP A 162 A RTP 162 Software 13 A RTP 161 F RTP 2 1_555 A HOH 1016 J HOH 2 1_555 A RTP 160 E RTP 4 1_555 A HOH 1001 J HOH 4 1_555 A HOH 1002 J HOH 4 1_555 A HOH 1003 J HOH 4 1_555 A RTP 162 G RTP 2 1_555 C ASP 125 C ASP 125 2 1_555 A LYS 16 A LYS 16 16 1_555 A TYR 56 A TYR 56 16 1_555 A HIS 59 A HIS 59 16 1_555 A PHE 64 A PHE 64 16 1_555 A LEU 68 A LEU 68 16 1_555 A ARG 92 A ARG 92 16 1_555 A THR 98 A THR 98 16 1_555 A ARG 109 A ARG 109 16 1_555 A VAL 116 A VAL 116 16 1_555 A ASN 119 A ASN 119 16 1_555 A GLY 122 A GLY 122 16 1_555 A GLY 123 A GLY 123 16 1_555 A MG 164 D MG 16 1_555 A HOH 1001 J HOH 16 1_555 A HOH 1002 J HOH 16 1_555 A HOH 1003 J HOH 16 1_555 A HOH 1016 J HOH 14 1_555 B LYS 16 B LYS 16 14 1_555 B TYR 56 B TYR 56 14 1_555 B HIS 59 B HIS 59 14 1_555 B PHE 64 B PHE 64 14 1_555 B LEU 68 B LEU 68 14 1_555 B ARG 92 B ARG 92 14 1_555 B THR 98 B THR 98 14 1_555 B ARG 109 B ARG 109 14 1_555 B VAL 116 B VAL 116 14 1_555 B ASN 119 B ASN 119 14 1_555 B GLY 122 B GLY 122 14 1_555 B GLY 123 B GLY 123 14 1_555 B MG 163 H MG 14 1_555 C LYS 16 C LYS 16 13 1_555 C TYR 56 C TYR 56 13 1_555 C HIS 59 C HIS 59 13 1_555 C PHE 64 C PHE 64 13 1_555 C LEU 68 C LEU 68 13 1_555 C ARG 92 C ARG 92 13 1_555 C THR 98 C THR 98 13 1_555 C ARG 109 C ARG 109 13 1_555 C VAL 116 C VAL 116 13 1_555 C ASN 119 C ASN 119 13 1_555 C GLY 122 C GLY 122 13 1_555 C GLY 123 C GLY 123 13 1_555 C MG 165 I MG 13 1_555 152 P 31 2 1