0.018832
0.000000
0.000000
0.000000
0.018832
0.000000
0.000000
0.000000
0.018832
0.00000
0.00000
0.00000
Fass, D.
Harrison, S.C.
Kim, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
90.00
53.100
53.100
53.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
3
465
469
10.1038/nsb0596-465
8612078
Retrovirus envelope domain at 1.7 angstrom resolution.
1996
10.2210/pdb1mof/pdb
pdb_00001mof
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
SIEMENS
M
x-ray
1
1.5418
1.0
1.5418
6169.044
MOLONEY MURINE LEUKEMIA VIRUS P15
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
39
nat
water
no
no
MDDLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECAFYAD
MDDLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECAFYAD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gammaretrovirus
Murine leukemia virus
Escherichia
Escherichia coli
sample
11801
Moloney murine leukemia virus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PAED4
2.02
39.18
pdbx_database_status
struct_ref_seq_dif
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Other
Database references
Derived calculations
1
0
1996-10-14
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-06-27
1
4
2022-12-21
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-04-02
REL
CL
CHLORIDE ION
HOH
water
RESIDUE 94 IS A CYSTEINE IN WILD TYPE P15 PROTEIN.
PEPTIDE CONTAINING THIS CYSTEINE CRYSTALLIZES ISOMORPHOUSLY
WITH THE ALANINE MUTANT, WAS SOLVED TO 1.8A RESOLUTION (R
FACTOR .190 AND HAS A STRUCTURE IS VIRTUALLY IDENTICAL TO
THAT OF THE MUTANT. TO GENERATE THE WILD-TYPE MODEL,
REPLACE ALA 94 WITH CYSTEINE IN ITS MOST COMMON ROTAMER.
AN AMINO TERMINAL METHIONINE WAS PRESENT AS AN EXPRESSION
ARTIFACT. DENSITY FOR THIS METHIONINE WAS NOT VISIBLE IN
THE ELECTRON DENSITY. RESIDUE ASP 45 WAS NOT VISIBLE IN
THE ELECTRON DENSITY. RESIDUE ASP 98 WAS INCLUDED IN
REFINEMENT BUT ITS ATOMS HAVE HIGH B FACTORS AND ITS
POSITION SHOULD BE CONSIDERED AMBIGUOUS. THE CHLORIDE ION
WAS NOT INCLUDED IN THE REFINEMENT.
CL
56
2
CL
CL
99
A
HOH
96
3
HOH
HOH
100
A
HOH
97
3
HOH
HOH
101
A
HOH
98
3
HOH
HOH
102
A
HOH
99
3
HOH
HOH
103
A
HOH
90
3
HOH
HOH
104
A
HOH
61
3
HOH
HOH
105
A
HOH
62
3
HOH
HOH
106
A
HOH
63
3
HOH
HOH
107
A
HOH
64
3
HOH
HOH
108
A
HOH
65
3
HOH
HOH
109
A
HOH
66
3
HOH
HOH
110
A
HOH
67
3
HOH
HOH
111
A
HOH
68
3
HOH
HOH
112
A
HOH
69
3
HOH
HOH
113
A
HOH
70
3
HOH
HOH
114
A
HOH
71
3
HOH
HOH
115
A
HOH
72
3
HOH
HOH
116
A
HOH
73
3
HOH
HOH
117
A
HOH
74
3
HOH
HOH
118
A
HOH
75
3
HOH
HOH
119
A
HOH
76
3
HOH
HOH
120
A
HOH
77
3
HOH
HOH
121
A
HOH
78
3
HOH
HOH
122
A
HOH
79
3
HOH
HOH
123
A
HOH
80
3
HOH
HOH
124
A
HOH
81
3
HOH
HOH
125
A
HOH
82
3
HOH
HOH
126
A
HOH
83
3
HOH
HOH
127
A
HOH
84
3
HOH
HOH
128
A
HOH
85
3
HOH
HOH
129
A
HOH
86
3
HOH
HOH
130
A
HOH
87
3
HOH
HOH
131
A
HOH
88
3
HOH
HOH
132
A
HOH
89
3
HOH
HOH
133
A
HOH
90
3
HOH
HOH
134
A
HOH
91
3
HOH
HOH
135
A
HOH
92
3
HOH
HOH
136
A
HOH
93
3
HOH
HOH
137
A
HOH
94
3
HOH
HOH
138
A
n
1
44
A
n
2
45
A
ASP
46
n
3
ASP
46
A
LEU
47
n
4
LEU
47
A
ARG
48
n
5
ARG
48
A
GLU
49
n
6
GLU
49
A
VAL
50
n
7
VAL
50
A
GLU
51
n
8
GLU
51
A
LYS
52
n
9
LYS
52
A
SER
53
n
10
SER
53
A
ILE
54
n
11
ILE
54
A
SER
55
n
12
SER
55
A
ASN
56
n
13
ASN
56
A
LEU
57
n
14
LEU
57
A
GLU
58
n
15
GLU
58
A
LYS
59
n
16
LYS
59
A
SER
60
n
17
SER
60
A
LEU
61
n
18
LEU
61
A
THR
62
n
19
THR
62
A
SER
63
n
20
SER
63
A
LEU
64
n
21
LEU
64
A
SER
65
n
22
SER
65
A
GLU
66
n
23
GLU
66
A
VAL
67
n
24
VAL
67
A
VAL
68
n
25
VAL
68
A
LEU
69
n
26
LEU
69
A
GLN
70
n
27
GLN
70
A
ASN
71
n
28
ASN
71
A
ARG
72
n
29
ARG
72
A
ARG
73
n
30
ARG
73
A
GLY
74
n
31
GLY
74
A
LEU
75
n
32
LEU
75
A
ASP
76
n
33
ASP
76
A
LEU
77
n
34
LEU
77
A
LEU
78
n
35
LEU
78
A
PHE
79
n
36
PHE
79
A
LEU
80
n
37
LEU
80
A
LYS
81
n
38
LYS
81
A
GLU
82
n
39
GLU
82
A
GLY
83
n
40
GLY
83
A
GLY
84
n
41
GLY
84
A
LEU
85
n
42
LEU
85
A
CYS
86
n
43
CYS
86
A
ALA
87
n
44
ALA
87
A
ALA
88
n
45
ALA
88
A
LEU
89
n
46
LEU
89
A
LYS
90
n
47
LYS
90
A
GLU
91
n
48
GLU
91
A
GLU
92
n
49
GLU
92
A
CYS
93
n
50
CYS
93
A
ALA
94
n
51
ALA
94
A
PHE
95
n
52
PHE
95
A
TYR
96
n
53
TYR
96
A
ALA
97
n
54
ALA
97
A
ASP
98
n
55
ASP
98
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
5740
-68
9120
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_555
z,x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_555
y,z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
CL
99
B
CL
1
A
MET
44
A
MET
1
1
Y
1
A
ASP
45
A
ASP
2
1
Y
1
9.27
0.50
120.30
129.57
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
72
72
72
N
1
-12.42
0.50
120.30
107.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
72
72
72
N
0.234
0.169
0.169
1.7
20.0
402
5295
7.6
99.6
1
2.0
1.7
20.0
39
453
1
0
413
0.017
2.385
data collection
BUDDHA
refinement
X-PLOR
data reduction
BUDDHA
COAT PROTEIN
1
N
N
2
N
N
3
N
N
A
LEU
47
A
LEU
4
HELX_P
A
LEU
78
A
LEU
35
1
1
32
A
LEU
80
A
LEU
37
HELX_P
A
GLU
82
A
GLU
39
5
2
3
A
LEU
85
A
LEU
42
HELX_P
A
LEU
89
A
LEU
46
1
3
5
disulf
2.028
A
CYS
86
A
SG
CYS
43
1_555
A
CYS
93
A
SG
CYS
50
1_555
VIRAL PROTEIN
GLYCOPROTEIN, COAT PROTEIN, POLYPROTEIN, TRANSMEMBRANE, SIGN, Viral protein
ENV_MLVMO
UNP
1
1
P03385
MARSTLSKPLKNKVNPRGPLIPLILLMLRGVSTASPGSSPHQVYNITWEVTNGDRETVWATSGNHPLWTWWPDLTPDLCM
LAHHGPSYWGLEYQSPFSSPPGPPCCSGGSSPGCSRDCEEPLTSLTPRCNTAWNRLKLDQTTHKSNEGFYVCPGPHRPRE
SKSCGGPDSFYCAYWGCETTGRAYWKPSSSWDFITVNNNLTSDQAVQVCKDNKWCNPLVIRFTDAGRRVTSWTTGHYWGL
RLYVSGQDPGLTFGIRLRYQNLGPRVPIGPNPVLADQQPLSKPKPVKSPSVTKPPSGTPLSPTQLPPAGTENRLLNLVDG
AYQALNLTSPDKTQECWLCLVAGPPYYEGVAVLGTYSNHTSAPANCSVASQHKLTLSEVTGQGLCIGAVPKTHQALCNTT
QTSSRGSYYLVAPTGTMWACSTGLTPCISTTILNLTTDYCVLVELWPRVTYHSPSYVYGLFERSNRHKREPVSLTLALLL
GGLTMGGIAAGIGTGTTALMATQQFQQLQAAVQDDLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKE
ECCFYADHTGLVRDSMAKLRERLNQRQKLFESTQGWFEGLFNRSPWFTTLISTIMGPLIVLLMILLFGPCILNRLVQFVK
DRISVVQALVLTQQYHQLKPIEYEP
514
567
1MOF
45
98
P03385
A
1
2
55
1
CYS
engineered mutation
ALA
94
1MOF
A
P03385
UNP
563
51
BINDING SITE FOR RESIDUE CL A 99
A
CL
99
Software
3
A
ASN
71
A
ASN
28
3
1_555
A
ASN
71
A
ASN
28
3
9_555
A
ASN
71
A
ASN
28
3
5_555
198
P 21 3