0.011409
0.000000
0.000000
0.000000
0.011409
0.000000
0.000000
0.000000
0.027678
0.00000
0.00000
0.00000
McFarland, B.J.
Kortemme, T.
Baker, D.
Strong, R.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
87.650
87.650
36.130
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
O
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
411
422
10.1016/S0969-2126(03)00047-9
12679019
Symmetry Recognizing Asymmetry: Analysis of the Interactions between the C-Type Lectin-like Immunoreceptor NKG2D and MHC
Class I-like Ligands
2003
10.2210/pdb1mpu/pdb
pdb_00001mpu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200.0
1
Osmics mirrors
IMAGE PLATE
2001-12-05
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
15981.102
NKG2-D type II integral membrane protein
residues 80-216
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
105
nat
water
NKG2-D activating NK receptor, NK cell receptor D
no
no
MNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLV
HIPTNGSWQWEDGSILSPNLLTIIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV
MNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLV
HIPTNGSWQWEDGSILSPNLLTIIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21-DE3
PLASMID
pET22b+
1
2.17
43.32
VAPOR DIFFUSION, HANGING DROP
9.0
ammonium dihydrogen phosphate, bicine, ethylene glycol, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
diffrn_source
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-04-15
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-04-04
1
4
2022-12-21
1
5
2023-09-20
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
human NKG2D in complex with MIC-A
human NKG2D in complex with ULBP3
mouse NKG2D
mouse NKG2D in complex with Rae-1beta
RCSB
Y
RCSB
2002-09-12
REL
PO4
PHOSPHATE ION
HOH
water
1HYR
PDB ENTRY 1HYR (CHAIN A)
PDB
experimental model
PO4
500
2
PO4
PO4
500
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
n
1
79
A
n
2
80
A
n
3
81
A
n
4
82
A
n
5
83
A
n
6
84
A
n
7
85
A
n
8
86
A
n
9
87
A
GLN
88
n
10
GLN
88
A
ILE
89
n
11
ILE
89
A
PRO
90
n
12
PRO
90
A
LEU
91
n
13
LEU
91
A
THR
92
n
14
THR
92
A
GLU
93
n
15
GLU
93
A
SER
94
n
16
SER
94
A
TYR
95
n
17
TYR
95
A
CYS
96
n
18
CYS
96
A
GLY
97
n
19
GLY
97
A
PRO
98
n
20
PRO
98
A
CYS
99
n
21
CYS
99
A
PRO
100
n
22
PRO
100
A
LYS
101
n
23
LYS
101
A
ASN
102
n
24
ASN
102
A
TRP
103
n
25
TRP
103
A
ILE
104
n
26
ILE
104
A
CYS
105
n
27
CYS
105
A
TYR
106
n
28
TYR
106
A
LYS
107
n
29
LYS
107
A
ASN
108
n
30
ASN
108
A
ASN
109
n
31
ASN
109
A
CYS
110
n
32
CYS
110
A
TYR
111
n
33
TYR
111
A
GLN
112
n
34
GLN
112
A
PHE
113
n
35
PHE
113
A
PHE
114
n
36
PHE
114
A
ASP
115
n
37
ASP
115
A
GLU
116
n
38
GLU
116
A
SER
117
n
39
SER
117
A
LYS
118
n
40
LYS
118
A
ASN
119
n
41
ASN
119
A
TRP
120
n
42
TRP
120
A
TYR
121
n
43
TYR
121
A
GLU
122
n
44
GLU
122
A
SER
123
n
45
SER
123
A
GLN
124
n
46
GLN
124
A
ALA
125
n
47
ALA
125
A
SER
126
n
48
SER
126
A
CYS
127
n
49
CYS
127
A
MET
128
n
50
MET
128
A
SER
129
n
51
SER
129
A
GLN
130
n
52
GLN
130
A
ASN
131
n
53
ASN
131
A
ALA
132
n
54
ALA
132
A
SER
133
n
55
SER
133
A
LEU
134
n
56
LEU
134
A
LEU
135
n
57
LEU
135
A
LYS
136
n
58
LYS
136
A
VAL
137
n
59
VAL
137
A
TYR
138
n
60
TYR
138
A
SER
139
n
61
SER
139
A
LYS
140
n
62
LYS
140
A
GLU
141
n
63
GLU
141
A
ASP
142
n
64
ASP
142
A
GLN
143
n
65
GLN
143
A
ASP
144
n
66
ASP
144
A
LEU
145
n
67
LEU
145
A
LEU
146
n
68
LEU
146
A
LYS
147
n
69
LYS
147
A
LEU
148
n
70
LEU
148
A
VAL
149
n
71
VAL
149
A
LYS
150
n
72
LYS
150
A
SER
151
n
73
SER
151
A
TYR
152
n
74
TYR
152
A
HIS
153
n
75
HIS
153
A
TRP
154
n
76
TRP
154
A
MET
155
n
77
MET
155
A
GLY
156
n
78
GLY
156
A
LEU
157
n
79
LEU
157
A
VAL
158
n
80
VAL
158
A
HIS
159
n
81
HIS
159
A
ILE
160
n
82
ILE
160
A
PRO
161
n
83
PRO
161
A
THR
162
n
84
THR
162
A
ASN
163
n
85
ASN
163
A
GLY
164
n
86
GLY
164
A
SER
165
n
87
SER
165
A
TRP
166
n
88
TRP
166
A
GLN
167
n
89
GLN
167
A
TRP
168
n
90
TRP
168
A
GLU
169
n
91
GLU
169
A
ASP
170
n
92
ASP
170
A
GLY
171
n
93
GLY
171
A
SER
172
n
94
SER
172
A
ILE
173
n
95
ILE
173
A
LEU
174
n
96
LEU
174
A
SER
175
n
97
SER
175
A
PRO
176
n
98
PRO
176
A
ASN
177
n
99
ASN
177
A
LEU
178
n
100
LEU
178
A
LEU
179
n
101
LEU
179
A
THR
180
n
102
THR
180
A
ILE
181
n
103
ILE
181
A
ILE
182
n
104
ILE
182
A
GLU
183
n
105
GLU
183
A
MET
184
n
106
MET
184
A
GLN
185
n
107
GLN
185
A
LYS
186
n
108
LYS
186
A
GLY
187
n
109
GLY
187
A
ASP
188
n
110
ASP
188
A
CYS
189
n
111
CYS
189
A
ALA
190
n
112
ALA
190
A
LEU
191
n
113
LEU
191
A
TYR
192
n
114
TYR
192
A
ALA
193
n
115
ALA
193
A
SER
194
n
116
SER
194
A
SER
195
n
117
SER
195
A
PHE
196
n
118
PHE
196
A
LYS
197
n
119
LYS
197
A
GLY
198
n
120
GLY
198
A
TYR
199
n
121
TYR
199
A
ILE
200
n
122
ILE
200
A
GLU
201
n
123
GLU
201
A
ASN
202
n
124
ASN
202
A
CYS
203
n
125
CYS
203
A
SER
204
n
126
SER
204
A
THR
205
n
127
THR
205
A
PRO
206
n
128
PRO
206
A
ASN
207
n
129
ASN
207
A
THR
208
n
130
THR
208
A
TYR
209
n
131
TYR
209
A
ILE
210
n
132
ILE
210
A
CYS
211
n
133
CYS
211
A
MET
212
n
134
MET
212
A
GLN
213
n
135
GLN
213
A
ALA
214
n
136
ARG
214
A
THR
215
n
137
THR
215
A
n
138
216
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3210
-35
13030
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
104
A
N
ILE
26
A
O
TYR
111
A
O
TYR
33
A
N
PHE
114
A
N
PHE
36
A
O
TYR
209
A
O
TYR
131
A
O
MET
212
A
O
MET
134
A
N
SER
133
A
N
SER
55
A
O
GLN
167
A
O
GLN
89
A
N
VAL
158
A
N
VAL
80
A
N
HIS
153
A
N
HIS
75
A
O
TYR
192
A
O
TYR
114
A
N
LEU
191
A
N
LEU
113
A
O
TYR
199
A
O
TYR
121
A
O
GLY
198
A
O
GLY
120
A
N
ILE
182
A
N
ILE
104
1
A
CG
ARG
214
A
CG
ARG
136
1
Y
1
A
CD
ARG
214
A
CD
ARG
136
1
Y
1
A
NE
ARG
214
A
NE
ARG
136
1
Y
1
A
CZ
ARG
214
A
CZ
ARG
136
1
Y
1
A
NH1
ARG
214
A
NH1
ARG
136
1
Y
1
A
NH2
ARG
214
A
NH2
ARG
136
1
Y
1
A
MET
79
A
MET
1
1
Y
1
A
ASN
80
A
ASN
2
1
Y
1
A
SER
81
A
SER
3
1
Y
1
A
LEU
82
A
LEU
4
1
Y
1
A
PHE
83
A
PHE
5
1
Y
1
A
ASN
84
A
ASN
6
1
Y
1
A
GLN
85
A
GLN
7
1
Y
1
A
GLU
86
A
GLU
8
1
Y
1
A
VAL
87
A
VAL
9
1
Y
1
A
VAL
216
A
VAL
138
1
Y
1
-10.76
1.60
122.70
111.94
A
A
A
O
C
N
SER
SER
LYS
139
139
140
Y
1
A
ILE
89
-46.44
173.82
1
A
PRO
90
-50.62
106.30
1
A
GLU
93
-167.25
103.12
1
A
PRO
98
-35.40
133.00
1
A
LYS
107
35.75
44.49
1
A
ASN
108
56.19
70.91
1
A
SER
117
-26.80
124.90
1
A
ASN
131
59.45
77.45
1
A
ALA
132
-174.34
-175.62
1
A
GLN
143
-141.23
21.46
1
A
SER
151
64.22
-161.18
1
A
PRO
161
-49.04
16.20
1
A
THR
162
-65.59
18.63
1
A
GLU
169
-49.18
-17.70
1
A
LEU
178
-117.30
-75.54
1
A
SER
195
95.02
55.95
1
A
PHE
196
40.97
84.41
20.861
14.583
-35.444
0.296
0.245
2.5
20.0
498
5057
4838
95.7
random
1
anisotropic
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HYR (CHAIN A)
Engh & Huber
0.37
5.0
0.50
2.5
20.0
105
1139
5
0
1029
0.008
1.9
26.4
1.4
0.5083
0.3623
2.59
38
421
2.5
20.0
1MPU
5240
5057
0.0
0.0
0.066
1
20.2
21.1
96.5
2.50
2.59
6.8
517
0.199
1
90.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
CNS
Crystal Structure of the free human NKG2D immunoreceptor
1
N
N
2
N
N
3
N
N
The biological assembly is a homodimer is generated by the two-fold axis: 1/2+x, 1/2-y, 3/4-z.
A
ASN
119
A
ASN
41
HELX_P
A
GLN
130
A
GLN
52
1
1
12
A
GLN
143
A
GLN
65
HELX_P
A
VAL
149
A
VAL
71
5
2
7
disulf
2.023
A
CYS
96
A
SG
CYS
18
1_555
A
CYS
105
A
SG
CYS
27
1_555
disulf
2.024
A
CYS
99
A
SG
CYS
21
1_555
A
CYS
110
A
SG
CYS
32
1_555
disulf
2.032
A
CYS
127
A
SG
CYS
49
1_555
A
CYS
211
A
SG
CYS
133
1_555
disulf
2.031
A
CYS
189
A
SG
CYS
111
1_555
A
CYS
203
A
SG
CYS
125
1_555
IMMUNE SYSTEM
C-type lectin-like domain, IMMUNE SYSTEM
NKG2D_HUMAN
UNP
1
80
P26718
NSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVH
IPTNGSWQWEDGSILSPNLLTIIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV
80
216
1MPU
80
216
P26718
A
1
2
138
1
initiating methionine
MET
79
1MPU
A
P26718
UNP
1
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ILE
104
A
ILE
26
A
CYS
105
A
CYS
27
A
CYS
110
A
CYS
32
A
LYS
118
A
LYS
40
A
ASN
207
A
ASN
129
A
GLN
213
A
GLN
135
A
SER
133
A
SER
55
A
LEU
134
A
LEU
56
A
TRP
166
A
TRP
88
A
TRP
168
A
TRP
90
A
TYR
152
A
TYR
74
A
HIS
159
A
HIS
81
A
CYS
189
A
CYS
111
A
ALA
193
A
ALA
115
A
LYS
197
A
LYS
119
A
GLU
201
A
GLU
123
A
THR
180
A
THR
102
A
ILE
182
A
ILE
104
BINDING SITE FOR RESIDUE PO4 A 500
A
PO4
500
Software
6
A
LYS
136
A
LYS
58
6
1_555
A
ILE
173
A
ILE
95
6
1_555
A
SER
175
A
SER
97
6
1_555
A
HOH
303
C
HOH
6
1_555
A
HOH
340
C
HOH
6
1_555
A
HOH
365
C
HOH
6
1_555
92
P 41 21 2