0.019802
0.000000
0.006396
0.000000
0.012516
0.000000
0.000000
0.000000
0.018901
0.00000
0.00000
0.00000
Krahn, J.M.
Beard, W.A.
Miller, H.
Grollman, A.P.
Wilson, S.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
107.90
90.00
50.500
79.900
55.600
C10 H14 N5 O8 P
363.221
n
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H16 N3 O13 P3
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
non-polymer
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O6 P
291.198
n
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
C
N
18
N
O
N
19
N
N
N
20
N
C
N
21
N
N
N
22
N
N
N
23
N
C
N
24
N
O
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
O
N
127
N
P
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
C
N
132
R
C
N
133
N
O
N
134
S
C
N
135
N
O
N
136
N
C
N
137
R
C
Y
138
N
N
Y
139
N
C
Y
140
N
N
Y
141
N
C
Y
142
N
C
N
143
N
N
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
N
C
N
173
R
C
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
N
C
N
198
N
N
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
N
N
204
R
C
N
205
N
C
N
206
S
C
N
207
R
C
N
208
N
O
N
209
N
O
N
210
N
C
N
211
N
O
N
212
R
P
N
213
N
O
N
214
N
O
N
215
N
O
N
216
S
P
N
217
N
O
N
218
N
O
N
219
N
O
N
220
N
P
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
O
N
241
N
P
N
242
N
O
N
243
N
O
N
244
N
O
N
245
N
C
N
246
R
C
N
247
N
O
N
248
S
C
N
249
N
O
N
250
N
C
N
251
R
C
Y
252
N
N
Y
253
N
C
Y
254
N
N
Y
255
N
C
N
256
N
C
N
257
N
O
N
258
N
N
N
259
N
C
N
260
N
N
N
261
N
N
Y
262
N
C
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
N
C
N
279
N
N
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
N
N
285
R
C
N
286
N
C
N
287
N
C
N
288
S
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
P
N
293
N
O
N
294
N
O
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
O
N
311
N
P
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
C
N
316
R
C
N
317
N
O
N
318
S
C
N
319
N
O
N
320
N
C
N
321
R
C
N
322
N
N
N
323
N
C
N
324
N
O
N
325
N
N
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
N
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
N
Y
402
N
C
Y
403
N
C
Y
404
N
N
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
S
C
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
C
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
C
N
471
N
N
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
S
N
495
N
C
N
496
N
O
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
MG
N
509
N
NA
N
510
N
N
N
511
S
C
N
512
N
C
N
513
N
O
N
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
Y
520
N
C
N
521
N
O
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
N
N
534
S
C
N
535
N
C
N
536
N
O
N
537
N
C
N
538
N
C
N
539
N
C
N
540
N
O
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
N
N
551
S
C
N
552
N
C
N
553
N
O
N
554
N
C
N
555
N
O
N
556
N
O
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
N
N
565
S
C
N
566
N
C
N
567
N
O
N
568
R
C
N
569
N
O
N
570
N
C
N
571
N
O
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
N
N
582
S
C
N
583
N
C
N
584
N
O
N
585
N
C
Y
586
N
C
Y
587
N
C
Y
588
N
C
Y
589
N
N
Y
590
N
C
Y
591
N
C
Y
592
N
C
Y
593
N
C
Y
594
N
C
N
595
N
O
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
N
N
609
S
C
N
610
N
C
N
611
N
O
N
612
N
C
Y
613
N
C
Y
614
N
C
Y
615
N
C
Y
616
N
C
Y
617
N
C
Y
618
N
C
N
619
N
O
N
620
N
O
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
N
N
633
S
C
N
634
N
C
N
635
N
O
N
636
N
C
N
637
N
C
N
638
N
C
N
639
N
O
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
H
N
644
N
H
N
645
N
H
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
650
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
sing
N
269
N
sing
Y
270
N
doub
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
sing
Y
409
N
doub
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
Y
516
N
doub
Y
517
N
sing
Y
518
N
sing
N
519
N
sing
Y
520
N
doub
N
521
N
sing
Y
522
N
doub
N
523
N
sing
Y
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
doub
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
doub
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
doub
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
Y
585
N
doub
Y
586
N
sing
Y
587
N
sing
N
588
N
sing
Y
589
N
doub
Y
590
N
sing
Y
591
N
sing
N
592
N
sing
Y
593
N
sing
Y
594
N
doub
N
595
N
sing
Y
596
N
doub
N
597
N
sing
Y
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
doub
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
Y
613
N
doub
Y
614
N
sing
Y
615
N
sing
N
616
N
sing
Y
617
N
doub
N
618
N
sing
Y
619
N
doub
N
620
N
sing
Y
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
doub
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
121
127
10.1016/S0969-2126(02)00930-9
12517346
Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals
Structural Insights into its Coding Potential
2003
10.2210/pdb1mq3/pdb
pdb_00001mq3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200.0
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
4885.157
5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'
1
syn
polymer
3045.005
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'
1
syn
polymer
1536.035
5'-D(P*GP*TP*CP*GP*G)-3'
1
syn
polymer
38241.672
DNA POLYMERASE BETA
2.7.7.7
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
78
nat
water
no
yes
(DC)(DC)(DG)(DA)(DC)(8OG)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)
CCGACGGCGCATCAGC
T
polydeoxyribonucleotide
no
yes
(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DOC)
GCTGATGCGC
P
polydeoxyribonucleotide
no
no
(DG)(DT)(DC)(DG)(DG)
GTCGG
D
polydeoxyribonucleotide
no
no
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.22
44.55
7.5
14% PEG 3350, 350 mM sodium acetate and 50 mM imidazole at 18 degrees (C), pH 7.5, temperature 291.0K
291.0
PEG 3350
1
sodium acetate
1
imidazole
1
-8.110
1
T
1
D
5
8.691
T_DC1:DG5_D
1
1.321
1.742
0.049
-0.120
-15.153
1
19
T
2
D
4
0.426
T_DC2:DG4_D
2
-12.437
-0.549
0.662
0.131
7.300
1
19
T
3
D
3
6.347
T_DG3:DC3_D
3
-16.796
-1.240
0.286
-0.268
2.277
1
20
T
4
D
2
-7.010
T_DA4:DT2_D
4
-21.573
0.370
0.290
-0.345
8.225
1
19
T
5
D
1
-0.146
T_DC5:DG1_D
5
4.495
0.851
-0.116
-0.142
-12.784
1
19
T
7
P
10
-8.855
T_DG7:DOC10_P
6
5.282
0.890
-0.992
-0.326
26.235
1
19
T
8
P
9
5.251
T_DC8:DG9_P
7
-2.061
0.246
-1.462
-0.158
-5.910
1
19
T
9
P
8
2.500
T_DG9:DC8_P
8
-6.558
-0.045
-1.175
0.174
22.291
1
19
T
10
P
7
8.434
T_DC10:DG7_P
9
-14.641
0.554
-1.005
0.061
13.775
1
20
T
11
P
6
1.139
T_DA11:DT6_P
10
-16.372
-0.108
0.290
-0.183
0.848
1
20
T
12
P
5
-0.216
T_DT12:DA5_P
11
1.141
-0.151
0.482
0.018
7.790
1
19
T
13
P
4
-3.290
T_DC13:DG4_P
12
0.875
-0.252
-0.375
-0.106
8.484
1
20
T
14
P
3
4.387
T_DA14:DT3_P
13
-0.512
0.311
0.330
0.113
-0.343
1
T
15
P
2
2.279
T_DG15:DC2_P
14
1.286
-0.032
0.911
0.364
0.659
1
19
T
16
P
1
4.661
T_DC16:DG1_P
15
1.746
1.356
0.556
-0.390
3.649
34.703
T
T
1
2
-6.601
D
D
5
4
3.681
-3.898
-1.051
1.366
TT_DC1DC2:DG4DG5_DD
1
-7.662
12.973
33.653
2.971
0.425
2.915
33.669
T
T
2
3
-6.198
D
D
4
3
3.018
-3.558
0.506
1.222
TT_DC2DG3:DC3DG4_DD
2
7.143
-12.444
32.737
2.643
0.198
3.477
45.593
T
T
3
4
-1.837
D
D
3
2
3.440
-1.421
-1.010
1.662
TT_DG3DA4:DT2DC3_DD
3
-5.106
6.603
45.300
2.277
0.828
3.043
35.057
T
T
4
5
12.040
D
D
2
1
3.025
7.189
0.883
-0.006
TT_DA4DC5:DG1DT2_DD
4
4.035
-6.758
34.103
-1.025
-0.896
2.490
25.652
T
T
7
8
-4.343
P
P
10
9
2.381
-1.918
0.865
-0.066
TT_DG7DC8:DG9DOC10_PP
5
4.338
-9.824
25.217
0.257
-1.028
4.052
40.994
T
T
8
9
27.206
P
P
9
8
4.238
18.406
-1.207
0.361
TT_DC8DG9:DC8DG9_PP
6
-3.108
4.594
36.661
-2.188
1.267
2.713
30.184
T
T
9
10
0.541
P
P
8
7
2.713
0.282
-0.371
0.282
TT_DG9DC10:DG7DC8_PP
7
0.195
-0.374
30.182
0.495
0.745
3.102
36.998
T
T
10
11
13.522
P
P
7
6
3.326
8.462
0.240
-0.195
TT_DC10DA11:DT6DG7_PP
8
-6.856
10.956
35.413
-1.451
-1.306
3.500
32.177
T
T
11
12
5.864
P
P
6
5
3.633
3.243
0.206
-0.993
TT_DA11DT12:DA5DT6_PP
9
-1.961
3.546
31.959
-2.425
-0.755
2.964
37.277
T
T
12
13
-1.941
P
P
5
4
2.973
-1.226
0.371
0.032
TT_DT12DC13:DG4DA5_PP
10
10.087
-15.968
35.913
0.200
0.657
3.063
37.945
T
T
13
14
16.967
P
P
4
3
3.301
10.885
0.079
-0.371
TT_DC13DA14:DT3DG4_PP
11
-1.618
2.521
36.371
-1.955
-0.327
3.198
32.196
T
T
14
15
10.726
P
P
3
2
3.368
5.895
0.093
-0.379
TT_DA14DG15:DC2DT3_PP
12
-4.752
8.646
31.316
-1.754
-1.031
3.058
40.939
T
T
15
16
7.391
P
P
2
1
3.145
5.154
0.179
-0.571
TT_DG15DC16:DG1DC2_PP
13
2.236
-3.206
40.568
-1.354
-0.023
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-01-28
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1bpx is Human DNA Polymerase Beta Complexed With Gapped DNA
1bpy is Human DNA Polymerase Beta Complexed With Gapped DNA and Ddctp
1MQ2 IS Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP
RCSB
Y
RCSB
2002-09-13
REL
MG
MAGNESIUM ION
NA
SODIUM ION
DCP
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
HOH
water
1BPY
PDB
experimental model
MG
339
5
MG
MG
339
A
NA
341
6
NA
NA
341
A
NA
342
6
NA
NA
342
A
DCP
338
7
DCP
DCP
338
A
HOH
27
8
HOH
HOH
27
T
HOH
39
8
HOH
HOH
39
T
HOH
53
8
HOH
HOH
53
T
HOH
63
8
HOH
HOH
63
T
HOH
344
8
HOH
HOH
344
P
HOH
8
8
HOH
HOH
345
P
HOH
10
8
HOH
HOH
346
P
HOH
28
8
HOH
HOH
347
P
HOH
34
8
HOH
HOH
34
D
HOH
346
8
HOH
HOH
346
D
HOH
345
8
HOH
HOH
345
A
HOH
343
8
HOH
HOH
346
A
HOH
347
8
HOH
HOH
347
A
HOH
1
8
HOH
HOH
348
A
HOH
2
8
HOH
HOH
349
A
HOH
3
8
HOH
HOH
350
A
HOH
4
8
HOH
HOH
351
A
HOH
5
8
HOH
HOH
352
A
HOH
6
8
HOH
HOH
353
A
HOH
7
8
HOH
HOH
354
A
HOH
9
8
HOH
HOH
355
A
HOH
11
8
HOH
HOH
356
A
HOH
12
8
HOH
HOH
357
A
HOH
13
8
HOH
HOH
358
A
HOH
14
8
HOH
HOH
359
A
HOH
15
8
HOH
HOH
360
A
HOH
16
8
HOH
HOH
361
A
HOH
17
8
HOH
HOH
362
A
HOH
18
8
HOH
HOH
363
A
HOH
19
8
HOH
HOH
364
A
HOH
20
8
HOH
HOH
365
A
HOH
21
8
HOH
HOH
366
A
HOH
22
8
HOH
HOH
367
A
HOH
23
8
HOH
HOH
368
A
HOH
24
8
HOH
HOH
369
A
HOH
25
8
HOH
HOH
370
A
HOH
26
8
HOH
HOH
371
A
HOH
29
8
HOH
HOH
372
A
HOH
30
8
HOH
HOH
373
A
HOH
31
8
HOH
HOH
374
A
HOH
32
8
HOH
HOH
375
A
HOH
33
8
HOH
HOH
376
A
HOH
35
8
HOH
HOH
377
A
HOH
36
8
HOH
HOH
378
A
HOH
37
8
HOH
HOH
379
A
HOH
38
8
HOH
HOH
380
A
HOH
40
8
HOH
HOH
381
A
HOH
41
8
HOH
HOH
382
A
HOH
42
8
HOH
HOH
383
A
HOH
43
8
HOH
HOH
384
A
HOH
44
8
HOH
HOH
385
A
HOH
45
8
HOH
HOH
386
A
HOH
46
8
HOH
HOH
387
A
HOH
47
8
HOH
HOH
388
A
HOH
48
8
HOH
HOH
389
A
HOH
49
8
HOH
HOH
390
A
HOH
50
8
HOH
HOH
391
A
HOH
51
8
HOH
HOH
392
A
HOH
52
8
HOH
HOH
393
A
HOH
54
8
HOH
HOH
394
A
HOH
55
8
HOH
HOH
395
A
HOH
56
8
HOH
HOH
396
A
HOH
57
8
HOH
HOH
397
A
HOH
58
8
HOH
HOH
398
A
HOH
59
8
HOH
HOH
399
A
HOH
60
8
HOH
HOH
400
A
HOH
61
8
HOH
HOH
401
A
HOH
62
8
HOH
HOH
402
A
HOH
64
8
HOH
HOH
403
A
HOH
65
8
HOH
HOH
404
A
HOH
66
8
HOH
HOH
405
A
HOH
67
8
HOH
HOH
406
A
HOH
68
8
HOH
HOH
407
A
HOH
69
8
HOH
HOH
408
A
HOH
70
8
HOH
HOH
409
A
HOH
71
8
HOH
HOH
410
A
HOH
72
8
HOH
HOH
411
A
HOH
73
8
HOH
HOH
412
A
C
1
n
1
DC
1
T
C
2
n
2
DC
2
T
G
3
n
3
DG
3
T
A
4
n
4
DA
4
T
C
5
n
5
DC
5
T
8OG
6
n
6
8OG
6
T
G
7
n
7
DG
7
T
C
8
n
8
DC
8
T
G
9
n
9
DG
9
T
C
10
n
10
DC
10
T
A
11
n
11
DA
11
T
T
12
n
12
DT
12
T
C
13
n
13
DC
13
T
A
14
n
14
DA
14
T
G
15
n
15
DG
15
T
C
16
n
16
DC
16
T
G
1
n
1
DG
1
P
C
2
n
2
DC
2
P
T
3
n
3
DT
3
P
G
4
n
4
DG
4
P
A
5
n
5
DA
5
P
T
6
n
6
DT
6
P
G
7
n
7
DG
7
P
C
8
n
8
DC
8
P
G
9
n
9
DG
9
P
DOC
10
n
10
DOC
10
P
G
1
n
1
DG
1
D
T
2
n
2
DT
2
D
C
3
n
3
DC
3
D
G
4
n
4
DG
4
D
G
5
n
5
DG
5
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
ASP
17
n
17
ASP
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
PHE
25
n
25
PHE
25
A
GLU
26
n
26
GLU
26
A
LYS
27
n
27
LYS
27
A
ASN
28
n
28
ASN
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
GLN
31
n
31
GLN
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
HIS
34
n
34
HIS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ARG
40
n
40
ARG
40
A
LYS
41
n
41
LYS
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
PRO
50
n
50
PRO
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
GLN
90
n
90
GLN
90
A
ASP
91
n
91
ASP
91
A
ASP
92
n
92
ASP
92
A
THR
93
n
93
THR
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
SER
96
n
96
SER
96
A
ILE
97
n
97
ILE
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
PRO
108
n
108
PRO
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
ARG
112
n
112
ARG
112
A
LYS
113
n
113
LYS
113
A
PHE
114
n
114
PHE
114
A
VAL
115
n
115
VAL
115
A
ASP
116
n
116
ASP
116
A
GLU
117
n
117
GLU
117
A
GLY
118
n
118
GLY
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
THR
121
n
121
THR
121
A
LEU
122
n
122
LEU
122
A
GLU
123
n
123
GLU
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
LYS
127
n
127
LYS
127
A
ASN
128
n
128
ASN
128
A
GLU
129
n
129
GLU
129
A
ASP
130
n
130
ASP
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
HIS
135
n
135
HIS
135
A
GLN
136
n
136
GLN
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
PHE
143
n
143
PHE
143
A
GLY
144
n
144
GLY
144
A
ASP
145
n
145
ASP
145
A
PHE
146
n
146
PHE
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
ARG
149
n
149
ARG
149
A
ILE
150
n
150
ILE
150
A
PRO
151
n
151
PRO
151
A
ARG
152
n
152
ARG
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
MET
155
n
155
MET
155
A
LEU
156
n
156
LEU
156
A
GLN
157
n
157
GLN
157
A
MET
158
n
158
MET
158
A
GLN
159
n
159
GLN
159
A
ASP
160
n
160
ASP
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLU
165
n
165
GLU
165
A
VAL
166
n
166
VAL
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
VAL
169
n
169
VAL
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
GLU
172
n
172
GLU
172
A
TYR
173
n
173
TYR
173
A
ILE
174
n
174
ILE
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
CYS
178
n
178
CYS
178
A
GLY
179
n
179
GLY
179
A
SER
180
n
180
SER
180
A
PHE
181
n
181
PHE
181
A
ARG
182
n
182
ARG
182
A
ARG
183
n
183
ARG
183
A
GLY
184
n
184
GLY
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
SER
188
n
188
SER
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
MET
191
n
191
MET
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
THR
196
n
196
THR
196
A
HIS
197
n
197
HIS
197
A
PRO
198
n
198
PRO
198
A
SER
199
n
199
SER
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
SER
202
n
202
SER
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
GLN
207
n
207
GLN
207
A
PRO
208
n
208
PRO
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
LEU
211
n
211
LEU
211
A
HIS
212
n
212
HIS
212
A
GLN
213
n
213
GLN
213
A
VAL
214
n
214
VAL
214
A
VAL
215
n
215
VAL
215
A
GLU
216
n
216
GLU
216
A
GLN
217
n
217
GLN
217
A
LEU
218
n
218
LEU
218
A
GLN
219
n
219
GLN
219
A
LYS
220
n
220
LYS
220
A
VAL
221
n
221
VAL
221
A
HIS
222
n
222
HIS
222
A
PHE
223
n
223
PHE
223
A
ILE
224
n
224
ILE
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
SER
229
n
229
SER
229
A
LYS
230
n
230
LYS
230
A
GLY
231
n
231
GLY
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
LYS
234
n
234
LYS
234
A
PHE
235
n
235
PHE
235
A
MET
236
n
236
MET
236
A
GLY
237
n
237
GLY
237
A
VAL
238
n
238
VAL
238
A
CYS
239
n
239
CYS
239
A
GLN
240
n
240
GLN
240
A
LEU
241
n
241
LEU
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
LYS
244
n
244
LYS
244
A
ASN
245
n
245
ASN
245
A
ASP
246
n
246
ASP
246
A
GLU
247
n
247
GLU
247
A
LYS
248
n
248
LYS
248
A
GLU
249
n
249
GLU
249
A
TYR
250
n
250
TYR
250
A
PRO
251
n
251
PRO
251
A
HIS
252
n
252
HIS
252
A
ARG
253
n
253
ARG
253
A
ARG
254
n
254
ARG
254
A
ILE
255
n
255
ILE
255
A
ASP
256
n
256
ASP
256
A
ILE
257
n
257
ILE
257
A
ARG
258
n
258
ARG
258
A
LEU
259
n
259
LEU
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
GLN
264
n
264
GLN
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
CYS
267
n
267
CYS
267
A
GLY
268
n
268
GLY
268
A
VAL
269
n
269
VAL
269
A
LEU
270
n
270
LEU
270
A
TYR
271
n
271
TYR
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
GLY
274
n
274
GLY
274
A
SER
275
n
275
SER
275
A
ASP
276
n
276
ASP
276
A
ILE
277
n
277
ILE
277
A
PHE
278
n
278
PHE
278
A
ASN
279
n
279
ASN
279
A
LYS
280
n
280
LYS
280
A
ASN
281
n
281
ASN
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ALA
284
n
284
ALA
284
A
HIS
285
n
285
HIS
285
A
ALA
286
n
286
ALA
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
LYS
289
n
289
LYS
289
A
GLY
290
n
290
GLY
290
A
PHE
291
n
291
PHE
291
A
THR
292
n
292
THR
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
GLU
295
n
295
GLU
295
A
TYR
296
n
296
TYR
296
A
THR
297
n
297
THR
297
A
ILE
298
n
298
ILE
298
A
ARG
299
n
299
ARG
299
A
PRO
300
n
300
PRO
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
VAL
306
n
306
VAL
306
A
ALA
307
n
307
ALA
307
A
GLY
308
n
308
GLY
308
A
GLU
309
n
309
GLU
309
A
PRO
310
n
310
PRO
310
A
LEU
311
n
311
LEU
311
A
PRO
312
n
312
PRO
312
A
VAL
313
n
313
VAL
313
A
ASP
314
n
314
ASP
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
LYS
317
n
317
LYS
317
A
ASP
318
n
318
ASP
318
A
ILE
319
n
319
ILE
319
A
PHE
320
n
320
PHE
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ILE
323
n
323
ILE
323
A
GLN
324
n
324
GLN
324
A
TRP
325
n
325
TRP
325
A
LYS
326
n
326
LYS
326
A
TYR
327
n
327
TYR
327
A
ARG
328
n
328
ARG
328
A
GLU
329
n
329
GLU
329
A
PRO
330
n
330
PRO
330
A
LYS
331
n
331
LYS
331
A
ASP
332
n
332
ASP
332
A
ARG
333
n
333
ARG
333
A
SER
334
n
334
SER
334
A
GLU
335
n
335
GLU
335
A
author_defined_assembly
4
tetrameric
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
P
HOH
344
J
O
HOH
1_555
84.4
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
A
THR
101
D
O
THR
101
1_555
166.3
P
HOH
344
J
O
HOH
1_555
A
NA
341
F
NA
NA
1_555
A
THR
101
D
O
THR
101
1_555
82.0
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
A
VAL
103
D
O
VAL
103
1_555
86.4
P
HOH
344
J
O
HOH
1_555
A
NA
341
F
NA
NA
1_555
A
VAL
103
D
O
VAL
103
1_555
163.6
A
THR
101
D
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
VAL
103
D
O
VAL
103
1_555
107.3
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
84.7
P
HOH
344
J
O
HOH
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
77.6
A
THR
101
D
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
94.2
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
A
ILE
106
D
O
ILE
106
1_555
88.1
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
99.2
P
HOH
344
J
O
HOH
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
104.1
A
THR
101
D
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
82.5
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
90.7
A
ILE
106
D
O
ILE
106
1_555
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
175.9
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
D
HOH
346
K
O
HOH
1_555
85.6
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
A
LYS
60
D
O
LYS
60
1_555
174.9
D
HOH
346
K
O
HOH
1_555
A
NA
342
G
NA
NA
1_555
A
LYS
60
D
O
LYS
60
1_555
94.8
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
A
LEU
62
D
O
LEU
62
1_555
98.9
D
HOH
346
K
O
HOH
1_555
A
NA
342
G
NA
NA
1_555
A
LEU
62
D
O
LEU
62
1_555
170.6
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
A
LEU
62
D
O
LEU
62
1_555
81.4
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
99.9
D
HOH
346
K
O
HOH
1_555
A
NA
342
G
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
91.2
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
75.0
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
G
NA
NA
1_555
A
VAL
65
D
O
VAL
65
1_555
96.1
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
91.1
D
HOH
346
K
O
HOH
1_555
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
92.8
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
94.0
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
78.9
A
VAL
65
D
O
VAL
65
1_555
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
168.5
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
ASP
192
D
OD2
ASP
192
1_555
89.6
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1A
DCP
1_555
81.9
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1A
DCP
1_555
90.7
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O2B
DCP
1_555
173.5
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O2B
DCP
1_555
94.5
A
DCP
338
H
O1A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O2B
DCP
1_555
93.0
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O3A
DCP
1_555
123.6
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O3A
DCP
1_555
114.5
A
DCP
338
H
O1A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O3A
DCP
1_555
49.9
A
DCP
338
H
O2B
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O3A
DCP
1_555
50.0
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1G
DCP
1_555
93.2
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1G
DCP
1_555
174.6
A
DCP
338
H
O1A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1G
DCP
1_555
94.2
A
DCP
338
H
O2B
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1G
DCP
1_555
83.1
A
DCP
338
H
O3A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
DCP
338
H
O1G
DCP
1_555
67.5
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
90.9
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
91.3
A
DCP
338
H
O1A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
172.5
A
DCP
338
H
O2B
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
94.1
A
DCP
338
H
O3A
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
134.9
A
DCP
338
H
O1G
DCP
1_555
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
84.1
T
8OG
6
A
8OG
6
DG
P
DOC
10
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
B
DOC
10
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
150
D
N
ILE
150
A
O
SER
188
D
O
SER
188
A
N
THR
176
D
N
THR
176
A
O
LEU
194
D
O
LEU
194
A
N
LEU
195
D
N
LEU
195
A
O
ARG
258
D
O
ARG
258
A
O
ARG
253
D
O
ARG
253
A
N
CYS
239
D
N
CYS
239
A
O
VAL
238
D
O
VAL
238
A
N
ASP
226
D
N
ASP
226
A
N
THR
201
D
N
THR
201
A
O
SER
204
D
O
SER
204
A
N
THR
292
D
N
THR
292
A
O
ARG
299
D
O
ARG
299
1
A
MET
1
D
MET
1
1
Y
1
A
SER
2
D
SER
2
1
Y
1
A
LYS
3
D
LYS
3
1
Y
1
A
ARG
4
D
ARG
4
1
Y
1
A
LYS
5
D
LYS
5
1
Y
1
A
ALA
6
D
ALA
6
1
Y
1
A
PRO
7
D
PRO
7
1
Y
1
A
GLN
8
D
GLN
8
1
Y
1
A
GLU
9
D
GLU
9
1
Y
1
D
D
P
OP3
DG
DG
1
1
-0.086
0.012
1.607
1.521
N
1
A
VAL
29
-76.31
-71.62
1
A
PRO
50
-80.24
31.12
1
A
SER
55
-176.49
146.59
1
A
ASP
91
-49.20
102.31
1
A
PHE
146
-57.00
-2.09
1
A
CYS
178
-82.49
-129.06
1
A
SER
202
-58.71
7.63
1
A
GLU
203
-159.87
0.40
1
A
LYS
209
-96.46
40.91
1
A
LEU
228
-69.69
-91.62
1
A
LYS
230
-160.17
106.32
1
A
LYS
244
-82.33
-143.63
1
A
ASP
246
66.62
-13.51
1
A
PHE
272
-57.41
-6.51
1
A
LEU
301
-94.01
56.24
PROTEIN.PARAM
DNA-RNA.PARAM
WATER.PARAM
ION.PARAM
22.42
-14.235
0.0
-15.806
18.549
0.0
-4.313
REFINEMENT PARAMETERS FOR 8-OXO-G ARE BASED ON SEVERAL SMALL MOLECULE OBSERVATIONS. DIHEDRAL RESTRAINTS FROM DNA-RNA.PARAM WERE DISABLED TO ALLOW FOR DEVIATIONS FROM CANONICAL B-FORM VALUES, WHICH HAVE BEEN OBSERVED IN HIGH-RESOLUTION DATA FROM SIMILAR POLYMERASE BETA DNA COMPLEXES.
0.295
0.235
0.246
0.246
2.8
20.0
481
10177
10177
4.7
97.8
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1BPY
Engh & Huber
10.0
0.2998
2.8
20.0
78
3354
31
632
2613
0.005
1.10
1.324
1.855
2.186
2.869
2.8
20.0
1MQ3
10209
-3.0
0.108
1
5.5
2.51
97.8
0.339
2.80
2.93
1.9
95.9
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
A
ASN
12
D
ASN
12
HELX_P
A
VAL
29
D
VAL
29
1
1
18
A
ALA
32
D
ALA
32
HELX_P
A
TYR
49
D
TYR
49
1
2
18
A
SER
55
D
SER
55
HELX_P
A
LYS
61
D
LYS
61
1
3
7
A
THR
67
D
THR
67
HELX_P
A
GLY
80
D
GLY
80
1
4
14
A
LEU
82
D
LEU
82
HELX_P
A
ASP
91
D
ASP
91
1
5
10
A
THR
93
D
THR
93
HELX_P
A
THR
101
D
THR
101
1
6
9
A
GLY
107
D
GLY
107
HELX_P
A
ASP
116
D
ASP
116
1
7
10
A
THR
121
D
THR
121
HELX_P
A
ASN
128
D
ASN
128
1
8
8
A
ASN
133
D
ASN
133
HELX_P
A
PHE
143
D
PHE
143
1
9
11
A
GLY
144
D
GLY
144
HELX_P
A
LYS
148
D
LYS
148
5
10
5
A
ARG
152
D
ARG
152
HELX_P
A
ASP
170
D
ASP
170
1
11
19
A
CYS
178
D
CYS
178
HELX_P
A
ARG
183
D
ARG
183
1
12
6
A
LYS
209
D
LYS
209
HELX_P
A
VAL
221
D
VAL
221
1
13
13
A
PRO
261
D
PRO
261
HELX_P
A
ASP
263
D
ASP
263
5
14
3
A
GLN
264
D
GLN
264
HELX_P
A
GLY
274
D
GLY
274
1
15
11
A
SER
275
D
SER
275
HELX_P
A
GLY
290
D
GLY
290
1
16
16
A
SER
315
D
SER
315
HELX_P
A
ILE
323
D
ILE
323
1
17
9
A
GLU
329
D
GLU
329
HELX_P
A
ARG
333
D
ARG
333
5
18
5
covale
1.605
both
T
DC
5
A
O3'
DC
5
1_555
T
8OG
6
A
P
8OG
6
1_555
covale
1.608
both
T
8OG
6
A
O3'
8OG
6
1_555
T
DG
7
A
P
DG
7
1_555
covale
1.609
both
P
DG
9
B
O3'
DG
9
1_555
P
DOC
10
B
P
DOC
10
1_555
metalc
2.247
P
DG
9
B
OP1
DG
9
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.247
P
HOH
344
J
O
HOH
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.497
D
DC
3
C
OP1
DC
3
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.433
D
HOH
346
K
O
HOH
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.387
A
LYS
60
D
O
LYS
60
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.490
A
LEU
62
D
O
LEU
62
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.517
A
VAL
65
D
O
VAL
65
1_555
A
NA
342
G
NA
NA
1_555
metalc
2.250
A
THR
101
D
O
THR
101
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.450
A
VAL
103
D
O
VAL
103
1_555
A
NA
341
F
NA
NA
1_555
metalc
2.587
A
ILE
106
D
O
ILE
106
1_555
A
NA
341
F
NA
NA
1_555
metalc
1.828
A
ASP
190
D
OD1
ASP
190
1_555
A
MG
339
E
MG
MG
1_555
metalc
2.111
A
ASP
192
D
OD2
ASP
192
1_555
A
MG
339
E
MG
MG
1_555
metalc
1.979
A
DCP
338
H
O1A
DCP
1_555
A
MG
339
E
MG
MG
1_555
metalc
1.942
A
DCP
338
H
O2B
DCP
1_555
A
MG
339
E
MG
MG
1_555
metalc
3.141
A
DCP
338
H
O3A
DCP
1_555
A
MG
339
E
MG
MG
1_555
metalc
2.092
A
DCP
338
H
O1G
DCP
1_555
A
MG
339
E
MG
MG
1_555
metalc
1.980
A
MG
339
E
MG
MG
1_555
A
HOH
346
L
O
HOH
1_555
metalc
2.600
A
NA
341
F
NA
NA
1_555
A
HOH
345
L
O
HOH
1_555
metalc
2.549
A
NA
342
G
NA
NA
1_555
A
HOH
347
L
O
HOH
1_555
hydrog
DC-DG PAIR
T
DC
1
A
O2
DC
1
1_555
D
DG
5
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
2
A
N3
DC
2
1_555
D
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
A
N4
DC
2
1_555
D
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
2
A
O2
DC
2
1_555
D
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DG
3
A
N1
DG
3
1_555
D
DC
3
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
A
N2
DG
3
1_555
D
DC
3
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
T
DG
3
A
O6
DG
3
1_555
D
DC
3
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
T
DA
4
A
N1
DA
4
1_555
D
DT
2
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
T
DA
4
A
N6
DA
4
1_555
D
DT
2
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
T
DC
5
A
N3
DC
5
1_555
D
DG
1
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
A
N4
DC
5
1_555
D
DG
1
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
5
A
O2
DC
5
1_555
D
DG
1
C
N2
DG
1
1_555
hydrog
WATSON-CRICK
T
DG
7
A
N1
DG
7
1_555
P
DOC
10
B
N3
DOC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
A
N2
DG
7
1_555
P
DOC
10
B
O2
DOC
10
1_555
hydrog
WATSON-CRICK
T
DG
7
A
O6
DG
7
1_555
P
DOC
10
B
N4
DOC
10
1_555
hydrog
WATSON-CRICK
T
DC
8
A
N3
DC
8
1_555
P
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
A
N4
DC
8
1_555
P
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
8
A
O2
DC
8
1_555
P
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
T
DG
9
A
N1
DG
9
1_555
P
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
A
N2
DG
9
1_555
P
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
T
DG
9
A
O6
DG
9
1_555
P
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
T
DC
10
A
N3
DC
10
1_555
P
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
A
N4
DC
10
1_555
P
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
T
DC
10
A
O2
DC
10
1_555
P
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
T
DA
11
A
N1
DA
11
1_555
P
DT
6
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
T
DA
11
A
N6
DA
11
1_555
P
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
T
DT
12
A
N3
DT
12
1_555
P
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
T
DT
12
A
O4
DT
12
1_555
P
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
T
DC
13
A
N3
DC
13
1_555
P
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
A
N4
DC
13
1_555
P
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
13
A
O2
DC
13
1_555
P
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DA
14
A
N1
DA
14
1_555
P
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
T
DA
14
A
N6
DA
14
1_555
P
DT
3
B
O4
DT
3
1_555
hydrog
DG-DC PAIR
T
DG
15
A
N1
DG
15
1_555
P
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
T
DC
16
A
N3
DC
16
1_555
P
DG
1
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
A
N4
DC
16
1_555
P
DG
1
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
16
A
O2
DC
16
1_555
P
DG
1
B
N2
DG
1
1_555
TRANSFERASE/DNA
TRANSFERASE, DNA, TRANSFERASE-DNA COMPLEX
A
GLY
274
D
GLY
274
1
A
SER
275
D
SER
275
0.52
DPOB_HUMAN
UNP
4
1
P06746
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
1MQ3
PDB
1
1MQ3
1MQ3
PDB
2
1MQ3
1MQ3
PDB
3
1MQ3
1
335
1MQ3
1
335
P06746
A
1
1
335
1
16
1MQ3
1
16
1MQ3
T
2
1
16
1
10
1MQ3
1
10
1MQ3
P
3
1
10
1
5
1MQ3
1
5
1MQ3
D
4
1
5
2
5
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
150
D
ILE
150
A
PRO
151
D
PRO
151
A
SER
187
D
SER
187
A
SER
188
D
SER
188
A
ILE
174
D
ILE
174
A
VAL
177
D
VAL
177
A
MET
191
D
MET
191
A
THR
196
D
THR
196
A
ARG
253
D
ARG
253
A
LEU
259
D
LEU
259
A
LYS
234
D
LYS
234
A
CYS
239
D
CYS
239
A
ILE
224
D
ILE
224
A
LYS
230
D
LYS
230
A
PHE
200
D
PHE
200
A
THR
201
D
THR
201
A
SER
204
D
SER
204
A
THR
205
D
THR
205
A
PHE
291
D
PHE
291
A
ILE
293
D
ILE
293
A
ILE
298
D
ILE
298
A
PRO
300
D
PRO
300
BINDING SITE FOR RESIDUE MG A 339
A
MG
339
Software
4
BINDING SITE FOR RESIDUE NA A 341
A
NA
341
Software
6
BINDING SITE FOR RESIDUE NA A 342
A
NA
342
Software
6
BINDING SITE FOR RESIDUE DCP A 338
A
DCP
338
Software
20
A
ASP
190
D
ASP
190
4
1_555
A
ASP
192
D
ASP
192
4
1_555
A
DCP
338
H
DCP
4
1_555
A
HOH
346
L
HOH
4
1_555
A
THR
101
D
THR
101
6
1_555
A
VAL
103
D
VAL
103
6
1_555
A
ILE
106
D
ILE
106
6
1_555
A
HOH
345
L
HOH
6
1_555
P
DG
9
B
DG
9
6
1_555
P
HOH
344
J
HOH
6
1_555
A
LYS
60
D
LYS
60
6
1_555
A
LEU
62
D
LEU
62
6
1_555
A
VAL
65
D
VAL
65
6
1_555
A
HOH
347
L
HOH
6
1_555
D
DC
3
C
DC
3
6
1_555
D
HOH
346
K
HOH
6
1_555
A
ARG
149
D
ARG
149
20
1_555
A
GLY
179
D
GLY
179
20
1_555
A
SER
180
D
SER
180
20
1_555
A
ARG
183
D
ARG
183
20
1_555
A
GLY
189
D
GLY
189
20
1_555
A
ASP
190
D
ASP
190
20
1_555
A
ASP
192
D
ASP
192
20
1_555
A
TYR
271
D
TYR
271
20
1_555
A
PHE
272
D
PHE
272
20
1_555
A
THR
273
D
THR
273
20
1_555
A
GLY
274
D
GLY
274
20
1_555
A
ASP
276
D
ASP
276
20
1_555
A
ASN
279
D
ASN
279
20
1_555
A
MG
339
E
MG
20
1_555
A
HOH
346
L
HOH
20
1_555
A
HOH
354
L
HOH
20
1_555
A
HOH
389
L
HOH
20
1_555
P
DOC
10
B
DOC
10
20
1_555
T
8OG
6
A
8OG
6
20
1_555
T
DG
7
A
DG
7
20
1_555
4
P 1 21 1