0.017655 0.000000 0.000000 0.000000 0.013644 0.000000 0.000000 0.000000 0.012655 0.00000 0.00000 0.00000 Adler, M. Whitlow, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.640 73.290 79.020 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C23 H20 Cl3 N5 O4 S 568.860 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE non-polymer US Biochemistry BICHAW 0033 0006-2960 41 15514 15523 10.1021/bi0264061 12501180 Crystal Structures of Two Potent Nonamidine Inhibitors Bound to Factor Xa 2002 US Biochemistry BICHAW 0033 0006-2960 39 12534 12542 10.1021/bi001477q Preparation, Characterization and the Crystal Structure of the Inhibitor Zk-807834 (Ci-1031) Complexed with Factor Xa 2000 US J.Med.Chem. JMCMAR 0151 0022-2623 43 3226 3232 10.1021/jm000940u Crystal Structures of Human Factor Xa Complexed with Potent Inhibitors 2000 US J.Med.Chem. JMCMAR 0151 0022-2623 41 3557 3562 10.1021/jm980280h Discovery of N-[2-[5-[Amino(imino)methyl]-2-hydroxyphenoxy]-3,5-difluoro- 6-[3-(4,5-dihydro-1-methyl-1H-imidazol-2-yl)phenoxy]pyridin-4-yl]-N-methylglycine (ZK-807834): A Potent, Selective, and Orally Active Inhibitor of the Blood Coagulation Enzyme Factor Xa 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-05-30 ADSC QUANTUM 4 SI(111) SINGLE WAVELENGTH M x-ray 1 1.033 1.0 BL9-2 SSRL 1.033 1.033 SYNCHROTRON SSRL BEAMLINE BL9-2 26346.000 COAGULATION FACTOR X HEAVY CHAIN 3.4.21.6 CATALYTIC DOMAIN 1 nat polymer 5460.121 COAGULATION FACTOR X LIGHT CHAIN 3.4.21.6 EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2 1 nat polymer 40.078 CALCIUM ION 1 syn non-polymer 568.860 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE 1 syn non-polymer 92.094 GLYCEROL 3 syn non-polymer 18.015 water 164 nat water stuart factor stuart factor no no IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK A polypeptide(L) no no KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human EXTRACTED FROM BLOOD Homo sample 9606 Homo sapiens human EXTRACTED FROM BLOOD Homo sample 9606 Homo sapiens 1 2.44 51.2 VAPOR DIFFUSION, HANGING DROP 7.50 A THREE-FOLD EXCESS OF A PROPRIETARY FACTOR XA INHIBITOR WITH PICOMOLAR AFFINITY WAS ADDED TO THE DES-GLA-FACTOR XA. THIS INHIBITOR IS BASED ON THE SAME TEMPLATE AS XLD IN 1MQ6. THE PROTEIN WAS THEN CONCENTRATED TO 12-17 MG/ML. CRYSTALS WERE GROWN USING 2 UL OF COMPLEX WITH 2 UL OF RESERVOIR CONTAINING 15-21% PEG1500 AND 10 MM CACL2. 30-40 UL SITTING DROPS CONTAINING SATURATED INHIBITOR (5 MM) IN 21% PEG1500, 5 MM CACL2, 20 MM NACL, 25 MM TRIS PH 7.5 (CRYSTAL SOAKING SOLUTION) WERE EQUILIBRATED OVER A 1 ML RESERVOIR CONTAINING THE CRYSTAL SOAKING SOLUTION FOR 1 TO 2 DAYS. A SINGLE FACTOR XA CRYSTAL WAS TRANSFERRED USING A MOUNTED CRYOLOOP INTO ONE OF THESE SITTING DROPS AND ALLOWED TO SOAK FOR THREE OR MORE DAYS. AFTER THE INITIAL SOAK, EACH CRYSTAL WAS THEN TRANSFERRED TO AN UNUSED DROP AND ALLOWED TO SOAK FOR SECOND PERIOD OF THREE OR MORE DAYS. pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 pdbx_unobs_or_zero_occ_atoms software repository Initial release Version format compliance Non-polymer description Version format compliance Advisory Refinement description 1 0 2003-01-28 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 _software.name FACTOR XA COMPLEXED TO ZK807834 FACTOR XA COMPLEXED TO RPR128515 FACTOR XA COMPLEXED TO RPR208707 FACTOR XA COMPLEXED TO RPR208815 TRYSPIN COMPLEXED TO FACTOR XA INHIBITOR TRYSPIN COMPLEXED TO FACTOR XA INHIBITOR Crystal Structure of 3-chloro-N-[4-chloro-2-[[(4-chlorophenyl)amino]carbonyl]phenyl]-4-[(4-methyl-1-piperazinyl)methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). FACTOR XA FORMS A COMPLEX WITH FACTOR VA IN THE PRESENCE OF CALCIUM AND A PHOSPHOLIPID MEMBRANE TO PRODUCE THE PROTHROMBINASE COMPLEX. THIS ENTRY CONTAINS THE EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2(L) AND THE CATALYTIC DOMAIN (A) OF FACTOR XA IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT. THE COORDINATES DO NOT CONTAIN THE GLA DOMAIN OR THE EPIDERMAL GROWTH FACTOR LIKE DOMAIN 1 OF FACTOR XA. ALTHOUGH THE ASYMMETRIC UNIT CONTAINS A FUNCTIONAL PROTEASE, IT DOES HAVE THE SAME SPECIFICITY AS THE PROTHROMBINASE COMPLEX. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). RCSB Y RCSB 2002-09-13 REL REL CA CALCIUM ION XLD 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE GOL GLYCEROL HOH water CA 501 3 CA CA 501 A LIG 500 4 XLD XLD 500 A GOL 502 5 GOL GOL 502 A GOL 503 5 GOL GOL 503 A GOL 504 5 GOL GOL 504 A HOH 600 6 HOH HOH 600 A HOH 601 6 HOH HOH 601 A HOH 602 6 HOH HOH 602 A HOH 603 6 HOH HOH 603 A HOH 604 6 HOH HOH 604 A HOH 605 6 HOH HOH 605 A HOH 606 6 HOH HOH 606 A HOH 607 6 HOH HOH 607 A HOH 609 6 HOH HOH 609 A HOH 610 6 HOH HOH 610 A HOH 611 6 HOH HOH 611 A HOH 612 6 HOH HOH 612 A HOH 613 6 HOH HOH 613 A HOH 614 6 HOH HOH 614 A HOH 615 6 HOH HOH 615 A HOH 618 6 HOH HOH 618 A HOH 619 6 HOH HOH 619 A HOH 620 6 HOH HOH 620 A HOH 621 6 HOH HOH 621 A HOH 622 6 HOH HOH 622 A HOH 624 6 HOH HOH 624 A HOH 625 6 HOH HOH 625 A HOH 626 6 HOH HOH 626 A HOH 627 6 HOH HOH 627 A HOH 628 6 HOH HOH 628 A HOH 629 6 HOH HOH 629 A HOH 630 6 HOH HOH 630 A HOH 631 6 HOH HOH 631 A HOH 632 6 HOH HOH 632 A HOH 633 6 HOH HOH 633 A HOH 634 6 HOH HOH 634 A HOH 635 6 HOH HOH 635 A HOH 636 6 HOH HOH 636 A HOH 637 6 HOH HOH 637 A HOH 638 6 HOH HOH 638 A HOH 639 6 HOH HOH 639 A HOH 640 6 HOH HOH 640 A HOH 641 6 HOH HOH 641 A HOH 642 6 HOH HOH 642 A HOH 644 6 HOH HOH 644 A HOH 645 6 HOH HOH 645 A HOH 647 6 HOH HOH 647 A HOH 648 6 HOH HOH 648 A HOH 649 6 HOH HOH 649 A HOH 651 6 HOH HOH 651 A HOH 654 6 HOH HOH 654 A HOH 655 6 HOH HOH 655 A HOH 657 6 HOH HOH 657 A HOH 658 6 HOH HOH 658 A HOH 660 6 HOH HOH 660 A HOH 661 6 HOH HOH 661 A HOH 662 6 HOH HOH 662 A HOH 663 6 HOH HOH 663 A HOH 664 6 HOH HOH 664 A HOH 665 6 HOH HOH 665 A HOH 666 6 HOH HOH 666 A HOH 667 6 HOH HOH 667 A HOH 669 6 HOH HOH 669 A HOH 670 6 HOH HOH 670 A HOH 671 6 HOH HOH 671 A HOH 672 6 HOH HOH 672 A HOH 673 6 HOH HOH 673 A HOH 674 6 HOH HOH 674 A HOH 675 6 HOH HOH 675 A HOH 677 6 HOH HOH 677 A HOH 678 6 HOH HOH 678 A HOH 679 6 HOH HOH 679 A HOH 680 6 HOH HOH 680 A HOH 681 6 HOH HOH 681 A HOH 682 6 HOH HOH 682 A HOH 683 6 HOH HOH 683 A HOH 684 6 HOH HOH 684 A HOH 685 6 HOH HOH 685 A HOH 686 6 HOH HOH 686 A HOH 687 6 HOH HOH 687 A HOH 688 6 HOH HOH 688 A HOH 691 6 HOH HOH 691 A HOH 693 6 HOH HOH 693 A HOH 694 6 HOH HOH 694 A HOH 696 6 HOH HOH 696 A HOH 697 6 HOH HOH 697 A HOH 698 6 HOH HOH 698 A HOH 699 6 HOH HOH 699 A HOH 700 6 HOH HOH 700 A HOH 701 6 HOH HOH 701 A HOH 702 6 HOH HOH 702 A HOH 703 6 HOH HOH 703 A HOH 704 6 HOH HOH 704 A HOH 705 6 HOH HOH 705 A HOH 706 6 HOH HOH 706 A HOH 707 6 HOH HOH 707 A HOH 708 6 HOH HOH 708 A HOH 709 6 HOH HOH 709 A HOH 710 6 HOH HOH 710 A HOH 711 6 HOH HOH 711 A HOH 712 6 HOH HOH 712 A HOH 713 6 HOH HOH 713 A HOH 714 6 HOH HOH 714 A HOH 715 6 HOH HOH 715 A HOH 716 6 HOH HOH 716 A HOH 717 6 HOH HOH 717 A HOH 718 6 HOH HOH 718 A HOH 719 6 HOH HOH 719 A HOH 720 6 HOH HOH 720 A HOH 721 6 HOH HOH 721 A HOH 722 6 HOH HOH 722 A HOH 724 6 HOH HOH 724 A HOH 726 6 HOH HOH 726 A HOH 727 6 HOH HOH 727 A HOH 732 6 HOH HOH 732 A HOH 734 6 HOH HOH 734 A HOH 735 6 HOH HOH 735 A HOH 736 6 HOH HOH 736 A HOH 738 6 HOH HOH 738 A HOH 739 6 HOH HOH 739 A HOH 740 6 HOH HOH 740 A HOH 742 6 HOH HOH 742 A HOH 743 6 HOH HOH 743 A HOH 746 6 HOH HOH 746 A HOH 747 6 HOH HOH 747 A HOH 748 6 HOH HOH 748 A HOH 749 6 HOH HOH 749 A HOH 750 6 HOH HOH 750 A HOH 753 6 HOH HOH 753 A HOH 754 6 HOH HOH 754 A HOH 755 6 HOH HOH 755 A HOH 756 6 HOH HOH 756 A HOH 757 6 HOH HOH 757 A HOH 758 6 HOH HOH 758 A HOH 759 6 HOH HOH 759 A HOH 760 6 HOH HOH 760 A HOH 761 6 HOH HOH 761 A HOH 762 6 HOH HOH 762 A HOH 608 6 HOH HOH 608 L HOH 616 6 HOH HOH 616 L HOH 617 6 HOH HOH 617 L HOH 623 6 HOH HOH 623 L HOH 643 6 HOH HOH 643 L HOH 646 6 HOH HOH 646 L HOH 650 6 HOH HOH 650 L HOH 652 6 HOH HOH 652 L HOH 653 6 HOH HOH 653 L HOH 656 6 HOH HOH 656 L HOH 659 6 HOH HOH 659 L HOH 668 6 HOH HOH 668 L HOH 676 6 HOH HOH 676 L HOH 689 6 HOH HOH 689 L HOH 690 6 HOH HOH 690 L HOH 692 6 HOH HOH 692 L HOH 695 6 HOH HOH 695 L HOH 723 6 HOH HOH 723 L HOH 725 6 HOH HOH 725 L HOH 728 6 HOH HOH 728 L HOH 729 6 HOH HOH 729 L HOH 730 6 HOH HOH 730 L HOH 731 6 HOH HOH 731 L HOH 733 6 HOH HOH 733 L HOH 737 6 HOH HOH 737 L HOH 741 6 HOH HOH 741 L HOH 744 6 HOH HOH 744 L HOH 745 6 HOH HOH 745 L HOH 751 6 HOH HOH 751 L HOH 752 6 HOH HOH 752 L HOH 763 6 HOH HOH 763 L ILE 16 n 1 ILE 16 A VAL 17 n 2 VAL 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A GLN 20 n 5 GLN 20 A GLU 21 n 6 GLU 21 A CYS 22 n 7 CYS 22 A LYS 23 n 8 LYS 23 A ASP 24 n 9 ASP 24 A GLY 25 n 10 GLY 25 A GLU 26 n 11 GLU 26 A CYS 27 n 12 CYS 27 A PRO 28 n 13 PRO 28 A TRP 29 n 14 TRP 29 A GLN 30 n 15 GLN 30 A ALA 31 n 16 ALA 31 A LEU 32 n 17 LEU 32 A LEU 33 n 18 LEU 33 A ILE 34 n 19 ILE 34 A ASN 35 n 20 ASN 35 A GLU 36 n 21 GLU 36 A GLU 37 n 22 GLU 37 A ASN 38 n 23 ASN 38 A GLU 39 n 24 GLU 39 A GLY 40 n 25 GLY 40 A PHE 41 n 26 PHE 41 A CYS 42 n 27 CYS 42 A GLY 43 n 28 GLY 43 A GLY 44 n 29 GLY 44 A THR 45 n 30 THR 45 A ILE 46 n 31 ILE 46 A LEU 47 n 32 LEU 47 A SER 48 n 33 SER 48 A GLU 49 n 34 GLU 49 A PHE 50 n 35 PHE 50 A TYR 51 n 36 TYR 51 A ILE 52 n 37 ILE 52 A LEU 53 n 38 LEU 53 A THR 54 n 39 THR 54 A ALA 55 n 40 ALA 55 A ALA 56 n 41 ALA 56 A HIS 57 n 42 HIS 57 A CYS 58 n 43 CYS 58 A LEU 59 n 44 LEU 59 A TYR 60 n 45 TYR 60 A GLN 61 n 46 GLN 61 A ALA 61 n 47 A ALA 61 A LYS 62 n 48 LYS 62 A ARG 63 n 49 ARG 63 A PHE 64 n 50 PHE 64 A LYS 65 n 51 LYS 65 A VAL 66 n 52 VAL 66 A ARG 67 n 53 ARG 67 A VAL 68 n 54 VAL 68 A GLY 69 n 55 GLY 69 A ASP 70 n 56 ASP 70 A ARG 71 n 57 ARG 71 A ASN 72 n 58 ASN 72 A THR 73 n 59 THR 73 A GLU 74 n 60 GLU 74 A GLN 75 n 61 GLN 75 A GLU 76 n 62 GLU 76 A GLU 77 n 63 GLU 77 A GLY 78 n 64 GLY 78 A GLY 79 n 65 GLY 79 A GLU 80 n 66 GLU 80 A ALA 81 n 67 ALA 81 A VAL 82 n 68 VAL 82 A HIS 83 n 69 HIS 83 A GLU 84 n 70 GLU 84 A VAL 85 n 71 VAL 85 A GLU 86 n 72 GLU 86 A VAL 87 n 73 VAL 87 A VAL 88 n 74 VAL 88 A ILE 89 n 75 ILE 89 A LYS 90 n 76 LYS 90 A HIS 91 n 77 HIS 91 A ASN 92 n 78 ASN 92 A ARG 93 n 79 ARG 93 A PHE 94 n 80 PHE 94 A THR 95 n 81 THR 95 A LYS 96 n 82 LYS 96 A GLU 97 n 83 GLU 97 A THR 98 n 84 THR 98 A TYR 99 n 85 TYR 99 A ASP 100 n 86 ASP 100 A PHE 101 n 87 PHE 101 A ASP 102 n 88 ASP 102 A ILE 103 n 89 ILE 103 A ALA 104 n 90 ALA 104 A VAL 105 n 91 VAL 105 A LEU 106 n 92 LEU 106 A ARG 107 n 93 ARG 107 A LEU 108 n 94 LEU 108 A LYS 109 n 95 LYS 109 A THR 110 n 96 THR 110 A PRO 111 n 97 PRO 111 A ILE 112 n 98 ILE 112 A THR 113 n 99 THR 113 A PHE 114 n 100 PHE 114 A ARG 115 n 101 ARG 115 A MET 116 n 102 MET 116 A ASN 117 n 103 ASN 117 A VAL 118 n 104 VAL 118 A ALA 119 n 105 ALA 119 A PRO 120 n 106 PRO 120 A ALA 121 n 107 ALA 121 A CYS 122 n 108 CYS 122 A LEU 123 n 109 LEU 123 A PRO 124 n 110 PRO 124 A GLU 124 n 111 A GLU 124 A ARG 125 n 112 ARG 125 A ASP 126 n 113 ASP 126 A TRP 127 n 114 TRP 127 A ALA 128 n 115 ALA 128 A GLU 129 n 116 GLU 129 A SER 130 n 117 SER 130 A THR 131 n 118 THR 131 A LEU 131 n 119 A LEU 131 A MET 131 n 120 B MET 131 A THR 132 n 121 THR 132 A GLN 133 n 122 GLN 133 A LYS 134 n 123 LYS 134 A THR 135 n 124 THR 135 A GLY 136 n 125 GLY 136 A ILE 137 n 126 ILE 137 A VAL 138 n 127 VAL 138 A SER 139 n 128 SER 139 A GLY 140 n 129 GLY 140 A PHE 141 n 130 PHE 141 A GLY 142 n 131 GLY 142 A ARG 143 n 132 ARG 143 A THR 144 n 133 THR 144 A HIS 145 n 134 HIS 145 A GLU 146 n 135 GLU 146 A LYS 147 n 136 LYS 147 A GLY 149 n 137 GLY 149 A ARG 150 n 138 ARG 150 A GLN 151 n 139 GLN 151 A SER 152 n 140 SER 152 A THR 153 n 141 THR 153 A ARG 154 n 142 ARG 154 A LEU 155 n 143 LEU 155 A LYS 156 n 144 LYS 156 A MET 157 n 145 MET 157 A LEU 158 n 146 LEU 158 A GLU 159 n 147 GLU 159 A VAL 160 n 148 VAL 160 A PRO 161 n 149 PRO 161 A TYR 162 n 150 TYR 162 A VAL 163 n 151 VAL 163 A ASP 164 n 152 ASP 164 A ARG 165 n 153 ARG 165 A ASN 166 n 154 ASN 166 A SER 167 n 155 SER 167 A CYS 168 n 156 CYS 168 A LYS 169 n 157 LYS 169 A LEU 170 n 158 LEU 170 A SER 171 n 159 SER 171 A SER 172 n 160 SER 172 A SER 173 n 161 SER 173 A PHE 174 n 162 PHE 174 A ILE 175 n 163 ILE 175 A ILE 176 n 164 ILE 176 A THR 177 n 165 THR 177 A GLN 178 n 166 GLN 178 A ASN 179 n 167 ASN 179 A MET 180 n 168 MET 180 A PHE 181 n 169 PHE 181 A CYS 182 n 170 CYS 182 A ALA 183 n 171 ALA 183 A GLY 184 n 172 GLY 184 A TYR 185 n 173 TYR 185 A ASP 185 n 174 A ASP 185 A THR 185 n 175 B THR 185 A LYS 186 n 176 LYS 186 A GLN 187 n 177 GLN 187 A GLU 188 n 178 GLU 188 A ASP 189 n 179 ASP 189 A ALA 190 n 180 ALA 190 A CYS 191 n 181 CYS 191 A GLN 192 n 182 GLN 192 A GLY 193 n 183 GLY 193 A ASP 194 n 184 ASP 194 A SER 195 n 185 SER 195 A GLY 196 n 186 GLY 196 A GLY 197 n 187 GLY 197 A PRO 198 n 188 PRO 198 A HIS 199 n 189 HIS 199 A VAL 200 n 190 VAL 200 A THR 201 n 191 THR 201 A ARG 202 n 192 ARG 202 A PHE 203 n 193 PHE 203 A LYS 204 n 194 LYS 204 A ASP 205 n 195 ASP 205 A THR 206 n 196 THR 206 A TYR 207 n 197 TYR 207 A PHE 208 n 198 PHE 208 A VAL 209 n 199 VAL 209 A THR 210 n 200 THR 210 A GLY 211 n 201 GLY 211 A ILE 212 n 202 ILE 212 A VAL 213 n 203 VAL 213 A SER 214 n 204 SER 214 A TRP 215 n 205 TRP 215 A GLY 216 n 206 GLY 216 A GLU 217 n 207 GLU 217 A GLY 218 n 208 GLY 218 A CYS 220 n 209 CYS 220 A ALA 221 n 210 ALA 221 A ARG 222 n 211 ARG 222 A LYS 223 n 212 LYS 223 A GLY 223 n 213 A GLY 223 A LYS 224 n 214 LYS 224 A TYR 225 n 215 TYR 225 A GLY 226 n 216 GLY 226 A ILE 227 n 217 ILE 227 A TYR 228 n 218 TYR 228 A THR 229 n 219 THR 229 A LYS 230 n 220 LYS 230 A VAL 231 n 221 VAL 231 A THR 232 n 222 THR 232 A ALA 233 n 223 ALA 233 A PHE 234 n 224 PHE 234 A LEU 235 n 225 LEU 235 A LYS 236 n 226 LYS 236 A TRP 237 n 227 TRP 237 A ILE 238 n 228 ILE 238 A ASP 239 n 229 ASP 239 A ARG 240 n 230 ARG 240 A SER 241 n 231 SER 241 A MET 242 n 232 MET 242 A LYS 243 n 233 LYS 243 A LYS 87 n 1 LYS 87 L LEU 88 n 2 LEU 88 L CYS 89 n 3 CYS 89 L SER 90 n 4 SER 90 L LEU 91 n 5 LEU 91 L ASP 92 n 6 ASP 92 L ASN 93 n 7 ASN 93 L GLY 94 n 8 GLY 94 L ASP 95 n 9 ASP 95 L CYS 96 n 10 CYS 96 L ASP 97 n 11 ASP 97 L GLN 98 n 12 GLN 98 L PHE 99 n 13 PHE 99 L CYS 100 n 14 CYS 100 L HIS 101 n 15 HIS 101 L GLU 102 n 16 GLU 102 L GLU 103 n 17 GLU 103 L GLN 104 n 18 GLN 104 L ASN 105 n 19 ASN 105 L SER 106 n 20 SER 106 L VAL 107 n 21 VAL 107 L VAL 108 n 22 VAL 108 L CYS 109 n 23 CYS 109 L SER 110 n 24 SER 110 L CYS 111 n 25 CYS 111 L ALA 112 n 26 ALA 112 L ARG 113 n 27 ARG 113 L GLY 114 n 28 GLY 114 L TYR 115 n 29 TYR 115 L THR 116 n 30 THR 116 L LEU 117 n 31 LEU 117 L ALA 118 n 32 ALA 118 L ASP 119 n 33 ASP 119 L ASN 120 n 34 ASN 120 L GLY 121 n 35 GLY 121 L LYS 122 n 36 LYS 122 L ALA 123 n 37 ALA 123 L CYS 124 n 38 CYS 124 L ILE 125 n 39 ILE 125 L PRO 126 n 40 PRO 126 L THR 127 n 41 THR 127 L GLY 128 n 42 GLY 128 L PRO 129 n 43 PRO 129 L TYR 130 n 44 TYR 130 L PRO 131 n 45 PRO 131 L CYS 132 n 46 CYS 132 L GLY 133 n 47 GLY 133 L LYS 134 n 48 LYS 134 L GLN 135 n 49 GLN 135 L THR 136 n 50 THR 136 L LEU 137 n 51 LEU 137 L author_and_software_defined_assembly PISA 2 dimeric 3630 -43 12690 A ASP 70 A OD2 ASP 56 1_555 A CA 501 C CA CA 1_555 A ASN 72 A O ASN 58 1_555 83.7 A ASP 70 A OD2 ASP 56 1_555 A CA 501 C CA CA 1_555 A GLU 77 A OE2 GLU 63 1_555 78.7 A ASN 72 A O ASN 58 1_555 A CA 501 C CA CA 1_555 A GLU 77 A OE2 GLU 63 1_555 83.4 A ASP 70 A OD2 ASP 56 1_555 A CA 501 C CA CA 1_555 A HOH 710 H O HOH 1_555 77.0 A ASN 72 A O ASN 58 1_555 A CA 501 C CA CA 1_555 A HOH 710 H O HOH 1_555 96.1 A GLU 77 A OE2 GLU 63 1_555 A CA 501 C CA CA 1_555 A HOH 710 H O HOH 1_555 155.6 A ASP 70 A OD2 ASP 56 1_555 A CA 501 C CA CA 1_555 A GLN 75 A O GLN 61 1_555 168.9 A ASN 72 A O ASN 58 1_555 A CA 501 C CA CA 1_555 A GLN 75 A O GLN 61 1_555 105.4 A GLU 77 A OE2 GLU 63 1_555 A CA 501 C CA CA 1_555 A GLN 75 A O GLN 61 1_555 95.8 A HOH 710 H O HOH 1_555 A CA 501 C CA CA 1_555 A GLN 75 A O GLN 61 1_555 107.8 A ASP 70 A OD2 ASP 56 1_555 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 85.3 A ASN 72 A O ASN 58 1_555 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 168.2 A GLU 77 A OE2 GLU 63 1_555 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 90.2 A HOH 710 H O HOH 1_555 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 85.6 A GLN 75 A O GLN 61 1_555 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 85.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 20 A N GLN 5 A O MET 157 A O MET 145 A O VAL 160 A O VAL 148 A N GLY 136 A N GLY 125 A N ILE 137 A N ILE 126 A O VAL 200 A O VAL 190 A N PHE 203 A N PHE 193 A O THR 206 A O THR 196 A N TRP 215 A N TRP 205 A O ILE 227 A O ILE 217 A O TYR 228 A O TYR 218 A N PHE 181 A N PHE 169 A N LEU 33 A N LEU 18 A O PHE 41 A O PHE 26 A N THR 45 A N THR 30 A O LEU 53 A O LEU 38 A N THR 54 A N THR 39 A O ALA 104 A O ALA 90 A O VAL 105 A O VAL 91 A N ILE 89 A N ILE 75 A O HIS 83 A O HIS 69 A N VAL 66 A N VAL 52 A O ARG 67 A O ARG 53 A N LEU 32 A N LEU 17 L N HIS 101 B N HIS 15 L O VAL 108 B O VAL 22 L N THR 116 B N THR 30 L O ILE 125 B O ILE 39 1 A GLU 74 -115.08 65.36 1 A GLN 75 174.39 129.53 1 A ARG 115 -174.96 -177.31 1 A ALA 221 59.30 14.95 1 L LEU 88 48.93 -116.12 1 L ASN 93 48.46 23.40 1 L GLN 98 -119.81 -114.23 PARHCSDX.PRO,PARAM11.WAT TOPHCSDX.PRO 36.34 -2.94990 0.00000 0.00000 8.68510 0.00000 -5.73510 FINAL REFINEMENT HAD A B FACTOR OPTIMIZATION AND A FINAL POWELL MINIMIZATION. 0.268 0.186 0.19 2.10 8.00 643 19603 17183 4.000 99.1 RANDOM 1 Isotropic 2.0 0.0 DIRECT REPLACEMENT PDB ENTRY 1FJS Engh & Huber 2.10 8.00 164 2439 55 0 2220 0.011 2.01 1.59 1.500 2.000 2.000 2.500 0.3366 0.2932 2.19 55 1276 1276 8 4.10 0.2688 0.2802 2.31 60 1503 8 0.2872 0.262 2.45 73 1683 8 0.2919 0.2416 2.63 74 1759 8 0.3213 0.2235 2.88 72 1944 8 0.2466 0.1949 3.28 89 2081 8 0.2824 0.1512 4.04 109 2249 8 0.2374 0.1474 8.0 111 2383 8 56.09 2.100 25.00 1MQ6 19603 19603 0.0 -3.0 0.0673 1 8.5000 3.540 99.1 2.10 2.23 1.30 3162 0.3613 1 3.50 98.4 data collection Blu-Ice data reduction X-GEN model building X-PLOR refinement X-PLOR 3.1 data scaling X-GEN phasing X-PLOR COAGULATION FACTOR X (E.C.3.4.21.6) Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N Factor Xa forms a complex with factor Va in the presence of calcium and a phospholipid membrane to produce the prothrombinase complex. A ALA 55 A ALA 40 HELX_P A GLN 61 A GLN 46 5 1 7 A GLU 124 A GLU 111 HELX_P A THR 131 A THR 118 1 2 8 A A LEU 131 A LEU 119 HELX_P A GLN 133 A GLN 122 5 3 4 A A ASP 164 A ASP 152 HELX_P A SER 172 A SER 160 1 4 9 A PHE 234 A PHE 224 HELX_P A MET 242 A MET 232 1 5 9 L LYS 87 B LYS 1 HELX_P L CYS 96 B CYS 10 5 6 10 disulf 2.040 A CYS 22 A SG CYS 7 1_555 A CYS 27 A SG CYS 12 1_555 disulf 2.046 A CYS 42 A SG CYS 27 1_555 A CYS 58 A SG CYS 43 1_555 disulf 2.056 A CYS 122 A SG CYS 108 1_555 L CYS 132 B SG CYS 46 1_555 disulf 2.008 A CYS 168 A SG CYS 156 1_555 A CYS 182 A SG CYS 170 1_555 disulf 2.018 A CYS 191 A SG CYS 181 1_555 A CYS 220 A SG CYS 209 1_555 disulf 2.058 L CYS 89 B SG CYS 3 1_555 L CYS 100 B SG CYS 14 1_555 disulf 2.012 L CYS 96 B SG CYS 10 1_555 L CYS 109 B SG CYS 23 1_555 disulf 2.040 L CYS 111 B SG CYS 25 1_555 L CYS 124 B SG CYS 38 1_555 metalc 2.397 A CA 501 C CA CA 1_555 A ASP 70 A OD2 ASP 56 1_555 metalc 2.095 A CA 501 C CA CA 1_555 A ASN 72 A O ASN 58 1_555 metalc 2.103 A CA 501 C CA CA 1_555 A GLU 77 A OE2 GLU 63 1_555 metalc 1.810 A CA 501 C CA CA 1_555 A HOH 710 H O HOH 1_555 metalc 1.990 A CA 501 C CA CA 1_555 A GLN 75 A O GLN 61 1_555 metalc 2.088 A CA 501 C CA CA 1_555 A GLU 80 A OE2 GLU 66 1_555 BLOOD CLOTTING PROTEIN INHIBITOR COMPLEX, COAGULATION COFACTOR, PROTEASE, BLOOD CLOTTING FA10_HUMAN UNP 1 235 P00742 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK FA10_HUMAN UNP 2 127 P00742 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL 235 467 1MQ6 16 243 P00742 A 1 1 233 127 177 1MQ6 87 137 P00742 L 2 1 51 7 7 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 20 A GLN 5 A GLU 21 A GLU 6 A LYS 156 A LYS 144 A PRO 161 A PRO 149 A THR 135 A THR 124 A GLY 140 A GLY 129 A PRO 198 A PRO 188 A PHE 203 A PHE 193 A THR 206 A THR 196 A TRP 215 A TRP 205 A GLY 226 A GLY 216 A LYS 230 A LYS 220 A MET 180 A MET 168 A ALA 183 A ALA 171 A GLN 30 A GLN 15 A ASN 35 A ASN 20 A GLY 40 A GLY 25 A ILE 46 A ILE 31 A TYR 51 A TYR 36 A THR 54 A THR 39 A ALA 104 A ALA 90 A LEU 108 A LEU 94 A ALA 81 A ALA 67 A LYS 90 A LYS 76 A PHE 64 A PHE 50 A VAL 68 A VAL 54 A GLN 30 A GLN 15 A ASN 35 A ASN 20 L PHE 99 B PHE 13 L GLU 102 B GLU 16 L VAL 107 B VAL 21 L SER 110 B SER 24 L TYR 115 B TYR 29 L LEU 117 B LEU 31 L CYS 124 B CYS 38 L PRO 126 B PRO 40 BINDING SITE FOR RESIDUE CA A 501 Software 6 BINDING SITE FOR RESIDUE XLD A 500 Software 17 BINDING SITE FOR RESIDUE GOL A 502 Software 7 BINDING SITE FOR RESIDUE GOL A 503 Software 4 BINDING SITE FOR RESIDUE GOL A 504 Software 3 A ASP 70 A ASP 56 6 1_555 A ASN 72 A ASN 58 6 1_555 A GLN 75 A GLN 61 6 1_555 A GLU 77 A GLU 63 6 1_555 A GLU 80 A GLU 66 6 1_555 A HOH 710 H HOH 6 1_555 A LYS 96 A LYS 82 17 1_555 A GLU 97 A GLU 83 17 1_555 A TYR 99 A TYR 85 17 1_555 A GLU 146 A GLU 135 17 1_555 A PHE 174 A PHE 162 17 1_555 A ASP 189 A ASP 179 17 1_555 A ALA 190 A ALA 180 17 1_555 A GLN 192 A GLN 182 17 1_555 A VAL 213 A VAL 203 17 1_555 A TRP 215 A TRP 205 17 1_555 A GLY 216 A GLY 206 17 1_555 A GLU 217 A GLU 207 17 1_555 A GLY 218 A GLY 208 17 1_555 A CYS 220 A CYS 209 17 1_555 A GLY 226 A GLY 216 17 1_555 A TYR 228 A TYR 218 17 1_555 A HOH 736 H HOH 17 1_555 A LEU 47 A LEU 32 7 1_555 A SER 48 A SER 33 7 1_555 A GLU 49 A GLU 34 7 1_555 A PHE 114 A PHE 100 7 1_555 A PRO 120 A PRO 106 7 1_555 A HOH 702 H HOH 7 1_555 L TYR 130 B TYR 44 7 1_555 A LEU 123 A LEU 109 4 1_555 A PRO 124 A PRO 110 4 1_555 A LEU 235 A LEU 225 4 1_555 A HOH 672 H HOH 4 1_555 A GLU 84 A GLU 70 3 3_645 A SER 130 A SER 117 3 1_555 L CYS 100 B CYS 14 3 1_555 19 P 21 21 21