0.010119
0.000000
0.000000
0.000000
0.010119
0.000000
0.000000
0.000000
0.010119
0.00000
0.00000
0.00000
Sawaya, M.R.
Chan, S.
Segelke, B.W.
Lekin, T.
Heike, K.
Cho, U.S.
Naranjo, C.
Perry, L.J.
Yeates, T.O.
Eisenberg, D.
TB Structural Genomics Consortium (TBSGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
98.823
98.823
98.823
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
N
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
341
503
517
10.1016/j.jmb.2004.06.028
15276840
Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism.
2004
UK
STRUCTURE
STRUE6
2005
0969-2126
4
1077
1092
10.1016/S0969-2126(96)00114-1
HUMAN DUTP PYROPHOSPHATASE: URACIL RECOGNITION BY A BETA HAIRPIN AND ACTIVE SITES FORMED BY THREE SEPARATE SUBUNITS
1996
10.2210/pdb1mq7/pdb
pdb_00001mq7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-06-23
ADSC QUANTUM 4
Si (220)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.1
15820.938
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
3.6.1.23
1
man
polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
syn
non-polymer
18.015
water
135
nat
water
dUTPase, dUTP pyrophosphatase
no
no
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPG
TIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPG
TIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
A
Rv2697c
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
sample
Rv2697c
1773
Mycobacterium tuberculosis
562
Escherichia coli
1
2.54
51.58
VAPOR DIFFUSION, HANGING DROP
8.5
PEG4000, EDTA, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
TB Structural Genomics Consortium
TBSGC
PSI, Protein Structure Initiative
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-10-09
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2002-09-13
REL
REL
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
1DUD
PDB ENTRY 1DUD
PDB
experimental model
TRS
150
2
TRS
TRS
155
A
TRS
151
2
TRS
TRS
156
A
HOH
1
3
HOH
HOH
157
A
HOH
2
3
HOH
HOH
158
A
HOH
3
3
HOH
HOH
159
A
HOH
4
3
HOH
HOH
160
A
HOH
5
3
HOH
HOH
161
A
HOH
6
3
HOH
HOH
162
A
HOH
7
3
HOH
HOH
163
A
HOH
8
3
HOH
HOH
164
A
HOH
9
3
HOH
HOH
165
A
HOH
10
3
HOH
HOH
166
A
HOH
11
3
HOH
HOH
167
A
HOH
12
3
HOH
HOH
168
A
HOH
13
3
HOH
HOH
169
A
HOH
14
3
HOH
HOH
170
A
HOH
15
3
HOH
HOH
171
A
HOH
16
3
HOH
HOH
172
A
HOH
17
3
HOH
HOH
173
A
HOH
18
3
HOH
HOH
174
A
HOH
19
3
HOH
HOH
175
A
HOH
20
3
HOH
HOH
176
A
HOH
21
3
HOH
HOH
177
A
HOH
22
3
HOH
HOH
178
A
HOH
23
3
HOH
HOH
179
A
HOH
24
3
HOH
HOH
180
A
HOH
25
3
HOH
HOH
181
A
HOH
26
3
HOH
HOH
182
A
HOH
27
3
HOH
HOH
183
A
HOH
28
3
HOH
HOH
184
A
HOH
29
3
HOH
HOH
185
A
HOH
30
3
HOH
HOH
186
A
HOH
31
3
HOH
HOH
187
A
HOH
32
3
HOH
HOH
188
A
HOH
33
3
HOH
HOH
189
A
HOH
34
3
HOH
HOH
190
A
HOH
35
3
HOH
HOH
191
A
HOH
36
3
HOH
HOH
192
A
HOH
37
3
HOH
HOH
193
A
HOH
38
3
HOH
HOH
194
A
HOH
39
3
HOH
HOH
195
A
HOH
40
3
HOH
HOH
196
A
HOH
41
3
HOH
HOH
197
A
HOH
42
3
HOH
HOH
198
A
HOH
43
3
HOH
HOH
199
A
HOH
44
3
HOH
HOH
200
A
HOH
45
3
HOH
HOH
201
A
HOH
46
3
HOH
HOH
202
A
HOH
48
3
HOH
HOH
203
A
HOH
49
3
HOH
HOH
204
A
HOH
50
3
HOH
HOH
205
A
HOH
51
3
HOH
HOH
206
A
HOH
52
3
HOH
HOH
207
A
HOH
53
3
HOH
HOH
208
A
HOH
54
3
HOH
HOH
209
A
HOH
55
3
HOH
HOH
210
A
HOH
56
3
HOH
HOH
211
A
HOH
57
3
HOH
HOH
212
A
HOH
58
3
HOH
HOH
213
A
HOH
59
3
HOH
HOH
214
A
HOH
60
3
HOH
HOH
215
A
HOH
61
3
HOH
HOH
216
A
HOH
63
3
HOH
HOH
217
A
HOH
64
3
HOH
HOH
218
A
HOH
65
3
HOH
HOH
219
A
HOH
66
3
HOH
HOH
220
A
HOH
67
3
HOH
HOH
221
A
HOH
68
3
HOH
HOH
222
A
HOH
69
3
HOH
HOH
223
A
HOH
70
3
HOH
HOH
224
A
HOH
71
3
HOH
HOH
225
A
HOH
72
3
HOH
HOH
226
A
HOH
73
3
HOH
HOH
227
A
HOH
74
3
HOH
HOH
228
A
HOH
75
3
HOH
HOH
229
A
HOH
76
3
HOH
HOH
230
A
HOH
78
3
HOH
HOH
231
A
HOH
79
3
HOH
HOH
232
A
HOH
80
3
HOH
HOH
233
A
HOH
81
3
HOH
HOH
234
A
HOH
82
3
HOH
HOH
235
A
HOH
83
3
HOH
HOH
236
A
HOH
84
3
HOH
HOH
237
A
HOH
85
3
HOH
HOH
238
A
HOH
86
3
HOH
HOH
239
A
HOH
87
3
HOH
HOH
240
A
HOH
88
3
HOH
HOH
241
A
HOH
89
3
HOH
HOH
242
A
HOH
90
3
HOH
HOH
243
A
HOH
91
3
HOH
HOH
244
A
HOH
92
3
HOH
HOH
245
A
HOH
93
3
HOH
HOH
246
A
HOH
94
3
HOH
HOH
247
A
HOH
95
3
HOH
HOH
248
A
HOH
96
3
HOH
HOH
249
A
HOH
97
3
HOH
HOH
250
A
HOH
98
3
HOH
HOH
251
A
HOH
99
3
HOH
HOH
252
A
HOH
100
3
HOH
HOH
253
A
HOH
101
3
HOH
HOH
254
A
HOH
102
3
HOH
HOH
255
A
HOH
103
3
HOH
HOH
256
A
HOH
104
3
HOH
HOH
257
A
HOH
105
3
HOH
HOH
258
A
HOH
107
3
HOH
HOH
259
A
HOH
108
3
HOH
HOH
260
A
HOH
109
3
HOH
HOH
261
A
HOH
111
3
HOH
HOH
262
A
HOH
112
3
HOH
HOH
263
A
HOH
113
3
HOH
HOH
264
A
HOH
114
3
HOH
HOH
265
A
HOH
115
3
HOH
HOH
266
A
HOH
116
3
HOH
HOH
267
A
HOH
118
3
HOH
HOH
268
A
HOH
119
3
HOH
HOH
269
A
HOH
120
3
HOH
HOH
270
A
HOH
121
3
HOH
HOH
271
A
HOH
122
3
HOH
HOH
272
A
HOH
123
3
HOH
HOH
273
A
HOH
124
3
HOH
HOH
274
A
HOH
125
3
HOH
HOH
275
A
HOH
126
3
HOH
HOH
276
A
HOH
127
3
HOH
HOH
277
A
HOH
128
3
HOH
HOH
278
A
HOH
129
3
HOH
HOH
279
A
HOH
130
3
HOH
HOH
280
A
HOH
132
3
HOH
HOH
281
A
HOH
133
3
HOH
HOH
282
A
HOH
134
3
HOH
HOH
283
A
HOH
135
3
HOH
HOH
284
A
HOH
137
3
HOH
HOH
285
A
HOH
138
3
HOH
HOH
286
A
HOH
140
3
HOH
HOH
287
A
HOH
141
3
HOH
HOH
288
A
HOH
142
3
HOH
HOH
289
A
HOH
143
3
HOH
HOH
290
A
HOH
144
3
HOH
HOH
291
A
n
1
1
A
SER
4
n
2
SER
2
A
THR
5
n
3
THR
3
A
THR
6
n
4
THR
4
A
LEU
7
n
5
LEU
5
A
ALA
8
n
6
ALA
6
A
ILE
9
n
7
ILE
7
A
VAL
10
n
8
VAL
8
A
ARG
11
n
9
ARG
9
A
LEU
12
n
10
LEU
10
A
ASP
13
n
11
ASP
11
A
PRO
14
n
12
PRO
12
A
GLY
15
n
13
GLY
13
A
LEU
16
n
14
LEU
14
A
PRO
17
n
15
PRO
15
A
LEU
18
n
16
LEU
16
A
PRO
19
n
17
PRO
17
A
SER
20
n
18
SER
18
A
ARG
21
n
19
ARG
19
A
ALA
22
n
20
ALA
20
A
HIS
23
n
21
HIS
21
A
ASP
24
n
22
ASP
22
A
GLY
25
n
23
GLY
23
A
ASP
26
n
24
ASP
24
A
ALA
27
n
25
ALA
25
A
GLY
28
n
26
GLY
26
A
VAL
29
n
27
VAL
27
A
ASP
30
n
28
ASP
28
A
LEU
31
n
29
LEU
29
A
TYR
32
n
30
TYR
30
A
SER
33
n
31
SER
31
A
ALA
34
n
32
ALA
32
A
GLU
35
n
33
GLU
33
A
ASP
36
n
34
ASP
34
A
VAL
37
n
35
VAL
35
A
GLU
38
n
36
GLU
36
A
LEU
39
n
37
LEU
37
A
ALA
40
n
38
ALA
38
A
PRO
41
n
39
PRO
39
A
GLY
42
n
40
GLY
40
A
ARG
43
n
41
ARG
41
A
ARG
44
n
42
ARG
42
A
ALA
45
n
43
ALA
43
A
LEU
46
n
44
LEU
44
A
VAL
47
n
45
VAL
45
A
ARG
48
n
46
ARG
46
A
THR
49
n
47
THR
47
A
GLY
50
n
48
GLY
48
A
VAL
51
n
49
VAL
49
A
ALA
52
n
50
ALA
50
A
VAL
53
n
51
VAL
51
A
ALA
54
n
52
ALA
52
A
VAL
55
n
53
VAL
53
A
PRO
56
n
54
PRO
54
A
PHE
57
n
55
PHE
55
A
GLY
58
n
56
GLY
56
A
MET
59
n
57
MET
57
A
VAL
60
n
58
VAL
58
A
GLY
61
n
59
GLY
59
A
LEU
62
n
60
LEU
60
A
VAL
63
n
61
VAL
61
A
HIS
64
n
62
HIS
62
A
PRO
65
n
63
PRO
63
A
ARG
66
n
64
ARG
64
A
SER
67
n
65
SER
65
A
GLY
68
n
66
GLY
66
A
LEU
69
n
67
LEU
67
A
ALA
70
n
68
ALA
68
A
THR
71
n
69
THR
69
A
ARG
72
n
70
ARG
70
A
VAL
73
n
71
VAL
71
A
GLY
74
n
72
GLY
72
A
LEU
75
n
73
LEU
73
A
SER
76
n
74
SER
74
A
ILE
77
n
75
ILE
75
A
VAL
78
n
76
VAL
76
A
ASN
79
n
77
ASN
77
A
SER
80
n
78
SER
78
A
PRO
81
n
79
PRO
79
A
GLY
82
n
80
GLY
80
A
THR
83
n
81
THR
81
A
ILE
84
n
82
ILE
82
A
ASP
85
n
83
ASP
83
A
ALA
86
n
84
ALA
84
A
GLY
87
n
85
GLY
85
A
TYR
88
n
86
TYR
86
A
ARG
89
n
87
ARG
87
A
GLY
90
n
88
GLY
88
A
GLU
91
n
89
GLU
89
A
ILE
92
n
90
ILE
90
A
LYS
93
n
91
LYS
91
A
VAL
94
n
92
VAL
92
A
ALA
95
n
93
ALA
93
A
LEU
96
n
94
LEU
94
A
ILE
97
n
95
ILE
95
A
ASN
98
n
96
ASN
96
A
LEU
99
n
97
LEU
97
A
ASP
100
n
98
ASP
98
A
PRO
101
n
99
PRO
99
A
ALA
102
n
100
ALA
100
A
ALA
103
n
101
ALA
101
A
PRO
104
n
102
PRO
102
A
ILE
105
n
103
ILE
103
A
VAL
106
n
104
VAL
104
A
VAL
107
n
105
VAL
105
A
HIS
108
n
106
HIS
106
A
ARG
109
n
107
ARG
107
A
GLY
110
n
108
GLY
108
A
ASP
111
n
109
ASP
109
A
ARG
112
n
110
ARG
110
A
ILE
113
n
111
ILE
111
A
ALA
114
n
112
ALA
112
A
GLN
115
n
113
GLN
113
A
LEU
116
n
114
LEU
114
A
LEU
117
n
115
LEU
115
A
VAL
118
n
116
VAL
116
A
GLN
119
n
117
GLN
117
A
ARG
120
n
118
ARG
118
A
VAL
121
n
119
VAL
119
A
GLU
122
n
120
GLU
120
A
LEU
123
n
121
LEU
121
A
VAL
124
n
122
VAL
122
A
GLU
125
n
123
GLU
123
A
LEU
126
n
124
LEU
124
A
VAL
127
n
125
VAL
125
A
GLU
128
n
126
GLU
126
A
VAL
129
n
127
VAL
127
A
SER
130
n
128
SER
128
A
SER
131
n
129
SER
129
A
PHE
132
n
130
PHE
130
A
ASP
133
n
131
ASP
131
A
GLU
134
n
132
GLU
132
A
ALA
135
n
133
ALA
133
A
GLY
136
n
134
GLY
134
A
LEU
137
n
135
LEU
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
10280
-33
16280
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_555
z,x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_555
y,z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
8
A
N
VAL
8
A
O
ALA
50
A
O
ALA
50
A
N
VAL
45
A
N
VAL
45
A
O
VAL
92
A
O
VAL
92
A
O
ILE
95
A
O
ILE
95
A
N
SER
74
A
N
SER
74
A
N
VAL
27
A
N
VAL
27
A
O
LEU
114
A
O
LEU
114
A
O
LEU
115
A
O
LEU
115
A
N
LEU
60
A
N
LEU
60
A
N
GLY
59
A
N
GLY
59
A
O
ILE
82
A
O
ILE
82
A
N
VAL
35
A
N
VAL
35
A
O
VAL
105
A
O
VAL
105
1
A
TRS
155
B
TRS
1
A
TRS
155
B
TRS
1
A
TRS
156
C
TRS
1
A
TRS
156
C
TRS
1
A
HOH
200
D
HOH
1
A
HOH
251
D
HOH
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
136
A
ALA
136
1
Y
1
A
SER
137
A
SER
137
1
Y
1
A
THR
138
A
THR
138
1
Y
1
A
SER
139
A
SER
139
1
Y
1
A
ARG
140
A
ARG
140
1
Y
1
A
GLY
141
A
GLY
141
1
Y
1
A
ASP
142
A
ASP
142
1
Y
1
A
GLY
143
A
GLY
143
1
Y
1
A
GLY
144
A
GLY
144
1
Y
1
A
HIS
145
A
HIS
145
1
Y
1
A
GLY
146
A
GLY
146
1
Y
1
A
SER
147
A
SER
147
1
Y
1
A
SER
148
A
SER
148
1
Y
1
A
GLY
149
A
GLY
149
1
Y
1
A
GLY
150
A
GLY
150
1
Y
1
A
HIS
151
A
HIS
151
1
Y
1
A
ALA
152
A
ALA
152
1
Y
1
A
SER
153
A
SER
153
1
Y
1
A
LEU
154
A
LEU
154
1
Y
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER.PARAM
WATER.TOP
TRS.PARAM
TRS.TOP
31.8
0.00
0.00
0.00
0.00
0.00
0.00
0.226
0.007
0.197
0.1999
0.197
1.95
31.25
1170
11317
11317
10.3
95.3
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1DUD
Engh & Huber
FLAT MODEL
48.1896
0.366749
0.26
0.14
1.95
31.25
135
1128
8
0
985
0.008
1.4
26.4
0.83
0.258
0.018
0.231
2.07
202
1646
6
10.9
95.3
17.3
1.95
31.25
1MQ7
11317
11317
0
0
0.078
1
62.7
18.0
97.1
1.95
2.02
1172
0.393
1
100
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
CNS
1.1
CRYSTAL STRUCTURE OF DUTPASE FROM MYCOBACTERIUM TUBERCULOSIS (RV2697C)
1
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is a trimer that is generated by the following crystallographic symmetry operators
-y+1, -z+1, x and
z, -x+1, -y+1
A
GLY
66
A
GLY
66
HELX_P
A
VAL
71
A
VAL
71
1
1
6
covale
1.652
none
A
TRS
155
B
C
TRS
1_555
A
TRS
155
B
C1
TRS
1_555
covale
1.650
none
A
TRS
156
C
C
TRS
1_555
A
TRS
156
C
C1
TRS
1_555
HYDROLASE
jelly-roll, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, HYDROLASE
A
SER
78
A
SER
78
1
A
PRO
79
A
PRO
79
0.19
DUT_MYCTU
UNP
1
1
P0A552
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPG
TIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
1
154
1MQ7
1
154
P0A552
A
1
1
154
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
6
A
ALA
6
A
ARG
9
A
ARG
9
A
ARG
42
A
ARG
42
A
ALA
52
A
ALA
52
A
GLU
89
A
GLU
89
A
ASN
96
A
ASN
96
A
LEU
73
A
LEU
73
A
ILE
75
A
ILE
75
A
GLY
26
A
GLY
26
A
TYR
30
A
TYR
30
A
ARG
110
A
ARG
110
A
ARG
118
A
ARG
118
A
MET
57
A
MET
57
A
HIS
62
A
HIS
62
A
GLY
80
A
GLY
80
A
ILE
82
A
ILE
82
A
VAL
35
A
VAL
35
A
LEU
37
A
LEU
37
A
ILE
103
A
ILE
103
A
VAL
105
A
VAL
105
BINDING SITE FOR RESIDUE TRS A 155
A
TRS
155
Software
7
BINDING SITE FOR RESIDUE TRS A 156
A
TRS
156
Software
5
A
SER
74
A
SER
74
7
1_555
A
SER
74
A
SER
74
7
5_555
A
ILE
75
A
ILE
75
7
1_555
A
VAL
76
A
VAL
76
7
1_555
A
HOH
204
D
HOH
7
1_555
A
HOH
204
D
HOH
7
9_555
A
HOH
204
D
HOH
7
5_555
A
LEU
60
A
LEU
60
5
1_555
A
HIS
62
A
HIS
62
5
1_555
A
GLN
117
A
GLN
117
5
9_555
A
GLN
117
A
GLN
117
5
1_555
A
GLN
117
A
GLN
117
5
5_555
197
I 2 3