0.015612
0.009014
0.000000
0.000000
0.018028
0.000000
0.000000
0.000000
0.005488
0.00000
0.00000
0.00000
Kang, L.-W.
Gabelli, S.B.
Bianchet, M.A.
Cunningham, J.E.
O'Handley, S.F.
Amzel, L.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
64.052
64.052
182.212
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C15 H23 N5 O14 P2
559.316
ADENOSINE-5-DIPHOSPHORIBOSE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Gd 3
157.250
GADOLINIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
Y
19
N
C
N
20
N
N
Y
21
N
N
Y
22
N
C
Y
23
N
N
N
24
R
C
N
25
R
C
N
26
N
O
N
27
S
C
N
28
N
O
N
29
N
O
N
30
R
C
N
31
N
C
N
32
N
O
N
33
S
P
N
34
N
O
N
35
N
O
N
36
N
O
N
37
R
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
N
O
N
43
N
O
N
44
R
C
N
45
N
O
N
46
R
C
N
47
N
O
N
48
S
C
N
49
R
C
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
N
N
81
N
C
N
82
N
N
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
GD
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
N
Y
190
N
C
Y
191
N
C
Y
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
S
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
Y
15
N
doub
N
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
doub
Y
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
Y
189
N
sing
Y
190
N
doub
Y
191
N
doub
N
192
N
sing
Y
193
N
sing
N
194
N
sing
Y
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
Y
275
N
sing
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
1015
1023
10.1016/S0969-2126(03)00154-0
12906832
Structure and mechanism of MT-ADPRase, a Nudix hydrolase from Mycobacterium tuberculosis
2003
10.2210/pdb1mqe/pdb
pdb_00001mqe
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
mirrors
IMAGE PLATE
2001-11-20
RIGAKU RAXIS IV
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
22920.846
ADPR pyrophosphatase
3.6.1.13
1
man
polymer
559.316
ADENOSINE-5-DIPHOSPHORIBOSE
1
syn
non-polymer
157.250
GADOLINIUM ION
1
syn
non-polymer
18.015
water
86
nat
water
ADPRase, MutT/nudix family protein, Hypothetical protein Rv1700
no
no
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
sample
1773
Mycobacterium tuberculosis
562
Escherichia coli
blr(de3)
plasmid
pET11b
1
2.35
47.72
VAPOR DIFFUSION, HANGING DROP
7.5
Sodium formate, Tris HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-08-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein complexed with ADPR
The same protein (apo enzyme)
The same protein complexed with three Mn2+ ions and AMP-CP
The same protein complexed with 1 Mn2+ ion and AMP-CP
RCSB
Y
RCSB
2002-09-16
REL
APR
ADENOSINE-5-DIPHOSPHORIBOSE
GD3
GADOLINIUM ION
HOH
water
APR
201
2
APR
APR
208
A
GD3
301
3
GD3
GD3
301
A
HOH
2
4
HOH
HOH
302
A
HOH
3
4
HOH
HOH
303
A
HOH
5
4
HOH
HOH
304
A
HOH
6
4
HOH
HOH
305
A
HOH
7
4
HOH
HOH
306
A
HOH
8
4
HOH
HOH
307
A
HOH
9
4
HOH
HOH
308
A
HOH
10
4
HOH
HOH
309
A
HOH
11
4
HOH
HOH
310
A
HOH
12
4
HOH
HOH
311
A
HOH
13
4
HOH
HOH
312
A
HOH
15
4
HOH
HOH
313
A
HOH
16
4
HOH
HOH
314
A
HOH
17
4
HOH
HOH
315
A
HOH
18
4
HOH
HOH
316
A
HOH
19
4
HOH
HOH
317
A
HOH
20
4
HOH
HOH
318
A
HOH
21
4
HOH
HOH
319
A
HOH
22
4
HOH
HOH
320
A
HOH
23
4
HOH
HOH
321
A
HOH
24
4
HOH
HOH
322
A
HOH
25
4
HOH
HOH
323
A
HOH
26
4
HOH
HOH
324
A
HOH
27
4
HOH
HOH
325
A
HOH
29
4
HOH
HOH
326
A
HOH
30
4
HOH
HOH
327
A
HOH
31
4
HOH
HOH
328
A
HOH
32
4
HOH
HOH
329
A
HOH
35
4
HOH
HOH
330
A
HOH
36
4
HOH
HOH
331
A
HOH
38
4
HOH
HOH
332
A
HOH
39
4
HOH
HOH
333
A
HOH
41
4
HOH
HOH
334
A
HOH
43
4
HOH
HOH
335
A
HOH
44
4
HOH
HOH
336
A
HOH
46
4
HOH
HOH
337
A
HOH
47
4
HOH
HOH
338
A
HOH
48
4
HOH
HOH
339
A
HOH
50
4
HOH
HOH
340
A
HOH
51
4
HOH
HOH
341
A
HOH
53
4
HOH
HOH
342
A
HOH
55
4
HOH
HOH
343
A
HOH
57
4
HOH
HOH
344
A
HOH
58
4
HOH
HOH
345
A
HOH
63
4
HOH
HOH
346
A
HOH
64
4
HOH
HOH
347
A
HOH
65
4
HOH
HOH
348
A
HOH
66
4
HOH
HOH
349
A
HOH
67
4
HOH
HOH
350
A
HOH
68
4
HOH
HOH
351
A
HOH
71
4
HOH
HOH
352
A
HOH
75
4
HOH
HOH
353
A
HOH
77
4
HOH
HOH
354
A
HOH
79
4
HOH
HOH
355
A
HOH
80
4
HOH
HOH
356
A
HOH
82
4
HOH
HOH
357
A
HOH
83
4
HOH
HOH
358
A
HOH
88
4
HOH
HOH
359
A
HOH
89
4
HOH
HOH
360
A
HOH
90
4
HOH
HOH
361
A
HOH
93
4
HOH
HOH
362
A
HOH
94
4
HOH
HOH
363
A
HOH
97
4
HOH
HOH
364
A
HOH
102
4
HOH
HOH
365
A
HOH
103
4
HOH
HOH
366
A
HOH
107
4
HOH
HOH
367
A
HOH
112
4
HOH
HOH
368
A
HOH
114
4
HOH
HOH
369
A
HOH
115
4
HOH
HOH
370
A
HOH
118
4
HOH
HOH
371
A
HOH
123
4
HOH
HOH
372
A
HOH
124
4
HOH
HOH
373
A
HOH
127
4
HOH
HOH
374
A
HOH
130
4
HOH
HOH
375
A
HOH
131
4
HOH
HOH
376
A
HOH
132
4
HOH
HOH
377
A
HOH
135
4
HOH
HOH
378
A
HOH
137
4
HOH
HOH
379
A
HOH
138
4
HOH
HOH
380
A
HOH
139
4
HOH
HOH
381
A
HOH
141
4
HOH
HOH
382
A
HOH
142
4
HOH
HOH
383
A
HOH
143
4
HOH
HOH
384
A
HOH
144
4
HOH
HOH
385
A
HOH
145
4
HOH
HOH
386
A
HOH
146
4
HOH
HOH
387
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
PHE
6
n
6
PHE
6
A
GLU
7
n
7
GLU
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
SER
10
n
10
SER
10
A
SER
11
n
11
SER
11
A
GLU
12
n
12
GLU
12
A
THR
13
n
13
THR
13
A
LEU
14
n
14
LEU
14
A
HIS
15
n
15
HIS
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
PHE
20
n
20
PHE
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
ARG
24
n
24
ARG
24
A
ASP
25
n
25
ASP
25
A
GLN
26
n
26
GLN
26
A
VAL
27
n
27
VAL
27
A
ARG
28
n
28
ARG
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
ILE
34
n
34
ILE
34
A
VAL
35
n
35
VAL
35
A
THR
36
n
36
THR
36
A
ARG
37
n
37
ARG
37
A
GLU
38
n
38
GLU
38
A
VAL
39
n
39
VAL
39
A
VAL
40
n
40
VAL
40
A
GLU
41
n
41
GLU
41
A
HIS
42
n
42
HIS
42
A
PHE
43
n
43
PHE
43
A
GLY
44
n
44
GLY
44
A
ALA
45
n
45
ALA
45
A
VAL
46
n
46
VAL
46
A
ALA
47
n
47
ALA
47
A
ILE
48
n
48
ILE
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
MET
51
n
51
MET
51
A
ASP
52
n
52
ASP
52
A
ASP
53
n
53
ASP
53
A
ASN
54
n
54
ASN
54
A
GLY
55
n
55
GLY
55
A
ASN
56
n
56
ASN
56
A
ILE
57
n
57
ILE
57
A
PRO
58
n
58
PRO
58
A
MET
59
n
59
MET
59
A
VAL
60
n
60
VAL
60
A
TYR
61
n
61
TYR
61
A
GLN
62
n
62
GLN
62
A
TYR
63
n
63
TYR
63
A
ARG
64
n
64
ARG
64
A
HIS
65
n
65
HIS
65
A
THR
66
n
66
THR
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
ARG
70
n
70
ARG
70
A
LEU
71
n
71
LEU
71
A
TRP
72
n
72
TRP
72
A
GLU
73
n
73
GLU
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
ASP
80
n
80
ASP
80
A
VAL
81
n
81
VAL
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
GLU
84
n
84
GLU
84
A
PRO
85
n
85
PRO
85
A
PRO
86
n
86
PRO
86
A
HIS
87
n
87
HIS
87
A
LEU
88
n
88
LEU
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
ARG
92
n
92
ARG
92
A
GLU
93
n
93
GLU
93
A
LEU
94
n
94
LEU
94
A
ARG
95
n
95
ARG
95
A
GLU
96
n
96
GLU
96
A
GLU
97
n
97
GLU
97
A
VAL
98
n
98
VAL
98
A
GLY
99
n
99
GLY
99
A
LEU
100
n
100
LEU
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
THR
104
n
104
THR
104
A
TRP
105
n
105
TRP
105
A
GLN
106
n
106
GLN
106
A
VAL
107
n
107
VAL
107
A
LEU
108
n
108
LEU
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
ASP
112
n
112
ASP
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
PRO
115
n
115
PRO
115
A
GLY
116
n
116
GLY
116
A
PHE
117
n
117
PHE
117
A
SER
118
n
118
SER
118
A
ASP
119
n
119
ASP
119
A
GLU
120
n
120
GLU
120
A
SER
121
n
121
SER
121
A
VAL
122
n
122
VAL
122
A
ARG
123
n
123
ARG
123
A
VAL
124
n
124
VAL
124
A
TYR
125
n
125
TYR
125
A
LEU
126
n
126
LEU
126
A
ALA
127
n
127
ALA
127
A
THR
128
n
128
THR
128
A
GLY
129
n
129
GLY
129
A
LEU
130
n
130
LEU
130
A
ARG
131
n
131
ARG
131
A
GLU
132
n
132
GLU
132
A
VAL
133
n
133
VAL
133
A
GLY
134
n
134
GLY
134
A
ARG
135
n
135
ARG
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
THR
146
n
146
THR
146
A
MET
147
n
147
MET
147
A
GLY
148
n
148
GLY
148
A
TRP
149
n
149
TRP
149
A
TYR
150
n
150
TYR
150
A
PRO
151
n
151
PRO
151
A
ILE
152
n
152
ILE
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
ARG
157
n
157
ARG
157
A
ARG
158
n
158
ARG
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
ARG
161
n
161
ARG
161
A
GLY
162
n
162
GLY
162
A
GLU
163
n
163
GLU
163
A
ILE
164
n
164
ILE
164
A
VAL
165
n
165
VAL
165
A
ASN
166
n
166
ASN
166
A
SER
167
n
167
SER
167
A
ILE
168
n
168
ILE
168
A
ALA
169
n
169
ALA
169
A
ILE
170
n
170
ILE
170
A
ALA
171
n
171
ALA
171
A
GLY
172
n
172
GLY
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ALA
175
n
175
ALA
175
A
VAL
176
n
176
VAL
176
A
HIS
177
n
177
HIS
177
A
ALA
178
n
178
ALA
178
A
VAL
179
n
179
VAL
179
A
THR
180
n
180
THR
180
A
THR
181
n
181
THR
181
A
GLY
182
n
182
GLY
182
A
PHE
183
n
183
PHE
183
A
ALA
184
n
184
ALA
184
A
GLN
185
n
185
GLN
185
A
PRO
186
n
186
PRO
186
A
ARG
187
n
187
ARG
187
A
PRO
188
n
188
PRO
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
THR
191
n
191
THR
191
A
GLU
192
n
192
GLU
192
A
TRP
193
n
193
TRP
193
A
ILE
194
n
194
ILE
194
A
ASP
195
n
195
ASP
195
A
ARG
196
n
196
ARG
196
A
PRO
197
n
197
PRO
197
A
THR
198
n
198
THR
198
A
ALA
199
n
199
ALA
199
A
PHE
200
n
200
PHE
200
A
ALA
201
n
201
ALA
201
A
ALA
202
n
202
ALA
202
A
ARG
203
n
203
ARG
203
A
ARG
204
n
204
ARG
204
A
ALA
205
n
205
ALA
205
A
GLU
206
n
206
GLU
206
A
ARG
207
n
207
ARG
207
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
7720
-68
15860
A
GLU
93
A
OE2
GLU
93
1_555
A
GD3
301
C
GD
GD3
1_555
A
APR
208
B
O1A
APR
1_555
115.0
A
GLU
93
A
OE2
GLU
93
1_555
A
GD3
301
C
GD
GD3
1_555
A
HOH
302
D
O
HOH
1_555
83.6
A
APR
208
B
O1A
APR
1_555
A
GD3
301
C
GD
GD3
1_555
A
HOH
302
D
O
HOH
1_555
50.7
A
GLU
93
A
OE2
GLU
93
1_555
A
GD3
301
C
GD
GD3
1_555
A
HOH
303
D
O
HOH
1_555
59.1
A
APR
208
B
O1A
APR
1_555
A
GD3
301
C
GD
GD3
1_555
A
HOH
303
D
O
HOH
1_555
87.4
A
HOH
302
D
O
HOH
1_555
A
GD3
301
C
GD
GD3
1_555
A
HOH
303
D
O
HOH
1_555
104.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
30.3686666667
A
N
HIS
15
A
N
HIS
15
A
O
LEU
22
A
O
LEU
22
A
N
ARG
23
A
N
ARG
23
A
O
VAL
39
A
O
VAL
39
A
O
GLY
77
A
O
GLY
77
A
N
VAL
46
A
N
VAL
46
A
N
VAL
49
A
N
VAL
49
A
O
TYR
125
A
O
TYR
125
A
O
VAL
122
A
O
VAL
122
A
N
LEU
111
A
N
LEU
111
A
O
GLU
73
A
O
GLU
73
A
N
VAL
60
A
N
VAL
60
A
N
MET
59
A
N
MET
59
A
O
GLY
148
A
O
GLY
148
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
HIS
4
A
HIS
4
1
Y
1
A
ASP
5
A
ASP
5
1
Y
1
A
MET
29
A
MET
29
1
Y
1
A
PRO
30
A
PRO
30
1
Y
1
A
GLY
31
A
GLY
31
1
Y
1
A
GLY
32
A
GLY
32
1
Y
1
A
GLY
33
A
GLY
33
1
Y
1
A
PRO
136
A
PRO
136
1
Y
1
A
GLU
137
A
GLU
137
1
Y
1
A
ALA
138
A
ALA
138
1
Y
1
A
HIS
139
A
HIS
139
1
Y
1
A
HIS
140
A
HIS
140
1
Y
1
A
GLU
141
A
GLU
141
1
Y
1
A
GLU
142
A
GLU
142
1
Y
1
A
ALA
143
A
ALA
143
1
Y
1
A
ASP
144
A
ASP
144
1
Y
1
A
MET
145
A
MET
145
1
Y
1
A
C1'
APR
208
PLANAR
1
A
C1D
APR
208
WRONG HAND
1
A
ALA
82
-38.81
130.32
1
A
LEU
108
-104.07
-60.03
1
A
PHE
117
-142.87
-3.35
1
A
THR
198
-141.56
-27.08
0.266
0.205
2.0
30
1560
15604
15604
random
1
0
MIR
Engh & Huber
2.0
30
86
1590
37
0
1467
0.0233
1.479
1.268
2.195
2.0
30
1MQE
15835
15604
0
0
0.075
1
21.3
98.6
2.0
2.07
0.336
1
97.5
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Structure of the MT-ADPRase in complex with gadolidium and ADP-ribose, a Nudix enzyme
1
N
N
2
N
N
3
N
N
4
N
N
The second part of the biological assembly is generated
by the two fold axis
A
PRO
85
A
PRO
85
HELX_P
A
GLY
99
A
GLY
99
1
1
15
A
ILE
152
A
ILE
152
HELX_P
A
LEU
160
A
LEU
160
1
2
9
A
ASN
166
A
ASN
166
HELX_P
A
THR
181
A
THR
181
1
3
16
A
THR
198
A
THR
198
HELX_P
A
ARG
204
A
ARG
204
1
4
7
metalc
2.633
A
GLU
93
A
OE2
GLU
93
1_555
A
GD3
301
C
GD
GD3
1_555
metalc
2.383
A
APR
208
B
O1A
APR
1_555
A
GD3
301
C
GD
GD3
1_555
metalc
2.890
A
GD3
301
C
GD
GD3
1_555
A
HOH
302
D
O
HOH
1_555
metalc
2.606
A
GD3
301
C
GD
GD3
1_555
A
HOH
303
D
O
HOH
1_555
HYDROLASE
Nudix hydrolase, Rv1700, ADPR, Mycobacterium Tuberculosis, HYDROLASE
O33199_MYCTU
UNP
1
1
O33199
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
1
207
1MQE
1
207
O33199
A
1
1
207
3
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
8
A
THR
8
A
THR
16
A
THR
16
A
PHE
20
A
PHE
20
A
VAL
27
A
VAL
27
A
VAL
35
A
VAL
35
A
HIS
42
A
HIS
42
A
ALA
76
A
ALA
76
A
LEU
78
A
LEU
78
A
ALA
45
A
ALA
45
A
ALA
50
A
ALA
50
A
VAL
122
A
VAL
122
A
GLU
132
A
GLU
132
A
LEU
100
A
LEU
100
A
LEU
111
A
LEU
111
A
ARG
69
A
ARG
69
A
GLU
73
A
GLU
73
A
ASN
56
A
ASN
56
A
ARG
64
A
ARG
64
A
MET
147
A
MET
147
A
PRO
151
A
PRO
151
BINDING SITE FOR RESIDUE APR A 208
A
APR
208
Software
23
BINDING SITE FOR RESIDUE GD3 A 301
A
GD3
301
Software
4
A
ILE
19
A
ILE
19
23
1_555
A
THR
36
A
THR
36
23
12_555
A
ARG
37
A
ARG
37
23
12_555
A
GLU
38
A
GLU
38
23
12_555
A
ALA
45
A
ALA
45
23
1_555
A
ARG
64
A
ARG
64
23
1_555
A
ALA
76
A
ALA
76
23
1_555
A
GLY
77
A
GLY
77
23
1_555
A
LEU
78
A
LEU
78
23
1_555
A
PRO
115
A
PRO
115
23
12_555
A
GLY
116
A
GLY
116
23
12_555
A
GLU
120
A
GLU
120
23
1_555
A
ASN
166
A
ASN
166
23
1_555
A
ILE
168
A
ILE
168
23
1_555
A
GD3
301
C
GD3
23
1_555
A
HOH
302
D
HOH
23
1_555
A
HOH
303
D
HOH
23
1_555
A
HOH
323
D
HOH
23
1_555
A
HOH
355
D
HOH
23
1_555
A
HOH
358
D
HOH
23
1_555
A
HOH
361
D
HOH
23
1_555
A
HOH
378
D
HOH
23
1_555
A
HOH
385
D
HOH
23
1_555
A
GLU
93
A
GLU
93
4
1_555
A
APR
208
B
APR
4
1_555
A
HOH
302
D
HOH
4
1_555
A
HOH
303
D
HOH
4
1_555
178
P 61 2 2