0.015651
0.009036
0.000000
0.000000
0.018072
0.000000
0.000000
0.000000
0.005493
0.00000
0.00000
0.00000
Kang, L.-W.
Gabelli, S.B.
Bianchet, M.A.
Cunningham, J.E.
O'Handley, S.F.
Amzel, L.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
63.894
63.894
182.059
C11 H17 N5 O9 P2
425.228
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
ALPHA,BETA-METHYLENEADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
C
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
N
N
46
S
C
N
47
N
C
N
48
N
O
N
49
N
C
N
50
N
O
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
C
N
65
N
N
N
66
N
C
N
67
N
N
N
68
N
N
N
69
N
O
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
Y
172
N
C
Y
173
N
N
Y
174
N
C
Y
175
N
C
Y
176
N
N
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
S
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
S
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
MN
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
O
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
N
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
Y
32
N
sing
Y
33
N
sing
Y
34
N
doub
N
35
N
sing
Y
36
N
sing
Y
37
N
sing
Y
38
N
doub
N
39
N
sing
Y
40
N
doub
N
41
N
sing
N
42
N
sing
Y
43
N
sing
Y
44
N
doub
N
45
N
sing
Y
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
1015
1023
10.1016/S0969-2126(03)00154-0
12906832
Structure and mechanism of MT-ADPRase, a Nudix hydrolase from Mycobacterium tuberculosis
2003
10.2210/pdb1mr2/pdb
pdb_00001mr2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
mirrors
IMAGE PLATE
2002-01-15
RIGAKU RAXIS IV
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
22920.846
ADPR pyrophosphatase
3.6.1.13
1
man
polymer
54.938
MANGANESE (II) ION
1
syn
non-polymer
425.228
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
1
syn
non-polymer
18.015
water
58
nat
water
ADPRase, MutT/nudix family protein, Hypothetical protein Rv1700
no
no
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
sample
Rv1700
1773
Mycobacterium tuberculosis
562
Escherichia coli
BLR(DE3)
plasmid
pET11b
1
2.34
47.41
VAPOR DIFFUSION, HANGING DROP
7.5
Sodium formate, Tris HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-08-05
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein complexed with ADPR
The same protein (apo enzyme)
The same protein complexed with gadolidium
The same protein complexed with three Mn2+ ions and AMP-CP
RCSB
Y
RCSB
2002-09-17
REL
MN
MANGANESE (II) ION
A12
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
HOH
water
MN
401
2
MN
MN
401
A
A12
301
3
A12
A12
301
A
HOH
1
4
HOH
HOH
402
A
HOH
2
4
HOH
HOH
403
A
HOH
3
4
HOH
HOH
404
A
HOH
4
4
HOH
HOH
405
A
HOH
5
4
HOH
HOH
406
A
HOH
6
4
HOH
HOH
407
A
HOH
7
4
HOH
HOH
408
A
HOH
8
4
HOH
HOH
409
A
HOH
9
4
HOH
HOH
410
A
HOH
10
4
HOH
HOH
411
A
HOH
11
4
HOH
HOH
412
A
HOH
12
4
HOH
HOH
413
A
HOH
13
4
HOH
HOH
414
A
HOH
14
4
HOH
HOH
415
A
HOH
15
4
HOH
HOH
416
A
HOH
16
4
HOH
HOH
417
A
HOH
17
4
HOH
HOH
418
A
HOH
18
4
HOH
HOH
419
A
HOH
19
4
HOH
HOH
420
A
HOH
20
4
HOH
HOH
421
A
HOH
21
4
HOH
HOH
422
A
HOH
22
4
HOH
HOH
423
A
HOH
23
4
HOH
HOH
424
A
HOH
24
4
HOH
HOH
425
A
HOH
25
4
HOH
HOH
426
A
HOH
26
4
HOH
HOH
427
A
HOH
27
4
HOH
HOH
428
A
HOH
28
4
HOH
HOH
429
A
HOH
29
4
HOH
HOH
430
A
HOH
30
4
HOH
HOH
431
A
HOH
31
4
HOH
HOH
432
A
HOH
32
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
39
4
HOH
HOH
439
A
HOH
40
4
HOH
HOH
440
A
HOH
41
4
HOH
HOH
441
A
HOH
42
4
HOH
HOH
442
A
HOH
43
4
HOH
HOH
443
A
HOH
44
4
HOH
HOH
444
A
HOH
45
4
HOH
HOH
445
A
HOH
46
4
HOH
HOH
446
A
HOH
47
4
HOH
HOH
447
A
HOH
48
4
HOH
HOH
448
A
HOH
49
4
HOH
HOH
449
A
HOH
50
4
HOH
HOH
450
A
HOH
51
4
HOH
HOH
451
A
HOH
52
4
HOH
HOH
452
A
HOH
53
4
HOH
HOH
453
A
HOH
55
4
HOH
HOH
454
A
HOH
56
4
HOH
HOH
455
A
HOH
57
4
HOH
HOH
456
A
HOH
58
4
HOH
HOH
457
A
HOH
59
4
HOH
HOH
458
A
HOH
60
4
HOH
HOH
459
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
PHE
6
n
6
PHE
6
A
GLU
7
n
7
GLU
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
SER
10
n
10
SER
10
A
SER
11
n
11
SER
11
A
GLU
12
n
12
GLU
12
A
THR
13
n
13
THR
13
A
LEU
14
n
14
LEU
14
A
HIS
15
n
15
HIS
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
PHE
20
n
20
PHE
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
ARG
24
n
24
ARG
24
A
ASP
25
n
25
ASP
25
A
GLN
26
n
26
GLN
26
A
VAL
27
n
27
VAL
27
A
ARG
28
n
28
ARG
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
ILE
34
n
34
ILE
34
A
VAL
35
n
35
VAL
35
A
THR
36
n
36
THR
36
A
ARG
37
n
37
ARG
37
A
GLU
38
n
38
GLU
38
A
VAL
39
n
39
VAL
39
A
VAL
40
n
40
VAL
40
A
GLU
41
n
41
GLU
41
A
HIS
42
n
42
HIS
42
A
PHE
43
n
43
PHE
43
A
GLY
44
n
44
GLY
44
A
ALA
45
n
45
ALA
45
A
VAL
46
n
46
VAL
46
A
ALA
47
n
47
ALA
47
A
ILE
48
n
48
ILE
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
MET
51
n
51
MET
51
A
ASP
52
n
52
ASP
52
A
ASP
53
n
53
ASP
53
A
ASN
54
n
54
ASN
54
A
GLY
55
n
55
GLY
55
A
ASN
56
n
56
ASN
56
A
ILE
57
n
57
ILE
57
A
PRO
58
n
58
PRO
58
A
MET
59
n
59
MET
59
A
VAL
60
n
60
VAL
60
A
TYR
61
n
61
TYR
61
A
GLN
62
n
62
GLN
62
A
TYR
63
n
63
TYR
63
A
ARG
64
n
64
ARG
64
A
HIS
65
n
65
HIS
65
A
THR
66
n
66
THR
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
ARG
70
n
70
ARG
70
A
LEU
71
n
71
LEU
71
A
TRP
72
n
72
TRP
72
A
GLU
73
n
73
GLU
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
ASP
80
n
80
ASP
80
A
VAL
81
n
81
VAL
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
GLU
84
n
84
GLU
84
A
PRO
85
n
85
PRO
85
A
PRO
86
n
86
PRO
86
A
HIS
87
n
87
HIS
87
A
LEU
88
n
88
LEU
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
ARG
92
n
92
ARG
92
A
GLU
93
n
93
GLU
93
A
LEU
94
n
94
LEU
94
A
ARG
95
n
95
ARG
95
A
GLU
96
n
96
GLU
96
A
GLU
97
n
97
GLU
97
A
VAL
98
n
98
VAL
98
A
GLY
99
n
99
GLY
99
A
LEU
100
n
100
LEU
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
THR
104
n
104
THR
104
A
TRP
105
n
105
TRP
105
A
GLN
106
n
106
GLN
106
A
VAL
107
n
107
VAL
107
A
LEU
108
n
108
LEU
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
ASP
112
n
112
ASP
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
PRO
115
n
115
PRO
115
A
GLY
116
n
116
GLY
116
A
PHE
117
n
117
PHE
117
A
SER
118
n
118
SER
118
A
ASP
119
n
119
ASP
119
A
GLU
120
n
120
GLU
120
A
SER
121
n
121
SER
121
A
VAL
122
n
122
VAL
122
A
ARG
123
n
123
ARG
123
A
VAL
124
n
124
VAL
124
A
TYR
125
n
125
TYR
125
A
LEU
126
n
126
LEU
126
A
ALA
127
n
127
ALA
127
A
THR
128
n
128
THR
128
A
GLY
129
n
129
GLY
129
A
LEU
130
n
130
LEU
130
A
ARG
131
n
131
ARG
131
A
GLU
132
n
132
GLU
132
A
VAL
133
n
133
VAL
133
A
GLY
134
n
134
GLY
134
A
ARG
135
n
135
ARG
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
THR
146
n
146
THR
146
A
MET
147
n
147
MET
147
A
GLY
148
n
148
GLY
148
A
TRP
149
n
149
TRP
149
A
TYR
150
n
150
TYR
150
A
PRO
151
n
151
PRO
151
A
ILE
152
n
152
ILE
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
ARG
157
n
157
ARG
157
A
ARG
158
n
158
ARG
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
ARG
161
n
161
ARG
161
A
GLY
162
n
162
GLY
162
A
GLU
163
n
163
GLU
163
A
ILE
164
n
164
ILE
164
A
VAL
165
n
165
VAL
165
A
ASN
166
n
166
ASN
166
A
SER
167
n
167
SER
167
A
ILE
168
n
168
ILE
168
A
ALA
169
n
169
ALA
169
A
ILE
170
n
170
ILE
170
A
ALA
171
n
171
ALA
171
A
GLY
172
n
172
GLY
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
ALA
175
n
175
ALA
175
A
VAL
176
n
176
VAL
176
A
HIS
177
n
177
HIS
177
A
ALA
178
n
178
ALA
178
A
VAL
179
n
179
VAL
179
A
THR
180
n
180
THR
180
A
THR
181
n
181
THR
181
A
GLY
182
n
182
GLY
182
A
PHE
183
n
183
PHE
183
A
ALA
184
n
184
ALA
184
A
GLN
185
n
185
GLN
185
A
PRO
186
n
186
PRO
186
A
ARG
187
n
187
ARG
187
A
PRO
188
n
188
PRO
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
THR
191
n
191
THR
191
A
GLU
192
n
192
GLU
192
A
TRP
193
n
193
TRP
193
A
ILE
194
n
194
ILE
194
A
ASP
195
n
195
ASP
195
A
ARG
196
n
196
ARG
196
A
PRO
197
n
197
PRO
197
A
THR
198
n
198
THR
198
A
ALA
199
n
199
ALA
199
A
PHE
200
n
200
PHE
200
A
ALA
201
n
201
ALA
201
A
ALA
202
n
202
ALA
202
A
ARG
203
n
203
ARG
203
A
ARG
204
n
204
ARG
204
A
ALA
205
n
205
ALA
205
A
GLU
206
n
206
GLU
206
A
ARG
207
n
207
ARG
207
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
6950
-52
16110
A
ALA
76
A
O
ALA
76
1_555
A
MN
401
B
MN
MN
1_555
A
A12
301
C
O3B
A12
1_555
104.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
30.3431666667
A
N
HIS
15
A
N
HIS
15
A
O
LEU
22
A
O
LEU
22
A
N
ALA
21
A
N
ALA
21
A
O
GLU
41
A
O
GLU
41
A
O
GLY
77
A
O
GLY
77
A
N
VAL
46
A
N
VAL
46
A
N
VAL
49
A
N
VAL
49
A
O
TYR
125
A
O
TYR
125
A
O
VAL
122
A
O
VAL
122
A
N
LEU
111
A
N
LEU
111
A
O
LEU
71
A
O
LEU
71
A
N
GLN
62
A
N
GLN
62
A
N
ILE
57
A
N
ILE
57
A
O
TYR
150
A
O
TYR
150
1
A
CB
ASP
53
A
CB
ASP
53
1
Y
1
A
CG
ASP
53
A
CG
ASP
53
1
Y
1
A
OD1
ASP
53
A
OD1
ASP
53
1
Y
1
A
OD2
ASP
53
A
OD2
ASP
53
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
HIS
4
A
HIS
4
1
Y
1
A
ASP
5
A
ASP
5
1
Y
1
A
MET
29
A
MET
29
1
Y
1
A
PRO
30
A
PRO
30
1
Y
1
A
GLY
31
A
GLY
31
1
Y
1
A
GLY
32
A
GLY
32
1
Y
1
A
GLY
33
A
GLY
33
1
Y
1
A
PRO
136
A
PRO
136
1
Y
1
A
GLU
137
A
GLU
137
1
Y
1
A
ALA
138
A
ALA
138
1
Y
1
A
HIS
139
A
HIS
139
1
Y
1
A
HIS
140
A
HIS
140
1
Y
1
A
GLU
141
A
GLU
141
1
Y
1
A
GLU
142
A
GLU
142
1
Y
1
A
ALA
143
A
ALA
143
1
Y
1
A
ASP
144
A
ASP
144
1
Y
1
A
MET
145
A
MET
145
1
Y
1
A
C1'
A12
301
PLANAR
1
A
LEU
108
-93.25
-64.84
1
A
THR
198
-145.47
-21.83
1
A
ALA
205
-74.68
38.11
0.2598
0.205
2.3
30
1027
10273
10273
random
1
0
MIR
Engh & Huber
2.3
30
58
1549
28
0
1463
0.0111
1.376
1.322
2.325
2.3
30
1MR2
10522
10273
0
0
0.12
1
11.4
97.8
2.3
2.38
5.2
0.411
1
97.7
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Structure of the MT-ADPRase in complex with 1 Mn2+ ion and AMP-CP (a inhibitor), a nudix enzyme
1
N
N
2
N
N
3
N
N
4
N
N
The second part of the biological assembly is generated
by the two fold axis
A
PRO
85
A
PRO
85
HELX_P
A
GLY
99
A
GLY
99
1
1
15
A
ILE
152
A
ILE
152
HELX_P
A
LEU
160
A
LEU
160
1
2
9
A
ASN
166
A
ASN
166
HELX_P
A
THR
181
A
THR
181
1
3
16
A
THR
198
A
THR
198
HELX_P
A
ARG
204
A
ARG
204
1
4
7
metalc
2.405
A
ALA
76
A
O
ALA
76
1_555
A
MN
401
B
MN
MN
1_555
metalc
2.164
A
A12
301
C
O3B
A12
1_555
A
MN
401
B
MN
MN
1_555
HYDROLASE
Nudix hydrolase, Rv1700, ADPR, Mycobacterium Tuberculosis, HYDROLASE
O33199_MYCTU
UNP
1
1
O33199
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD
VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL
RGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
1
207
1MR2
1
207
O33199
A
1
1
207
3
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
10
A
SER
10
A
THR
16
A
THR
16
A
PHE
20
A
PHE
20
A
VAL
27
A
VAL
27
A
VAL
35
A
VAL
35
A
HIS
42
A
HIS
42
A
ALA
76
A
ALA
76
A
LEU
78
A
LEU
78
A
ALA
45
A
ALA
45
A
ALA
50
A
ALA
50
A
VAL
122
A
VAL
122
A
GLU
132
A
GLU
132
A
LEU
100
A
LEU
100
A
LEU
111
A
LEU
111
A
ARG
70
A
ARG
70
A
GLU
73
A
GLU
73
A
ASN
56
A
ASN
56
A
TYR
63
A
TYR
63
A
MET
147
A
MET
147
A
PRO
151
A
PRO
151
BINDING SITE FOR RESIDUE MN A 401
A
MN
401
Software
3
BINDING SITE FOR RESIDUE A12 A 301
A
A12
301
Software
11
A
ALA
76
A
ALA
76
3
1_555
A
A12
301
C
A12
3
1_555
A
HOH
403
D
HOH
3
1_555
A
ILE
19
A
ILE
19
11
1_555
A
THR
36
A
THR
36
11
12_555
A
ARG
37
A
ARG
37
11
12_555
A
GLU
38
A
GLU
38
11
12_555
A
ARG
64
A
ARG
64
11
1_555
A
ALA
76
A
ALA
76
11
1_555
A
GLY
116
A
GLY
116
11
12_555
A
MN
401
B
MN
11
1_555
A
HOH
405
D
HOH
11
1_555
A
HOH
423
D
HOH
11
1_555
A
HOH
451
D
HOH
11
1_555
178
P 61 2 2