1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lay, F.T. Schirra, H.J. Scanlon, M.J. Anderson, M.A. Craik, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking UK J.MOL.BIOL. JMOBAK 0070 0022-2836 325 175 188 10.1016/S0022-2836(02)01103-8 12473460 The Three-dimensional Solution Structure of NaD1, a New Floral Defensin from Nicotiana alata and its Application to a Homology Model of the Crop Defense Protein alfAFP 2003 10.2210/pdb1mr4/pdb pdb_00001mr4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5315.377 Nicotiana alata plant defensin 1 (NaD1) residues 1-47 1 nat polymer Flower-specific gamma-thionin no no RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n common tobacco Nicotiana sample 4097 Nicotiana tabacum Flower buds database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-09-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y PDBJ 2002-09-18 REL This structure was determined using standard 2D homonuclear techniques. structures with the lowest energy 50 20 2D NOESY DQF-COSY 2D NOESY 2D NOESY 2D NOESY 1mM 4 ambient 298 K 1mM 4 ambient 303 K 1mM 4 ambient 310 K Simulated annealing with torsion angle dynamics and subsequent refinement in CNS 1mM NaD1, 90%H2O, 10%D2O 90% H2O/10% D2O 1mM NaD1, 99.9%D2O 99.9%D2O Bruker collection XwinNMR 2.6 Bruker processing XwinNMR 2.6 Bartels data analysis XEASY Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 Linge data analysis ARIA 500 Bruker ARX 750 Bruker DMX ARG 1 n 1 ARG 1 A GLU 2 n 2 GLU 2 A CYS 3 n 3 CYS 3 A LYS 4 n 4 LYS 4 A THR 5 n 5 THR 5 A GLU 6 n 6 GLU 6 A SER 7 n 7 SER 7 A ASN 8 n 8 ASN 8 A THR 9 n 9 THR 9 A PHE 10 n 10 PHE 10 A PRO 11 n 11 PRO 11 A GLY 12 n 12 GLY 12 A ILE 13 n 13 ILE 13 A CYS 14 n 14 CYS 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A LYS 17 n 17 LYS 17 A PRO 18 n 18 PRO 18 A PRO 19 n 19 PRO 19 A CYS 20 n 20 CYS 20 A ARG 21 n 21 ARG 21 A LYS 22 n 22 LYS 22 A ALA 23 n 23 ALA 23 A CYS 24 n 24 CYS 24 A ILE 25 n 25 ILE 25 A SER 26 n 26 SER 26 A GLU 27 n 27 GLU 27 A LYS 28 n 28 LYS 28 A PHE 29 n 29 PHE 29 A THR 30 n 30 THR 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A HIS 33 n 33 HIS 33 A CYS 34 n 34 CYS 34 A SER 35 n 35 SER 35 A LYS 36 n 36 LYS 36 A ILE 37 n 37 ILE 37 A LEU 38 n 38 LEU 38 A ARG 39 n 39 ARG 39 A ARG 40 n 40 ARG 40 A CYS 41 n 41 CYS 41 A LEU 42 n 42 LEU 42 A CYS 43 n 43 CYS 43 A THR 44 n 44 THR 44 A LYS 45 n 45 LYS 45 A PRO 46 n 46 PRO 46 A CYS 47 n 47 CYS 47 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 5 A N THR 5 A O CYS 43 A O CYS 43 A O LEU 42 A O LEU 42 A N HIS 33 A N HIS 33 2 A A H1 O ARG CYS 1 47 1.54 3 A A HZ2 HG LYS LEU 4 42 1.24 3 A A HE OE1 ARG GLU 1 2 1.55 3 A A OE1 HZ3 GLU LYS 27 28 1.55 4 A A H1 OXT ARG CYS 1 47 1.50 4 A A OE2 HE GLU ARG 6 40 1.59 5 A A HE2 HG2 LYS ARG 17 21 1.22 5 A A H1 OXT ARG CYS 1 47 1.53 5 A A OE1 HZ3 GLU LYS 27 28 1.59 6 A A H2 OXT ARG CYS 1 47 1.52 7 A A H2 O ARG CYS 1 47 1.58 8 A A OE2 HZ1 GLU LYS 2 4 1.55 9 A A H2 O ARG CYS 1 47 1.54 9 A A OE1 HZ1 GLU LYS 2 4 1.57 10 A A H1 O ARG CYS 1 47 1.53 10 A A HE OD1 ARG ASP 21 31 1.59 10 A A OE1 HZ1 GLU LYS 27 28 1.59 11 A A H2 O ARG CYS 1 47 1.53 11 A A HZ3 OD1 LYS ASP 17 31 1.55 12 A A HZ2 O LYS GLY 17 32 1.59 12 A A OE2 HH21 GLU ARG 6 40 1.60 13 A A OE1 HZ1 GLU LYS 27 45 1.53 13 A A OE2 HZ2 GLU LYS 27 28 1.58 14 A A HH12 OD1 ARG ASP 21 31 1.59 15 A A OE1 HZ3 GLU LYS 27 45 1.58 15 A A OE2 HZ3 GLU LYS 27 28 1.60 16 A A H1 OXT ARG CYS 1 47 1.57 17 A A H3 OXT ARG CYS 1 47 1.54 17 A A HZ1 OE2 LYS GLU 4 6 1.54 17 A A OE1 HZ2 GLU LYS 27 28 1.55 20 A A H1 O ARG CYS 1 47 1.54 20 A A OE2 HZ2 GLU LYS 27 28 1.60 1 A PRO 11 -88.35 48.70 1 A PHE 29 -138.91 -144.80 1 A THR 30 -161.46 -48.57 1 A LYS 36 -76.46 47.22 1 A ILE 37 -135.28 -44.16 1 A LEU 38 -135.09 -125.83 1 A ARG 39 -150.99 52.21 2 A PRO 11 -63.40 51.81 2 A GLU 27 -80.57 -114.51 2 A LYS 28 -143.30 46.47 2 A PHE 29 -118.50 -141.55 2 A THR 30 -159.05 -45.75 2 A LYS 36 -84.08 33.07 2 A ILE 37 -149.34 -46.13 2 A PRO 46 -69.47 64.61 3 A GLU 2 68.49 61.47 3 A GLU 27 -84.73 -134.59 3 A LYS 36 -81.46 33.03 3 A ILE 37 -158.95 -42.21 3 A PRO 46 -38.82 138.74 4 A GLU 2 158.71 35.52 4 A GLU 27 -85.92 -153.29 4 A LYS 28 -103.71 55.96 4 A PHE 29 -129.04 -128.54 4 A THR 30 -178.26 -33.38 4 A LYS 36 -77.22 47.65 4 A ILE 37 -133.95 -40.69 4 A LEU 38 -135.96 -123.63 4 A ARG 39 -151.21 48.96 5 A ASN 8 -91.28 46.22 5 A THR 9 -154.71 -34.67 5 A PHE 29 -128.33 -136.30 5 A THR 30 -169.53 -42.06 5 A HIS 33 179.44 160.68 5 A LYS 36 -83.92 44.66 5 A ILE 37 -146.71 -46.05 5 A PRO 46 -69.63 65.63 6 A GLU 27 -89.51 -125.85 6 A PHE 29 -122.48 -146.04 6 A THR 30 -152.65 -44.33 6 A LYS 36 -85.92 31.01 6 A ILE 37 -142.96 -50.90 7 A SER 7 -69.76 95.59 7 A ILE 15 -138.11 -44.62 7 A GLU 27 -85.27 -152.85 7 A PHE 29 -88.51 -143.32 7 A THR 30 -170.88 -33.31 7 A ILE 37 -145.75 -49.43 7 A PRO 46 -69.87 68.66 8 A ILE 15 -138.16 -47.15 8 A PHE 29 -122.04 -136.16 8 A THR 30 -164.95 -35.53 8 A LYS 36 -85.54 34.52 8 A ILE 37 -146.59 -48.66 9 A GLU 2 172.65 34.32 9 A GLU 27 -85.63 -138.71 9 A LYS 28 -117.30 62.60 9 A PHE 29 -134.16 -128.09 9 A THR 30 -178.13 -31.88 9 A LYS 36 -91.57 38.02 9 A ILE 37 -142.64 -45.67 9 A CYS 41 -67.59 95.43 10 A PRO 11 -66.69 52.40 10 A GLU 27 -80.46 -135.68 10 A PHE 29 -137.50 -133.78 10 A THR 30 -165.70 -38.96 10 A LYS 36 -79.20 21.29 10 A ILE 37 -153.32 -46.93 11 A PRO 11 -68.55 50.09 11 A GLU 27 -86.33 -145.78 11 A LYS 28 -106.83 61.38 11 A PHE 29 -130.76 -135.28 11 A THR 30 -168.53 -31.36 11 A LYS 36 -69.13 4.89 11 A LEU 38 -146.77 -118.52 11 A ARG 39 -150.90 45.86 12 A SER 7 -35.52 132.26 12 A GLU 27 -77.78 -143.69 12 A PHE 29 -119.28 -139.76 12 A THR 30 -163.67 -32.72 12 A ILE 37 -146.79 -47.05 13 A GLU 27 -74.94 -83.40 13 A LYS 28 178.63 40.75 13 A HIS 33 -176.36 149.44 13 A ILE 37 -138.07 -47.88 13 A LEU 38 -104.24 -141.51 13 A ARG 39 -151.97 53.65 14 A GLU 2 70.56 54.69 14 A PRO 11 -69.26 49.53 14 A PHE 29 -134.50 -143.37 14 A THR 30 -166.03 -41.74 14 A LYS 36 -82.77 35.99 14 A ILE 37 -148.87 -47.57 15 A PRO 11 -92.70 55.24 15 A ILE 15 -131.05 -40.57 15 A GLU 27 -67.29 -77.48 15 A LYS 28 179.10 34.69 15 A PHE 29 -105.93 -139.27 15 A THR 30 -166.87 -38.68 15 A LYS 36 -79.60 40.30 15 A ILE 37 -146.39 -42.96 16 A GLU 2 72.09 49.79 16 A GLU 27 -79.65 -149.68 16 A LYS 28 -108.13 55.46 16 A PHE 29 -115.76 -144.80 16 A THR 30 -162.01 -34.40 16 A LYS 36 -74.29 46.88 16 A ILE 37 -152.64 11.02 16 A LEU 38 -174.96 -137.53 16 A ARG 39 -151.50 56.45 17 A GLU 27 -82.37 -132.70 17 A PHE 29 -141.25 -140.74 17 A THR 30 -164.03 -37.75 17 A LYS 36 -78.05 46.76 17 A ILE 37 -144.37 -44.25 17 A LEU 38 -124.38 -133.84 17 A ARG 39 -150.82 65.68 18 A SER 7 -35.96 127.87 18 A PHE 10 -35.10 113.01 18 A GLU 27 -67.24 -90.62 18 A LYS 28 -169.65 43.48 18 A PHE 29 -114.66 -139.10 18 A THR 30 -160.98 -31.13 18 A LYS 36 -86.71 30.38 18 A ILE 37 -140.68 -54.22 18 A LEU 38 -95.71 -148.44 18 A ARG 39 -151.49 55.83 19 A PRO 11 -62.22 56.97 19 A GLU 27 -83.91 -149.52 19 A PHE 29 -95.27 -139.95 19 A THR 30 -179.84 -41.39 19 A HIS 33 -171.43 149.83 19 A LYS 36 -90.14 30.49 19 A ILE 37 -149.16 -51.15 20 A ASN 8 -90.05 41.41 20 A THR 9 -155.47 -41.40 20 A GLU 27 -86.32 -158.82 20 A PHE 29 -138.49 -139.08 20 A THR 30 -169.62 -32.88 20 A SER 35 54.46 137.39 20 A LYS 36 -92.05 41.64 20 A ILE 37 -158.00 -48.78 20 A LEU 38 -122.77 -119.95 20 A ARG 39 -150.86 56.20 Solution Structure of NaD1 from Nicotiana alata 1 N N A THR 16 A THR 16 HELX_P A GLU 27 A GLU 27 1 1 12 disulf 2.026 A CYS 3 A SG CYS 3 1_555 A CYS 47 A SG CYS 47 1_555 disulf 2.032 A CYS 14 A SG CYS 14 1_555 A CYS 34 A SG CYS 34 1_555 disulf 2.029 A CYS 20 A SG CYS 20 1_555 A CYS 41 A SG CYS 41 1_555 disulf 2.027 A CYS 24 A SG CYS 24 1_555 A CYS 43 A SG CYS 43 1_555 PLANT PROTEIN cysteine-stabilized alpha-beta motif, plant defensin fold, PLANT PROTEIN THGF_TOBAC UNP 1 26 P32026 RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKLLRRCLCTKPC 26 72 1MR4 1 47 P32026 A 1 1 47 1 LEU conflict ILE 37 1MR4 A P32026 UNP 62 37 3 anti-parallel anti-parallel A CYS 3 A CYS 3 A GLU 6 A GLU 6 A CYS 41 A CYS 41 A LYS 45 A LYS 45 A ASP 31 A ASP 31 A CYS 34 A CYS 34