0.015106 0.000000 0.000000 0.000000 0.013280 0.000000 0.000000 0.000000 0.009506 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 CIS PROLINE - PRO L 95 CIS PROLINE - PRO L 141 CIS PROLINE - PRO H 149 CIS PROLINE - PRO H 200 Pokkuluri, P.R. Cygler, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 66.200 75.300 105.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C10 H14 N4 O11 P2 428.186 INOSINE-5'-DIPHOSPHATE non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H5 N2 1 69.085 IMIDAZOLE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK J.Mol.Biol. JMOBAK 0070 0022-2836 243 283 297 10.1006/jmbi.1994.1654 7523684 Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 24180.900 IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN) 1 man polymer 23020.561 IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN) 1 man polymer 65.409 ZINC ION 1 syn non-polymer 69.085 IMIDAZOLE 1 syn non-polymer 428.186 INOSINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 103 nat water no no DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGKER QNGVLNSWTDQNSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGKER QNGVLNSWTDQNSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no QVQLQQSGAELVKPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGEIDPSDSYTNYNQKFKGKATLTVDTSSSTAY MQLSSLTSEDSAVYYCANLRGYFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSG SLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP QVQLQQSGAELVKPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGEIDPSDSYTNYNQKFKGKATLTVDTSSSTAY MQLSSLTSEDSAVYYCANLRGYFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSG SLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse sample 10090 Mus musculus house mouse sample 10090 Mus musculus 2.78 55.69 repository Initial release Version format compliance Version format compliance 1 0 1995-02-14 1 1 2008-03-24 1 2 2011-07-13 Y 1994-06-13 REL REL ZN ZINC ION IMD IMIDAZOLE IDP INOSINE-5'-DIPHOSPHATE HOH water ZN 600 3 ZN ZN 600 L IMD 902 4 IMD IMD 902 L IDP 901 5 IDP IDP 901 L HOH 601 6 HOH HOH 601 L HOH 607 6 HOH HOH 607 L HOH 608 6 HOH HOH 608 L HOH 609 6 HOH HOH 609 L HOH 612 6 HOH HOH 612 L HOH 613 6 HOH HOH 613 L HOH 620 6 HOH HOH 620 L HOH 623 6 HOH HOH 623 L HOH 624 6 HOH HOH 624 L HOH 625 6 HOH HOH 625 L HOH 628 6 HOH HOH 628 L HOH 629 6 HOH HOH 629 L HOH 634 6 HOH HOH 634 L HOH 635 6 HOH HOH 635 L HOH 636 6 HOH HOH 636 L HOH 637 6 HOH HOH 637 L HOH 639 6 HOH HOH 639 L HOH 640 6 HOH HOH 640 L HOH 641 6 HOH HOH 641 L HOH 642 6 HOH HOH 642 L HOH 644 6 HOH HOH 644 L HOH 645 6 HOH HOH 645 L HOH 647 6 HOH HOH 647 L HOH 650 6 HOH HOH 650 L HOH 651 6 HOH HOH 651 L HOH 652 6 HOH HOH 652 L HOH 654 6 HOH HOH 654 L HOH 655 6 HOH HOH 655 L HOH 656 6 HOH HOH 656 L HOH 657 6 HOH HOH 657 L HOH 658 6 HOH HOH 658 L HOH 659 6 HOH HOH 659 L HOH 661 6 HOH HOH 661 L HOH 662 6 HOH HOH 662 L HOH 663 6 HOH HOH 663 L HOH 664 6 HOH HOH 664 L HOH 665 6 HOH HOH 665 L HOH 669 6 HOH HOH 669 L HOH 670 6 HOH HOH 670 L HOH 671 6 HOH HOH 671 L HOH 672 6 HOH HOH 672 L HOH 675 6 HOH HOH 675 L HOH 676 6 HOH HOH 676 L HOH 682 6 HOH HOH 682 L HOH 686 6 HOH HOH 686 L HOH 687 6 HOH HOH 687 L HOH 688 6 HOH HOH 688 L HOH 690 6 HOH HOH 690 L HOH 691 6 HOH HOH 691 L HOH 695 6 HOH HOH 695 L HOH 696 6 HOH HOH 696 L HOH 699 6 HOH HOH 699 L HOH 700 6 HOH HOH 700 L HOH 701 6 HOH HOH 701 L HOH 703 6 HOH HOH 703 L HOH 602 6 HOH HOH 602 H HOH 603 6 HOH HOH 603 H HOH 604 6 HOH HOH 604 H HOH 605 6 HOH HOH 605 H HOH 606 6 HOH HOH 606 H HOH 610 6 HOH HOH 610 H HOH 611 6 HOH HOH 611 H HOH 614 6 HOH HOH 614 H HOH 615 6 HOH HOH 615 H HOH 616 6 HOH HOH 616 H HOH 617 6 HOH HOH 617 H HOH 618 6 HOH HOH 618 H HOH 619 6 HOH HOH 619 H HOH 621 6 HOH HOH 621 H HOH 622 6 HOH HOH 622 H HOH 626 6 HOH HOH 626 H HOH 627 6 HOH HOH 627 H HOH 630 6 HOH HOH 630 H HOH 631 6 HOH HOH 631 H HOH 632 6 HOH HOH 632 H HOH 633 6 HOH HOH 633 H HOH 638 6 HOH HOH 638 H HOH 643 6 HOH HOH 643 H HOH 646 6 HOH HOH 646 H HOH 648 6 HOH HOH 648 H HOH 649 6 HOH HOH 649 H HOH 653 6 HOH HOH 653 H HOH 660 6 HOH HOH 660 H HOH 666 6 HOH HOH 666 H HOH 667 6 HOH HOH 667 H HOH 668 6 HOH HOH 668 H HOH 673 6 HOH HOH 673 H HOH 674 6 HOH HOH 674 H HOH 677 6 HOH HOH 677 H HOH 678 6 HOH HOH 678 H HOH 679 6 HOH HOH 679 H HOH 680 6 HOH HOH 680 H HOH 681 6 HOH HOH 681 H HOH 683 6 HOH HOH 683 H HOH 684 6 HOH HOH 684 H HOH 685 6 HOH HOH 685 H HOH 689 6 HOH HOH 689 H HOH 692 6 HOH HOH 692 H HOH 693 6 HOH HOH 693 H HOH 694 6 HOH HOH 694 H HOH 697 6 HOH HOH 697 H HOH 698 6 HOH HOH 698 H HOH 702 6 HOH HOH 702 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L LEU 27 n 29 B LEU 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L SER 27 n 32 E SER 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L ASN 30 n 35 ASN 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L HIS 34 n 39 HIS 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L LYS 45 n 50 LYS 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L PHE 87 n 92 PHE 87 L CYS 88 n 93 CYS 88 L SER 89 n 94 SER 89 L GLN 90 n 95 GLN 90 L SER 91 n 96 SER 91 L THR 92 n 97 THR 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L ARG 96 n 101 ARG 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L GLY 100 n 105 GLY 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L ILE 106 n 111 ILE 106 L LYS 107 n 112 LYS 107 L ARG 108 n 113 ARG 108 L ALA 109 n 114 ALA 109 L ASP 110 n 115 ASP 110 L ALA 111 n 116 ALA 111 L ALA 112 n 117 ALA 112 L PRO 113 n 118 PRO 113 L THR 114 n 119 THR 114 L VAL 115 n 120 VAL 115 L SER 116 n 121 SER 116 L ILE 117 n 122 ILE 117 L PHE 118 n 123 PHE 118 L PRO 119 n 124 PRO 119 L PRO 120 n 125 PRO 120 L SER 121 n 126 SER 121 L SER 122 n 127 SER 122 L GLU 123 n 128 GLU 123 L GLN 124 n 129 GLN 124 L LEU 125 n 130 LEU 125 L THR 126 n 131 THR 126 L SER 127 n 132 SER 127 L GLY 128 n 133 GLY 128 L GLY 129 n 134 GLY 129 L ALA 130 n 135 ALA 130 L SER 131 n 136 SER 131 L VAL 132 n 137 VAL 132 L VAL 133 n 138 VAL 133 L CYS 134 n 139 CYS 134 L PHE 135 n 140 PHE 135 L LEU 136 n 141 LEU 136 L ASN 137 n 142 ASN 137 L ASN 138 n 143 ASN 138 L PHE 139 n 144 PHE 139 L TYR 140 n 145 TYR 140 L PRO 141 n 146 PRO 141 L LYS 142 n 147 LYS 142 L ASP 143 n 148 ASP 143 L ILE 144 n 149 ILE 144 L ASN 145 n 150 ASN 145 L VAL 146 n 151 VAL 146 L LYS 147 n 152 LYS 147 L TRP 148 n 153 TRP 148 L LYS 149 n 154 LYS 149 L ILE 150 n 155 ILE 150 L ASP 151 n 156 ASP 151 L GLY 152 n 157 GLY 152 L LYS 153 n 158 LYS 153 L GLU 154 n 159 GLU 154 L ARG 155 n 160 ARG 155 L GLN 156 n 161 GLN 156 L ASN 157 n 162 ASN 157 L GLY 158 n 163 GLY 158 L VAL 159 n 164 VAL 159 L LEU 160 n 165 LEU 160 L ASN 161 n 166 ASN 161 L SER 162 n 167 SER 162 L TRP 163 n 168 TRP 163 L THR 164 n 169 THR 164 L ASP 165 n 170 ASP 165 L GLN 166 n 171 GLN 166 L ASN 167 n 172 ASN 167 L SER 168 n 173 SER 168 L LYS 169 n 174 LYS 169 L ASP 170 n 175 ASP 170 L SER 171 n 176 SER 171 L THR 172 n 177 THR 172 L TYR 173 n 178 TYR 173 L SER 174 n 179 SER 174 L MET 175 n 180 MET 175 L SER 176 n 181 SER 176 L SER 177 n 182 SER 177 L THR 178 n 183 THR 178 L LEU 179 n 184 LEU 179 L THR 180 n 185 THR 180 L LEU 181 n 186 LEU 181 L THR 182 n 187 THR 182 L LYS 183 n 188 LYS 183 L ASP 184 n 189 ASP 184 L GLU 185 n 190 GLU 185 L TYR 186 n 191 TYR 186 L GLU 187 n 192 GLU 187 L ARG 188 n 193 ARG 188 L HIS 189 n 194 HIS 189 L ASN 190 n 195 ASN 190 L SER 191 n 196 SER 191 L TYR 192 n 197 TYR 192 L THR 193 n 198 THR 193 L CYS 194 n 199 CYS 194 L GLU 195 n 200 GLU 195 L ALA 196 n 201 ALA 196 L THR 197 n 202 THR 197 L HIS 198 n 203 HIS 198 L LYS 199 n 204 LYS 199 L THR 200 n 205 THR 200 L SER 201 n 206 SER 201 L THR 202 n 207 THR 202 L SER 203 n 208 SER 203 L PRO 204 n 209 PRO 204 L ILE 205 n 210 ILE 205 L VAL 206 n 211 VAL 206 L LYS 207 n 212 LYS 207 L SER 208 n 213 SER 208 L PHE 209 n 214 PHE 209 L ASN 210 n 215 ASN 210 L ARG 211 n 216 ARG 211 L n 217 212 L n 218 213 L n 219 214 L n 1 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLN 6 n 6 GLN 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H ALA 9 n 9 ALA 9 H GLU 10 n 10 GLU 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H ALA 16 n 16 ALA 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H LYS 19 n 19 LYS 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H THR 30 n 30 THR 30 H SER 31 n 31 SER 31 H TYR 32 n 32 TYR 32 H TRP 33 n 33 TRP 33 H MET 34 n 34 MET 34 H GLN 35 n 35 GLN 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H LYS 38 n 38 LYS 38 H GLN 39 n 39 GLN 39 H ARG 40 n 40 ARG 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H GLN 43 n 43 GLN 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H GLU 50 n 50 GLU 50 H ILE 51 n 51 ILE 51 H ASP 52 n 52 ASP 52 H PRO 52 n 53 A PRO 52 H SER 53 n 54 SER 53 H ASP 54 n 55 ASP 54 H SER 55 n 56 SER 55 H TYR 56 n 57 TYR 56 H THR 57 n 58 THR 57 H ASN 58 n 59 ASN 58 H TYR 59 n 60 TYR 59 H ASN 60 n 61 ASN 60 H GLN 61 n 62 GLN 61 H LYS 62 n 63 LYS 62 H PHE 63 n 64 PHE 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H LYS 66 n 67 LYS 66 H ALA 67 n 68 ALA 67 H THR 68 n 69 THR 68 H LEU 69 n 70 LEU 69 H THR 70 n 71 THR 70 H VAL 71 n 72 VAL 71 H ASP 72 n 73 ASP 72 H n 74 73 H n 75 74 H n 76 75 H SER 76 n 77 SER 76 H THR 77 n 78 THR 77 H ALA 78 n 79 ALA 78 H TYR 79 n 80 TYR 79 H MET 80 n 81 MET 80 H GLN 81 n 82 GLN 81 H LEU 82 n 83 LEU 82 H SER 82 n 84 A SER 82 H SER 82 n 85 B SER 82 H LEU 82 n 86 C LEU 82 H THR 83 n 87 THR 83 H SER 84 n 88 SER 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H SER 87 n 91 SER 87 H ALA 88 n 92 ALA 88 H VAL 89 n 93 VAL 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ASN 94 n 98 ASN 94 H LEU 95 n 99 LEU 95 H ARG 96 n 100 ARG 96 H GLY 97 n 101 GLY 97 H TYR 98 n 102 TYR 98 H PHE 99 n 103 PHE 99 H ASP 101 n 104 ASP 101 H TYR 102 n 105 TYR 102 H TRP 103 n 106 TRP 103 H GLY 104 n 107 GLY 104 H GLN 105 n 108 GLN 105 H GLY 106 n 109 GLY 106 H THR 107 n 110 THR 107 H THR 108 n 111 THR 108 H LEU 109 n 112 LEU 109 H THR 110 n 113 THR 110 H VAL 111 n 114 VAL 111 H SER 112 n 115 SER 112 H SER 113 n 116 SER 113 H ALA 114 n 117 ALA 114 H LYS 115 n 118 LYS 115 H THR 116 n 119 THR 116 H THR 117 n 120 THR 117 H PRO 118 n 121 PRO 118 H PRO 119 n 122 PRO 119 H SER 120 n 123 SER 120 H VAL 121 n 124 VAL 121 H TYR 122 n 125 TYR 122 H PRO 123 n 126 PRO 123 H LEU 124 n 127 LEU 124 H ALA 125 n 128 ALA 125 H PRO 126 n 129 PRO 126 H GLY 127 n 130 GLY 127 H n 131 130 H n 132 131 H n 133 132 H THR 133 n 134 THR 133 H THR 134 n 135 THR 134 H GLY 135 n 136 GLY 135 H SER 136 n 137 SER 136 H SER 137 n 138 SER 137 H VAL 138 n 139 VAL 138 H THR 139 n 140 THR 139 H LEU 140 n 141 LEU 140 H GLY 141 n 142 GLY 141 H CYS 142 n 143 CYS 142 H LEU 143 n 144 LEU 143 H VAL 144 n 145 VAL 144 H LYS 145 n 146 LYS 145 H GLY 146 n 147 GLY 146 H TYR 147 n 148 TYR 147 H PHE 148 n 149 PHE 148 H PRO 149 n 150 PRO 149 H GLU 150 n 151 GLU 150 H SER 151 n 152 SER 151 H VAL 152 n 153 VAL 152 H THR 153 n 154 THR 153 H VAL 154 n 155 VAL 154 H THR 156 n 156 THR 156 H TRP 157 n 157 TRP 157 H ASN 162 n 158 ASN 162 H SER 163 n 159 SER 163 H GLY 164 n 160 GLY 164 H SER 165 n 161 SER 165 H LEU 166 n 162 LEU 166 H SER 167 n 163 SER 167 H SER 168 n 164 SER 168 H SER 169 n 165 SER 169 H VAL 171 n 166 VAL 171 H HIS 172 n 167 HIS 172 H THR 173 n 168 THR 173 H PHE 174 n 169 PHE 174 H PRO 175 n 170 PRO 175 H ALA 176 n 171 ALA 176 H LEU 177 n 172 LEU 177 H LEU 178 n 173 LEU 178 H GLN 179 n 174 GLN 179 H SER 180 n 175 SER 180 H GLY 183 n 176 GLY 183 H LEU 184 n 177 LEU 184 H TYR 185 n 178 TYR 185 H THR 186 n 179 THR 186 H MET 187 n 180 MET 187 H SER 188 n 181 SER 188 H SER 189 n 182 SER 189 H SER 190 n 183 SER 190 H VAL 191 n 184 VAL 191 H THR 192 n 185 THR 192 H VAL 193 n 186 VAL 193 H PRO 194 n 187 PRO 194 H SER 195 n 188 SER 195 H SER 196 n 189 SER 196 H THR 198 n 190 THR 198 H TRP 199 n 191 TRP 199 H PRO 200 n 192 PRO 200 H SER 202 n 193 SER 202 H GLN 203 n 194 GLN 203 H THR 204 n 195 THR 204 H VAL 205 n 196 VAL 205 H THR 206 n 197 THR 206 H CYS 208 n 198 CYS 208 H SER 209 n 199 SER 209 H VAL 210 n 200 VAL 210 H ALA 211 n 201 ALA 211 H HIS 212 n 202 HIS 212 H PRO 213 n 203 PRO 213 H ALA 214 n 204 ALA 214 H SER 215 n 205 SER 215 H SER 216 n 206 SER 216 H THR 217 n 207 THR 217 H THR 218 n 208 THR 218 H VAL 219 n 209 VAL 219 H ASP 220 n 210 ASP 220 H LYS 221 n 211 LYS 221 H LYS 222 n 212 LYS 222 H LEU 223 n 213 LEU 223 H GLU 226 n 214 GLU 226 H PRO 227 n 215 PRO 227 H author_and_software_defined_assembly PISA 2 dimeric 3950 -46 18830 L ASP 151 A OD2 ASP 156 1_555 L ZN 600 C ZN ZN 1_555 L HIS 189 A ND1 HIS 194 1_555 108.4 L ASP 151 A OD2 ASP 156 1_555 L ZN 600 C ZN ZN 1_555 L IMD 902 D N1 IMD 1_555 102.6 L HIS 189 A ND1 HIS 194 1_555 L ZN 600 C ZN ZN 1_555 L IMD 902 D N1 IMD 1_555 119.5 L ASP 151 A OD2 ASP 156 1_555 L ZN 600 C ZN ZN 1_555 H ASP 220 B OD2 ASP 210 3_655 101.6 L HIS 189 A ND1 HIS 194 1_555 L ZN 600 C ZN ZN 1_555 H ASP 220 B OD2 ASP 210 3_655 108.8 L IMD 902 D N1 IMD 1_555 L ZN 600 C ZN ZN 1_555 H ASP 220 B OD2 ASP 210 3_655 114.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N LEU 104 A N LEU 109 L O GLY 84 A O GLY 89 L N SER 91 A N SER 96 L O TYR 32 A O TYR 37 L O LEU 37 A O LEU 42 L N LYS 45 A N LYS 50 L O TYR 49 A O TYR 54 L N ASN 53 A N ASN 58 H N GLN 3 B N GLN 3 H O SER 25 B O SER 25 H O VAL 18 B O VAL 18 H N LEU 82 B N LEU 83 H O GLN 81 B O GLN 82 H N THR 68 B N THR 69 H O GLY 8 B O GLY 8 H N THR 108 B N THR 111 H N TYR 102 B N TYR 105 H O ASN 94 B O ASN 98 H O ALA 93 B O ALA 97 H N GLN 35 B N GLN 35 H O LYS 38 B O LYS 38 H N GLU 46 B N GLU 46 H O ASP 52 B O ASP 52 H N SER 55 B N SER 56 L N THR 114 A N THR 119 L O ASN 137 A O ASN 142 L N ALA 130 A N ALA 135 L O LEU 181 A O LEU 186 L N ASN 145 A N ASN 150 L O THR 197 A O THR 202 L O ASN 190 A O ASN 195 L N ARG 211 A N ARG 216 H N SER 120 B N SER 123 H O LYS 145 B O LYS 146 H N LEU 184 B N LEU 177 H O GLN 179 B O GLN 174 H N THR 153 B N THR 154 H O ALA 211 B O ALA 201 H O VAL 205 B O VAL 196 H N LEU 223 B N LEU 213 1 L OG SER 10 A OG SER 10 1 Y 1 L NE ARG 24 A NE ARG 24 1 Y 1 L CZ ARG 24 A CZ ARG 24 1 Y 1 L NH1 ARG 24 A NH1 ARG 24 1 Y 1 L NH2 ARG 24 A NH2 ARG 24 1 Y 1 L CG LYS 45 A CG LYS 50 1 Y 1 L CD LYS 45 A CD LYS 50 1 Y 1 L CE LYS 45 A CE LYS 50 1 Y 1 L NZ LYS 45 A NZ LYS 50 1 Y 1 L NE ARG 77 A NE ARG 82 1 Y 1 L CZ ARG 77 A CZ ARG 82 1 Y 1 L NH1 ARG 77 A NH1 ARG 82 1 Y 1 L NH2 ARG 77 A NH2 ARG 82 1 Y 1 L CG ASN 145 A CG ASN 150 1 Y 1 L OD1 ASN 145 A OD1 ASN 150 1 Y 1 L ND2 ASN 145 A ND2 ASN 150 1 Y 1 L CG LYS 153 A CG LYS 158 1 Y 1 L CD LYS 153 A CD LYS 158 1 Y 1 L CE LYS 153 A CE LYS 158 1 Y 1 L NZ LYS 153 A NZ LYS 158 1 Y 1 L OG SER 162 A OG SER 167 1 Y 1 L CG TRP 163 A CG TRP 168 1 Y 1 L CD1 TRP 163 A CD1 TRP 168 1 Y 1 L CD2 TRP 163 A CD2 TRP 168 1 Y 1 L NE1 TRP 163 A NE1 TRP 168 1 Y 1 L CE2 TRP 163 A CE2 TRP 168 1 Y 1 L CE3 TRP 163 A CE3 TRP 168 1 Y 1 L CZ2 TRP 163 A CZ2 TRP 168 1 Y 1 L CZ3 TRP 163 A CZ3 TRP 168 1 Y 1 L CH2 TRP 163 A CH2 TRP 168 1 Y 1 L OG SER 201 A OG SER 206 1 Y 1 L OG1 THR 202 A OG1 THR 207 1 Y 1 L CG2 THR 202 A CG2 THR 207 1 Y 1 L CB SER 203 A CB SER 208 1 Y 1 L OG SER 203 A OG SER 208 1 Y 1 L CG LYS 207 A CG LYS 212 1 Y 1 L CD LYS 207 A CD LYS 212 1 Y 1 L CE LYS 207 A CE LYS 212 1 Y 1 L NZ LYS 207 A NZ LYS 212 1 Y 1 L CG ASN 210 A CG ASN 215 1 Y 1 L OD1 ASN 210 A OD1 ASN 215 1 Y 1 L ND2 ASN 210 A ND2 ASN 215 1 Y 1 H CG1 VAL 2 B CG1 VAL 2 1 Y 1 H CG2 VAL 2 B CG2 VAL 2 1 Y 1 H CG LYS 13 B CG LYS 13 1 Y 1 H CD LYS 13 B CD LYS 13 1 Y 1 H CE LYS 13 B CE LYS 13 1 Y 1 H NZ LYS 13 B NZ LYS 13 1 Y 1 H OG SER 17 B OG SER 17 1 Y 1 H OG1 THR 28 B OG1 THR 28 1 Y 1 H CG2 THR 28 B CG2 THR 28 1 Y 1 H CG ARG 40 B CG ARG 40 1 Y 1 H CD ARG 40 B CD ARG 40 1 Y 1 H NE ARG 40 B NE ARG 40 1 Y 1 H CZ ARG 40 B CZ ARG 40 1 Y 1 H NH1 ARG 40 B NH1 ARG 40 1 Y 1 H NH2 ARG 40 B NH2 ARG 40 1 Y 1 H CG GLN 61 B CG GLN 62 1 Y 1 H CD GLN 61 B CD GLN 62 1 Y 1 H OE1 GLN 61 B OE1 GLN 62 1 Y 1 H NE2 GLN 61 B NE2 GLN 62 1 Y 1 H CG LYS 64 B CG LYS 65 1 Y 1 H CD LYS 64 B CD LYS 65 1 Y 1 H CE LYS 64 B CE LYS 65 1 Y 1 H NZ LYS 64 B NZ LYS 65 1 Y 1 H CG LYS 115 B CG LYS 118 1 Y 1 H CD LYS 115 B CD LYS 118 1 Y 1 H CE LYS 115 B CE LYS 118 1 Y 1 H NZ LYS 115 B NZ LYS 118 1 Y 1 H OG1 THR 133 B OG1 THR 134 1 Y 1 H CG2 THR 133 B CG2 THR 134 1 Y 1 H OG1 THR 134 B OG1 THR 135 1 Y 1 H CG2 THR 134 B CG2 THR 135 1 Y 1 H CB SER 180 B CB SER 175 1 Y 1 H OG SER 180 B OG SER 175 1 Y 1 H OG SER 188 B OG SER 181 1 Y 1 H OG1 THR 204 B OG1 THR 195 1 Y 1 H CG2 THR 204 B CG2 THR 195 1 Y 1 L ASN 212 A ASN 217 1 Y 1 L GLU 213 A GLU 218 1 Y 1 L CYS 214 A CYS 219 1 Y 1 H GLN 1 B GLN 1 1 Y 1 H THR 73 B THR 74 1 Y 1 H SER 74 B SER 75 1 Y 1 H SER 75 B SER 76 1 Y 1 H CYS 130 B CYS 131 1 Y 1 H GLY 131 B GLY 132 1 Y 1 H ASP 132 B ASP 133 1 Y 1 9.42 1.50 119.30 128.72 H H H C N CA ARG PRO PRO 40 41 41 Y 1 L PRO 40 -37.40 128.33 1 L VAL 51 73.20 -47.61 1 L SER 67 -171.91 142.16 1 L ASN 190 -103.44 -70.16 1 L THR 202 85.08 -49.57 1 H TYR 27 -170.53 -177.98 1 H THR 30 -58.48 10.39 1 H SER 31 -110.22 -75.32 1 H PRO 41 -14.60 -60.42 1 H GLN 43 -24.20 121.48 1 H ASP 54 -124.69 -50.99 1 H SER 55 98.10 14.41 1 H THR 134 55.12 153.96 1 H SER 151 -45.50 101.42 1 H SER 180 75.80 -120.83 RESIDUES ARG 24 AND ARG 77 WERE REFINED AS LYS. 0.195 0.195 2.3 1 2.3 103 3306 33 0 3170 0.010 1.8 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG JEL 103 FAB FRAGMENT COMPLEXED WITH INOSINE-5'-DIPHOSPHATE PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N L GLU 79 A GLU 84 HELX_P L LEU 83 A LEU 88 5 1 5 L SER 121 A SER 126 HELX_P L SER 127 A SER 132 1 2 7 L LYS 183 A LYS 188 HELX_P L HIS 189 A HIS 194 1 3 7 H GLN 61 B GLN 62 HELX_P H LYS 64 B LYS 65 5 4 4 H THR 83 B THR 87 HELX_P H SER 87 B SER 91 5 5 5 H SER 163 B SER 159 HELX_P H SER 165 B SER 161 5 6 3 H SER 196 B SER 189 HELX_P H TRP 199 B TRP 191 5 7 3 H PRO 213 B PRO 203 HELX_P H SER 216 B SER 206 5 8 4 disulf 2.019 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 93 1_555 disulf 2.022 L CYS 134 A SG CYS 139 1_555 L CYS 194 A SG CYS 199 1_555 disulf 2.023 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 96 1_555 disulf 2.010 H CYS 142 B SG CYS 143 1_555 H CYS 208 B SG CYS 198 1_555 metalc 1.869 L ZN 600 C ZN ZN 1_555 L ASP 151 A OD2 ASP 156 1_555 metalc 1.927 L ZN 600 C ZN ZN 1_555 L HIS 189 A ND1 HIS 194 1_555 metalc 1.755 L ZN 600 C ZN ZN 1_555 L IMD 902 D N1 IMD 1_555 metalc 1.771 L ZN 600 C ZN ZN 1_555 H ASP 220 B OD2 ASP 210 3_655 IMMUNOGLOBULIN IMMUNOGLOBULIN L THR 7 A THR 7 1 L PRO 8 A PRO 8 0.23 L VAL 94 A VAL 99 1 L PRO 95 A PRO 100 0.44 L TYR 140 A TYR 145 1 L PRO 141 A PRO 146 -0.06 H PHE 148 B PHE 149 1 H PRO 149 B PRO 150 0.12 H TRP 199 B TRP 191 1 H PRO 200 B PRO 192 0.72 PC4203 PIR 1 1 PC4203 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC AAA51630 GB 2 1 387221 EVQLQQSGAELVRPGTSVKMSCKAAGYTFTNYWIGWVKERPGHGLEWIGDIYPGGGFTNYNENFKGKATLTADTSSSTAY MQLSSLTSEDSAIYHCARGIYYNSSPYFDSWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTSGCLVKGYFPEPVTV TWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHKCP APNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQH QDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYTLPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN YKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKNYYLKKTISRSPGK 1 219 1MRD 1 214 PC4203 L 1 1 219 2 220 1MRD 2 227 387221 H 2 2 215 1 LEU CONFLICT VAL 3 1MRD L PC4203 PIR 3 3 1 ILE CONFLICT LEU 27 1MRD B L PC4203 PIR 29 29 1 THR CONFLICT SER 27 1MRD A L PC4203 PIR 32 28 1 GLU CONFLICT HIS 34 1MRD L PC4203 PIR 39 39 1 TYR CONFLICT PHE 87 1MRD L PC4203 PIR 92 92 1 PHE CONFLICT SER 89 1MRD L PC4203 PIR 94 94 1 GLY CONFLICT SER 91 1MRD L PC4203 PIR 96 96 1 SER CONFLICT THR 92 1MRD L PC4203 PIR 97 97 1 SER CONFLICT LYS 153 1MRD L PC4203 PIR 158 158 1 ASP CONFLICT ASN 167 1MRD L PC4203 PIR 172 172 2 ARG CONFLICT LYS 13 1MRD H 387221 GB 13 13 2 THR CONFLICT ALA 16 1MRD H 387221 GB 16 16 2 MET CONFLICT LEU 20 1MRD H 387221 GB 20 20 2 ALA CONFLICT SER 25 1MRD H 387221 GB 25 25 2 ASN CONFLICT SER 31 1MRD H 387221 GB 31 31 2 ILE CONFLICT MET 34 1MRD H 387221 GB 34 34 2 GLY CONFLICT GLN 35 1MRD H 387221 GB 35 35 2 GLU CONFLICT GLN 39 1MRD H 387221 GB 39 39 2 HIS CONFLICT GLN 43 1MRD H 387221 GB 43 43 2 ASP CONFLICT GLU 50 1MRD H 387221 GB 50 50 2 TYR CONFLICT ASP 52 1MRD H 387221 GB 52 52 2 GLY CONFLICT SER 53 1MRD H 387221 GB 54 54 2 GLY CONFLICT ASP 54 1MRD H 387221 GB 55 55 2 GLY CONFLICT SER 55 1MRD H 387221 GB 56 56 2 PHE CONFLICT TYR 56 1MRD H 387221 GB 57 57 2 GLU CONFLICT GLN 61 1MRD H 387221 GB 62 62 2 ASN CONFLICT LYS 62 1MRD H 387221 GB 63 63 2 ALA CONFLICT VAL 71 1MRD H 387221 GB 72 72 2 ILE CONFLICT VAL 89 1MRD H 387221 GB 93 93 2 HIS CONFLICT TYR 91 1MRD H 387221 GB 95 95 2 ARG DELETION 1MRD H 387221 GB 98 2 GLY DELETION 1MRD H 387221 GB 99 2 ILE DELETION 1MRD H 387221 GB 100 2 TYR DELETION 1MRD H 387221 GB 101 2 TYR DELETION 1MRD H 387221 GB 102 2 SER CONFLICT LEU 95 1MRD H 387221 GB 104 99 2 SER CONFLICT ARG 96 1MRD H 387221 GB 105 100 2 PRO CONFLICT GLY 97 1MRD H 387221 GB 106 101 2 SER CONFLICT TYR 102 1MRD H 387221 GB 110 105 2 SER CONFLICT LEU 140 1MRD H 387221 GB 146 141 2 PRO CONFLICT SER 151 1MRD H 387221 GB 157 152 4 6 4 6 4 3 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L VAL 2 A VAL 2 L THR 7 A THR 7 L ASP 17 A ASP 17 L SER 25 A SER 25 L ASP 70 A ASP 75 L ILE 75 A ILE 80 L PHE 62 A PHE 67 L SER 67 A SER 72 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 97 A THR 102 L LYS 107 A LYS 112 L GLY 84 A GLY 89 L SER 91 A SER 96 L TYR 32 A TYR 37 L GLN 38 A GLN 43 L GLN 42 A GLN 47 L LYS 50 A LYS 55 L ASN 53 A ASN 58 L SER 56 A SER 61 H GLN 3 B GLN 3 H SER 7 B SER 7 H ALA 16 B ALA 16 H SER 25 B SER 25 H THR 77 B THR 78 H SER 82 B SER 84 A H ALA 67 B ALA 68 H ASP 72 B ASP 73 H GLY 8 B GLY 8 H PRO 14 B PRO 14 H TYR 102 B TYR 105 H SER 112 B SER 115 H ALA 88 B ALA 92 H ASN 94 B ASN 98 H TYR 32 B TYR 32 H ARG 40 B ARG 40 H LEU 45 B LEU 45 H ASP 52 B ASP 52 H SER 55 B SER 56 H ASN 60 B ASN 61 L THR 114 A THR 119 L SER 121 A SER 126 L GLY 129 A GLY 134 L TYR 140 A TYR 145 L THR 172 A THR 177 L THR 182 A THR 187 L VAL 159 A VAL 164 L ASN 167 A ASN 172 L ASP 143 A ASP 148 L ASP 151 A ASP 156 L ASN 190 A ASN 195 L HIS 198 A HIS 203 L SER 203 A SER 208 L ARG 211 A ARG 216 H SER 120 B SER 123 H LEU 124 B LEU 127 H SER 137 B SER 138 H GLY 146 B GLY 147 H LEU 184 B LEU 177 H PRO 194 B PRO 187 H VAL 171 B VAL 166 H GLN 179 B GLN 174 H THR 153 B THR 154 H ASN 162 B ASN 158 H VAL 205 B VAL 196 H HIS 212 B HIS 202 H THR 217 B THR 207 H LEU 223 B LEU 213 BINDING SITE FOR RESIDUE ZN L 600 Software 4 BINDING SITE FOR RESIDUE IMD L 902 Software 8 BINDING SITE FOR RESIDUE IDP L 901 Software 11 H ASP 220 B ASP 210 4 3_655 L ASP 151 A ASP 156 4 1_555 L HIS 189 A HIS 194 4 1_555 L IMD 902 D IMD 4 1_555 H SER 163 B SER 159 8 3_655 H SER 209 B SER 199 8 3_655 H THR 218 B THR 208 8 3_655 H ASP 220 B ASP 210 8 3_655 L ASP 151 A ASP 156 8 1_555 L ARG 188 A ARG 193 8 1_555 L HIS 189 A HIS 194 8 1_555 L ZN 600 C ZN 8 1_555 H ARG 96 B ARG 100 11 1_555 H HOH 685 G HOH 11 1_555 L ASN 28 A ASN 33 11 1_555 L ASN 30 A ASN 35 11 1_555 L TYR 32 A TYR 37 11 1_555 L LYS 50 A LYS 55 11 1_555 L GLU 79 A GLU 84 11 4_456 L GLU 81 A GLU 86 11 4_456 L SER 91 A SER 96 11 1_555 L LYS 169 A LYS 174 11 4_456 L HOH 690 F HOH 11 1_555 19 P 21 21 21