0.017396 0.000000 0.000000 0.000000 0.011587 0.000000 0.000000 0.000000 0.021673 0.00000 0.00000 0.00000 Vega, S. Kang, L.-W. Velazquez-Campoy, A. Kiso, Y. Amzel, L.M. Freire, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.484 86.302 46.140 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C32 H37 N3 O5 S 575.718 (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide JE-2147; AG1776; KNI-764 peptide-like C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H Y 183 N C Y 184 N C Y 185 N C Y 186 N C Y 187 N C Y 188 N C N 189 N C N 190 N C N 191 N O N 192 N O N 193 N C N 194 N N N 195 N O N 196 S C Y 197 N C N 198 N C Y 199 N C N 200 S C N 201 N O Y 202 N C Y 203 N C Y 204 N C Y 205 N C N 206 N C N 207 N N N 208 N O N 209 R C N 210 N C N 211 N C N 212 N C N 213 N C N 214 N S N 215 N N N 216 N C Y 217 N C Y 218 N C Y 219 N C Y 220 N C Y 221 N C Y 222 N C N 223 N C N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N N N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N S N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 R C N 387 N O N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N N Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N doub Y 175 N sing N 176 N sing Y 177 N sing N 178 N sing Y 179 N doub N 180 N sing Y 181 N sing N 182 N sing Y 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing Y 199 N doub Y 200 N sing Y 201 N sing N 202 N sing Y 203 N doub N 204 N sing Y 205 N sing N 206 N sing Y 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing Y 240 N doub Y 241 N sing Y 242 N sing N 243 N sing Y 244 N doub N 245 N sing Y 246 N sing N 247 N sing Y 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N sing Y 335 N doub N 336 N sing Y 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing Y 426 N doub Y 427 N sing Y 428 N sing N 429 N sing Y 430 N doub N 431 N sing Y 432 N doub N 433 N sing Y 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing US Proteins PSFGEY 0867 0887-3585 55 594 602 10.1002/prot.20069 15103623 A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease. 2004 10.2210/pdb1msn/pdb pdb_00001msn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 mirrors IMAGE PLATE 2001-04-20 RIGAKU RAXIS IV Ni-filter SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU RU200 10838.824 POL polyprotein 3.4.23.16 HIV protease (residues 69-167) V82F, I84V 2 man polymer 575.718 (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide 1 syn non-polymer 18.015 water 121 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PFNVIGRNLLTQIGCTLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PFNVIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli plasmid 1 2.64 53.38 VAPOR DIFFUSION, HANGING DROP 7.0 MOPS, Sodium chloride, sodium azide, DTT, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Structure summary Data collection Refinement description 1 0 2003-11-04 1 1 2008-04-28 1 2 2011-07-13 1 3 2012-12-12 1 4 2021-10-27 1 5 2024-02-14 _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Structure of HIV protease(WT) complexed with KNI- 577 Structure of HIV protease (Mutant V82F, I84V) complexed with KNI-577 The HIV protease ( wild type) complexed with KNI-764 (a inhibitor) RCSB Y RCSB 2002-09-19 REL JE2 (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide HOH water 1HPX PDB ENTRY 1HPX PDB experimental model Enzyme inhibitor KNI-764 Peptide-like 764 1 2 JE2 JE2 1001 B HOH 4 3 HOH HOH 100 A HOH 5 3 HOH HOH 101 A HOH 6 3 HOH HOH 102 A HOH 7 3 HOH HOH 103 A HOH 13 3 HOH HOH 104 A HOH 16 3 HOH HOH 105 A HOH 17 3 HOH HOH 106 A HOH 20 3 HOH HOH 107 A HOH 21 3 HOH HOH 108 A HOH 22 3 HOH HOH 109 A HOH 23 3 HOH HOH 110 A HOH 24 3 HOH HOH 111 A HOH 25 3 HOH HOH 112 A HOH 26 3 HOH HOH 113 A HOH 31 3 HOH HOH 114 A HOH 32 3 HOH HOH 115 A HOH 36 3 HOH HOH 116 A HOH 37 3 HOH HOH 117 A HOH 39 3 HOH HOH 118 A HOH 44 3 HOH HOH 119 A HOH 45 3 HOH HOH 120 A HOH 47 3 HOH HOH 121 A HOH 51 3 HOH HOH 122 A HOH 53 3 HOH HOH 123 A HOH 56 3 HOH HOH 124 A HOH 59 3 HOH HOH 125 A HOH 61 3 HOH HOH 126 A HOH 64 3 HOH HOH 127 A HOH 66 3 HOH HOH 128 A HOH 67 3 HOH HOH 129 A HOH 68 3 HOH HOH 130 A HOH 71 3 HOH HOH 131 A HOH 72 3 HOH HOH 132 A HOH 75 3 HOH HOH 133 A HOH 78 3 HOH HOH 134 A HOH 81 3 HOH HOH 135 A HOH 86 3 HOH HOH 136 A HOH 91 3 HOH HOH 137 A HOH 92 3 HOH HOH 138 A HOH 93 3 HOH HOH 139 A HOH 96 3 HOH HOH 140 A HOH 98 3 HOH HOH 141 A HOH 101 3 HOH HOH 142 A HOH 102 3 HOH HOH 143 A HOH 103 3 HOH HOH 144 A HOH 104 3 HOH HOH 145 A HOH 107 3 HOH HOH 146 A HOH 109 3 HOH HOH 147 A HOH 112 3 HOH HOH 148 A HOH 113 3 HOH HOH 149 A HOH 114 3 HOH HOH 150 A HOH 115 3 HOH HOH 151 A HOH 116 3 HOH HOH 152 A HOH 117 3 HOH HOH 153 A HOH 119 3 HOH HOH 154 A HOH 1 3 HOH HOH 1002 B HOH 2 3 HOH HOH 1003 B HOH 3 3 HOH HOH 1004 B HOH 8 3 HOH HOH 1005 B HOH 9 3 HOH HOH 1006 B HOH 10 3 HOH HOH 1007 B HOH 11 3 HOH HOH 1008 B HOH 12 3 HOH HOH 1009 B HOH 14 3 HOH HOH 1010 B HOH 15 3 HOH HOH 1011 B HOH 18 3 HOH HOH 1012 B HOH 19 3 HOH HOH 1013 B HOH 27 3 HOH HOH 1014 B HOH 28 3 HOH HOH 1015 B HOH 29 3 HOH HOH 1016 B HOH 30 3 HOH HOH 1017 B HOH 33 3 HOH HOH 1018 B HOH 34 3 HOH HOH 1019 B HOH 35 3 HOH HOH 1020 B HOH 38 3 HOH HOH 1021 B HOH 40 3 HOH HOH 1022 B HOH 41 3 HOH HOH 1023 B HOH 42 3 HOH HOH 1024 B HOH 43 3 HOH HOH 1025 B HOH 46 3 HOH HOH 1026 B HOH 48 3 HOH HOH 1027 B HOH 49 3 HOH HOH 1028 B HOH 50 3 HOH HOH 1029 B HOH 52 3 HOH HOH 1030 B HOH 54 3 HOH HOH 1031 B HOH 55 3 HOH HOH 1032 B HOH 57 3 HOH HOH 1033 B HOH 58 3 HOH HOH 1034 B HOH 60 3 HOH HOH 1035 B HOH 62 3 HOH HOH 1036 B HOH 65 3 HOH HOH 1037 B HOH 69 3 HOH HOH 1038 B HOH 70 3 HOH HOH 1039 B HOH 73 3 HOH HOH 1040 B HOH 74 3 HOH HOH 1041 B HOH 76 3 HOH HOH 1042 B HOH 77 3 HOH HOH 1043 B HOH 79 3 HOH HOH 1044 B HOH 80 3 HOH HOH 1045 B HOH 82 3 HOH HOH 1046 B HOH 83 3 HOH HOH 1047 B HOH 84 3 HOH HOH 1048 B HOH 87 3 HOH HOH 1049 B HOH 88 3 HOH HOH 1050 B HOH 89 3 HOH HOH 1051 B HOH 90 3 HOH HOH 1052 B HOH 94 3 HOH HOH 1053 B HOH 95 3 HOH HOH 1054 B HOH 97 3 HOH HOH 1055 B HOH 99 3 HOH HOH 1056 B HOH 100 3 HOH HOH 1057 B HOH 105 3 HOH HOH 1058 B HOH 106 3 HOH HOH 1059 B HOH 108 3 HOH HOH 1060 B HOH 110 3 HOH HOH 1061 B HOH 111 3 HOH HOH 1062 B HOH 118 3 HOH HOH 1063 B HOH 120 3 HOH HOH 1064 B HOH 121 3 HOH HOH 1065 B HOH 122 3 HOH HOH 1066 B HOH 123 3 HOH HOH 1067 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A PHE 82 n 82 PHE 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B ILE 33 n 33 ILE 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ILE 63 n 63 ILE 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B PHE 82 n 82 PHE 82 B ASN 83 n 83 ASN 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5020 -31 9460 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B N ASN 98 B N ASN 98 A O THR 96 A O THR 96 A O LEU 97 A O LEU 97 B N ILE 3 B N ILE 3 A O GLY 49 A O GLY 49 A N GLY 52 A N GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A O LEU 23 A O LEU 23 A N ILE 85 A N ILE 85 A N VAL 84 A N VAL 84 A O VAL 32 A O VAL 32 A N THR 31 A N THR 31 A O THR 74 A O THR 74 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 B N ILE 47 B N ILE 47 B O ILE 54 B O ILE 54 B O GLU 65 B O GLU 65 B N LYS 14 B N LYS 14 B N ILE 15 B N ILE 15 B O GLN 18 B O GLN 18 B O LEU 23 B O LEU 23 B N ILE 85 B N ILE 85 B N VAL 84 B N VAL 84 B O VAL 32 B O VAL 32 B N ILE 33 B N ILE 33 B O LEU 76 B O LEU 76 B N VAL 77 B N VAL 77 B O ARG 57 B O ARG 57 1 9.62 1.50 119.30 128.92 B B B C N CA LEU PRO PRO 38 39 39 Y 0.2496 0.2215 2.0 30 1587 15875 15875 random 1 THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1HPX Engh & Huber 2.0 30 121 1684 41 0 1522 0.0066 1.278 1.319 1.988 2.0 30 1MSN 16132 15875 0 0 0.078 1 14.6 98.5 2.0 2.07 0.21 1 95.9 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS The HIV protease (mutant Q7K L33I L63I V82F I84V) complexed with KNI-764 (an inhibitor) 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 3 6 HYDROLASE/HYDROLASE INHIBITOR HIV, KNI-764, protease, drug target, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex POL_HV1BR UNP 1 69 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1MSN 1 99 P03367 A 1 1 99 69 167 1MSN 1 99 P03367 B 1 1 99 1 GLN engineered mutation LYS 7 1MSN A P03367 UNP 75 7 1 LEU engineered mutation ILE 33 1MSN A P03367 UNP 101 33 1 LEU engineered mutation ILE 63 1MSN A P03367 UNP 131 63 1 VAL engineered mutation PHE 82 1MSN A P03367 UNP 150 82 1 ILE engineered mutation VAL 84 1MSN A P03367 UNP 152 84 2 GLN engineered mutation LYS 7 1MSN B P03367 UNP 75 7 2 LEU engineered mutation ILE 33 1MSN B P03367 UNP 101 33 2 LEU engineered mutation ILE 63 1MSN B P03367 UNP 131 63 2 VAL engineered mutation PHE 82 1MSN B P03367 UNP 150 82 2 ILE engineered mutation VAL 84 1MSN B P03367 UNP 152 84 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B THR 4 B THR 4 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A THR 31 A THR 31 A ILE 33 A ILE 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 48 B GLY 48 B PHE 53 B PHE 53 B ILE 66 B ILE 66 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B VAL 84 B VAL 84 B ILE 85 B ILE 85 B VAL 32 B VAL 32 B ILE 33 B ILE 33 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B PHE 53 B PHE 53 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE JE2 B 1001 B JE2 1001 Software 20 A ASP 25 A ASP 25 20 1_555 A GLY 27 A GLY 27 20 1_555 A ALA 28 A ALA 28 20 1_555 A ASP 30 A ASP 30 20 1_555 A VAL 32 A VAL 32 20 1_555 A ILE 47 A ILE 47 20 1_555 A GLY 48 A GLY 48 20 1_555 A GLY 49 A GLY 49 20 1_555 A PRO 81 A PRO 81 20 1_555 A PHE 82 A PHE 82 20 1_555 A HOH 109 D HOH 20 1_555 B LEU 23 B LEU 23 20 1_555 B ASP 25 B ASP 25 20 1_555 B GLY 27 B GLY 27 20 1_555 B ALA 28 B ALA 28 20 1_555 B ASP 29 B ASP 29 20 1_555 B ASP 30 B ASP 30 20 1_555 B GLY 48 B GLY 48 20 1_555 B ILE 50 B ILE 50 20 1_555 B HOH 1008 E HOH 20 1_555 18 P 21 21 2