1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lebars, I.
Yoshizawa, S.
Stenholm, A.R.
Guittet, E.
Douthwaite, S.
Fourmy, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
Embo J.
EMJODG
0897
0261-4189
22
183
192
10.1093/emboj/cdg022
12514124
Structure of 23S rRNA hairpin 35 and its interaction with the tylosin-resistance methyltransferase RlmAII
2003
10.2210/pdb1mt4/pdb
pdb_00001mt4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7732.663
23S ribosomal Hairpin 35
Hairpin 35 from E. coli
1
syn
polymer
no
no
GGCGUAACGUUGAAAAGUUACGCC
GGCGUAACGUUGAAAAGUUACGCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-7.199
1
19
A
1
A
24
-3.089
A_G1:C24_A
1
-21.714
-0.883
0.248
-0.281
-2.910
1
19
A
2
A
23
-3.667
A_G2:C23_A
2
-19.918
-0.690
0.421
-0.203
1.195
1
19
A
3
A
22
-3.171
A_C3:G22_A
3
-22.349
0.813
0.393
-0.280
0.321
1
19
A
4
A
21
-2.715
A_G4:C21_A
4
-25.808
-0.898
0.521
-0.335
0.523
1
20
A
5
A
20
-4.596
A_U5:A20_A
5
-23.301
0.212
0.483
-0.077
7.798
1
20
A
6
A
19
-1.445
A_A6:U19_A
6
-16.572
-0.244
0.554
-0.063
-3.186
1
20
A
7
A
18
-0.404
A_A7:U18_A
7
-31.599
-0.055
-0.483
-0.060
1.570
1
19
A
8
A
17
2.166
A_C8:G17_A
8
-24.026
0.082
-0.471
-0.028
0.891
9
11
A
9
A
16
-4.837
A_G9:A16_A
9
-10.552
6.716
-0.452
-4.104
-17.729
3
24
A
10
A
15
-50.365
A_U10:A15_A
10
9.732
1.936
-2.490
-3.647
2.773
33.539
A
A
1
2
7.480
A
A
24
23
2.968
4.300
-0.264
-1.479
AA_G1G2:C23C24_AA
1
-2.830
4.922
33.153
-3.186
0.048
3.008
38.978
A
A
2
3
2.167
A
A
23
22
3.057
1.445
0.057
-1.327
AA_G2C3:G22C23_AA
2
1.189
-1.783
38.935
-2.150
0.048
1.508
33.006
A
A
3
4
31.910
A
A
22
21
2.704
17.272
0.146
-1.587
AA_C3G4:C21G22_AA
3
-0.194
0.358
28.234
-4.838
-0.279
3.121
38.642
A
A
4
5
-0.555
A
A
21
20
3.106
-0.367
0.129
-1.535
AA_G4U5:A20C21_AA
4
0.496
-0.750
38.637
-2.277
-0.136
1.757
31.984
A
A
5
6
23.858
A
A
20
19
2.658
12.790
0.007
-1.752
AA_U5A6:U19A20_AA
5
-1.640
3.059
29.332
-4.812
-0.223
2.869
36.654
A
A
6
7
17.604
A
A
19
18
3.469
10.891
-0.351
-1.362
AA_A6A7:U18U19_AA
6
4.184
-6.763
34.808
-3.652
1.129
2.848
32.828
A
A
7
8
6.886
A
A
18
17
3.009
3.881
0.069
-1.167
AA_A7C8:G17U18_AA
7
-1.547
2.744
32.568
-2.663
-0.360
3.573
62.852
A
A
8
9
3.010
A
A
17
16
3.589
3.137
0.401
-0.494
AA_C8G9:A16G17_AA
8
1.747
-1.676
62.759
-0.628
-0.298
-1.435
36.784
A
A
9
10
7.966
A
A
16
15
4.631
3.820
-2.771
-1.880
AA_G9U10:A15A16_AA
9
34.994
-72.976
10.847
-3.383
8.088
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-01-14
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-09-20
REL
SYNTHETIC-T7 RNA TRANSCRIPT; sequence from Escherichia coli
sample
structures with the lowest energy
115
17
HSQC
TOCSY, 3D NOESY-HMQC, 3D HCCH- TOCSY, HP COSY, HSQC, 3D HCP
10mM phosphate
6.4
ambient
303
K
simulated annealing
1
lowest energy
1mM RNA U-15N; 10mM phosphate buffer; 90% H2O, 10% D2O
90% H2O/10% D2O
1mM RNA 15N-13C; 10mM phosphate buffer; 100% D2O
100% D2O
processing
XwinNMR
processing
AURELIA
structure solution
Discover
refinement
Discover
800
Bruker
DRX
600
Bruker
DRX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
C
8
n
8
C
8
A
G
9
n
9
G
9
A
U
10
n
10
U
10
A
U
11
n
11
U
11
A
G
12
n
12
G
12
A
A
13
n
13
A
13
A
A
14
n
14
A
14
A
A
15
n
15
A
15
A
A
16
n
16
A
16
A
G
17
n
17
G
17
A
U
18
n
18
U
18
A
U
19
n
19
U
19
A
A
20
n
20
A
20
A
C
21
n
21
C
21
A
G
22
n
22
G
22
A
C
23
n
23
C
23
A
C
24
n
24
C
24
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
6
0.080
SIDE CHAIN
1
A
G
9
0.076
SIDE CHAIN
1
A
U
10
0.074
SIDE CHAIN
1
A
A
15
0.071
SIDE CHAIN
1
A
A
20
0.053
SIDE CHAIN
1
A
G
22
0.074
SIDE CHAIN
2
A
U
10
0.070
SIDE CHAIN
2
A
A
14
0.068
SIDE CHAIN
2
A
G
22
0.074
SIDE CHAIN
3
A
G
22
0.082
SIDE CHAIN
4
A
A
6
0.063
SIDE CHAIN
4
A
G
9
0.081
SIDE CHAIN
4
A
G
22
0.080
SIDE CHAIN
5
A
G
4
0.071
SIDE CHAIN
5
A
A
6
0.058
SIDE CHAIN
5
A
G
9
0.085
SIDE CHAIN
5
A
G
22
0.077
SIDE CHAIN
6
A
G
9
0.076
SIDE CHAIN
6
A
A
14
0.066
SIDE CHAIN
6
A
G
22
0.077
SIDE CHAIN
7
A
G
4
0.065
SIDE CHAIN
7
A
A
6
0.101
SIDE CHAIN
7
A
A
16
0.106
SIDE CHAIN
7
A
G
22
0.090
SIDE CHAIN
8
A
G
4
0.069
SIDE CHAIN
8
A
A
16
0.084
SIDE CHAIN
8
A
G
22
0.079
SIDE CHAIN
9
A
G
4
0.067
SIDE CHAIN
9
A
A
15
0.055
SIDE CHAIN
9
A
G
17
0.065
SIDE CHAIN
9
A
G
22
0.076
SIDE CHAIN
10
A
G
4
0.068
SIDE CHAIN
10
A
A
13
0.052
SIDE CHAIN
10
A
G
22
0.067
SIDE CHAIN
11
A
G
4
0.064
SIDE CHAIN
11
A
A
6
0.060
SIDE CHAIN
11
A
A
7
0.052
SIDE CHAIN
11
A
G
17
0.078
SIDE CHAIN
11
A
G
22
0.075
SIDE CHAIN
12
A
A
6
0.064
SIDE CHAIN
12
A
A
16
0.071
SIDE CHAIN
12
A
G
22
0.070
SIDE CHAIN
13
A
A
16
0.052
SIDE CHAIN
13
A
C
23
0.070
SIDE CHAIN
14
A
G
4
0.062
SIDE CHAIN
14
A
A
6
0.066
SIDE CHAIN
14
A
G
12
0.078
SIDE CHAIN
14
A
A
13
0.090
SIDE CHAIN
14
A
A
16
0.085
SIDE CHAIN
14
A
G
22
0.074
SIDE CHAIN
15
A
G
4
0.074
SIDE CHAIN
15
A
A
6
0.077
SIDE CHAIN
15
A
A
7
0.054
SIDE CHAIN
15
A
G
9
0.082
SIDE CHAIN
15
A
U
11
0.091
SIDE CHAIN
15
A
A
20
0.062
SIDE CHAIN
15
A
G
22
0.080
SIDE CHAIN
16
A
A
6
0.058
SIDE CHAIN
16
A
A
15
0.089
SIDE CHAIN
16
A
A
20
0.059
SIDE CHAIN
16
A
G
22
0.084
SIDE CHAIN
17
A
G
4
0.068
SIDE CHAIN
17
A
A
6
0.064
SIDE CHAIN
17
A
G
9
0.082
SIDE CHAIN
17
A
U
10
0.079
SIDE CHAIN
17
A
A
15
0.062
SIDE CHAIN
17
A
G
22
0.079
SIDE CHAIN
1
4.44
0.70
108.50
112.94
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
1
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
1
4.25
0.70
108.50
112.75
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
1
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
1
6.24
0.70
108.50
114.74
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
1
6.28
0.70
108.50
114.78
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
1
4.48
0.70
108.50
112.98
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
1
4.24
0.70
108.50
112.74
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
1
4.74
0.70
108.50
113.24
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
2
4.68
0.70
108.50
113.18
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
2
7.16
0.70
108.50
115.66
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
2
5.52
0.70
108.50
114.02
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
2
5.07
0.70
108.50
113.57
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
2
5.34
0.70
108.50
113.84
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
2
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
2
4.35
0.70
108.50
112.85
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
2
4.75
0.70
108.50
113.25
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
3
4.38
0.70
108.50
112.88
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
3
4.82
0.70
108.50
113.32
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
3
4.86
0.70
108.50
113.36
A
A
A
O4'
C1'
N1
U
U
U
10
10
10
N
3
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
3
5.37
0.70
108.50
113.87
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
3
6.81
0.70
108.50
115.31
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
3
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
3
4.88
0.70
108.50
113.38
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
3
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
3
4.64
0.70
108.50
113.14
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
4
4.30
0.70
108.50
112.80
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
4
4.26
0.70
108.50
112.76
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
4
4.45
0.70
108.50
112.95
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
4
4.95
0.70
108.50
113.45
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
4
5.18
0.70
108.50
113.68
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
4
7.17
0.70
108.50
115.67
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
4
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
4
4.27
0.70
108.50
112.77
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
4
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
5
4.64
0.70
108.50
113.14
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
5
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
5
5.10
0.70
108.50
113.60
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
5
4.84
0.70
108.50
113.34
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
5
5.76
0.70
108.50
114.26
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
5
5.50
0.70
108.50
114.00
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
5
4.74
0.70
108.50
113.24
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
5
4.28
0.70
108.50
112.78
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
5
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
6
4.29
0.70
108.50
112.79
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
6
5.24
0.70
108.50
113.74
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
6
4.66
0.70
108.50
113.16
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
6
5.03
0.70
108.50
113.53
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
6
7.00
0.70
108.50
115.50
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
6
5.01
0.70
108.50
113.51
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
6
4.27
0.70
108.50
112.77
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
6
4.90
0.70
108.50
113.40
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
7
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
7
4.88
0.70
108.50
113.38
A
A
A
O4'
C1'
N9
A
A
A
7
7
7
N
7
5.48
0.70
108.50
113.98
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
7
4.40
0.70
108.50
112.90
A
A
A
O4'
C1'
N1
U
U
U
10
10
10
N
7
4.80
0.70
108.50
113.30
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
7
7.79
1.20
119.70
127.49
A
A
A
C3'
O3'
P
G
G
A
12
12
13
Y
7
5.58
0.70
108.50
114.08
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
7
5.32
0.70
108.50
113.82
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
7
7.61
0.70
108.50
116.11
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
7
5.52
0.70
108.50
114.02
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
7
5.25
0.70
108.50
113.75
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
7
4.61
0.70
108.50
113.11
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
7
4.62
0.70
108.50
113.12
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
8
4.36
0.70
108.50
112.86
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
8
5.56
0.70
108.50
114.06
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
8
5.62
0.70
108.50
114.12
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
8
5.29
0.70
108.50
113.79
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
8
4.87
0.70
108.50
113.37
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
8
5.09
0.70
108.50
113.59
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
8
7.32
0.70
108.50
115.82
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
8
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
8
4.25
0.70
108.50
112.75
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
8
4.28
0.70
108.50
112.78
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
8
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
9
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
9
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
9
4.24
0.70
108.50
112.74
A
A
A
O4'
C1'
N1
U
U
U
10
10
10
N
9
4.53
0.70
108.50
113.03
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
9
5.21
0.70
108.50
113.71
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
9
5.06
0.70
108.50
113.56
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
9
4.56
0.70
108.50
113.06
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
9
4.37
0.70
108.50
112.87
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
9
4.61
0.70
108.50
113.11
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
10
4.62
0.70
108.50
113.12
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
10
5.33
0.70
108.50
113.83
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
10
5.69
0.70
108.50
114.19
A
A
A
O4'
C1'
N1
U
U
U
10
10
10
N
10
4.65
0.70
108.50
113.15
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
10
4.42
0.70
108.50
112.92
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
10
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
10
5.36
0.70
108.50
113.86
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
10
4.81
0.70
108.50
113.31
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
10
5.06
0.70
108.50
113.56
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
10
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
10
4.53
0.70
108.50
113.03
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
11
4.78
0.70
108.50
113.28
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
11
4.72
0.70
108.50
113.22
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
11
5.78
0.80
101.50
107.28
A
A
A
C3'
C2'
C1'
U
U
U
10
10
10
N
11
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
11
4.93
0.70
108.50
113.43
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
11
4.35
0.70
108.50
112.85
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
11
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
11
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
11
4.53
0.70
108.50
113.03
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
11
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
11
4.24
0.70
108.50
112.74
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
11
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
12
4.49
0.70
108.50
112.99
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
12
4.39
0.70
108.50
112.89
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
12
4.39
0.70
108.50
112.89
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
12
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
12
4.75
0.70
108.50
113.25
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
12
5.35
0.70
108.50
113.85
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
12
6.65
0.70
108.50
115.15
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
12
7.08
0.70
108.50
115.58
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
12
4.40
0.70
108.50
112.90
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
12
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
12
4.31
0.70
108.50
112.81
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
12
4.39
0.70
108.50
112.89
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
13
4.49
0.70
108.50
112.99
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
13
5.05
0.70
108.50
113.55
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
13
4.45
0.70
108.50
112.95
A
A
A
O4'
C1'
N1
U
U
U
11
11
11
N
13
5.33
0.70
108.50
113.83
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
13
4.87
0.70
108.50
113.37
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
13
4.68
0.70
108.50
113.18
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
13
5.82
0.70
108.50
114.32
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
13
8.11
0.70
108.50
116.61
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
13
4.34
0.70
108.50
112.84
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
13
5.26
0.70
108.50
113.76
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
13
4.77
0.70
108.50
113.27
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
13
4.56
0.70
108.50
113.06
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
14
4.72
0.70
108.50
113.22
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
14
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
14
5.65
0.70
108.50
114.15
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
14
6.16
0.70
108.50
114.66
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
14
6.21
0.70
108.50
114.71
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
14
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
14
9.01
0.70
108.50
117.51
A
A
A
O4'
C1'
N9
A
A
A
16
16
16
N
14
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
14
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
14
4.31
0.70
108.50
112.81
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
14
4.82
0.70
108.50
113.32
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
15
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
15
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
15
5.58
0.70
108.50
114.08
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
15
5.27
0.70
108.50
113.77
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
15
4.51
0.70
108.50
113.01
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
15
4.74
0.70
108.50
113.24
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
15
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
16
4.45
0.70
108.50
112.95
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
16
4.64
0.70
108.50
113.14
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
16
5.28
0.70
108.50
113.78
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
16
6.00
0.70
108.50
114.50
A
A
A
O4'
C1'
N1
U
U
U
10
10
10
N
16
5.07
0.70
108.50
113.57
A
A
A
O4'
C1'
N9
G
G
G
12
12
12
N
16
8.67
0.70
108.50
117.17
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
16
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N9
A
A
A
14
14
14
N
16
7.74
0.70
108.50
116.24
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
16
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
16
4.25
0.70
108.50
112.75
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
16
4.65
0.70
108.50
113.15
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
17
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
17
4.88
0.80
101.50
106.38
A
A
A
C3'
C2'
C1'
U
U
U
10
10
10
N
17
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N9
A
A
A
13
13
13
N
17
4.46
0.70
108.50
112.96
A
A
A
O4'
C1'
N9
A
A
A
15
15
15
N
17
4.30
0.70
108.50
112.80
A
A
A
O4'
C1'
N1
C
C
C
21
21
21
N
17
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N1
C
C
C
23
23
23
N
Structure of 23S ribosomal RNA hairpin 35
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
24
A
N4
C
24
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
23
A
N3
C
23
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
23
A
O2
C
23
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
23
A
N4
C
23
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
22
A
N2
G
22
1_555
hydrog
G-A MISPAIR
A
G
4
A
O6
G
4
1_555
A
A
20
A
N6
A
20
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
21
A
N3
C
21
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
21
A
O2
C
21
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
21
A
N4
C
21
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
20
A
N1
A
20
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
20
A
N6
A
20
1_555
hydrog
WATSON-CRICK
A
A
6
A
N1
A
6
1_555
A
U
19
A
N3
U
19
1_555
hydrog
WATSON-CRICK
A
A
6
A
N6
A
6
1_555
A
U
19
A
O4
U
19
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
18
A
N3
U
18
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
18
A
O4
U
18
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
A
G
17
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
A
G
17
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
A
G
17
A
N2
G
17
1_555
hydrog
TYPE_11_PAIR
A
G
9
A
N2
G
9
1_555
A
A
16
A
N7
A
16
1_555
hydrog
TYPE_11_PAIR
A
G
9
A
N3
G
9
1_555
A
A
16
A
N6
A
16
1_555
hydrog
REVERSED HOOGSTEEN
A
U
10
A
N3
U
10
1_555
A
A
15
A
N7
A
15
1_555
hydrog
REVERSED HOOGSTEEN
A
U
10
A
O2
U
10
1_555
A
A
15
A
N6
A
15
1_555
RNA
RNA hairpin, ribosomal RNA, U-turn, RNA
1MT4
PDB
1
1MT4
1
24
1MT4
1
24
1MT4
A
1
1
24