0.014041 0.000000 0.002755 0.000000 0.013848 0.000000 0.000000 0.000000 0.013903 0.00000 0.00000 0.00000 Burgey, C.S. Robinson, K.A. Lyle, T.A. Sanderson, P.E. Lewis, S.D. Lucas, B.J. Krueger, J.A. Singh, R. Miller-Stein, C. White, R.B. Wong, B. Lyle, E.A. Williams, P.D. Coburn, C.A. Dorsey, B.D. Barrow, J.C. Stranieri, M.T. Holahan, M.A. Sitko, G.R. Cook, J.J. McMasters, D.R. McDonough, C.M. Sanders, W.M. Wallace, A.A. Clayton, F.C. Bohn, D. Leonard, Y.M. Detwiler Jr., T.J. Lynch Jr., J.J. Yan, Y. Chen, Z. Kuo, L. Gardell, S.J. Shafer, J.A. Vacca, J.P.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 101.1 90 71.22 72.21 73.30 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C20 H19 F3 N6 O2 432.399 2-(6-CHLORO-3-{[2,2-DIFLUORO-2-(2-PYRIDINYL)ETHYL]AMINO}-2-OXO-1(2H)-PYRAZINYL)-N-[(2-FLUORO-6-PYRIDINYL)METHYL]ACETAMIDE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Med.Chem. JMCMAR 0151 0022-2623 46 461 473 10.1021/jm020311f 12570369 Metabolism-directed optimization of 3-aminopyrazinone acetamide thrombin inhibitors. Development of an orally bioavailable series containing P1 and P3 pyridines. 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290 1 mirrors IMAGE PLATE 1999 RIGAKU RAXIS II mirrors SINGLE WAVELENGTH M x-ray 1 1.542 1.0 1.542 ROTATING ANODE RIGAKU RU200 4096.534 THROMBIN 3.4.21.5 light chain 1 nat polymer 29780.219 THROMBIN 3.4.21.5 heavy chain 1 nat polymer 1491.528 HIRUDIN IIB 1 syn polymer 432.399 2-(6-CHLORO-3-{[2,2-DIFLUORO-2-(2-PYRIDINYL)ETHYL]AMINO}-2-OXO-1(2H)-PYRAZINYL)-N-[(2-FLUORO-6-PYRIDINYL)METHYL]ACETAMIDE 1 syn non-polymer 18.015 water 103 nat water Coagulation factor II Coagulation factor II no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR A polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE B polypeptide(L) no yes DFEEIPEE(TYS)LQ DFEEIPEEYLQ C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens plasma human Homo sample 9606 Homo sapiens plasma 1 2.61 52.94 VAPOR DIFFUSION, HANGING DROP 7.3 pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 refine struct_conn struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Other Derived calculations Refinement description 1 0 2004-04-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2012-12-12 1 4 2013-03-13 1 5 2021-07-21 _refine.ls_percent_reflns_obs _refine.pdbx_ls_cross_valid_method _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1MU8 IS thrombin-hirugen_l-378,650. 1mue is thrombin-hirugen-L405,426. RCSB Y RCSB 2002-09-23 REL CDA 2-(6-CHLORO-3-{[2,2-DIFLUORO-2-(2-PYRIDINYL)ETHYL]AMINO}-2-OXO-1(2H)-PYRAZINYL)-N-[(2-FLUORO-6-PYRIDINYL)METHYL]ACETAMIDE HOH water This peptide was chemically synthesized. It is naturally found in Hirudo medicinalis (Medicinal leech). 6421 Hirudo medicinalis sample INH 1 4 CDA CDA 248 B HOH 25 5 HOH HOH 25 A HOH 38 5 HOH HOH 38 A HOH 39 5 HOH HOH 39 A HOH 42 5 HOH HOH 42 A HOH 48 5 HOH HOH 48 A HOH 71 5 HOH HOH 71 A HOH 74 5 HOH HOH 74 A HOH 83 5 HOH HOH 83 A HOH 93 5 HOH HOH 93 A HOH 1 5 HOH HOH 249 B HOH 2 5 HOH HOH 250 B HOH 3 5 HOH HOH 251 B HOH 4 5 HOH HOH 252 B HOH 5 5 HOH HOH 253 B HOH 6 5 HOH HOH 254 B HOH 7 5 HOH HOH 255 B HOH 8 5 HOH HOH 256 B HOH 9 5 HOH HOH 257 B HOH 10 5 HOH HOH 258 B HOH 11 5 HOH HOH 259 B HOH 12 5 HOH HOH 260 B HOH 13 5 HOH HOH 261 B HOH 14 5 HOH HOH 262 B HOH 15 5 HOH HOH 263 B HOH 16 5 HOH HOH 264 B HOH 17 5 HOH HOH 265 B HOH 18 5 HOH HOH 266 B HOH 19 5 HOH HOH 267 B HOH 20 5 HOH HOH 268 B HOH 21 5 HOH HOH 269 B HOH 22 5 HOH HOH 270 B HOH 23 5 HOH HOH 271 B HOH 24 5 HOH HOH 272 B HOH 26 5 HOH HOH 273 B HOH 27 5 HOH HOH 274 B HOH 28 5 HOH HOH 275 B HOH 29 5 HOH HOH 276 B HOH 30 5 HOH HOH 277 B HOH 31 5 HOH HOH 278 B HOH 32 5 HOH HOH 279 B HOH 33 5 HOH HOH 280 B HOH 34 5 HOH HOH 281 B HOH 35 5 HOH HOH 282 B HOH 36 5 HOH HOH 283 B HOH 37 5 HOH HOH 284 B HOH 40 5 HOH HOH 285 B HOH 41 5 HOH HOH 286 B HOH 43 5 HOH HOH 287 B HOH 44 5 HOH HOH 288 B HOH 45 5 HOH HOH 289 B HOH 46 5 HOH HOH 290 B HOH 47 5 HOH HOH 291 B HOH 49 5 HOH HOH 292 B HOH 50 5 HOH HOH 293 B HOH 51 5 HOH HOH 294 B HOH 52 5 HOH HOH 295 B HOH 53 5 HOH HOH 296 B HOH 54 5 HOH HOH 297 B HOH 55 5 HOH HOH 298 B HOH 56 5 HOH HOH 299 B HOH 57 5 HOH HOH 300 B HOH 58 5 HOH HOH 301 B HOH 59 5 HOH HOH 302 B HOH 60 5 HOH HOH 303 B HOH 61 5 HOH HOH 304 B HOH 62 5 HOH HOH 305 B HOH 63 5 HOH HOH 306 B HOH 64 5 HOH HOH 307 B HOH 65 5 HOH HOH 308 B HOH 66 5 HOH HOH 309 B HOH 67 5 HOH HOH 310 B HOH 68 5 HOH HOH 311 B HOH 69 5 HOH HOH 312 B HOH 70 5 HOH HOH 313 B HOH 72 5 HOH HOH 314 B HOH 73 5 HOH HOH 315 B HOH 75 5 HOH HOH 316 B HOH 76 5 HOH HOH 317 B HOH 77 5 HOH HOH 318 B HOH 78 5 HOH HOH 319 B HOH 79 5 HOH HOH 320 B HOH 80 5 HOH HOH 321 B HOH 81 5 HOH HOH 322 B HOH 82 5 HOH HOH 323 B HOH 84 5 HOH HOH 324 B HOH 85 5 HOH HOH 325 B HOH 86 5 HOH HOH 326 B HOH 87 5 HOH HOH 327 B HOH 89 5 HOH HOH 328 B HOH 90 5 HOH HOH 329 B HOH 92 5 HOH HOH 330 B HOH 94 5 HOH HOH 331 B HOH 95 5 HOH HOH 332 B HOH 96 5 HOH HOH 333 B HOH 97 5 HOH HOH 334 B HOH 98 5 HOH HOH 335 B HOH 99 5 HOH HOH 336 B HOH 100 5 HOH HOH 337 B HOH 101 5 HOH HOH 338 B HOH 102 5 HOH HOH 339 B HOH 103 5 HOH HOH 340 B HOH 88 5 HOH HOH 88 C HOH 91 5 HOH HOH 91 C n 1 H 1 A n 2 G 1 A n 3 F 1 A n 4 E 1 A n 5 D 1 A n 6 C 1 A n 7 B 1 A ASP 1 n 8 A ASP 1 A CYS 1 n 9 CYS 1 A GLY 2 n 10 GLY 2 A LEU 3 n 11 LEU 3 A ARG 4 n 12 ARG 4 A PRO 5 n 13 PRO 5 A LEU 6 n 14 LEU 6 A PHE 7 n 15 PHE 7 A GLU 8 n 16 GLU 8 A LYS 9 n 17 LYS 9 A LYS 10 n 18 LYS 10 A SER 11 n 19 SER 11 A LEU 12 n 20 LEU 12 A GLU 13 n 21 GLU 13 A ASP 14 n 22 ASP 14 A LYS 14 n 23 A LYS 14 A THR 14 n 24 B THR 14 A GLU 14 n 25 C GLU 14 A ARG 14 n 26 D ARG 14 A GLU 14 n 27 E GLU 14 A LEU 14 n 28 F LEU 14 A LEU 14 n 29 G LEU 14 A GLU 14 n 30 H GLU 14 A SER 14 n 31 I SER 14 A TYR 14 n 32 J TYR 14 A ALA 14 n 33 K ILE 14 A n 34 L 14 A n 35 M 14 A n 36 N 14 A ILE 16 n 1 ILE 16 B VAL 17 n 2 VAL 17 B GLU 18 n 3 GLU 18 B GLY 19 n 4 GLY 19 B SER 20 n 5 SER 20 B ASP 21 n 6 ASP 21 B ALA 22 n 7 ALA 22 B GLU 23 n 8 GLU 23 B ILE 24 n 9 ILE 24 B GLY 25 n 10 GLY 25 B MET 26 n 11 MET 26 B SER 27 n 12 SER 27 B PRO 28 n 13 PRO 28 B TRP 29 n 14 TRP 29 B GLN 30 n 15 GLN 30 B VAL 31 n 16 VAL 31 B MET 32 n 17 MET 32 B LEU 33 n 18 LEU 33 B PHE 34 n 19 PHE 34 B ARG 35 n 20 ARG 35 B LYS 36 n 21 LYS 36 B SER 36 n 22 A SER 36 B PRO 37 n 23 PRO 37 B GLN 38 n 24 GLN 38 B GLU 39 n 25 GLU 39 B LEU 40 n 26 LEU 40 B LEU 41 n 27 LEU 41 B CYS 42 n 28 CYS 42 B GLY 43 n 29 GLY 43 B ALA 44 n 30 ALA 44 B SER 45 n 31 SER 45 B LEU 46 n 32 LEU 46 B ILE 47 n 33 ILE 47 B SER 48 n 34 SER 48 B ASP 49 n 35 ASP 49 B ARG 50 n 36 ARG 50 B TRP 51 n 37 TRP 51 B VAL 52 n 38 VAL 52 B LEU 53 n 39 LEU 53 B THR 54 n 40 THR 54 B ALA 55 n 41 ALA 55 B ALA 56 n 42 ALA 56 B HIS 57 n 43 HIS 57 B CYS 58 n 44 CYS 58 B LEU 59 n 45 LEU 59 B LEU 60 n 46 LEU 60 B TYR 60 n 47 A TYR 60 B PRO 60 n 48 B PRO 60 B PRO 60 n 49 C PRO 60 B TRP 60 n 50 D TRP 60 B ASP 60 n 51 E ASP 60 B LYS 60 n 52 F LYS 60 B ASN 60 n 53 G ASN 60 B PHE 60 n 54 H PHE 60 B THR 60 n 55 I THR 60 B GLU 61 n 56 GLU 61 B ASN 62 n 57 ASN 62 B ASP 63 n 58 ASP 63 B LEU 64 n 59 LEU 64 B LEU 65 n 60 LEU 65 B VAL 66 n 61 VAL 66 B ARG 67 n 62 ARG 67 B ILE 68 n 63 ILE 68 B GLY 69 n 64 GLY 69 B LYS 70 n 65 LYS 70 B HIS 71 n 66 HIS 71 B SER 72 n 67 SER 72 B ARG 73 n 68 ARG 73 B THR 74 n 69 THR 74 B ARG 75 n 70 ARG 75 B TYR 76 n 71 TYR 76 B GLU 77 n 72 GLU 77 B ARG 77 n 73 A ARG 77 B ASN 78 n 74 ASN 78 B ILE 79 n 75 ILE 79 B GLU 80 n 76 GLU 80 B LYS 81 n 77 LYS 81 B ILE 82 n 78 ILE 82 B SER 83 n 79 SER 83 B MET 84 n 80 MET 84 B LEU 85 n 81 LEU 85 B GLU 86 n 82 GLU 86 B LYS 87 n 83 LYS 87 B ILE 88 n 84 ILE 88 B TYR 89 n 85 TYR 89 B ILE 90 n 86 ILE 90 B HIS 91 n 87 HIS 91 B PRO 92 n 88 PRO 92 B ARG 93 n 89 ARG 93 B TYR 94 n 90 TYR 94 B ASN 95 n 91 ASN 95 B TRP 96 n 92 TRP 96 B ARG 97 n 93 ARG 97 B GLU 97 n 94 A GLU 97 B ASN 98 n 95 ASN 98 B LEU 99 n 96 LEU 99 B ASP 100 n 97 ASP 100 B ARG 101 n 98 ARG 101 B ASP 102 n 99 ASP 102 B ILE 103 n 100 ILE 103 B ALA 104 n 101 ALA 104 B LEU 105 n 102 LEU 105 B MET 106 n 103 MET 106 B LYS 107 n 104 LYS 107 B LEU 108 n 105 LEU 108 B LYS 109 n 106 LYS 109 B LYS 110 n 107 LYS 110 B PRO 111 n 108 PRO 111 B VAL 112 n 109 VAL 112 B ALA 113 n 110 ALA 113 B PHE 114 n 111 PHE 114 B SER 115 n 112 SER 115 B ASP 116 n 113 ASP 116 B TYR 117 n 114 TYR 117 B ILE 118 n 115 ILE 118 B HIS 119 n 116 HIS 119 B PRO 120 n 117 PRO 120 B VAL 121 n 118 VAL 121 B CYS 122 n 119 CYS 122 B LEU 123 n 120 LEU 123 B PRO 124 n 121 PRO 124 B ASP 125 n 122 ASP 125 B ARG 126 n 123 ARG 126 B GLU 127 n 124 GLU 127 B THR 128 n 125 THR 128 B ALA 129 n 126 ALA 129 B ALA 129 n 127 A ALA 129 B SER 129 n 128 B SER 129 B LEU 129 n 129 C LEU 129 B LEU 130 n 130 LEU 130 B GLN 131 n 131 GLN 131 B ALA 132 n 132 ALA 132 B GLY 133 n 133 GLY 133 B TYR 134 n 134 TYR 134 B LYS 135 n 135 LYS 135 B GLY 136 n 136 GLY 136 B ARG 137 n 137 ARG 137 B VAL 138 n 138 VAL 138 B THR 139 n 139 THR 139 B GLY 140 n 140 GLY 140 B TRP 141 n 141 TRP 141 B GLY 142 n 142 GLY 142 B ASN 143 n 143 ASN 143 B LEU 144 n 144 LEU 144 B LYS 145 n 145 LYS 145 B GLU 146 n 146 GLU 146 B n 147 A 146 B n 148 B 146 B n 149 C 146 B n 150 D 146 B n 151 E 146 B n 152 F 146 B n 153 G 146 B n 154 H 146 B GLY 150 n 155 GLY 150 B GLN 151 n 156 GLN 151 B PRO 152 n 157 PRO 152 B SER 153 n 158 SER 153 B VAL 154 n 159 VAL 154 B LEU 155 n 160 LEU 155 B GLN 156 n 161 GLN 156 B VAL 157 n 162 VAL 157 B VAL 158 n 163 VAL 158 B ASN 159 n 164 ASN 159 B LEU 160 n 165 LEU 160 B PRO 161 n 166 PRO 161 B ILE 162 n 167 ILE 162 B VAL 163 n 168 VAL 163 B GLU 164 n 169 GLU 164 B ARG 165 n 170 ARG 165 B PRO 166 n 171 PRO 166 B VAL 167 n 172 VAL 167 B CYS 168 n 173 CYS 168 B LYS 169 n 174 LYS 169 B ASP 170 n 175 ASP 170 B SER 171 n 176 SER 171 B THR 172 n 177 THR 172 B ARG 173 n 178 ARG 173 B ILE 174 n 179 ILE 174 B ARG 175 n 180 ARG 175 B ILE 176 n 181 ILE 176 B THR 177 n 182 THR 177 B ASP 178 n 183 ASP 178 B ASN 179 n 184 ASN 179 B MET 180 n 185 MET 180 B PHE 181 n 186 PHE 181 B CYS 182 n 187 CYS 182 B ALA 183 n 188 ALA 183 B GLY 184 n 189 GLY 184 B TYR 184 n 190 A TYR 184 B LYS 185 n 191 LYS 185 B PRO 186 n 192 PRO 186 B ASP 186 n 193 A ASP 186 B GLU 186 n 194 B GLU 186 B GLY 186 n 195 C GLY 186 B LYS 186 n 196 D LYS 186 B ARG 187 n 197 ARG 187 B GLY 188 n 198 GLY 188 B ASP 189 n 199 ASP 189 B ALA 190 n 200 ALA 190 B CYS 191 n 201 CYS 191 B GLU 192 n 202 GLU 192 B GLY 193 n 203 GLY 193 B ASP 194 n 204 ASP 194 B SER 195 n 205 SER 195 B GLY 196 n 206 GLY 196 B GLY 197 n 207 GLY 197 B PRO 198 n 208 PRO 198 B PHE 199 n 209 PHE 199 B VAL 200 n 210 VAL 200 B MET 201 n 211 MET 201 B LYS 202 n 212 LYS 202 B SER 203 n 213 SER 203 B PRO 204 n 214 PRO 204 B PHE 204 n 215 A PHE 204 B ASN 204 n 216 B ASN 204 B ASN 205 n 217 ASN 205 B ARG 206 n 218 ARG 206 B TRP 207 n 219 TRP 207 B TYR 208 n 220 TYR 208 B GLN 209 n 221 GLN 209 B MET 210 n 222 MET 210 B GLY 211 n 223 GLY 211 B ILE 212 n 224 ILE 212 B VAL 213 n 225 VAL 213 B SER 214 n 226 SER 214 B TRP 215 n 227 TRP 215 B GLY 216 n 228 GLY 216 B GLU 217 n 229 GLU 217 B GLY 219 n 230 GLY 219 B CYS 220 n 231 CYS 220 B ASP 221 n 232 ASP 221 B ARG 221 n 233 A ARG 221 B ASP 222 n 234 ASP 222 B GLY 223 n 235 GLY 223 B LYS 224 n 236 LYS 224 B TYR 225 n 237 TYR 225 B GLY 226 n 238 GLY 226 B PHE 227 n 239 PHE 227 B TYR 228 n 240 TYR 228 B THR 229 n 241 THR 229 B HIS 230 n 242 HIS 230 B VAL 231 n 243 VAL 231 B PHE 232 n 244 PHE 232 B ARG 233 n 245 ARG 233 B LEU 234 n 246 LEU 234 B LYS 235 n 247 LYS 235 B LYS 236 n 248 LYS 236 B TRP 237 n 249 TRP 237 B ILE 238 n 250 ILE 238 B GLN 239 n 251 GLN 239 B LYS 240 n 252 LYS 240 B VAL 241 n 253 VAL 241 B ILE 242 n 254 ILE 242 B ASP 243 n 255 ASP 243 B GLN 244 n 256 GLN 244 B PHE 245 n 257 PHE 245 B GLY 246 n 258 GLY 246 B n 259 247 B ASP 355 n 1 ASP 355 C PHE 356 n 2 PHE 356 C GLU 357 n 3 GLU 357 C GLU 358 n 4 GLU 358 C ILE 359 n 5 ILE 359 C PRO 360 n 6 PRO 360 C GLU 361 n 7 GLU 361 C GLU 362 n 8 GLU 362 C TYS 363 n 9 TYS 363 C LEU 364 n 10 LEU 364 C ALA 365 n 11 GLN 365 C author_defined_assembly 3 trimeric C TYS 363 O-SULFO-L-TYROSINE C TYS 9 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N SER 20 B N SER 5 B O VAL 157 B O VAL 162 B O LEU 160 B O LEU 165 B N GLY 136 B N GLY 136 B N ARG 137 B N ARG 137 B O VAL 200 B O VAL 210 B N MET 201 B N MET 211 B O TYR 208 B O TYR 220 B N TRP 215 B N TRP 227 B O PHE 227 B O PHE 239 B O TYR 228 B O TYR 240 B N PHE 181 B N PHE 186 B O LYS 81 B O LYS 77 B N ILE 68 B N ILE 63 B O LEU 65 B O LEU 60 B N PHE 34 B N PHE 19 B N LEU 33 B N LEU 18 B O CYS 42 B O CYS 28 B N SER 45 B N SER 31 B O LEU 53 B O LEU 39 B N THR 54 B N THR 40 B O ALA 104 B O ALA 101 B O LEU 105 B O LEU 102 B N TYR 89 B N TYR 85 K 1 A CG1 ILE 14 A CG1 ILE 33 1 Y K 1 A CG2 ILE 14 A CG2 ILE 33 1 Y K 1 A CD1 ILE 14 A CD1 ILE 33 1 Y 1 C CG GLN 365 C CG GLN 11 1 Y 1 C CD GLN 365 C CD GLN 11 1 Y 1 C OE1 GLN 365 C OE1 GLN 11 1 Y 1 C NE2 GLN 365 C NE2 GLN 11 1 Y H 1 A THR 1 A THR 1 1 Y G 1 A PHE 1 A PHE 2 1 Y F 1 A GLY 1 A GLY 3 1 Y E 1 A SER 1 A SER 4 1 Y D 1 A GLY 1 A GLY 5 1 Y C 1 A GLU 1 A GLU 6 1 Y B 1 A ALA 1 A ALA 7 1 Y L 1 A ASP 14 A ASP 34 1 Y M 1 A GLY 14 A GLY 35 1 Y N 1 A ARG 14 A ARG 36 1 Y A 1 B THR 146 B THR 147 1 Y B 1 B TRP 146 B TRP 148 1 Y C 1 B THR 146 B THR 149 1 Y D 1 B ALA 146 B ALA 150 1 Y E 1 B ASN 146 B ASN 151 1 Y F 1 B VAL 146 B VAL 152 1 Y G 1 B GLY 146 B GLY 153 1 Y H 1 B LYS 146 B LYS 154 1 Y 1 B GLU 247 B GLU 259 1 Y 1 A PHE 7 -128.53 -86.91 A 1 B TYR 60 -162.51 77.95 G 1 B ASN 60 -159.62 76.96 1 B HIS 71 -133.77 -54.01 1 B ASN 78 69.02 -2.39 1 B SER 115 -164.63 -168.88 0.235 0.206 0.206 0.206 1.99 29.29 2235 24742 22747 91 1 FREE R-VALUE 0 0 FOURIER SYNTHESIS 1.99 29.29 103 2470 31 0 2336 1.99 29.29 1MU6 24996 22747 1 1 1 91 refinement CNX Crystal Structure of Thrombin in Complex with L-378,622 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A PHE 7 A PHE 15 HELX_P A SER 11 A SER 19 5 1 5 A THR 14 A THR 24 HELX_P A TYR 14 A TYR 32 1 2 9 B J B ALA 55 B ALA 41 HELX_P B CYS 58 B CYS 44 5 3 4 B PRO 60 B PRO 48 HELX_P B ASP 60 B ASP 51 5 4 4 B E B THR 60 B THR 55 HELX_P B ASN 62 B ASN 57 5 5 3 I B ASP 125 B ASP 122 HELX_P B LEU 130 B LEU 130 1 6 9 B GLU 164 B GLU 169 HELX_P B ASP 170 B ASP 175 1 7 7 B LEU 234 B LEU 246 HELX_P B GLY 246 B GLY 258 1 8 13 C PRO 360 C PRO 6 HELX_P C GLN 365 C GLN 11 1 9 6 disulf 2.436 A CYS 1 A SG CYS 9 1_555 B CYS 122 B SG CYS 119 1_555 disulf 2.485 B CYS 42 B SG CYS 28 1_555 B CYS 58 B SG CYS 44 1_555 disulf 2.441 B CYS 168 B SG CYS 173 1_555 B CYS 182 B SG CYS 187 1_555 disulf 2.562 B CYS 191 B SG CYS 201 1_555 B CYS 220 B SG CYS 231 1_555 covale 1.334 both C GLU 362 C C GLU 8 1_555 C TYS 363 C N TYS 9 1_555 covale 1.331 both C TYS 363 C C TYS 9 1_555 C LEU 364 C N LEU 10 1_555 BLOOD CLOTTING,HYDROLASE/INHIBITOR HYDROLASE, BLOOD CLOTTING, HYDROLASE-BLOOD CLOTTING COMPLEX, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, HYDROLASE-INHIBITOR complex B SER 36 B SER 22 A 1 B PRO 37 B PRO 23 -0.23 THRB_HUMAN UNP 1 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ITHF_HIRME UNP 3 55 P28506 DFEEIPEEYLQ 328 363 1MU6 1 14 P00734 H N A 1 1 36 364 622 1MU6 16 247 P00734 B 2 1 259 55 65 1MU6 355 365 P28506 C 3 1 11 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B SER 20 B SER 5 B ASP 21 B ASP 6 B GLN 156 B GLN 161 B PRO 161 B PRO 166 B LYS 135 B LYS 135 B GLY 140 B GLY 140 B PRO 198 B PRO 208 B LYS 202 B LYS 212 B TRP 207 B TRP 219 B TRP 215 B TRP 227 B GLY 226 B GLY 238 B HIS 230 B HIS 242 B MET 180 B MET 185 B ALA 183 B ALA 188 B LYS 81 B LYS 77 B SER 83 B SER 79 B LEU 64 B LEU 59 B ILE 68 B ILE 63 B GLN 30 B GLN 15 B ARG 35 B ARG 20 B GLU 39 B GLU 25 B LEU 46 B LEU 32 B TRP 51 B TRP 37 B THR 54 B THR 40 B ALA 104 B ALA 101 B LEU 108 B LEU 105 B LEU 85 B LEU 81 B ILE 90 B ILE 86 BINDING SITE FOR RESIDUE CDA B 248 B CDA 248 Software 15 BINDING SITE FOR CHAIN C OF HIRUDIN IIB Software 17 B HIS 57 B HIS 43 15 1_555 B TYR 60 B TYR 47 A 15 1_555 B GLU 97 B GLU 94 A 15 1_555 B LEU 99 B LEU 96 15 1_555 B ALA 190 B ALA 200 15 1_555 B CYS 191 B CYS 201 15 1_555 B GLU 192 B GLU 202 15 1_555 B SER 195 B SER 205 15 1_555 B VAL 213 B VAL 225 15 1_555 B SER 214 B SER 226 15 1_555 B TRP 215 B TRP 227 15 1_555 B GLY 216 B GLY 228 15 1_555 B GLU 217 B GLU 229 15 1_555 B GLY 219 B GLY 230 15 1_555 B HOH 328 F HOH 15 1_555 B PHE 34 B PHE 19 17 1_555 B GLN 38 B GLN 24 17 1_555 B LEU 40 B LEU 26 17 1_555 B LEU 65 B LEU 60 17 1_555 B ARG 67 B ARG 62 17 1_555 B ARG 73 B ARG 68 17 1_555 B THR 74 B THR 69 17 1_555 B ARG 75 B ARG 70 17 2_555 B ARG 75 B ARG 70 17 1_555 B TYR 76 B TYR 71 17 1_555 B LYS 81 B LYS 77 17 1_555 B ILE 82 B ILE 78 17 1_555 B SER 153 B SER 158 17 2_555 B HOH 286 F HOH 17 1_555 B HOH 317 F HOH 17 2_555 C HOH 88 G HOH 17 1_555 C HOH 91 G HOH 17 1_555 5 C 1 2 1