1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Znosko, B.M. Burkard, M.E. Schroeder, S.J. Krugh, T.R. Turner, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Biochemistry BICHAW 0033 0006-2960 41 14969 14977 10.1021/bi020326f 12475246 Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 2002 US Biochemistry BICHAW 0033 0006-2960 41 14978 14987 10.1021/bi0203278 Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 2002 10.2210/pdb1muv/pdb pdb_00001muv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2870.783 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3' 2 syn polymer no no GGCAAGCCU GGCAAGCCU A,B polyribonucleotide n n n n n n n n n -16.992 1 19 A 1 B 8 -1.115 A_G1:C8_B 1 -9.667 -0.625 -0.517 -0.166 -17.367 1 19 A 2 B 7 0.684 A_G2:C7_B 2 -12.232 -0.198 -0.461 0.020 -5.421 1 19 A 3 B 6 0.309 A_C3:G6_B 3 -7.961 0.663 -0.099 -0.163 2.154 10 A 4 B 5 -12.639 A_A4:A5_B 4 -5.615 6.494 -0.020 -4.342 -2.471 10 A 5 B 4 -12.697 A_A5:A4_B 5 -6.083 -6.493 -0.033 -4.340 4.739 1 19 A 6 B 3 0.373 A_G6:C3_B 6 -8.382 -0.662 -0.118 -0.164 17.250 1 19 A 7 B 2 0.614 A_C7:G2_B 7 -11.890 0.196 -0.455 0.021 18.098 1 19 A 8 B 1 -1.083 A_C8:G1_B 8 -9.831 0.626 -0.515 -0.160 2.576 32.030 A A 1 2 19.369 B B 8 7 3.344 10.495 0.242 -1.872 AA_G1G2:C7C8_BB 1 1.518 -2.800 30.267 -5.157 -0.183 3.015 33.404 A A 2 3 2.825 B B 7 6 3.089 1.623 -0.023 -1.452 AA_G2C3:G6C7_BB 2 -1.484 2.584 33.333 -2.776 -0.190 3.200 60.919 A A 3 4 3.206 B B 6 5 3.255 3.249 -0.752 -0.733 AA_C3A4:A5G6_BB 3 1.325 -1.307 60.828 -0.877 0.804 3.558 -19.041 A A 4 5 -4.584 B B 5 4 3.430 1.515 -0.003 -1.760 AA_A4A5:A4A5_BB 4 0.154 0.466 -18.981 4.487 0.077 3.215 60.877 A A 5 6 3.435 B B 4 3 3.273 3.478 0.746 -0.724 AA_A5G6:C3A4_BB 5 -1.372 1.355 60.773 -0.880 -0.802 3.010 33.468 A A 6 7 2.701 B B 3 2 3.079 1.555 0.015 -1.422 AA_G6C7:G2C3_BB 6 1.314 -2.283 33.407 -2.708 0.176 2.594 31.889 A A 7 8 18.656 B B 2 1 3.319 10.079 -0.192 -1.840 AA_C7C8:G1G2_BB 7 -1.534 2.839 30.256 -5.053 0.090 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-12-18 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name 1yfv is Tandem, sheared GA pairs in the same stem, determined by 2D NMR 1gid is Tandem, sheared AA pairs in the J4/5 loop of Tetrahymena thermophila, determined by x-ray crystallography 1mv1 is The tandem, sheared PA Pairs in 5'(rGGCPAGCCU)2 1mv2 is The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2 1mv6 is The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2 RCSB Y RCSB 2002-09-24 REL REL 1 2D NOESY 80 mM NaCl 6.8 ambient 273 K 80 mM NaCl 6.9 ambient 303 K The structure is based on a total of 83 interproton distance restraints per strand, 18 hydrogen bond restraints, and 46 dihedral angle restraints per strand simulated annealing, energy minimization 1 closest to the average 1mM RNA, 80 mM NaCl, 10mM phosphate buffer, 0.5mM EDTA; 90% H2O, 10% D2O 90% H2O/10% D2O 2mM RNA, 80 mM NaCl, 10mM phosphate buffer, 0.5mM EDTA; 99.996% D2O 99.996% D2O Varian collection VNMR 5.2 MSI data analysis Felix 2000 MSI structure solution Discover 95.0 MSI refinement Discover 95.0 500 Varian INOVA G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A A 4 n 4 A 4 A A 5 n 5 A 5 A G 6 n 6 G 6 A C 7 n 7 C 7 A C 8 n 8 C 8 A U 9 n 9 U 9 A G 1 n 1 G 1 B G 2 n 2 G 2 B C 3 n 3 C 3 B A 4 n 4 A 4 B A 5 n 5 A 5 B G 6 n 6 G 6 B C 7 n 7 C 7 B C 8 n 8 C 8 B U 9 n 9 U 9 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 5.51 0.70 108.50 114.01 A A A O4' C1' N1 C C C 3 3 3 N 1 5.03 0.70 108.50 113.53 A A A O4' C1' N1 C C C 8 8 8 N 1 5.48 0.70 108.50 113.98 B B B O4' C1' N1 C C C 3 3 3 N 1 4.93 0.70 108.50 113.43 B B B O4' C1' N1 C C C 8 8 8 N Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 1 N N 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 8 B N3 C 8 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 8 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 8 B N4 C 8 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 7 B N3 C 7 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 7 B O2 C 7 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 7 B N4 C 7 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 B G 6 B N1 G 6 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 B G 6 B O6 G 6 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 B G 6 B N2 G 6 1_555 hydrog A-A MISPAIR A A 4 A N3 A 4 1_555 B A 5 B N6 A 5 1_555 hydrog A-A MISPAIR A A 5 A N6 A 5 1_555 B A 4 B N3 A 4 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 B C 3 B N3 C 3 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 B C 3 B O2 C 3 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 B C 3 B N4 C 3 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 B G 2 B N1 G 2 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 B G 2 B O6 G 2 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 B G 2 B N2 G 2 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 B G 1 B N1 G 1 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 B G 1 B O6 G 1 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 B G 1 B N2 G 1 1_555 RNA ribonucleic acid, duplex, tandem mismatch, AA mismatch, RNA 1MUV PDB 1 1MUV 1 9 1MUV 1 9 1MUV A 1 1 9 1 9 1MUV 1 9 1MUV B 1 1 9