1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Znosko, B.M.
Burkard, M.E.
Schroeder, S.J.
Krugh, T.R.
Turner, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Biochemistry
BICHAW
0033
0006-2960
41
14969
14977
10.1021/bi020326f
12475246
Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of
5'(rGGCAAGCCU)2
2002
US
Biochemistry
BICHAW
0033
0006-2960
41
14978
14987
10.1021/bi0203278
Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
2002
10.2210/pdb1muv/pdb
pdb_00001muv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2870.783
5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
2
syn
polymer
no
no
GGCAAGCCU
GGCAAGCCU
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
-16.992
1
19
A
1
B
8
-1.115
A_G1:C8_B
1
-9.667
-0.625
-0.517
-0.166
-17.367
1
19
A
2
B
7
0.684
A_G2:C7_B
2
-12.232
-0.198
-0.461
0.020
-5.421
1
19
A
3
B
6
0.309
A_C3:G6_B
3
-7.961
0.663
-0.099
-0.163
2.154
10
A
4
B
5
-12.639
A_A4:A5_B
4
-5.615
6.494
-0.020
-4.342
-2.471
10
A
5
B
4
-12.697
A_A5:A4_B
5
-6.083
-6.493
-0.033
-4.340
4.739
1
19
A
6
B
3
0.373
A_G6:C3_B
6
-8.382
-0.662
-0.118
-0.164
17.250
1
19
A
7
B
2
0.614
A_C7:G2_B
7
-11.890
0.196
-0.455
0.021
18.098
1
19
A
8
B
1
-1.083
A_C8:G1_B
8
-9.831
0.626
-0.515
-0.160
2.576
32.030
A
A
1
2
19.369
B
B
8
7
3.344
10.495
0.242
-1.872
AA_G1G2:C7C8_BB
1
1.518
-2.800
30.267
-5.157
-0.183
3.015
33.404
A
A
2
3
2.825
B
B
7
6
3.089
1.623
-0.023
-1.452
AA_G2C3:G6C7_BB
2
-1.484
2.584
33.333
-2.776
-0.190
3.200
60.919
A
A
3
4
3.206
B
B
6
5
3.255
3.249
-0.752
-0.733
AA_C3A4:A5G6_BB
3
1.325
-1.307
60.828
-0.877
0.804
3.558
-19.041
A
A
4
5
-4.584
B
B
5
4
3.430
1.515
-0.003
-1.760
AA_A4A5:A4A5_BB
4
0.154
0.466
-18.981
4.487
0.077
3.215
60.877
A
A
5
6
3.435
B
B
4
3
3.273
3.478
0.746
-0.724
AA_A5G6:C3A4_BB
5
-1.372
1.355
60.773
-0.880
-0.802
3.010
33.468
A
A
6
7
2.701
B
B
3
2
3.079
1.555
0.015
-1.422
AA_G6C7:G2C3_BB
6
1.314
-2.283
33.407
-2.708
0.176
2.594
31.889
A
A
7
8
18.656
B
B
2
1
3.319
10.079
-0.192
-1.840
AA_C7C8:G1G2_BB
7
-1.534
2.839
30.256
-5.053
0.090
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-12-18
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1yfv is Tandem, sheared GA pairs in the same stem, determined by 2D NMR
1gid is Tandem, sheared AA pairs in the J4/5 loop of Tetrahymena thermophila, determined by x-ray crystallography
1mv1 is The tandem, sheared PA Pairs in 5'(rGGCPAGCCU)2
1mv2 is The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2
1mv6 is The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2
RCSB
Y
RCSB
2002-09-24
REL
REL
1
2D NOESY
80 mM NaCl
6.8
ambient
273
K
80 mM NaCl
6.9
ambient
303
K
The structure is based on a total of 83 interproton distance restraints per strand, 18 hydrogen bond restraints, and 46 dihedral angle restraints per strand
simulated annealing, energy minimization
1
closest to the average
1mM RNA, 80 mM NaCl, 10mM phosphate buffer, 0.5mM EDTA; 90% H2O, 10% D2O
90% H2O/10% D2O
2mM RNA, 80 mM NaCl, 10mM phosphate buffer, 0.5mM EDTA; 99.996% D2O
99.996% D2O
Varian
collection
VNMR
5.2
MSI
data analysis
Felix
2000
MSI
structure solution
Discover
95.0
MSI
refinement
Discover
95.0
500
Varian
INOVA
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
A
4
n
4
A
4
A
A
5
n
5
A
5
A
G
6
n
6
G
6
A
C
7
n
7
C
7
A
C
8
n
8
C
8
A
U
9
n
9
U
9
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
C
3
n
3
C
3
B
A
4
n
4
A
4
B
A
5
n
5
A
5
B
G
6
n
6
G
6
B
C
7
n
7
C
7
B
C
8
n
8
C
8
B
U
9
n
9
U
9
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
5.51
0.70
108.50
114.01
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
1
5.03
0.70
108.50
113.53
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
1
5.48
0.70
108.50
113.98
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
1
4.93
0.70
108.50
113.43
B
B
B
O4'
C1'
N1
C
C
C
8
8
8
N
Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
8
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
8
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
8
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
7
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
7
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
7
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
B
G
6
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
B
G
6
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
B
G
6
B
N2
G
6
1_555
hydrog
A-A MISPAIR
A
A
4
A
N3
A
4
1_555
B
A
5
B
N6
A
5
1_555
hydrog
A-A MISPAIR
A
A
5
A
N6
A
5
1_555
B
A
4
B
N3
A
4
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
B
C
3
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
B
C
3
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
B
C
3
B
N4
C
3
1_555
hydrog
WATSON-CRICK
A
C
7
A
N3
C
7
1_555
B
G
2
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
N4
C
7
1_555
B
G
2
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
7
A
O2
C
7
1_555
B
G
2
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
1
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
1
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
1
B
N2
G
1
1_555
RNA
ribonucleic acid, duplex, tandem mismatch, AA mismatch, RNA
1MUV
PDB
1
1MUV
1
9
1MUV
1
9
1MUV
A
1
1
9
1
9
1MUV
1
9
1MUV
B
1
1
9