1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Greenfield, N.J.
Swapna, G.V.T.
Huang, Y.
Palm, T.
Graboski, S.
Montelione, G.T.
Hitchcock-Degregori, S.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
614
619
10.1021/bi026989e
12534273
The Structure of the Carboxyl Terminus of Striated alpha-Tropomyosin in Solution Reveals an Unusual Parallel Arrangement of Interacting alpha-Helices
2003
10.2210/pdb1mv4/pdb
pdb_00001mv4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4177.707
Tropomyosin 1 alpha chain
C-TERMINAL (RESIDUES 251-284)
2
man
polymer
Alpha-tropomyosin
no
no
GCGKSIDDLEDELYAQKLKYKAISEELDHALKDMTSI
GCGKSIDDLEDELYAQKLKYKAISEELDHALKDMTSI
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
SKELETAL MUSCLE
Escherichia
sample
TPM1
10116
Rattus norvegicus
562
Escherichia coli
DH5
PLASMID
PPROEX HTA
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-02-18
1
1
2007-10-21
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1IHQ IS Glytm1bzip: A Chimeric Peptide Model Of The N-Terminus Of A Rat Short Alpha Tropomyosin With The N-Terminus Encoded By Exon 1b
1TMZ IS Tmzip: A Chimeric Peptide Model Of The N-Terminus Of Alpha Tropomyosin, Nmr, 15 Structures
1IC2 IS Deciphering The Design Of The Tropomyosin Molecule
SEQUENCE
THIS SEQUENCE HAS A SYNTHETIC GCG AT N-TERMINUS
AND CONTAINS THE MUTATION N279K. THE SEQUENCE
DATABASE MATCH, HOWEVER, erroneously HAS A K AT
THIS POSITION as well. The sequence in the database should
have an ASN at position 279, which has been engineered
to LYS in this entry.
RCSB
Y
RCSB
2002-09-24
REL
REL
THE RESONANCE ASSIGNMENTS WERE MADE USING THROUGH BOND TRIPLE RESONANCE EXPERIMENTS INCLUDING HN(CA)CO, HNCO, H(CA)(C0)NH, H(CA)NH, CA(CO)NH, CANH, CBCA(CO)NH, CBCANH, HCCH-COSY AND CCH-COSY
STRUCTURES WITH COVALENT GEOMETRY, STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS
200
10
3D_13C-separated_NOESY
3D_15N-separated_NOESY
3D_13C-X-FILTERED NOESY
0.12 N
6.40
1
atm
283.00
K
REFINEMENT DETAILS CAN BE FOUND IN REFERENCE CITED ABOVE
1648 CONFORMATIONALLY- RESTRICTING NOE CONSTRAINTS (OUT OF A TOTAL OF 2036 NOE DERIVED DISTANCES) 52 LOOSE DIHEDRAL ANGLE CONSTRAINTS AND 48 BACKBONE INTRA- HELICAL HYDROGEN BOND CONSTRAINTS WERE UTILILIZED.
1
fewest violations
1-2 MM
100 MM NACL, 20 MM POTASSIUM PHOSPHATE, 10% DUETERIUM OXIDE, 90% H20, PH 6.4
GUNTERT, WUTHRICH
refinement
DYANA
1.5
VARIAN ASSOCIATES
structure solution
VNMR
5.3B
GUNTERT, WUTHRICH
structure solution
DYANA
1.5
HUANG, MONTELIONE
structure solution
AutoAssign
1.0
HUANG, MONTELIONE
structure solution
AutoStructure
1.0
GODDARD, KNELLER
structure solution
Sparky
3.74
600
Varian
INOVA
GLY
248
n
1
GLY
248
A
CYS
249
n
2
CYS
249
A
GLY
250
n
3
GLY
250
A
LYS
251
n
4
LYS
251
A
SER
252
n
5
SER
252
A
ILE
253
n
6
ILE
253
A
ASP
254
n
7
ASP
254
A
ASP
255
n
8
ASP
255
A
LEU
256
n
9
LEU
256
A
GLU
257
n
10
GLU
257
A
ASP
258
n
11
ASP
258
A
GLU
259
n
12
GLU
259
A
LEU
260
n
13
LEU
260
A
TYR
261
n
14
TYR
261
A
ALA
262
n
15
ALA
262
A
GLN
263
n
16
GLN
263
A
LYS
264
n
17
LYS
264
A
LEU
265
n
18
LEU
265
A
LYS
266
n
19
LYS
266
A
TYR
267
n
20
TYR
267
A
LYS
268
n
21
LYS
268
A
ALA
269
n
22
ALA
269
A
ILE
270
n
23
ILE
270
A
SER
271
n
24
SER
271
A
GLU
272
n
25
GLU
272
A
GLU
273
n
26
GLU
273
A
LEU
274
n
27
LEU
274
A
ASP
275
n
28
ASP
275
A
HIS
276
n
29
HIS
276
A
ALA
277
n
30
ALA
277
A
LEU
278
n
31
LEU
278
A
LYS
279
n
32
LYS
279
A
ASP
280
n
33
ASP
280
A
MET
281
n
34
MET
281
A
THR
282
n
35
THR
282
A
SER
283
n
36
SER
283
A
ILE
284
n
37
ILE
284
A
GLY
248
n
1
GLY
248
B
CYS
249
n
2
CYS
249
B
GLY
250
n
3
GLY
250
B
LYS
251
n
4
LYS
251
B
SER
252
n
5
SER
252
B
ILE
253
n
6
ILE
253
B
ASP
254
n
7
ASP
254
B
ASP
255
n
8
ASP
255
B
LEU
256
n
9
LEU
256
B
GLU
257
n
10
GLU
257
B
ASP
258
n
11
ASP
258
B
GLU
259
n
12
GLU
259
B
LEU
260
n
13
LEU
260
B
TYR
261
n
14
TYR
261
B
ALA
262
n
15
ALA
262
B
GLN
263
n
16
GLN
263
B
LYS
264
n
17
LYS
264
B
LEU
265
n
18
LEU
265
B
LYS
266
n
19
LYS
266
B
TYR
267
n
20
TYR
267
B
LYS
268
n
21
LYS
268
B
ALA
269
n
22
ALA
269
B
ILE
270
n
23
ILE
270
B
SER
271
n
24
SER
271
B
GLU
272
n
25
GLU
272
B
GLU
273
n
26
GLU
273
B
LEU
274
n
27
LEU
274
B
ASP
275
n
28
ASP
275
B
HIS
276
n
29
HIS
276
B
ALA
277
n
30
ALA
277
B
LEU
278
n
31
LEU
278
B
LYS
279
n
32
LYS
279
B
ASP
280
n
33
ASP
280
B
MET
281
n
34
MET
281
B
THR
282
n
35
THR
282
B
SER
283
n
36
SER
283
B
ILE
284
n
37
ILE
284
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
LEU
THR
278
282
1.54
5
A
A
O
H
LEU
THR
278
282
1.58
7
B
B
O
H
SER
LEU
252
256
1.50
10
B
B
O
H
THR
ILE
282
284
1.47
1
A
CYS
249
47.35
-154.92
1
A
LYS
251
-141.51
-81.12
1
A
SER
252
-151.04
37.22
1
A
LEU
260
-64.91
-73.92
1
A
THR
282
55.11
160.02
1
A
SER
283
-54.19
91.21
1
B
CYS
249
-117.41
-77.45
1
B
LYS
251
-151.91
-90.25
1
B
THR
282
55.01
164.91
2
A
LYS
251
172.65
-83.82
2
A
SER
252
-142.65
22.05
2
A
LEU
256
-52.78
-76.07
2
A
LEU
260
-65.54
-77.00
2
A
SER
283
3.72
98.79
2
B
CYS
249
87.55
-55.45
2
B
LYS
251
-163.02
-96.92
2
B
SER
252
-160.07
42.13
2
B
ASP
258
-69.49
-71.85
2
B
LEU
260
-64.87
-72.26
2
B
THR
282
47.63
-178.41
3
A
CYS
249
173.91
-151.72
3
A
LYS
251
-154.81
-61.73
3
A
THR
282
33.34
-154.74
3
B
LYS
251
-171.29
-54.60
3
B
LEU
260
-67.73
-75.99
3
B
SER
283
8.58
96.95
4
A
CYS
249
72.18
-65.68
4
A
LYS
251
165.42
-72.40
4
A
LEU
256
-56.78
-76.55
4
A
ASP
258
-50.57
-71.18
4
A
LEU
260
-64.54
-76.94
4
A
THR
282
27.04
-135.23
4
B
CYS
249
-172.87
99.73
4
B
LYS
251
-158.68
-71.82
4
B
ASP
258
-66.32
-72.12
4
B
THR
282
49.29
179.10
5
A
LYS
251
176.16
-84.42
5
A
THR
282
46.47
-174.95
5
B
CYS
249
65.47
-107.33
5
B
LYS
251
175.65
-73.98
5
B
LEU
256
-56.11
-72.30
5
B
ASP
258
-50.54
-72.03
5
B
LEU
260
-70.45
-75.37
5
B
TYR
261
-37.57
-37.33
5
B
THR
282
52.98
165.78
6
A
CYS
249
89.06
-42.87
6
A
LYS
251
163.25
-73.16
6
A
LEU
256
-60.67
-70.60
6
A
LEU
260
-67.80
-78.50
6
A
THR
282
46.58
-173.70
6
B
CYS
249
51.44
-149.13
6
B
LYS
251
178.33
-99.88
6
B
SER
252
-148.23
24.54
6
B
THR
282
44.76
-160.09
6
B
SER
283
-77.78
22.32
7
A
CYS
249
47.16
91.77
7
A
LYS
251
-165.57
-68.94
7
A
THR
282
-48.18
155.47
7
A
SER
283
4.27
96.90
7
B
CYS
249
46.42
-97.13
7
B
LYS
251
175.13
-85.57
7
B
ILE
253
-32.99
-37.78
7
B
ASP
254
-58.72
-74.97
7
B
LEU
256
-66.13
-77.59
7
B
ASP
258
-68.29
-70.36
7
B
THR
282
53.93
165.27
8
A
CYS
249
88.13
-45.14
8
A
LYS
251
-155.62
-84.38
8
A
ASP
254
-45.69
-70.62
8
A
LEU
260
-63.86
-75.27
8
A
THR
282
45.71
-173.62
8
B
LYS
251
176.39
-93.20
8
B
ASP
258
-65.58
-73.22
8
B
THR
282
81.29
20.77
9
A
CYS
249
44.24
94.50
9
A
LYS
251
-177.05
-57.94
9
A
SER
252
-154.53
86.93
9
A
ASP
258
-66.13
-71.76
9
A
THR
282
42.29
-168.94
9
B
CYS
249
-145.47
-133.83
9
B
LYS
251
165.17
-89.23
9
B
LEU
256
-59.03
-70.86
9
B
ASP
258
-61.46
-74.93
9
B
LEU
260
-64.86
-76.25
9
B
THR
282
31.15
-148.75
10
A
CYS
249
60.10
-87.48
10
A
LYS
251
-155.39
-93.32
10
A
SER
252
-152.80
72.12
10
A
ASP
258
-59.92
-70.12
10
A
LEU
260
-67.17
-75.28
10
A
THR
282
53.11
163.40
10
B
LYS
251
-176.32
-128.66
10
B
LEU
256
-65.42
-70.14
10
B
LEU
260
-68.08
-71.90
10
B
THR
282
-38.87
-179.19
10
B
SER
283
-65.87
53.64
TM9A251-284: A Peptide Model of the C-Terminus of a Rat Striated Alpha Tropomyosin
1
N
N
1
N
N
A
ILE
253
A
ILE
6
HELX_P
A
THR
282
A
THR
35
1
1
30
B
ILE
253
B
ILE
6
HELX_P
B
ASP
280
B
ASP
33
1
2
28
disulf
2.026
A
CYS
249
A
SG
CYS
2
1_555
B
CYS
249
B
SG
CYS
2
1_555
DE NOVO PROTEIN
TROPOMYOSIN, EXON 9A, ACTIN-BINDING, TROPONIN BINDING, MUSCLE, ALPHA-HELIX, COILED-COIL, DIMER, PEPTIDE-MODEL, TWO-CHAINED, DISULFIDE CROSS-LINKED, DE NOVO PROTEIN
TPM1_RAT
UNP
1
251
P04692
KSIDDLEDELYAQKLKYKAISEELDHALKDMTSI
251
284
1MV4
251
284
P04692
A
1
4
37
251
284
1MV4
251
284
P04692
B
1
4
37
1
SEE REMARK 999
GLY
248
1MV4
A
P04692
UNP
1
1
SEE REMARK 999
CYS
249
1MV4
A
P04692
UNP
2
1
SEE REMARK 999
GLY
250
1MV4
A
P04692
UNP
3
2
SEE REMARK 999
GLY
248
1MV4
B
P04692
UNP
1
2
SEE REMARK 999
CYS
249
1MV4
B
P04692
UNP
2
2
SEE REMARK 999
GLY
250
1MV4
B
P04692
UNP
3
1
P 1