0.011246 0.006493 0.000000 0.000000 0.012990 0.000000 0.000000 0.000000 0.012692 0.00000 0.00000 0.00000 Ohlendorf, D.H. Foundling, S.I. Salemme, F.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 88.920 88.920 78.790 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proteins PSFGEY 0867 0887-3585 14 382 391 10.1002/prot.340140307 1332025 Structural studies of the retroviral proteinase from avian myeloblastosis associated virus. 1992 10.2210/pdb1mvp/pdb pdb_00001mvp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 13611.836 MYELOBLASTOSIS ASSOCIATED VIRAL PROTEASE 3.4.23.- 2 man polymer 18.015 water 133 nat water no no LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Alpharetrovirus sample 11960 Avian myeloblastosis-associated virus 3.30 62.74 pdbx_database_status struct_conf struct_conf_type chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Derived calculations Other Data collection Database references 1 0 1992-01-15 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 1 4 2024-02-14 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1990-09-07 REL HOH water HOH 1 2 HOH HOH 125 A HOH 2 2 HOH HOH 126 A HOH 3 2 HOH HOH 127 A HOH 4 2 HOH HOH 128 A HOH 5 2 HOH HOH 129 A HOH 6 2 HOH HOH 130 A HOH 7 2 HOH HOH 131 A HOH 8 2 HOH HOH 132 A HOH 10 2 HOH HOH 133 A HOH 11 2 HOH HOH 134 A HOH 12 2 HOH HOH 135 A HOH 13 2 HOH HOH 136 A HOH 14 2 HOH HOH 137 A HOH 15 2 HOH HOH 138 A HOH 16 2 HOH HOH 139 A HOH 17 2 HOH HOH 140 A HOH 18 2 HOH HOH 141 A HOH 19 2 HOH HOH 142 A HOH 20 2 HOH HOH 143 A HOH 21 2 HOH HOH 144 A HOH 22 2 HOH HOH 145 A HOH 24 2 HOH HOH 146 A HOH 25 2 HOH HOH 147 A HOH 26 2 HOH HOH 148 A HOH 27 2 HOH HOH 149 A HOH 28 2 HOH HOH 150 A HOH 29 2 HOH HOH 151 A HOH 30 2 HOH HOH 152 A HOH 31 2 HOH HOH 153 A HOH 32 2 HOH HOH 154 A HOH 33 2 HOH HOH 155 A HOH 34 2 HOH HOH 156 A HOH 35 2 HOH HOH 157 A HOH 36 2 HOH HOH 158 A HOH 37 2 HOH HOH 159 A HOH 38 2 HOH HOH 160 A HOH 39 2 HOH HOH 161 A HOH 40 2 HOH HOH 162 A HOH 41 2 HOH HOH 163 A HOH 42 2 HOH HOH 164 A HOH 43 2 HOH HOH 165 A HOH 44 2 HOH HOH 166 A HOH 45 2 HOH HOH 167 A HOH 46 2 HOH HOH 168 A HOH 47 2 HOH HOH 169 A HOH 48 2 HOH HOH 170 A HOH 49 2 HOH HOH 171 A HOH 50 2 HOH HOH 172 A HOH 51 2 HOH HOH 173 A HOH 52 2 HOH HOH 174 A HOH 54 2 HOH HOH 175 A HOH 55 2 HOH HOH 176 A HOH 56 2 HOH HOH 177 A HOH 57 2 HOH HOH 178 A HOH 58 2 HOH HOH 179 A HOH 59 2 HOH HOH 180 A HOH 132 2 HOH HOH 181 A HOH 9 2 HOH HOH 125 B HOH 23 2 HOH HOH 126 B HOH 53 2 HOH HOH 127 B HOH 60 2 HOH HOH 128 B HOH 61 2 HOH HOH 129 B HOH 62 2 HOH HOH 130 B HOH 63 2 HOH HOH 131 B HOH 64 2 HOH HOH 132 B HOH 65 2 HOH HOH 133 B HOH 66 2 HOH HOH 134 B HOH 67 2 HOH HOH 135 B HOH 68 2 HOH HOH 136 B HOH 69 2 HOH HOH 137 B HOH 70 2 HOH HOH 138 B HOH 71 2 HOH HOH 139 B HOH 72 2 HOH HOH 140 B HOH 73 2 HOH HOH 141 B HOH 74 2 HOH HOH 142 B HOH 75 2 HOH HOH 143 B HOH 76 2 HOH HOH 144 B HOH 77 2 HOH HOH 145 B HOH 78 2 HOH HOH 146 B HOH 79 2 HOH HOH 147 B HOH 80 2 HOH HOH 148 B HOH 81 2 HOH HOH 149 B HOH 82 2 HOH HOH 150 B HOH 83 2 HOH HOH 151 B HOH 84 2 HOH HOH 152 B HOH 85 2 HOH HOH 153 B HOH 86 2 HOH HOH 154 B HOH 87 2 HOH HOH 155 B HOH 88 2 HOH HOH 156 B HOH 89 2 HOH HOH 157 B HOH 90 2 HOH HOH 158 B HOH 91 2 HOH HOH 159 B HOH 92 2 HOH HOH 160 B HOH 93 2 HOH HOH 161 B HOH 94 2 HOH HOH 162 B HOH 95 2 HOH HOH 163 B HOH 96 2 HOH HOH 164 B HOH 97 2 HOH HOH 165 B HOH 98 2 HOH HOH 166 B HOH 99 2 HOH HOH 167 B HOH 100 2 HOH HOH 168 B HOH 101 2 HOH HOH 169 B HOH 102 2 HOH HOH 170 B HOH 103 2 HOH HOH 171 B HOH 104 2 HOH HOH 172 B HOH 105 2 HOH HOH 173 B HOH 106 2 HOH HOH 174 B HOH 107 2 HOH HOH 175 B HOH 108 2 HOH HOH 176 B HOH 109 2 HOH HOH 177 B HOH 110 2 HOH HOH 178 B HOH 111 2 HOH HOH 179 B HOH 112 2 HOH HOH 180 B HOH 113 2 HOH HOH 181 B HOH 114 2 HOH HOH 182 B HOH 115 2 HOH HOH 183 B HOH 116 2 HOH HOH 184 B HOH 117 2 HOH HOH 185 B HOH 118 2 HOH HOH 186 B HOH 119 2 HOH HOH 187 B HOH 120 2 HOH HOH 188 B HOH 121 2 HOH HOH 189 B HOH 122 2 HOH HOH 190 B HOH 123 2 HOH HOH 191 B HOH 124 2 HOH HOH 192 B HOH 125 2 HOH HOH 193 B HOH 126 2 HOH HOH 194 B HOH 127 2 HOH HOH 195 B HOH 128 2 HOH HOH 196 B HOH 129 2 HOH HOH 197 B HOH 130 2 HOH HOH 198 B HOH 131 2 HOH HOH 199 B HOH 133 2 HOH HOH 200 B LEU 1 n 1 LEU 1 A ALA 2 n 2 ALA 2 A MET 3 n 3 MET 3 A THR 4 n 4 THR 4 A MET 5 n 5 MET 5 A GLU 6 n 6 GLU 6 A HIS 7 n 7 HIS 7 A LYS 8 n 8 LYS 8 A ASP 9 n 9 ASP 9 A ARG 10 n 10 ARG 10 A PRO 11 n 11 PRO 11 A LEU 12 n 12 LEU 12 A VAL 13 n 13 VAL 13 A ARG 14 n 14 ARG 14 A VAL 15 n 15 VAL 15 A ILE 16 n 16 ILE 16 A LEU 17 n 17 LEU 17 A THR 18 n 18 THR 18 A ASN 19 n 19 ASN 19 A THR 20 n 20 THR 20 A GLY 21 n 21 GLY 21 A SER 22 n 22 SER 22 A HIS 23 n 23 HIS 23 A PRO 24 n 24 PRO 24 A VAL 25 n 25 VAL 25 A LYS 26 n 26 LYS 26 A GLN 27 n 27 GLN 27 A ARG 28 n 28 ARG 28 A SER 29 n 29 SER 29 A VAL 30 n 30 VAL 30 A TYR 31 n 31 TYR 31 A ILE 32 n 32 ILE 32 A THR 33 n 33 THR 33 A ALA 34 n 34 ALA 34 A LEU 35 n 35 LEU 35 A LEU 36 n 36 LEU 36 A ASP 37 n 37 ASP 37 A SER 38 n 38 SER 38 A GLY 39 n 39 GLY 39 A ALA 40 n 40 ALA 40 A ASP 41 n 41 ASP 41 A ILE 42 n 42 ILE 42 A THR 43 n 43 THR 43 A ILE 44 n 44 ILE 44 A ILE 45 n 45 ILE 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A GLU 48 n 48 GLU 48 A ASP 49 n 49 ASP 49 A TRP 50 n 50 TRP 50 A PRO 51 n 51 PRO 51 A THR 52 n 52 THR 52 A ASP 53 n 53 ASP 53 A TRP 54 n 54 TRP 54 A PRO 55 n 55 PRO 55 A VAL 56 n 56 VAL 56 A MET 57 n 57 MET 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A n 60 60 A n 61 61 A n 62 62 A n 63 63 A n 64 64 A n 65 65 A n 66 66 A n 67 67 A n 68 68 A n 69 69 A n 70 70 A n 71 71 A PRO 72 n 72 PRO 72 A MET 73 n 73 MET 73 A ARG 74 n 74 ARG 74 A LYS 75 n 75 LYS 75 A SER 76 n 76 SER 76 A ARG 77 n 77 ARG 77 A ASP 78 n 78 ASP 78 A MET 79 n 79 MET 79 A ILE 80 n 80 ILE 80 A GLU 81 n 81 GLU 81 A VAL 82 n 82 VAL 82 A GLY 83 n 83 GLY 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A ASN 86 n 86 ASN 86 A ARG 87 n 87 ARG 87 A ASP 88 n 88 ASP 88 A GLY 89 n 89 GLY 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A GLU 92 n 92 GLU 92 A ARG 93 n 93 ARG 93 A PRO 94 n 94 PRO 94 A LEU 95 n 95 LEU 95 A LEU 96 n 96 LEU 96 A LEU 97 n 97 LEU 97 A PHE 98 n 98 PHE 98 A PRO 99 n 99 PRO 99 A ALA 100 n 100 ALA 100 A VAL 101 n 101 VAL 101 A ALA 102 n 102 ALA 102 A MET 103 n 103 MET 103 A VAL 104 n 104 VAL 104 A ARG 105 n 105 ARG 105 A GLY 106 n 106 GLY 106 A SER 107 n 107 SER 107 A ILE 108 n 108 ILE 108 A LEU 109 n 109 LEU 109 A GLY 110 n 110 GLY 110 A ARG 111 n 111 ARG 111 A ASP 112 n 112 ASP 112 A CYS 113 n 113 CYS 113 A LEU 114 n 114 LEU 114 A GLN 115 n 115 GLN 115 A GLY 116 n 116 GLY 116 A LEU 117 n 117 LEU 117 A GLY 118 n 118 GLY 118 A LEU 119 n 119 LEU 119 A ARG 120 n 120 ARG 120 A LEU 121 n 121 LEU 121 A THR 122 n 122 THR 122 A ASN 123 n 123 ASN 123 A LEU 124 n 124 LEU 124 A LEU 1 n 1 LEU 1 B ALA 2 n 2 ALA 2 B MET 3 n 3 MET 3 B THR 4 n 4 THR 4 B MET 5 n 5 MET 5 B GLU 6 n 6 GLU 6 B HIS 7 n 7 HIS 7 B LYS 8 n 8 LYS 8 B ASP 9 n 9 ASP 9 B ARG 10 n 10 ARG 10 B PRO 11 n 11 PRO 11 B LEU 12 n 12 LEU 12 B VAL 13 n 13 VAL 13 B ARG 14 n 14 ARG 14 B VAL 15 n 15 VAL 15 B ILE 16 n 16 ILE 16 B LEU 17 n 17 LEU 17 B THR 18 n 18 THR 18 B ASN 19 n 19 ASN 19 B THR 20 n 20 THR 20 B GLY 21 n 21 GLY 21 B SER 22 n 22 SER 22 B HIS 23 n 23 HIS 23 B PRO 24 n 24 PRO 24 B VAL 25 n 25 VAL 25 B LYS 26 n 26 LYS 26 B GLN 27 n 27 GLN 27 B ARG 28 n 28 ARG 28 B SER 29 n 29 SER 29 B VAL 30 n 30 VAL 30 B TYR 31 n 31 TYR 31 B ILE 32 n 32 ILE 32 B THR 33 n 33 THR 33 B ALA 34 n 34 ALA 34 B LEU 35 n 35 LEU 35 B LEU 36 n 36 LEU 36 B ASP 37 n 37 ASP 37 B SER 38 n 38 SER 38 B GLY 39 n 39 GLY 39 B ALA 40 n 40 ALA 40 B ASP 41 n 41 ASP 41 B ILE 42 n 42 ILE 42 B THR 43 n 43 THR 43 B ILE 44 n 44 ILE 44 B ILE 45 n 45 ILE 45 B SER 46 n 46 SER 46 B GLU 47 n 47 GLU 47 B GLU 48 n 48 GLU 48 B ASP 49 n 49 ASP 49 B TRP 50 n 50 TRP 50 B PRO 51 n 51 PRO 51 B THR 52 n 52 THR 52 B ASP 53 n 53 ASP 53 B TRP 54 n 54 TRP 54 B PRO 55 n 55 PRO 55 B VAL 56 n 56 VAL 56 B MET 57 n 57 MET 57 B GLU 58 n 58 GLU 58 B n 59 59 B n 60 60 B n 61 61 B n 62 62 B n 63 63 B n 64 64 B n 65 65 B n 66 66 B n 67 67 B n 68 68 B n 69 69 B n 70 70 B n 71 71 B PRO 72 n 72 PRO 72 B MET 73 n 73 MET 73 B ARG 74 n 74 ARG 74 B LYS 75 n 75 LYS 75 B SER 76 n 76 SER 76 B ARG 77 n 77 ARG 77 B ASP 78 n 78 ASP 78 B MET 79 n 79 MET 79 B ILE 80 n 80 ILE 80 B GLU 81 n 81 GLU 81 B VAL 82 n 82 VAL 82 B GLY 83 n 83 GLY 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B ASN 86 n 86 ASN 86 B ARG 87 n 87 ARG 87 B ASP 88 n 88 ASP 88 B GLY 89 n 89 GLY 89 B SER 90 n 90 SER 90 B LEU 91 n 91 LEU 91 B GLU 92 n 92 GLU 92 B ARG 93 n 93 ARG 93 B PRO 94 n 94 PRO 94 B LEU 95 n 95 LEU 95 B LEU 96 n 96 LEU 96 B LEU 97 n 97 LEU 97 B PHE 98 n 98 PHE 98 B PRO 99 n 99 PRO 99 B ALA 100 n 100 ALA 100 B VAL 101 n 101 VAL 101 B ALA 102 n 102 ALA 102 B MET 103 n 103 MET 103 B VAL 104 n 104 VAL 104 B ARG 105 n 105 ARG 105 B GLY 106 n 106 GLY 106 B SER 107 n 107 SER 107 B ILE 108 n 108 ILE 108 B LEU 109 n 109 LEU 109 B GLY 110 n 110 GLY 110 B ARG 111 n 111 ARG 111 B ASP 112 n 112 ASP 112 B CYS 113 n 113 CYS 113 B LEU 114 n 114 LEU 114 B GLN 115 n 115 GLN 115 B GLY 116 n 116 GLY 116 B LEU 117 n 117 LEU 117 B GLY 118 n 118 GLY 118 B LEU 119 n 119 LEU 119 B ARG 120 n 120 ARG 120 B LEU 121 n 121 LEU 121 B THR 122 n 122 THR 122 B ASN 123 n 123 ASN 123 B LEU 124 n 124 LEU 124 B author_and_software_defined_assembly PISA 2 dimeric 2890 -7 11990 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B HOH 142 D HOH 1 A ALA 60 A ALA 60 1 Y 1 A ASN 61 A ASN 61 1 Y 1 A PRO 62 A PRO 62 1 Y 1 A GLN 63 A GLN 63 1 Y 1 A ILE 64 A ILE 64 1 Y 1 A HIS 65 A HIS 65 1 Y 1 A GLY 66 A GLY 66 1 Y 1 A ILE 67 A ILE 67 1 Y 1 A GLY 68 A GLY 68 1 Y 1 A GLY 69 A GLY 69 1 Y 1 A GLY 70 A GLY 70 1 Y 1 A ILE 71 A ILE 71 1 Y 1 B ALA 59 B ALA 59 1 Y 1 B ALA 60 B ALA 60 1 Y 1 B ASN 61 B ASN 61 1 Y 1 B PRO 62 B PRO 62 1 Y 1 B GLN 63 B GLN 63 1 Y 1 B ILE 64 B ILE 64 1 Y 1 B HIS 65 B HIS 65 1 Y 1 B GLY 66 B GLY 66 1 Y 1 B ILE 67 B ILE 67 1 Y 1 B GLY 68 B GLY 68 1 Y 1 B GLY 69 B GLY 69 1 Y 1 B GLY 70 B GLY 70 1 Y 1 B ILE 71 B ILE 71 1 Y 1 5.33 0.50 120.30 125.63 A A A NE CZ NH1 ARG ARG ARG 10 10 10 N 1 -6.12 0.50 120.30 114.18 A A A NE CZ NH2 ARG ARG ARG 10 10 10 N 1 5.67 0.90 118.30 123.97 A A A CB CG OD1 ASP ASP ASP 49 49 49 N 1 3.58 0.50 120.30 123.88 A A A NE CZ NH2 ARG ARG ARG 77 77 77 N 1 -6.57 0.50 120.30 113.73 A A A NE CZ NH2 ARG ARG ARG 93 93 93 N 1 9.10 1.40 123.60 132.70 A A A CD NE CZ ARG ARG ARG 105 105 105 N 1 7.05 0.50 120.30 127.35 A A A NE CZ NH1 ARG ARG ARG 105 105 105 N 1 3.12 0.50 120.30 123.42 A A A NE CZ NH1 ARG ARG ARG 111 111 111 N 1 3.38 0.50 120.30 123.68 A A A NE CZ NH1 ARG ARG ARG 120 120 120 N 1 -3.73 0.50 120.30 116.57 B B B NE CZ NH1 ARG ARG ARG 10 10 10 N 1 3.09 0.50 120.30 123.39 B B B NE CZ NH2 ARG ARG ARG 28 28 28 N 1 6.77 0.90 118.30 125.07 B B B CB CG OD1 ASP ASP ASP 41 41 41 N 1 -3.85 0.50 120.30 116.45 B B B NE CZ NH2 ARG ARG ARG 74 74 74 N 1 6.30 0.50 120.30 126.60 B B B NE CZ NH1 ARG ARG ARG 77 77 77 N 1 -4.87 0.50 120.30 115.43 B B B NE CZ NH2 ARG ARG ARG 77 77 77 N 1 9.36 0.90 118.30 127.66 B B B CB CG OD1 ASP ASP ASP 78 78 78 N 1 5.64 0.50 120.30 125.94 B B B NE CZ NH1 ARG ARG ARG 93 93 93 N 1 -4.13 0.50 120.30 116.17 B B B NE CZ NH2 ARG ARG ARG 93 93 93 N 1 3.34 0.50 120.30 123.64 B B B NE CZ NH1 ARG ARG ARG 105 105 105 N 1 4.17 0.50 120.30 124.47 B B B NE CZ NH1 ARG ARG ARG 111 111 111 N 1 -4.80 0.50 120.30 115.50 B B B NE CZ NH2 ARG ARG ARG 111 111 111 N 1 -3.64 0.50 120.30 116.66 B B B NE CZ NH2 ARG ARG ARG 120 120 120 N THE SG ATOMS OF CYS A 113 AND CYS B 113 HAVE BEEN REFINED IN TWO ALTERNATE POSITIONS WITH AN OCCUPANCY OF 0.5 FOR EACH POSITION. 0.1720000 2.2 5.0 17283 1 2.2 5.0 133 1874 0 0 1741 0.018 0.030 0.034 0.040 0.034 0.050 0.828 1.000 1.491 2.000 1.573 1.500 2.627 3.000 0.015 0.030 0.206 0.300 0.199 0.500 0.210 0.500 0.190 0.500 refinement PROLSQ STRUCTURAL STUDIES OF THE RETROVIRAL PROTEINASE FROM AVIAN MYELOBLASTOSIS ASSOCIATED VIRUS 1 N N 1 N N 2 N N 2 N N THE TRANSFORMATION PRESENTED IN THE *MTRIX1* RECORDS BELOW WILL YIELD THE COORDINATES OF CHAIN *B* WHEN APPLIED TO THE COORDINATES OF CHAIN *A*. A SER 46 A SER 46 HELX_P A TRP 50 A TRP 50 1 H1A 5 A GLY 110 A GLY 110 HELX_P A GLY 118 A GLY 118 1 H2A 9 B SER 46 B SER 46 HELX_P B TRP 50 B TRP 50 1 H1B 5 B GLY 110 B GLY 110 HELX_P B GLY 118 B GLY 118 1 H2B 9 HYDROLASE(ASPARTIC PROTEINASE) HYDROLASE(ASPARTIC PROTEINASE) given -0.063470 0.572880 -0.817180 0.572910 -0.649550 -0.499860 -0.817160 -0.499900 -0.286980 37.94168 86.01433 103.78830 GAG_AVIMA UNP 1 1 P26315 LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL 1 124 1MVP 1 124 P26315 A 1 1 124 1 124 1MVP 1 124 P26315 B 1 1 124 9 9 4 anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PRO 55 A PRO 55 A GLU 58 A GLU 58 A MET 73 A MET 73 A SER 76 A SER 76 A PRO 99 A PRO 99 A ALA 102 A ALA 102 A ILE 42 A ILE 42 A SER 46 A SER 46 A GLY 106 A GLY 106 A GLY 110 A GLY 110 A ARG 28 A ARG 28 A ASP 37 A ASP 37 A PRO 11 A PRO 11 A ASN 19 A ASN 19 A MET 79 A MET 79 A ASN 86 A ASN 86 A GLY 89 A GLY 89 A LEU 97 A LEU 97 B PRO 55 B PRO 55 B GLU 58 B GLU 58 B MET 73 B MET 73 B SER 76 B SER 76 B PRO 99 B PRO 99 B ALA 102 B ALA 102 B ILE 42 B ILE 42 B SER 46 B SER 46 B GLY 106 B GLY 106 B GLY 110 B GLY 110 B ARG 28 B ARG 28 B ASP 37 B ASP 37 B PRO 11 B PRO 11 B ASN 19 B ASN 19 B MET 79 B MET 79 B ASN 86 B ASN 86 B GLY 89 B GLY 89 B LEU 97 B LEU 97 A LEU 1 A LEU 1 A MET 5 A MET 5 B LEU 119 B LEU 119 B ASN 123 B ASN 123 A LEU 119 A LEU 119 A ASN 123 A ASN 123 B LEU 1 B LEU 1 B MET 5 B MET 5 CATALYTIC RESIDUES Author 22 A LEU 35 A LEU 35 22 1_555 A LEU 36 A LEU 36 22 1_555 A ASP 37 A ASP 37 22 1_555 A SER 38 A SER 38 22 1_555 A GLY 39 A GLY 39 22 1_555 A ALA 40 A ALA 40 22 1_555 A ASP 41 A ASP 41 22 1_555 A ILE 42 A ILE 42 22 1_555 A THR 43 A THR 43 22 1_555 A ARG 105 A ARG 105 22 1_555 A ILE 108 A ILE 108 22 1_555 B LEU 35 B LEU 35 22 1_555 B LEU 36 B LEU 36 22 1_555 B ASP 37 B ASP 37 22 1_555 B SER 38 B SER 38 22 1_555 B GLY 39 B GLY 39 22 1_555 B ALA 40 B ALA 40 22 1_555 B ASP 41 B ASP 41 22 1_555 B ILE 42 B ILE 42 22 1_555 B THR 43 B THR 43 22 1_555 B ARG 105 B ARG 105 22 1_555 B ILE 108 B ILE 108 22 1_555 152 P 31 2 1