0.011246
0.006493
0.000000
0.000000
0.012990
0.000000
0.000000
0.000000
0.012692
0.00000
0.00000
0.00000
Ohlendorf, D.H.
Foundling, S.I.
Salemme, F.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
88.920
88.920
78.790
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Proteins
PSFGEY
0867
0887-3585
14
382
391
10.1002/prot.340140307
1332025
Structural studies of the retroviral proteinase from avian myeloblastosis associated virus.
1992
10.2210/pdb1mvp/pdb
pdb_00001mvp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
13611.836
MYELOBLASTOSIS ASSOCIATED VIRAL PROTEASE
3.4.23.-
2
man
polymer
18.015
water
133
nat
water
no
no
LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI
EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL
LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI
EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
sample
11960
Avian myeloblastosis-associated virus
3.30
62.74
pdbx_database_status
struct_conf
struct_conf_type
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Database references
1
0
1992-01-15
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
1
4
2024-02-14
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
1990-09-07
REL
HOH
water
HOH
1
2
HOH
HOH
125
A
HOH
2
2
HOH
HOH
126
A
HOH
3
2
HOH
HOH
127
A
HOH
4
2
HOH
HOH
128
A
HOH
5
2
HOH
HOH
129
A
HOH
6
2
HOH
HOH
130
A
HOH
7
2
HOH
HOH
131
A
HOH
8
2
HOH
HOH
132
A
HOH
10
2
HOH
HOH
133
A
HOH
11
2
HOH
HOH
134
A
HOH
12
2
HOH
HOH
135
A
HOH
13
2
HOH
HOH
136
A
HOH
14
2
HOH
HOH
137
A
HOH
15
2
HOH
HOH
138
A
HOH
16
2
HOH
HOH
139
A
HOH
17
2
HOH
HOH
140
A
HOH
18
2
HOH
HOH
141
A
HOH
19
2
HOH
HOH
142
A
HOH
20
2
HOH
HOH
143
A
HOH
21
2
HOH
HOH
144
A
HOH
22
2
HOH
HOH
145
A
HOH
24
2
HOH
HOH
146
A
HOH
25
2
HOH
HOH
147
A
HOH
26
2
HOH
HOH
148
A
HOH
27
2
HOH
HOH
149
A
HOH
28
2
HOH
HOH
150
A
HOH
29
2
HOH
HOH
151
A
HOH
30
2
HOH
HOH
152
A
HOH
31
2
HOH
HOH
153
A
HOH
32
2
HOH
HOH
154
A
HOH
33
2
HOH
HOH
155
A
HOH
34
2
HOH
HOH
156
A
HOH
35
2
HOH
HOH
157
A
HOH
36
2
HOH
HOH
158
A
HOH
37
2
HOH
HOH
159
A
HOH
38
2
HOH
HOH
160
A
HOH
39
2
HOH
HOH
161
A
HOH
40
2
HOH
HOH
162
A
HOH
41
2
HOH
HOH
163
A
HOH
42
2
HOH
HOH
164
A
HOH
43
2
HOH
HOH
165
A
HOH
44
2
HOH
HOH
166
A
HOH
45
2
HOH
HOH
167
A
HOH
46
2
HOH
HOH
168
A
HOH
47
2
HOH
HOH
169
A
HOH
48
2
HOH
HOH
170
A
HOH
49
2
HOH
HOH
171
A
HOH
50
2
HOH
HOH
172
A
HOH
51
2
HOH
HOH
173
A
HOH
52
2
HOH
HOH
174
A
HOH
54
2
HOH
HOH
175
A
HOH
55
2
HOH
HOH
176
A
HOH
56
2
HOH
HOH
177
A
HOH
57
2
HOH
HOH
178
A
HOH
58
2
HOH
HOH
179
A
HOH
59
2
HOH
HOH
180
A
HOH
132
2
HOH
HOH
181
A
HOH
9
2
HOH
HOH
125
B
HOH
23
2
HOH
HOH
126
B
HOH
53
2
HOH
HOH
127
B
HOH
60
2
HOH
HOH
128
B
HOH
61
2
HOH
HOH
129
B
HOH
62
2
HOH
HOH
130
B
HOH
63
2
HOH
HOH
131
B
HOH
64
2
HOH
HOH
132
B
HOH
65
2
HOH
HOH
133
B
HOH
66
2
HOH
HOH
134
B
HOH
67
2
HOH
HOH
135
B
HOH
68
2
HOH
HOH
136
B
HOH
69
2
HOH
HOH
137
B
HOH
70
2
HOH
HOH
138
B
HOH
71
2
HOH
HOH
139
B
HOH
72
2
HOH
HOH
140
B
HOH
73
2
HOH
HOH
141
B
HOH
74
2
HOH
HOH
142
B
HOH
75
2
HOH
HOH
143
B
HOH
76
2
HOH
HOH
144
B
HOH
77
2
HOH
HOH
145
B
HOH
78
2
HOH
HOH
146
B
HOH
79
2
HOH
HOH
147
B
HOH
80
2
HOH
HOH
148
B
HOH
81
2
HOH
HOH
149
B
HOH
82
2
HOH
HOH
150
B
HOH
83
2
HOH
HOH
151
B
HOH
84
2
HOH
HOH
152
B
HOH
85
2
HOH
HOH
153
B
HOH
86
2
HOH
HOH
154
B
HOH
87
2
HOH
HOH
155
B
HOH
88
2
HOH
HOH
156
B
HOH
89
2
HOH
HOH
157
B
HOH
90
2
HOH
HOH
158
B
HOH
91
2
HOH
HOH
159
B
HOH
92
2
HOH
HOH
160
B
HOH
93
2
HOH
HOH
161
B
HOH
94
2
HOH
HOH
162
B
HOH
95
2
HOH
HOH
163
B
HOH
96
2
HOH
HOH
164
B
HOH
97
2
HOH
HOH
165
B
HOH
98
2
HOH
HOH
166
B
HOH
99
2
HOH
HOH
167
B
HOH
100
2
HOH
HOH
168
B
HOH
101
2
HOH
HOH
169
B
HOH
102
2
HOH
HOH
170
B
HOH
103
2
HOH
HOH
171
B
HOH
104
2
HOH
HOH
172
B
HOH
105
2
HOH
HOH
173
B
HOH
106
2
HOH
HOH
174
B
HOH
107
2
HOH
HOH
175
B
HOH
108
2
HOH
HOH
176
B
HOH
109
2
HOH
HOH
177
B
HOH
110
2
HOH
HOH
178
B
HOH
111
2
HOH
HOH
179
B
HOH
112
2
HOH
HOH
180
B
HOH
113
2
HOH
HOH
181
B
HOH
114
2
HOH
HOH
182
B
HOH
115
2
HOH
HOH
183
B
HOH
116
2
HOH
HOH
184
B
HOH
117
2
HOH
HOH
185
B
HOH
118
2
HOH
HOH
186
B
HOH
119
2
HOH
HOH
187
B
HOH
120
2
HOH
HOH
188
B
HOH
121
2
HOH
HOH
189
B
HOH
122
2
HOH
HOH
190
B
HOH
123
2
HOH
HOH
191
B
HOH
124
2
HOH
HOH
192
B
HOH
125
2
HOH
HOH
193
B
HOH
126
2
HOH
HOH
194
B
HOH
127
2
HOH
HOH
195
B
HOH
128
2
HOH
HOH
196
B
HOH
129
2
HOH
HOH
197
B
HOH
130
2
HOH
HOH
198
B
HOH
131
2
HOH
HOH
199
B
HOH
133
2
HOH
HOH
200
B
LEU
1
n
1
LEU
1
A
ALA
2
n
2
ALA
2
A
MET
3
n
3
MET
3
A
THR
4
n
4
THR
4
A
MET
5
n
5
MET
5
A
GLU
6
n
6
GLU
6
A
HIS
7
n
7
HIS
7
A
LYS
8
n
8
LYS
8
A
ASP
9
n
9
ASP
9
A
ARG
10
n
10
ARG
10
A
PRO
11
n
11
PRO
11
A
LEU
12
n
12
LEU
12
A
VAL
13
n
13
VAL
13
A
ARG
14
n
14
ARG
14
A
VAL
15
n
15
VAL
15
A
ILE
16
n
16
ILE
16
A
LEU
17
n
17
LEU
17
A
THR
18
n
18
THR
18
A
ASN
19
n
19
ASN
19
A
THR
20
n
20
THR
20
A
GLY
21
n
21
GLY
21
A
SER
22
n
22
SER
22
A
HIS
23
n
23
HIS
23
A
PRO
24
n
24
PRO
24
A
VAL
25
n
25
VAL
25
A
LYS
26
n
26
LYS
26
A
GLN
27
n
27
GLN
27
A
ARG
28
n
28
ARG
28
A
SER
29
n
29
SER
29
A
VAL
30
n
30
VAL
30
A
TYR
31
n
31
TYR
31
A
ILE
32
n
32
ILE
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
LEU
36
n
36
LEU
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
GLY
39
n
39
GLY
39
A
ALA
40
n
40
ALA
40
A
ASP
41
n
41
ASP
41
A
ILE
42
n
42
ILE
42
A
THR
43
n
43
THR
43
A
ILE
44
n
44
ILE
44
A
ILE
45
n
45
ILE
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
TRP
50
n
50
TRP
50
A
PRO
51
n
51
PRO
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TRP
54
n
54
TRP
54
A
PRO
55
n
55
PRO
55
A
VAL
56
n
56
VAL
56
A
MET
57
n
57
MET
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
n
65
65
A
n
66
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
n
71
71
A
PRO
72
n
72
PRO
72
A
MET
73
n
73
MET
73
A
ARG
74
n
74
ARG
74
A
LYS
75
n
75
LYS
75
A
SER
76
n
76
SER
76
A
ARG
77
n
77
ARG
77
A
ASP
78
n
78
ASP
78
A
MET
79
n
79
MET
79
A
ILE
80
n
80
ILE
80
A
GLU
81
n
81
GLU
81
A
VAL
82
n
82
VAL
82
A
GLY
83
n
83
GLY
83
A
VAL
84
n
84
VAL
84
A
ILE
85
n
85
ILE
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ASP
88
n
88
ASP
88
A
GLY
89
n
89
GLY
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
GLU
92
n
92
GLU
92
A
ARG
93
n
93
ARG
93
A
PRO
94
n
94
PRO
94
A
LEU
95
n
95
LEU
95
A
LEU
96
n
96
LEU
96
A
LEU
97
n
97
LEU
97
A
PHE
98
n
98
PHE
98
A
PRO
99
n
99
PRO
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
ALA
102
n
102
ALA
102
A
MET
103
n
103
MET
103
A
VAL
104
n
104
VAL
104
A
ARG
105
n
105
ARG
105
A
GLY
106
n
106
GLY
106
A
SER
107
n
107
SER
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
GLY
110
n
110
GLY
110
A
ARG
111
n
111
ARG
111
A
ASP
112
n
112
ASP
112
A
CYS
113
n
113
CYS
113
A
LEU
114
n
114
LEU
114
A
GLN
115
n
115
GLN
115
A
GLY
116
n
116
GLY
116
A
LEU
117
n
117
LEU
117
A
GLY
118
n
118
GLY
118
A
LEU
119
n
119
LEU
119
A
ARG
120
n
120
ARG
120
A
LEU
121
n
121
LEU
121
A
THR
122
n
122
THR
122
A
ASN
123
n
123
ASN
123
A
LEU
124
n
124
LEU
124
A
LEU
1
n
1
LEU
1
B
ALA
2
n
2
ALA
2
B
MET
3
n
3
MET
3
B
THR
4
n
4
THR
4
B
MET
5
n
5
MET
5
B
GLU
6
n
6
GLU
6
B
HIS
7
n
7
HIS
7
B
LYS
8
n
8
LYS
8
B
ASP
9
n
9
ASP
9
B
ARG
10
n
10
ARG
10
B
PRO
11
n
11
PRO
11
B
LEU
12
n
12
LEU
12
B
VAL
13
n
13
VAL
13
B
ARG
14
n
14
ARG
14
B
VAL
15
n
15
VAL
15
B
ILE
16
n
16
ILE
16
B
LEU
17
n
17
LEU
17
B
THR
18
n
18
THR
18
B
ASN
19
n
19
ASN
19
B
THR
20
n
20
THR
20
B
GLY
21
n
21
GLY
21
B
SER
22
n
22
SER
22
B
HIS
23
n
23
HIS
23
B
PRO
24
n
24
PRO
24
B
VAL
25
n
25
VAL
25
B
LYS
26
n
26
LYS
26
B
GLN
27
n
27
GLN
27
B
ARG
28
n
28
ARG
28
B
SER
29
n
29
SER
29
B
VAL
30
n
30
VAL
30
B
TYR
31
n
31
TYR
31
B
ILE
32
n
32
ILE
32
B
THR
33
n
33
THR
33
B
ALA
34
n
34
ALA
34
B
LEU
35
n
35
LEU
35
B
LEU
36
n
36
LEU
36
B
ASP
37
n
37
ASP
37
B
SER
38
n
38
SER
38
B
GLY
39
n
39
GLY
39
B
ALA
40
n
40
ALA
40
B
ASP
41
n
41
ASP
41
B
ILE
42
n
42
ILE
42
B
THR
43
n
43
THR
43
B
ILE
44
n
44
ILE
44
B
ILE
45
n
45
ILE
45
B
SER
46
n
46
SER
46
B
GLU
47
n
47
GLU
47
B
GLU
48
n
48
GLU
48
B
ASP
49
n
49
ASP
49
B
TRP
50
n
50
TRP
50
B
PRO
51
n
51
PRO
51
B
THR
52
n
52
THR
52
B
ASP
53
n
53
ASP
53
B
TRP
54
n
54
TRP
54
B
PRO
55
n
55
PRO
55
B
VAL
56
n
56
VAL
56
B
MET
57
n
57
MET
57
B
GLU
58
n
58
GLU
58
B
n
59
59
B
n
60
60
B
n
61
61
B
n
62
62
B
n
63
63
B
n
64
64
B
n
65
65
B
n
66
66
B
n
67
67
B
n
68
68
B
n
69
69
B
n
70
70
B
n
71
71
B
PRO
72
n
72
PRO
72
B
MET
73
n
73
MET
73
B
ARG
74
n
74
ARG
74
B
LYS
75
n
75
LYS
75
B
SER
76
n
76
SER
76
B
ARG
77
n
77
ARG
77
B
ASP
78
n
78
ASP
78
B
MET
79
n
79
MET
79
B
ILE
80
n
80
ILE
80
B
GLU
81
n
81
GLU
81
B
VAL
82
n
82
VAL
82
B
GLY
83
n
83
GLY
83
B
VAL
84
n
84
VAL
84
B
ILE
85
n
85
ILE
85
B
ASN
86
n
86
ASN
86
B
ARG
87
n
87
ARG
87
B
ASP
88
n
88
ASP
88
B
GLY
89
n
89
GLY
89
B
SER
90
n
90
SER
90
B
LEU
91
n
91
LEU
91
B
GLU
92
n
92
GLU
92
B
ARG
93
n
93
ARG
93
B
PRO
94
n
94
PRO
94
B
LEU
95
n
95
LEU
95
B
LEU
96
n
96
LEU
96
B
LEU
97
n
97
LEU
97
B
PHE
98
n
98
PHE
98
B
PRO
99
n
99
PRO
99
B
ALA
100
n
100
ALA
100
B
VAL
101
n
101
VAL
101
B
ALA
102
n
102
ALA
102
B
MET
103
n
103
MET
103
B
VAL
104
n
104
VAL
104
B
ARG
105
n
105
ARG
105
B
GLY
106
n
106
GLY
106
B
SER
107
n
107
SER
107
B
ILE
108
n
108
ILE
108
B
LEU
109
n
109
LEU
109
B
GLY
110
n
110
GLY
110
B
ARG
111
n
111
ARG
111
B
ASP
112
n
112
ASP
112
B
CYS
113
n
113
CYS
113
B
LEU
114
n
114
LEU
114
B
GLN
115
n
115
GLN
115
B
GLY
116
n
116
GLY
116
B
LEU
117
n
117
LEU
117
B
GLY
118
n
118
GLY
118
B
LEU
119
n
119
LEU
119
B
ARG
120
n
120
ARG
120
B
LEU
121
n
121
LEU
121
B
THR
122
n
122
THR
122
B
ASN
123
n
123
ASN
123
B
LEU
124
n
124
LEU
124
B
author_and_software_defined_assembly
PISA
2
dimeric
2890
-7
11990
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
HOH
142
D
HOH
1
A
ALA
60
A
ALA
60
1
Y
1
A
ASN
61
A
ASN
61
1
Y
1
A
PRO
62
A
PRO
62
1
Y
1
A
GLN
63
A
GLN
63
1
Y
1
A
ILE
64
A
ILE
64
1
Y
1
A
HIS
65
A
HIS
65
1
Y
1
A
GLY
66
A
GLY
66
1
Y
1
A
ILE
67
A
ILE
67
1
Y
1
A
GLY
68
A
GLY
68
1
Y
1
A
GLY
69
A
GLY
69
1
Y
1
A
GLY
70
A
GLY
70
1
Y
1
A
ILE
71
A
ILE
71
1
Y
1
B
ALA
59
B
ALA
59
1
Y
1
B
ALA
60
B
ALA
60
1
Y
1
B
ASN
61
B
ASN
61
1
Y
1
B
PRO
62
B
PRO
62
1
Y
1
B
GLN
63
B
GLN
63
1
Y
1
B
ILE
64
B
ILE
64
1
Y
1
B
HIS
65
B
HIS
65
1
Y
1
B
GLY
66
B
GLY
66
1
Y
1
B
ILE
67
B
ILE
67
1
Y
1
B
GLY
68
B
GLY
68
1
Y
1
B
GLY
69
B
GLY
69
1
Y
1
B
GLY
70
B
GLY
70
1
Y
1
B
ILE
71
B
ILE
71
1
Y
1
5.33
0.50
120.30
125.63
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
1
-6.12
0.50
120.30
114.18
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
10
10
10
N
1
5.67
0.90
118.30
123.97
A
A
A
CB
CG
OD1
ASP
ASP
ASP
49
49
49
N
1
3.58
0.50
120.30
123.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
77
77
77
N
1
-6.57
0.50
120.30
113.73
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
9.10
1.40
123.60
132.70
A
A
A
CD
NE
CZ
ARG
ARG
ARG
105
105
105
N
1
7.05
0.50
120.30
127.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
105
105
105
N
1
3.12
0.50
120.30
123.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
111
111
111
N
1
3.38
0.50
120.30
123.68
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
-3.73
0.50
120.30
116.57
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
1
3.09
0.50
120.30
123.39
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
28
28
28
N
1
6.77
0.90
118.30
125.07
B
B
B
CB
CG
OD1
ASP
ASP
ASP
41
41
41
N
1
-3.85
0.50
120.30
116.45
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
74
74
74
N
1
6.30
0.50
120.30
126.60
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
77
77
77
N
1
-4.87
0.50
120.30
115.43
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
77
77
77
N
1
9.36
0.90
118.30
127.66
B
B
B
CB
CG
OD1
ASP
ASP
ASP
78
78
78
N
1
5.64
0.50
120.30
125.94
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
93
93
93
N
1
-4.13
0.50
120.30
116.17
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
3.34
0.50
120.30
123.64
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
105
105
105
N
1
4.17
0.50
120.30
124.47
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
111
111
111
N
1
-4.80
0.50
120.30
115.50
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
111
111
111
N
1
-3.64
0.50
120.30
116.66
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
120
120
120
N
THE SG ATOMS OF CYS A 113 AND CYS B 113 HAVE BEEN REFINED
IN TWO ALTERNATE POSITIONS WITH AN OCCUPANCY OF 0.5 FOR
EACH POSITION.
0.1720000
2.2
5.0
17283
1
2.2
5.0
133
1874
0
0
1741
0.018
0.030
0.034
0.040
0.034
0.050
0.828
1.000
1.491
2.000
1.573
1.500
2.627
3.000
0.015
0.030
0.206
0.300
0.199
0.500
0.210
0.500
0.190
0.500
refinement
PROLSQ
STRUCTURAL STUDIES OF THE RETROVIRAL PROTEINASE FROM AVIAN MYELOBLASTOSIS ASSOCIATED VIRUS
1
N
N
1
N
N
2
N
N
2
N
N
THE TRANSFORMATION PRESENTED IN THE *MTRIX1* RECORDS BELOW
WILL YIELD THE COORDINATES OF CHAIN *B* WHEN APPLIED TO
THE COORDINATES OF CHAIN *A*.
A
SER
46
A
SER
46
HELX_P
A
TRP
50
A
TRP
50
1
H1A
5
A
GLY
110
A
GLY
110
HELX_P
A
GLY
118
A
GLY
118
1
H2A
9
B
SER
46
B
SER
46
HELX_P
B
TRP
50
B
TRP
50
1
H1B
5
B
GLY
110
B
GLY
110
HELX_P
B
GLY
118
B
GLY
118
1
H2B
9
HYDROLASE(ASPARTIC PROTEINASE)
HYDROLASE(ASPARTIC PROTEINASE)
given
-0.063470
0.572880
-0.817180
0.572910
-0.649550
-0.499860
-0.817160
-0.499900
-0.286980
37.94168
86.01433
103.78830
GAG_AVIMA
UNP
1
1
P26315
LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMI
EVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL
1
124
1MVP
1
124
P26315
A
1
1
124
1
124
1MVP
1
124
P26315
B
1
1
124
9
9
4
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PRO
55
A
PRO
55
A
GLU
58
A
GLU
58
A
MET
73
A
MET
73
A
SER
76
A
SER
76
A
PRO
99
A
PRO
99
A
ALA
102
A
ALA
102
A
ILE
42
A
ILE
42
A
SER
46
A
SER
46
A
GLY
106
A
GLY
106
A
GLY
110
A
GLY
110
A
ARG
28
A
ARG
28
A
ASP
37
A
ASP
37
A
PRO
11
A
PRO
11
A
ASN
19
A
ASN
19
A
MET
79
A
MET
79
A
ASN
86
A
ASN
86
A
GLY
89
A
GLY
89
A
LEU
97
A
LEU
97
B
PRO
55
B
PRO
55
B
GLU
58
B
GLU
58
B
MET
73
B
MET
73
B
SER
76
B
SER
76
B
PRO
99
B
PRO
99
B
ALA
102
B
ALA
102
B
ILE
42
B
ILE
42
B
SER
46
B
SER
46
B
GLY
106
B
GLY
106
B
GLY
110
B
GLY
110
B
ARG
28
B
ARG
28
B
ASP
37
B
ASP
37
B
PRO
11
B
PRO
11
B
ASN
19
B
ASN
19
B
MET
79
B
MET
79
B
ASN
86
B
ASN
86
B
GLY
89
B
GLY
89
B
LEU
97
B
LEU
97
A
LEU
1
A
LEU
1
A
MET
5
A
MET
5
B
LEU
119
B
LEU
119
B
ASN
123
B
ASN
123
A
LEU
119
A
LEU
119
A
ASN
123
A
ASN
123
B
LEU
1
B
LEU
1
B
MET
5
B
MET
5
CATALYTIC RESIDUES
Author
22
A
LEU
35
A
LEU
35
22
1_555
A
LEU
36
A
LEU
36
22
1_555
A
ASP
37
A
ASP
37
22
1_555
A
SER
38
A
SER
38
22
1_555
A
GLY
39
A
GLY
39
22
1_555
A
ALA
40
A
ALA
40
22
1_555
A
ASP
41
A
ASP
41
22
1_555
A
ILE
42
A
ILE
42
22
1_555
A
THR
43
A
THR
43
22
1_555
A
ARG
105
A
ARG
105
22
1_555
A
ILE
108
A
ILE
108
22
1_555
B
LEU
35
B
LEU
35
22
1_555
B
LEU
36
B
LEU
36
22
1_555
B
ASP
37
B
ASP
37
22
1_555
B
SER
38
B
SER
38
22
1_555
B
GLY
39
B
GLY
39
22
1_555
B
ALA
40
B
ALA
40
22
1_555
B
ASP
41
B
ASP
41
22
1_555
B
ILE
42
B
ILE
42
22
1_555
B
THR
43
B
THR
43
22
1_555
B
ARG
105
B
ARG
105
22
1_555
B
ILE
108
B
ILE
108
22
1_555
152
P 31 2 1