1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rawat, U.B.
Zavialov, A.V.
Sengupta, J.
Valle, M.
Grassucci, R.A.
Linde, J.
Vestergaard, B.
Ehrenberg, M.
Frank, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
S
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
N
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
S
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
R
C
N
416
N
O
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
O
N
453
N
P
N
454
N
O
N
455
N
O
N
456
N
O
N
457
N
C
N
458
R
C
N
459
N
O
N
460
S
C
N
461
N
O
N
462
R
C
N
463
N
O
N
464
R
C
N
465
N
N
N
466
N
C
N
467
N
O
N
468
N
N
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
N
491
N
C
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
UK
Nature
NATUAS
0006
0028-0836
421
87
90
10.1038/nature01224
12511960
A cryo-electron microscopic study of ribosome-bound termination factor RF2
2003
US
Science
SCIEAS
0038
0036-8075
292
883
896
Crystal structure of the ribosome at 5.5 A resolution
2001
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
106
233
241
The path of messenger RNA through the ribosome
2001
10.2210/pdb1mvr/pdb
pdb_00001mvr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
METHOD--Manual
OTHER
REAL
1GIX
1
1GIX
PDB
experimental model
1GIY
2
1GIY
PDB
experimental model
2.82
SPIDER package
1MVR
TMV
Reference Bases Alignment
18199
12.8
POINT
polymix buffer
polymix buffer
7.5
Wiener filtering of 3D-maps
70S ribosome
0
RIBOSOME
PARTICLE
1
1
SINGLE PARTICLE
20
KODAK SO-163 FILM
200
49696
2001-11-08
FIELD EMISSION GUN
FLOOD BEAM
FEI TECNAI F20
BRIGHT FIELD
2.0
4500
2020
50000
1
93
0
0
1MVR
C1
MODEL FITTING
O
RECONSTRUCTION
1
SPIDER
32
NO
NO
NO
YES
ETHANE
Rapid-freezing in liquid ethane
1MVR
HOMEMADE PLUNGER
based on coordinates from 1GIX, 30S Subunit
873.540
mRNA, triplet codon (A-site)
1
nat
polymer
based on coordinates from 1GIX, 30S Subunit
14465.605
Helix 34 of 16S rRNA
1
nat
polymer
based on coordinates from 1GIX, 30S Subunit
31208.639
Helix 44 of 16S rRNA
1
nat
polymer
based on coordinates from 1GIY, 50S Subunit
6077.673
Helix 69 of 23S rRNA
1
nat
polymer
based on coordinates from 1GIY, 50S Subunit
18996.311
Helix 89 of 23S rRNA
1
nat
polymer
based on coordinates from 1GIY, 50S Subunit
8706.199
Helix 93 of 23S rRNA
1
nat
polymer
based on coordinates from 1GIX, 30S Subunit
14920.754
30S RIBOSOMAL PROTEIN S12
1
nat
polymer
based on coordinates from 1GIY, 50S Subunit
14980.726
50S ribosomal protein L11
1
nat
polymer
no
no
UUU
UUU
1
polyribonucleotide
no
no
AGGUGCUGCAUGGCCGUCGUCAACGACGUCUGGUCAGCAUGGCCC
AGGUGCUGCAUGGCCGUCGUCAACGACGUCUGGUCAGCAUGGCCC
A
polyribonucleotide
no
no
CGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGAC
UGGGGCGAAGUCGUAA
CGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGAC
UGGGGCGAAGUCGUAA
B
polyribonucleotide
no
no
GGCCGUAACUAUAACGGUC
GGCCGUAACUAUAACGGUC
C
polyribonucleotide
no
no
AUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCGAUGU
AUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCGAUGU
D
polyribonucleotide
no
no
GUUCAGAACGUCGUGAGACAGUUCGGU
GUUCAGAACGUCGUGAGACAGUUCGGU
E
polyribonucleotide
no
no
MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEH
SVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK
MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEH
SVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK
O
polypeptide(L)
no
no
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
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n
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n
n
n
n
n
n
n
n
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
Escherichia
sample
83333
Escherichia coli
Escherichia coli
K12
em_image_scans
em_software
chem_comp_atom
chem_comp_bond
database_2
em_3d_fitting_list
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Data collection
Database references
Refinement description
1
0
2003-04-01
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-07-18
1
4
2024-02-14
_em_software.image_processing_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_em_3d_fitting_list.accession_code
_em_3d_fitting_list.initial_refinement_model_id
_em_3d_fitting_list.source_name
_em_3d_fitting_list.type
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
Crystal structure of the Ribosome at 5.5 A resolution--30S Ribosome subunit,
three tRNA, and mRNA molecules
Crystal structure of the Ribosome at 5.5 A resolution--50S Ribosome subunit,
three tRNA, and mRNA molecules
Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of
RF2 E.coli 70S Ribosome Complex
Polypeptide chain Release Factor 2 (RF2) from E.coli
RCSB
Y
RCSB
2002-09-26
REL
1GIX
PDB
experimental model
1GIY
PDB
experimental model
U
11
n
1
U
11
1
U
12
n
2
U
12
1
U
13
n
3
U
13
1
A
1046
n
1
A
1046
A
G
1047
n
2
G
1047
A
G
1048
n
3
G
1048
A
U
1049
n
4
U
1049
A
G
1050
n
5
G
1050
A
C
1051
n
6
C
1051
A
U
1052
n
7
U
1052
A
G
1053
n
8
G
1053
A
C
1054
n
9
C
1054
A
A
1055
n
10
A
1055
A
U
1056
n
11
U
1056
A
G
1057
n
12
G
1057
A
G
1058
n
13
G
1058
A
C
1059
n
14
C
1059
A
C
1060
n
15
C
1060
A
G
1061
n
16
G
1061
A
U
1062
n
17
U
1062
A
C
1063
n
18
C
1063
A
G
1064
n
19
G
1064
A
U
1065
n
20
U
1065
A
C
1066
n
21
C
1066
A
A
1067
n
22
A
1067
A
A
1188
n
23
A
1188
A
C
1189
n
24
C
1189
A
G
1190
n
25
G
1190
A
A
1191
n
26
A
1191
A
C
1192
n
27
C
1192
A
G
1193
n
28
G
1193
A
U
1194
n
29
U
1194
A
C
1195
n
30
C
1195
A
U
1196
n
31
U
1196
A
G
1197
n
32
G
1197
A
G
1198
n
33
G
1198
A
U
1199
n
34
U
1199
A
C
1200
n
35
C
1200
A
A
1201
n
36
A
1201
A
G
1202
n
37
G
1202
A
C
1203
n
38
C
1203
A
A
1204
n
39
A
1204
A
U
1205
n
40
U
1205
A
G
1206
n
41
G
1206
A
G
1207
n
42
G
1207
A
C
1208
n
43
C
1208
A
C
1209
n
44
C
1209
A
C
1210
n
45
C
1210
A
C
1400
n
1
C
1400
B
G
1401
n
2
G
1401
B
C
1402
n
3
C
1402
B
C
1403
n
4
C
1403
B
C
1404
n
5
C
1404
B
G
1405
n
6
G
1405
B
U
1406
n
7
U
1406
B
C
1407
n
8
C
1407
B
A
1408
n
9
A
1408
B
C
1409
n
10
C
1409
B
G
1410
n
11
G
1410
B
C
1411
n
12
C
1411
B
C
1412
n
13
C
1412
B
A
1413
n
14
A
1413
B
U
1414
n
15
U
1414
B
G
1415
n
16
G
1415
B
G
1416
n
17
G
1416
B
G
1417
n
18
G
1417
B
A
1418
n
19
A
1418
B
G
1419
n
20
G
1419
B
C
1420
n
21
C
1420
B
G
1421
n
22
G
1421
B
G
1422
n
23
G
1422
B
G
1423
n
24
G
1423
B
C
1424
n
25
C
1424
B
U
1425
n
26
U
1425
B
C
1426
n
27
C
1426
B
U
1427
n
28
U
1427
B
A
1428
n
29
A
1428
B
C
1429
n
30
C
1429
B
C
1430
n
31
C
1430
B
C
1431
n
32
C
1431
B
G
1432
n
33
G
1432
B
A
1433
n
34
A
1433
B
A
1434
n
35
A
1434
B
G
1435
n
36
G
1435
B
U
1436
n
37
U
1436
B
C
1437
n
38
C
1437
B
G
1438
n
39
G
1438
B
C
1439
n
40
C
1439
B
C
1440
n
41
C
1440
B
G
1441
n
42
G
1441
B
G
1442
n
43
G
1442
B
G
1443
n
44
G
1443
B
A
1446
n
45
A
1446
B
G
1447
n
46
G
1447
B
C
1448
n
47
C
1448
B
C
1449
n
48
C
1449
B
U
1450
n
49
U
1450
B
A
1451
n
50
A
1451
B
C
1452
n
51
C
1452
B
G
1453
n
52
G
1453
B
G
1454
n
53
G
1454
B
G
1455
n
54
G
1455
B
C
1459
n
55
C
1459
B
A
1460
n
56
A
1460
B
G
1461
n
57
G
1461
B
G
1462
n
58
G
1462
B
C
1463
n
59
C
1463
B
G
1464
n
60
G
1464
B
C
1465
n
61
C
1465
B
C
1466
n
62
C
1466
B
G
1467
n
63
G
1467
B
A
1468
n
64
A
1468
B
G
1469
n
65
G
1469
B
G
1470
n
66
G
1470
B
G
1471
n
67
G
1471
B
U
1472
n
68
U
1472
B
A
1473
n
69
A
1473
B
G
1474
n
70
G
1474
B
G
1475
n
71
G
1475
B
G
1476
n
72
G
1476
B
C
1477
n
73
C
1477
B
C
1478
n
74
C
1478
B
C
1479
n
75
C
1479
B
G
1480
n
76
G
1480
B
U
1481
n
77
U
1481
B
G
1482
n
78
G
1482
B
A
1483
n
79
A
1483
B
C
1484
n
80
C
1484
B
U
1485
n
81
U
1485
B
G
1486
n
82
G
1486
B
G
1487
n
83
G
1487
B
G
1488
n
84
G
1488
B
G
1489
n
85
G
1489
B
C
1490
n
86
C
1490
B
G
1491
n
87
G
1491
B
A
1492
n
88
A
1492
B
A
1493
n
89
A
1493
B
G
1494
n
90
G
1494
B
U
1495
n
91
U
1495
B
C
1496
n
92
C
1496
B
G
1497
n
93
G
1497
B
U
1498
n
94
U
1498
B
A
1499
n
95
A
1499
B
A
1500
n
96
A
1500
B
G
1906
n
1
G
1906
C
G
1907
n
2
G
1907
C
C
1908
n
3
C
1908
C
C
1909
n
4
C
1909
C
G
1910
n
5
G
1910
C
U
1911
n
6
U
1911
C
A
1912
n
7
A
1912
C
A
1913
n
8
A
1913
C
C
1914
n
9
C
1914
C
U
1915
n
10
U
1915
C
A
1916
n
11
A
1916
C
U
1917
n
12
U
1917
C
A
1918
n
13
A
1918
C
A
1919
n
14
A
1919
C
C
1920
n
15
C
1920
C
G
1921
n
16
G
1921
C
G
1922
n
17
G
1922
C
U
1923
n
18
U
1923
C
C
1924
n
19
C
1924
C
A
2448
n
1
A
2448
D
U
2449
n
2
U
2449
D
A
2450
n
3
A
2450
D
A
2451
n
4
A
2451
D
C
2452
n
5
C
2452
D
A
2453
n
6
A
2453
D
G
2454
n
7
G
2454
D
G
2455
n
8
G
2455
D
C
2456
n
9
C
2456
D
U
2457
n
10
U
2457
D
G
2458
n
11
G
2458
D
A
2459
n
12
A
2459
D
U
2460
n
13
U
2460
D
C
2461
n
14
C
2461
D
U
2462
n
15
U
2462
D
C
2463
n
16
C
2463
D
C
2464
n
17
C
2464
D
C
2465
n
18
C
2465
D
C
2466
n
19
C
2466
D
C
2467
n
20
C
2467
D
G
2468
n
21
G
2468
D
A
2469
n
22
A
2469
D
G
2470
n
23
G
2470
D
C
2471
n
24
C
2471
D
G
2472
n
25
G
2472
D
U
2473
n
26
U
2473
D
C
2474
n
27
C
2474
D
C
2475
n
28
C
2475
D
A
2476
n
29
A
2476
D
C
2477
n
30
C
2477
D
A
2478
n
31
A
2478
D
G
2479
n
32
G
2479
D
C
2480
n
33
C
2480
D
G
2481
n
34
G
2481
D
G
2482
n
35
G
2482
D
C
2483
n
36
C
2483
D
G
2484
n
37
G
2484
D
G
2485
n
38
G
2485
D
G
2486
n
39
G
2486
D
G
2487
n
40
G
2487
D
A
2488
n
41
A
2488
D
G
2489
n
42
G
2489
D
G
2490
n
43
G
2490
D
U
2491
n
44
U
2491
D
U
2492
n
45
U
2492
D
U
2493
n
46
U
2493
D
G
2494
n
47
G
2494
D
G
2495
n
48
G
2495
D
C
2496
n
49
C
2496
D
A
2497
n
50
A
2497
D
C
2498
n
51
C
2498
D
C
2499
n
52
C
2499
D
U
2500
n
53
U
2500
D
C
2501
n
54
C
2501
D
G
2502
n
55
G
2502
D
A
2503
n
56
A
2503
D
U
2504
n
57
U
2504
D
G
2505
n
58
G
2505
D
U
2506
n
59
U
2506
D
G
2583
n
1
G
2583
E
U
2584
n
2
U
2584
E
U
2585
n
3
U
2585
E
C
2586
n
4
C
2586
E
A
2587
n
5
A
2587
E
G
2588
n
6
G
2588
E
A
2589
n
7
A
2589
E
A
2590
n
8
A
2590
E
C
2591
n
9
C
2591
E
G
2592
n
10
G
2592
E
U
2593
n
11
U
2593
E
C
2594
n
12
C
2594
E
G
2595
n
13
G
2595
E
U
2596
n
14
U
2596
E
G
2597
n
15
G
2597
E
A
2598
n
16
A
2598
E
G
2599
n
17
G
2599
E
A
2600
n
18
A
2600
E
C
2601
n
19
C
2601
E
A
2602
n
20
A
2602
E
G
2603
n
21
G
2603
E
U
2604
n
22
U
2604
E
U
2605
n
23
U
2605
E
C
2606
n
24
C
2606
E
G
2607
n
25
G
2607
E
G
2608
n
26
G
2608
E
U
2609
n
27
U
2609
E
n
1
1
O
n
2
2
O
n
3
3
O
n
4
4
O
PRO
5
n
5
PRO
5
O
THR
6
n
6
THR
6
O
ILE
7
n
7
ILE
7
O
ASN
8
n
8
ASN
8
O
GLN
9
n
9
GLN
9
O
LEU
10
n
10
LEU
10
O
VAL
11
n
11
VAL
11
O
ARG
12
n
12
ARG
12
O
LYS
13
n
13
LYS
13
O
GLY
14
n
14
GLY
14
O
ARG
15
n
15
ARG
15
O
GLU
16
n
16
GLU
16
O
LYS
17
n
17
LYS
17
O
VAL
18
n
18
VAL
18
O
ARG
19
n
19
ARG
19
O
LYS
20
n
20
LYS
20
O
LYS
21
n
21
LYS
21
O
SER
22
n
22
SER
22
O
LYS
23
n
23
LYS
23
O
VAL
24
n
24
VAL
24
O
PRO
25
n
25
PRO
25
O
ALA
26
n
26
ALA
26
O
LEU
27
n
27
LEU
27
O
LYS
28
n
28
LYS
28
O
GLY
29
n
29
GLY
29
O
ALA
30
n
30
ALA
30
O
PRO
31
n
31
PRO
31
O
PHE
32
n
32
PHE
32
O
ARG
33
n
33
ARG
33
O
ARG
34
n
34
ARG
34
O
GLY
35
n
35
GLY
35
O
VAL
36
n
36
VAL
36
O
CYS
37
n
37
CYS
37
O
THR
38
n
38
THR
38
O
VAL
39
n
39
VAL
39
O
VAL
40
n
40
VAL
40
O
ARG
41
n
41
ARG
41
O
THR
42
n
42
THR
42
O
VAL
43
n
43
VAL
43
O
THR
44
n
44
THR
44
O
PRO
45
n
45
PRO
45
O
LYS
46
n
46
LYS
46
O
LYS
47
n
47
LYS
47
O
PRO
48
n
48
PRO
48
O
ASN
49
n
49
ASN
49
O
SER
50
n
50
SER
50
O
ALA
51
n
51
ALA
51
O
LEU
52
n
52
LEU
52
O
ARG
53
n
53
ARG
53
O
LYS
54
n
54
LYS
54
O
VAL
55
n
55
VAL
55
O
ALA
56
n
56
ALA
56
O
LYS
57
n
57
LYS
57
O
VAL
58
n
58
VAL
58
O
ARG
59
n
59
ARG
59
O
LEU
60
n
60
LEU
60
O
THR
61
n
61
THR
61
O
SER
62
n
62
SER
62
O
GLY
63
n
63
GLY
63
O
TYR
64
n
64
TYR
64
O
GLU
65
n
65
GLU
65
O
VAL
66
n
66
VAL
66
O
THR
67
n
67
THR
67
O
ALA
68
n
68
ALA
68
O
TYR
69
n
69
TYR
69
O
ILE
70
n
70
ILE
70
O
PRO
71
n
71
PRO
71
O
GLY
72
n
72
GLY
72
O
GLU
73
n
73
GLU
73
O
GLY
74
n
74
GLY
74
O
HIS
75
n
75
HIS
75
O
ASN
76
n
76
ASN
76
O
LEU
77
n
77
LEU
77
O
GLN
78
n
78
GLN
78
O
GLU
79
n
79
GLU
79
O
HIS
80
n
80
HIS
80
O
SER
81
n
81
SER
81
O
VAL
82
n
82
VAL
82
O
VAL
83
n
83
VAL
83
O
LEU
84
n
84
LEU
84
O
ILE
85
n
85
ILE
85
O
ARG
86
n
86
ARG
86
O
GLY
87
n
87
GLY
87
O
GLY
88
n
88
GLY
88
O
ARG
89
n
89
ARG
89
O
VAL
90
n
90
VAL
90
O
LYS
91
n
91
LYS
91
O
ASP
92
n
92
ASP
92
O
LEU
93
n
93
LEU
93
O
PRO
94
n
94
PRO
94
O
GLY
95
n
95
GLY
95
O
VAL
96
n
96
VAL
96
O
ARG
97
n
97
ARG
97
O
TYR
98
n
98
TYR
98
O
HIS
99
n
99
HIS
99
O
ILE
100
n
100
ILE
100
O
VAL
101
n
101
VAL
101
O
ARG
102
n
102
ARG
102
O
GLY
103
n
103
GLY
103
O
VAL
104
n
104
VAL
104
O
TYR
105
n
105
TYR
105
O
ASP
106
n
106
ASP
106
O
ALA
107
n
107
ALA
107
O
ALA
108
n
108
ALA
108
O
GLY
109
n
109
GLY
109
O
VAL
110
n
110
VAL
110
O
LYS
111
n
111
LYS
111
O
ASP
112
n
112
ASP
112
O
ARG
113
n
113
ARG
113
O
LYS
114
n
114
LYS
114
O
LYS
115
n
115
LYS
115
O
SER
116
n
116
SER
116
O
ARG
117
n
117
ARG
117
O
SER
118
n
118
SER
118
O
LYS
119
n
119
LYS
119
O
TYR
120
n
120
TYR
120
O
GLY
121
n
121
GLY
121
O
THR
122
n
122
THR
122
O
LYS
123
n
123
LYS
123
O
LYS
124
n
124
LYS
124
O
PRO
125
n
125
PRO
125
O
LYS
126
n
126
LYS
126
O
GLU
127
n
127
GLU
127
O
ALA
128
n
128
ALA
128
O
n
129
129
O
n
130
130
O
n
131
131
O
n
132
132
O
n
133
133
O
n
134
134
O
n
135
135
O
n
1
2
L
n
2
3
L
n
3
4
L
n
4
5
L
n
5
6
L
n
6
7
L
GLN
8
n
7
GLN
8
L
ILE
9
n
8
ILE
9
L
LYS
10
n
9
LYS
10
L
LEU
11
n
10
LEU
11
L
GLN
12
n
11
GLN
12
L
LEU
13
n
12
LEU
13
L
PRO
14
n
13
PRO
14
L
ALA
15
n
14
ALA
15
L
GLY
16
n
15
GLY
16
L
LYS
17
n
16
LYS
17
L
ALA
18
n
17
ALA
18
L
THR
19
n
18
THR
19
L
PRO
20
n
19
PRO
20
L
ALA
21
n
20
ALA
21
L
PRO
22
n
21
PRO
22
L
PRO
23
n
22
PRO
23
L
VAL
24
n
23
VAL
24
L
GLY
25
n
24
GLY
25
L
PRO
26
n
25
PRO
26
L
ALA
27
n
26
ALA
27
L
LEU
28
n
27
LEU
28
L
GLY
29
n
28
GLY
29
L
GLN
30
n
29
GLN
30
L
HIS
31
n
30
HIS
31
L
GLY
32
n
31
GLY
32
L
VAL
33
n
32
VAL
33
L
ASN
34
n
33
ASN
34
L
ILE
35
n
34
ILE
35
L
MET
36
n
35
MET
36
L
GLU
37
n
36
GLU
37
L
PHE
38
n
37
PHE
38
L
CYS
39
n
38
CYS
39
L
LYS
40
n
39
LYS
40
L
ARG
41
n
40
ARG
41
L
PHE
42
n
41
PHE
42
L
ASN
43
n
42
ASN
43
L
ALA
44
n
43
ALA
44
L
GLU
45
n
44
GLU
45
L
THR
46
n
45
THR
46
L
ALA
47
n
46
ALA
47
L
ASP
48
n
47
ASP
48
L
LYS
49
n
48
LYS
49
L
ALA
50
n
49
ALA
50
L
GLY
51
n
50
GLY
51
L
MET
52
n
51
MET
52
L
ILE
53
n
52
ILE
53
L
LEU
54
n
53
LEU
54
L
PRO
55
n
54
PRO
55
L
VAL
56
n
55
VAL
56
L
VAL
57
n
56
VAL
57
L
ILE
58
n
57
ILE
58
L
THR
59
n
58
THR
59
L
VAL
60
n
59
VAL
60
L
TYR
61
n
60
TYR
61
L
GLU
62
n
61
GLU
62
L
ASP
63
n
62
ASP
63
L
LYS
64
n
63
LYS
64
L
SER
65
n
64
SER
65
L
PHE
66
n
65
PHE
66
L
THR
67
n
66
THR
67
L
PHE
68
n
67
PHE
68
L
ILE
69
n
68
ILE
69
L
ILE
70
n
69
ILE
70
L
LYS
71
n
70
LYS
71
L
THR
72
n
71
THR
72
L
PRO
73
n
72
PRO
73
L
PRO
74
n
73
PRO
74
L
ALA
75
n
74
ALA
75
L
SER
76
n
75
SER
76
L
PHE
77
n
76
PHE
77
L
LEU
78
n
77
LEU
78
L
LEU
79
n
78
LEU
79
L
LYS
80
n
79
LYS
80
L
LYS
81
n
80
LYS
81
L
ALA
82
n
81
ALA
82
L
ALA
83
n
82
ALA
83
L
GLY
84
n
83
GLY
84
L
ILE
85
n
84
ILE
85
L
GLU
86
n
85
GLU
86
L
LYS
87
n
86
LYS
87
L
GLY
88
n
87
GLY
88
L
SER
89
n
88
SER
89
L
SER
90
n
89
SER
90
L
GLU
91
n
90
GLU
91
L
PRO
92
n
91
PRO
92
L
LYS
93
n
92
LYS
93
L
ARG
94
n
93
ARG
94
L
LYS
95
n
94
LYS
95
L
ILE
96
n
95
ILE
96
L
VAL
97
n
96
VAL
97
L
GLY
98
n
97
GLY
98
L
LYS
99
n
98
LYS
99
L
VAL
100
n
99
VAL
100
L
THR
101
n
100
THR
101
L
ARG
102
n
101
ARG
102
L
LYS
103
n
102
LYS
103
L
GLN
104
n
103
GLN
104
L
ILE
105
n
104
ILE
105
L
GLU
106
n
105
GLU
106
L
GLU
107
n
106
GLU
107
L
ILE
108
n
107
ILE
108
L
ALA
109
n
108
ALA
109
L
LYS
110
n
109
LYS
110
L
THR
111
n
110
THR
111
L
LYS
112
n
111
LYS
112
L
MET
113
n
112
MET
113
L
PRO
114
n
113
PRO
114
L
ASP
115
n
114
ASP
115
L
LEU
116
n
115
LEU
116
L
ASN
117
n
116
ASN
117
L
ALA
118
n
117
ALA
118
L
ASN
119
n
118
ASN
119
L
SER
120
n
119
SER
120
L
LEU
121
n
120
LEU
121
L
GLU
122
n
121
GLU
122
L
ALA
123
n
122
ALA
123
L
ALA
124
n
123
ALA
124
L
MET
125
n
124
MET
125
L
LYS
126
n
125
LYS
126
L
ILE
127
n
126
ILE
127
L
ILE
128
n
127
ILE
128
L
GLU
129
n
128
GLU
129
L
GLY
130
n
129
GLY
130
L
THR
131
n
130
THR
131
L
ALA
132
n
131
ALA
132
L
LYS
133
n
132
LYS
133
L
SER
134
n
133
SER
134
L
MET
135
n
134
MET
135
L
GLY
136
n
135
GLY
136
L
ILE
137
n
136
ILE
137
L
GLU
138
n
137
GLU
138
L
VAL
139
n
138
VAL
139
L
VAL
140
n
139
VAL
140
L
n
140
141
L
author_defined_assembly
8
octameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
O
MET
1
G
MET
1
1
Y
1
O
VAL
2
G
VAL
2
1
Y
1
O
ALA
3
G
ALA
3
1
Y
1
O
LEU
4
G
LEU
4
1
Y
1
O
ALA
129
G
ALA
129
1
Y
1
O
LYS
130
G
LYS
130
1
Y
1
O
THR
131
G
THR
131
1
Y
1
O
ALA
132
G
ALA
132
1
Y
1
O
ALA
133
G
ALA
133
1
Y
1
O
LYS
134
G
LYS
134
1
Y
1
O
LYS
135
G
LYS
135
1
Y
1
L
ALA
2
H
ALA
1
1
Y
1
L
LYS
3
H
LYS
2
1
Y
1
L
LYS
4
H
LYS
3
1
Y
1
L
VAL
5
H
VAL
4
1
Y
1
L
ALA
6
H
ALA
5
1
Y
1
L
ALA
7
H
ALA
6
1
Y
1
L
ASP
141
H
ASP
140
1
Y
0
506
0
249
257
Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
RIBOSOME
RF2, Release Complex, Conformational Changes, RIBOSOME
RS12_THET8
UNP
7
1
Q5SHN3
RL11_THEMA
UNP
8
1
P29395
1MVR
PDB
1
1MVR
1MVR
PDB
2
1MVR
1MVR
PDB
3
1MVR
1MVR
PDB
4
1MVR
1MVR
PDB
5
1MVR
1MVR
PDB
6
1MVR
1
131
1MVR
5
135
Q5SHN3
O
1
5
135
1
140
1MVR
2
141
P29395
L
2
1
140
11
13
1MVR
11
13
1MVR
1
3
1
3
1046
1210
1MVR
1046
1210
1MVR
A
4
1
45
1400
1500
1MVR
1400
1500
1MVR
B
5
1
96
1906
1924
1MVR
1906
1924
1MVR
C
6
1
19
2448
2506
1MVR
2448
2506
1MVR
D
7
1
59
2583
2609
1MVR
2583
2609
1MVR
E
8
1
27
1
P 1