1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Rawat, U.B. Zavialov, A.V. Sengupta, J. Valle, M. Grassucci, R.A. Linde, J. Vestergaard, B. Ehrenberg, M. Frank, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 R C N 416 N O N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N O N 453 N P N 454 N O N 455 N O N 456 N O N 457 N C N 458 R C N 459 N O N 460 S C N 461 N O N 462 R C N 463 N O N 464 R C N 465 N N N 466 N C N 467 N O N 468 N N N 469 N C N 470 N O N 471 N C N 472 N C N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 N C N 491 N C N 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub N 435 N sing Y 436 N doub N 437 N sing Y 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing UK Nature NATUAS 0006 0028-0836 421 87 90 10.1038/nature01224 12511960 A cryo-electron microscopic study of ribosome-bound termination factor RF2 2003 US Science SCIEAS 0038 0036-8075 292 883 896 Crystal structure of the ribosome at 5.5 A resolution 2001 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 106 233 241 The path of messenger RNA through the ribosome 2001 10.2210/pdb1mvr/pdb pdb_00001mvr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 METHOD--Manual OTHER REAL 1GIX 1 1GIX PDB experimental model 1GIY 2 1GIY PDB experimental model 2.82 SPIDER package 1MVR TMV Reference Bases Alignment 18199 12.8 POINT polymix buffer polymix buffer 7.5 Wiener filtering of 3D-maps 70S ribosome 0 RIBOSOME PARTICLE 1 1 SINGLE PARTICLE 20 KODAK SO-163 FILM 200 49696 2001-11-08 FIELD EMISSION GUN FLOOD BEAM FEI TECNAI F20 BRIGHT FIELD 2.0 4500 2020 50000 1 93 0 0 1MVR C1 MODEL FITTING O RECONSTRUCTION 1 SPIDER 32 NO NO NO YES ETHANE Rapid-freezing in liquid ethane 1MVR HOMEMADE PLUNGER based on coordinates from 1GIX, 30S Subunit 873.540 mRNA, triplet codon (A-site) 1 nat polymer based on coordinates from 1GIX, 30S Subunit 14465.605 Helix 34 of 16S rRNA 1 nat polymer based on coordinates from 1GIX, 30S Subunit 31208.639 Helix 44 of 16S rRNA 1 nat polymer based on coordinates from 1GIY, 50S Subunit 6077.673 Helix 69 of 23S rRNA 1 nat polymer based on coordinates from 1GIY, 50S Subunit 18996.311 Helix 89 of 23S rRNA 1 nat polymer based on coordinates from 1GIY, 50S Subunit 8706.199 Helix 93 of 23S rRNA 1 nat polymer based on coordinates from 1GIX, 30S Subunit 14920.754 30S RIBOSOMAL PROTEIN S12 1 nat polymer based on coordinates from 1GIY, 50S Subunit 14980.726 50S ribosomal protein L11 1 nat polymer no no UUU UUU 1 polyribonucleotide no no AGGUGCUGCAUGGCCGUCGUCAACGACGUCUGGUCAGCAUGGCCC AGGUGCUGCAUGGCCGUCGUCAACGACGUCUGGUCAGCAUGGCCC A polyribonucleotide no no CGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGAC UGGGGCGAAGUCGUAA CGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGAC UGGGGCGAAGUCGUAA B polyribonucleotide no no GGCCGUAACUAUAACGGUC GGCCGUAACUAUAACGGUC C polyribonucleotide no no AUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCGAUGU AUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCGAUGU D polyribonucleotide no no GUUCAGAACGUCGUGAGACAGUUCGGU GUUCAGAACGUCGUGAGACAGUUCGGU E polyribonucleotide no no MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEH SVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEH SVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK O polypeptide(L) no no AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 Escherichia sample 83333 Escherichia coli Escherichia coli K12 em_image_scans em_software chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list pdbx_initial_refinement_model repository Initial release Version format compliance Source and taxonomy Version format compliance Data collection Data collection Database references Refinement description 1 0 2003-04-01 1 1 2008-04-28 1 2 2011-07-13 1 3 2018-07-18 1 4 2024-02-14 _em_software.image_processing_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type P ATOMS ONLY P ATOMS ONLY P ATOMS ONLY P ATOMS ONLY P ATOMS ONLY P ATOMS ONLY CA ATOMS ONLY CA ATOMS ONLY Crystal structure of the Ribosome at 5.5 A resolution--30S Ribosome subunit, three tRNA, and mRNA molecules Crystal structure of the Ribosome at 5.5 A resolution--50S Ribosome subunit, three tRNA, and mRNA molecules Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome Complex Polypeptide chain Release Factor 2 (RF2) from E.coli RCSB Y RCSB 2002-09-26 REL 1GIX PDB experimental model 1GIY PDB experimental model U 11 n 1 U 11 1 U 12 n 2 U 12 1 U 13 n 3 U 13 1 A 1046 n 1 A 1046 A G 1047 n 2 G 1047 A G 1048 n 3 G 1048 A U 1049 n 4 U 1049 A G 1050 n 5 G 1050 A C 1051 n 6 C 1051 A U 1052 n 7 U 1052 A G 1053 n 8 G 1053 A C 1054 n 9 C 1054 A A 1055 n 10 A 1055 A U 1056 n 11 U 1056 A G 1057 n 12 G 1057 A G 1058 n 13 G 1058 A C 1059 n 14 C 1059 A C 1060 n 15 C 1060 A G 1061 n 16 G 1061 A U 1062 n 17 U 1062 A C 1063 n 18 C 1063 A G 1064 n 19 G 1064 A U 1065 n 20 U 1065 A C 1066 n 21 C 1066 A A 1067 n 22 A 1067 A A 1188 n 23 A 1188 A C 1189 n 24 C 1189 A G 1190 n 25 G 1190 A A 1191 n 26 A 1191 A C 1192 n 27 C 1192 A G 1193 n 28 G 1193 A U 1194 n 29 U 1194 A C 1195 n 30 C 1195 A U 1196 n 31 U 1196 A G 1197 n 32 G 1197 A G 1198 n 33 G 1198 A U 1199 n 34 U 1199 A C 1200 n 35 C 1200 A A 1201 n 36 A 1201 A G 1202 n 37 G 1202 A C 1203 n 38 C 1203 A A 1204 n 39 A 1204 A U 1205 n 40 U 1205 A G 1206 n 41 G 1206 A G 1207 n 42 G 1207 A C 1208 n 43 C 1208 A C 1209 n 44 C 1209 A C 1210 n 45 C 1210 A C 1400 n 1 C 1400 B G 1401 n 2 G 1401 B C 1402 n 3 C 1402 B C 1403 n 4 C 1403 B C 1404 n 5 C 1404 B G 1405 n 6 G 1405 B U 1406 n 7 U 1406 B C 1407 n 8 C 1407 B A 1408 n 9 A 1408 B C 1409 n 10 C 1409 B G 1410 n 11 G 1410 B C 1411 n 12 C 1411 B C 1412 n 13 C 1412 B A 1413 n 14 A 1413 B U 1414 n 15 U 1414 B G 1415 n 16 G 1415 B G 1416 n 17 G 1416 B G 1417 n 18 G 1417 B A 1418 n 19 A 1418 B G 1419 n 20 G 1419 B C 1420 n 21 C 1420 B G 1421 n 22 G 1421 B G 1422 n 23 G 1422 B G 1423 n 24 G 1423 B C 1424 n 25 C 1424 B U 1425 n 26 U 1425 B C 1426 n 27 C 1426 B U 1427 n 28 U 1427 B A 1428 n 29 A 1428 B C 1429 n 30 C 1429 B C 1430 n 31 C 1430 B C 1431 n 32 C 1431 B G 1432 n 33 G 1432 B A 1433 n 34 A 1433 B A 1434 n 35 A 1434 B G 1435 n 36 G 1435 B U 1436 n 37 U 1436 B C 1437 n 38 C 1437 B G 1438 n 39 G 1438 B C 1439 n 40 C 1439 B C 1440 n 41 C 1440 B G 1441 n 42 G 1441 B G 1442 n 43 G 1442 B G 1443 n 44 G 1443 B A 1446 n 45 A 1446 B G 1447 n 46 G 1447 B C 1448 n 47 C 1448 B C 1449 n 48 C 1449 B U 1450 n 49 U 1450 B A 1451 n 50 A 1451 B C 1452 n 51 C 1452 B G 1453 n 52 G 1453 B G 1454 n 53 G 1454 B G 1455 n 54 G 1455 B C 1459 n 55 C 1459 B A 1460 n 56 A 1460 B G 1461 n 57 G 1461 B G 1462 n 58 G 1462 B C 1463 n 59 C 1463 B G 1464 n 60 G 1464 B C 1465 n 61 C 1465 B C 1466 n 62 C 1466 B G 1467 n 63 G 1467 B A 1468 n 64 A 1468 B G 1469 n 65 G 1469 B G 1470 n 66 G 1470 B G 1471 n 67 G 1471 B U 1472 n 68 U 1472 B A 1473 n 69 A 1473 B G 1474 n 70 G 1474 B G 1475 n 71 G 1475 B G 1476 n 72 G 1476 B C 1477 n 73 C 1477 B C 1478 n 74 C 1478 B C 1479 n 75 C 1479 B G 1480 n 76 G 1480 B U 1481 n 77 U 1481 B G 1482 n 78 G 1482 B A 1483 n 79 A 1483 B C 1484 n 80 C 1484 B U 1485 n 81 U 1485 B G 1486 n 82 G 1486 B G 1487 n 83 G 1487 B G 1488 n 84 G 1488 B G 1489 n 85 G 1489 B C 1490 n 86 C 1490 B G 1491 n 87 G 1491 B A 1492 n 88 A 1492 B A 1493 n 89 A 1493 B G 1494 n 90 G 1494 B U 1495 n 91 U 1495 B C 1496 n 92 C 1496 B G 1497 n 93 G 1497 B U 1498 n 94 U 1498 B A 1499 n 95 A 1499 B A 1500 n 96 A 1500 B G 1906 n 1 G 1906 C G 1907 n 2 G 1907 C C 1908 n 3 C 1908 C C 1909 n 4 C 1909 C G 1910 n 5 G 1910 C U 1911 n 6 U 1911 C A 1912 n 7 A 1912 C A 1913 n 8 A 1913 C C 1914 n 9 C 1914 C U 1915 n 10 U 1915 C A 1916 n 11 A 1916 C U 1917 n 12 U 1917 C A 1918 n 13 A 1918 C A 1919 n 14 A 1919 C C 1920 n 15 C 1920 C G 1921 n 16 G 1921 C G 1922 n 17 G 1922 C U 1923 n 18 U 1923 C C 1924 n 19 C 1924 C A 2448 n 1 A 2448 D U 2449 n 2 U 2449 D A 2450 n 3 A 2450 D A 2451 n 4 A 2451 D C 2452 n 5 C 2452 D A 2453 n 6 A 2453 D G 2454 n 7 G 2454 D G 2455 n 8 G 2455 D C 2456 n 9 C 2456 D U 2457 n 10 U 2457 D G 2458 n 11 G 2458 D A 2459 n 12 A 2459 D U 2460 n 13 U 2460 D C 2461 n 14 C 2461 D U 2462 n 15 U 2462 D C 2463 n 16 C 2463 D C 2464 n 17 C 2464 D C 2465 n 18 C 2465 D C 2466 n 19 C 2466 D C 2467 n 20 C 2467 D G 2468 n 21 G 2468 D A 2469 n 22 A 2469 D G 2470 n 23 G 2470 D C 2471 n 24 C 2471 D G 2472 n 25 G 2472 D U 2473 n 26 U 2473 D C 2474 n 27 C 2474 D C 2475 n 28 C 2475 D A 2476 n 29 A 2476 D C 2477 n 30 C 2477 D A 2478 n 31 A 2478 D G 2479 n 32 G 2479 D C 2480 n 33 C 2480 D G 2481 n 34 G 2481 D G 2482 n 35 G 2482 D C 2483 n 36 C 2483 D G 2484 n 37 G 2484 D G 2485 n 38 G 2485 D G 2486 n 39 G 2486 D G 2487 n 40 G 2487 D A 2488 n 41 A 2488 D G 2489 n 42 G 2489 D G 2490 n 43 G 2490 D U 2491 n 44 U 2491 D U 2492 n 45 U 2492 D U 2493 n 46 U 2493 D G 2494 n 47 G 2494 D G 2495 n 48 G 2495 D C 2496 n 49 C 2496 D A 2497 n 50 A 2497 D C 2498 n 51 C 2498 D C 2499 n 52 C 2499 D U 2500 n 53 U 2500 D C 2501 n 54 C 2501 D G 2502 n 55 G 2502 D A 2503 n 56 A 2503 D U 2504 n 57 U 2504 D G 2505 n 58 G 2505 D U 2506 n 59 U 2506 D G 2583 n 1 G 2583 E U 2584 n 2 U 2584 E U 2585 n 3 U 2585 E C 2586 n 4 C 2586 E A 2587 n 5 A 2587 E G 2588 n 6 G 2588 E A 2589 n 7 A 2589 E A 2590 n 8 A 2590 E C 2591 n 9 C 2591 E G 2592 n 10 G 2592 E U 2593 n 11 U 2593 E C 2594 n 12 C 2594 E G 2595 n 13 G 2595 E U 2596 n 14 U 2596 E G 2597 n 15 G 2597 E A 2598 n 16 A 2598 E G 2599 n 17 G 2599 E A 2600 n 18 A 2600 E C 2601 n 19 C 2601 E A 2602 n 20 A 2602 E G 2603 n 21 G 2603 E U 2604 n 22 U 2604 E U 2605 n 23 U 2605 E C 2606 n 24 C 2606 E G 2607 n 25 G 2607 E G 2608 n 26 G 2608 E U 2609 n 27 U 2609 E n 1 1 O n 2 2 O n 3 3 O n 4 4 O PRO 5 n 5 PRO 5 O THR 6 n 6 THR 6 O ILE 7 n 7 ILE 7 O ASN 8 n 8 ASN 8 O GLN 9 n 9 GLN 9 O LEU 10 n 10 LEU 10 O VAL 11 n 11 VAL 11 O ARG 12 n 12 ARG 12 O LYS 13 n 13 LYS 13 O GLY 14 n 14 GLY 14 O ARG 15 n 15 ARG 15 O GLU 16 n 16 GLU 16 O LYS 17 n 17 LYS 17 O VAL 18 n 18 VAL 18 O ARG 19 n 19 ARG 19 O LYS 20 n 20 LYS 20 O LYS 21 n 21 LYS 21 O SER 22 n 22 SER 22 O LYS 23 n 23 LYS 23 O VAL 24 n 24 VAL 24 O PRO 25 n 25 PRO 25 O ALA 26 n 26 ALA 26 O LEU 27 n 27 LEU 27 O LYS 28 n 28 LYS 28 O GLY 29 n 29 GLY 29 O ALA 30 n 30 ALA 30 O PRO 31 n 31 PRO 31 O PHE 32 n 32 PHE 32 O ARG 33 n 33 ARG 33 O ARG 34 n 34 ARG 34 O GLY 35 n 35 GLY 35 O VAL 36 n 36 VAL 36 O CYS 37 n 37 CYS 37 O THR 38 n 38 THR 38 O VAL 39 n 39 VAL 39 O VAL 40 n 40 VAL 40 O ARG 41 n 41 ARG 41 O THR 42 n 42 THR 42 O VAL 43 n 43 VAL 43 O THR 44 n 44 THR 44 O PRO 45 n 45 PRO 45 O LYS 46 n 46 LYS 46 O LYS 47 n 47 LYS 47 O PRO 48 n 48 PRO 48 O ASN 49 n 49 ASN 49 O SER 50 n 50 SER 50 O ALA 51 n 51 ALA 51 O LEU 52 n 52 LEU 52 O ARG 53 n 53 ARG 53 O LYS 54 n 54 LYS 54 O VAL 55 n 55 VAL 55 O ALA 56 n 56 ALA 56 O LYS 57 n 57 LYS 57 O VAL 58 n 58 VAL 58 O ARG 59 n 59 ARG 59 O LEU 60 n 60 LEU 60 O THR 61 n 61 THR 61 O SER 62 n 62 SER 62 O GLY 63 n 63 GLY 63 O TYR 64 n 64 TYR 64 O GLU 65 n 65 GLU 65 O VAL 66 n 66 VAL 66 O THR 67 n 67 THR 67 O ALA 68 n 68 ALA 68 O TYR 69 n 69 TYR 69 O ILE 70 n 70 ILE 70 O PRO 71 n 71 PRO 71 O GLY 72 n 72 GLY 72 O GLU 73 n 73 GLU 73 O GLY 74 n 74 GLY 74 O HIS 75 n 75 HIS 75 O ASN 76 n 76 ASN 76 O LEU 77 n 77 LEU 77 O GLN 78 n 78 GLN 78 O GLU 79 n 79 GLU 79 O HIS 80 n 80 HIS 80 O SER 81 n 81 SER 81 O VAL 82 n 82 VAL 82 O VAL 83 n 83 VAL 83 O LEU 84 n 84 LEU 84 O ILE 85 n 85 ILE 85 O ARG 86 n 86 ARG 86 O GLY 87 n 87 GLY 87 O GLY 88 n 88 GLY 88 O ARG 89 n 89 ARG 89 O VAL 90 n 90 VAL 90 O LYS 91 n 91 LYS 91 O ASP 92 n 92 ASP 92 O LEU 93 n 93 LEU 93 O PRO 94 n 94 PRO 94 O GLY 95 n 95 GLY 95 O VAL 96 n 96 VAL 96 O ARG 97 n 97 ARG 97 O TYR 98 n 98 TYR 98 O HIS 99 n 99 HIS 99 O ILE 100 n 100 ILE 100 O VAL 101 n 101 VAL 101 O ARG 102 n 102 ARG 102 O GLY 103 n 103 GLY 103 O VAL 104 n 104 VAL 104 O TYR 105 n 105 TYR 105 O ASP 106 n 106 ASP 106 O ALA 107 n 107 ALA 107 O ALA 108 n 108 ALA 108 O GLY 109 n 109 GLY 109 O VAL 110 n 110 VAL 110 O LYS 111 n 111 LYS 111 O ASP 112 n 112 ASP 112 O ARG 113 n 113 ARG 113 O LYS 114 n 114 LYS 114 O LYS 115 n 115 LYS 115 O SER 116 n 116 SER 116 O ARG 117 n 117 ARG 117 O SER 118 n 118 SER 118 O LYS 119 n 119 LYS 119 O TYR 120 n 120 TYR 120 O GLY 121 n 121 GLY 121 O THR 122 n 122 THR 122 O LYS 123 n 123 LYS 123 O LYS 124 n 124 LYS 124 O PRO 125 n 125 PRO 125 O LYS 126 n 126 LYS 126 O GLU 127 n 127 GLU 127 O ALA 128 n 128 ALA 128 O n 129 129 O n 130 130 O n 131 131 O n 132 132 O n 133 133 O n 134 134 O n 135 135 O n 1 2 L n 2 3 L n 3 4 L n 4 5 L n 5 6 L n 6 7 L GLN 8 n 7 GLN 8 L ILE 9 n 8 ILE 9 L LYS 10 n 9 LYS 10 L LEU 11 n 10 LEU 11 L GLN 12 n 11 GLN 12 L LEU 13 n 12 LEU 13 L PRO 14 n 13 PRO 14 L ALA 15 n 14 ALA 15 L GLY 16 n 15 GLY 16 L LYS 17 n 16 LYS 17 L ALA 18 n 17 ALA 18 L THR 19 n 18 THR 19 L PRO 20 n 19 PRO 20 L ALA 21 n 20 ALA 21 L PRO 22 n 21 PRO 22 L PRO 23 n 22 PRO 23 L VAL 24 n 23 VAL 24 L GLY 25 n 24 GLY 25 L PRO 26 n 25 PRO 26 L ALA 27 n 26 ALA 27 L LEU 28 n 27 LEU 28 L GLY 29 n 28 GLY 29 L GLN 30 n 29 GLN 30 L HIS 31 n 30 HIS 31 L GLY 32 n 31 GLY 32 L VAL 33 n 32 VAL 33 L ASN 34 n 33 ASN 34 L ILE 35 n 34 ILE 35 L MET 36 n 35 MET 36 L GLU 37 n 36 GLU 37 L PHE 38 n 37 PHE 38 L CYS 39 n 38 CYS 39 L LYS 40 n 39 LYS 40 L ARG 41 n 40 ARG 41 L PHE 42 n 41 PHE 42 L ASN 43 n 42 ASN 43 L ALA 44 n 43 ALA 44 L GLU 45 n 44 GLU 45 L THR 46 n 45 THR 46 L ALA 47 n 46 ALA 47 L ASP 48 n 47 ASP 48 L LYS 49 n 48 LYS 49 L ALA 50 n 49 ALA 50 L GLY 51 n 50 GLY 51 L MET 52 n 51 MET 52 L ILE 53 n 52 ILE 53 L LEU 54 n 53 LEU 54 L PRO 55 n 54 PRO 55 L VAL 56 n 55 VAL 56 L VAL 57 n 56 VAL 57 L ILE 58 n 57 ILE 58 L THR 59 n 58 THR 59 L VAL 60 n 59 VAL 60 L TYR 61 n 60 TYR 61 L GLU 62 n 61 GLU 62 L ASP 63 n 62 ASP 63 L LYS 64 n 63 LYS 64 L SER 65 n 64 SER 65 L PHE 66 n 65 PHE 66 L THR 67 n 66 THR 67 L PHE 68 n 67 PHE 68 L ILE 69 n 68 ILE 69 L ILE 70 n 69 ILE 70 L LYS 71 n 70 LYS 71 L THR 72 n 71 THR 72 L PRO 73 n 72 PRO 73 L PRO 74 n 73 PRO 74 L ALA 75 n 74 ALA 75 L SER 76 n 75 SER 76 L PHE 77 n 76 PHE 77 L LEU 78 n 77 LEU 78 L LEU 79 n 78 LEU 79 L LYS 80 n 79 LYS 80 L LYS 81 n 80 LYS 81 L ALA 82 n 81 ALA 82 L ALA 83 n 82 ALA 83 L GLY 84 n 83 GLY 84 L ILE 85 n 84 ILE 85 L GLU 86 n 85 GLU 86 L LYS 87 n 86 LYS 87 L GLY 88 n 87 GLY 88 L SER 89 n 88 SER 89 L SER 90 n 89 SER 90 L GLU 91 n 90 GLU 91 L PRO 92 n 91 PRO 92 L LYS 93 n 92 LYS 93 L ARG 94 n 93 ARG 94 L LYS 95 n 94 LYS 95 L ILE 96 n 95 ILE 96 L VAL 97 n 96 VAL 97 L GLY 98 n 97 GLY 98 L LYS 99 n 98 LYS 99 L VAL 100 n 99 VAL 100 L THR 101 n 100 THR 101 L ARG 102 n 101 ARG 102 L LYS 103 n 102 LYS 103 L GLN 104 n 103 GLN 104 L ILE 105 n 104 ILE 105 L GLU 106 n 105 GLU 106 L GLU 107 n 106 GLU 107 L ILE 108 n 107 ILE 108 L ALA 109 n 108 ALA 109 L LYS 110 n 109 LYS 110 L THR 111 n 110 THR 111 L LYS 112 n 111 LYS 112 L MET 113 n 112 MET 113 L PRO 114 n 113 PRO 114 L ASP 115 n 114 ASP 115 L LEU 116 n 115 LEU 116 L ASN 117 n 116 ASN 117 L ALA 118 n 117 ALA 118 L ASN 119 n 118 ASN 119 L SER 120 n 119 SER 120 L LEU 121 n 120 LEU 121 L GLU 122 n 121 GLU 122 L ALA 123 n 122 ALA 123 L ALA 124 n 123 ALA 124 L MET 125 n 124 MET 125 L LYS 126 n 125 LYS 126 L ILE 127 n 126 ILE 127 L ILE 128 n 127 ILE 128 L GLU 129 n 128 GLU 129 L GLY 130 n 129 GLY 130 L THR 131 n 130 THR 131 L ALA 132 n 131 ALA 132 L LYS 133 n 132 LYS 133 L SER 134 n 133 SER 134 L MET 135 n 134 MET 135 L GLY 136 n 135 GLY 136 L ILE 137 n 136 ILE 137 L GLU 138 n 137 GLU 138 L VAL 139 n 138 VAL 139 L VAL 140 n 139 VAL 140 L n 140 141 L author_defined_assembly 8 octameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 O MET 1 G MET 1 1 Y 1 O VAL 2 G VAL 2 1 Y 1 O ALA 3 G ALA 3 1 Y 1 O LEU 4 G LEU 4 1 Y 1 O ALA 129 G ALA 129 1 Y 1 O LYS 130 G LYS 130 1 Y 1 O THR 131 G THR 131 1 Y 1 O ALA 132 G ALA 132 1 Y 1 O ALA 133 G ALA 133 1 Y 1 O LYS 134 G LYS 134 1 Y 1 O LYS 135 G LYS 135 1 Y 1 L ALA 2 H ALA 1 1 Y 1 L LYS 3 H LYS 2 1 Y 1 L LYS 4 H LYS 3 1 Y 1 L VAL 5 H VAL 4 1 Y 1 L ALA 6 H ALA 5 1 Y 1 L ALA 7 H ALA 6 1 Y 1 L ASP 141 H ASP 140 1 Y 0 506 0 249 257 Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N RIBOSOME RF2, Release Complex, Conformational Changes, RIBOSOME RS12_THET8 UNP 7 1 Q5SHN3 RL11_THEMA UNP 8 1 P29395 1MVR PDB 1 1MVR 1MVR PDB 2 1MVR 1MVR PDB 3 1MVR 1MVR PDB 4 1MVR 1MVR PDB 5 1MVR 1MVR PDB 6 1MVR 1 131 1MVR 5 135 Q5SHN3 O 1 5 135 1 140 1MVR 2 141 P29395 L 2 1 140 11 13 1MVR 11 13 1MVR 1 3 1 3 1046 1210 1MVR 1046 1210 1MVR A 4 1 45 1400 1500 1MVR 1400 1500 1MVR B 5 1 96 1906 1924 1MVR 1906 1924 1MVR C 6 1 19 2448 2506 1MVR 2448 2506 1MVR D 7 1 59 2583 2609 1MVR 2583 2609 1MVR E 8 1 27 1 P 1