0.013252 0.007651 0.000000 0.000000 0.015302 0.000000 0.000000 0.000000 0.005287 0.00000 0.00000 0.00000 Min, J.R. Zhang, X. Cheng, X.D. Grewal, S.I.S. Xu, R.-M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 75.460 75.460 189.130 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NI N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N S N 306 N O N 307 N O N 308 N O N 309 N O N 310 N N N 311 S C N 312 N C N 313 N O N 314 R C N 315 N O N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N N Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 9 828 832 12389037 Structure of the SET domain histone lysine methyltransferase Clr4. 2002 10.2210/pdb1mvx/pdb pdb_00001mvx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 CCD 2001-07-01 ADSC QUANTUM 4 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X26C NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X26C 33923.895 CRYPTIC LOCI REGULATOR 4 Residues 192-490 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 65.409 ZINC ION 3 syn non-polymer 58.693 NICKEL (II) ION 1 syn non-polymer 18.015 water 51 nat water lysine methyltransferase CLR4 no no SKLDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLN NPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAG TFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIY DLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLFG SKLDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLN NPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAG TFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIY DLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLFG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fission yeast Schizosaccharomyces Escherichia sample 4896 Schizosaccharomyces pombe 562 Escherichia coli 1 2.29 46.29 VAPOR DIFFUSION, HANGING DROP 5.2 ammonium sulfate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-10-30 1 1 2008-04-28 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYPTIC LOCI REGULATOR 4 RCSB Y RCSB 2002-09-26 REL REL SO4 SULFATE ION ZN ZINC ION NI NICKEL (II) ION HOH water SO4 601 2 SO4 SO4 601 A ZN2 501 3 ZN ZN 501 A ZN2 502 3 ZN ZN 502 A ZN2 503 3 ZN ZN 503 A NI2 504 4 NI NI 504 A TIP 1 5 HOH HOH 1 A TIP 2 5 HOH HOH 2 A TIP 3 5 HOH HOH 3 A TIP 4 5 HOH HOH 4 A TIP 5 5 HOH HOH 5 A TIP 6 5 HOH HOH 6 A TIP 7 5 HOH HOH 7 A TIP 8 5 HOH HOH 8 A TIP 9 5 HOH HOH 9 A TIP 10 5 HOH HOH 10 A TIP 11 5 HOH HOH 11 A TIP 12 5 HOH HOH 12 A TIP 13 5 HOH HOH 13 A TIP 14 5 HOH HOH 14 A TIP 15 5 HOH HOH 15 A TIP 16 5 HOH HOH 16 A TIP 17 5 HOH HOH 17 A TIP 18 5 HOH HOH 18 A TIP 19 5 HOH HOH 19 A TIP 20 5 HOH HOH 20 A TIP 21 5 HOH HOH 21 A TIP 22 5 HOH HOH 22 A TIP 23 5 HOH HOH 23 A TIP 24 5 HOH HOH 24 A TIP 25 5 HOH HOH 25 A TIP 26 5 HOH HOH 26 A TIP 27 5 HOH HOH 27 A TIP 28 5 HOH HOH 28 A TIP 29 5 HOH HOH 29 A TIP 30 5 HOH HOH 30 A TIP 31 5 HOH HOH 31 A TIP 32 5 HOH HOH 32 A TIP 33 5 HOH HOH 33 A TIP 34 5 HOH HOH 34 A TIP 35 5 HOH HOH 35 A TIP 36 5 HOH HOH 36 A TIP 37 5 HOH HOH 37 A TIP 38 5 HOH HOH 38 A TIP 39 5 HOH HOH 39 A TIP 40 5 HOH HOH 40 A TIP 41 5 HOH HOH 41 A TIP 42 5 HOH HOH 42 A TIP 43 5 HOH HOH 43 A TIP 44 5 HOH HOH 44 A TIP 45 5 HOH HOH 45 A TIP 46 5 HOH HOH 46 A TIP 47 5 HOH HOH 47 A TIP 48 5 HOH HOH 48 A TIP 49 5 HOH HOH 49 A TIP 50 5 HOH HOH 50 A TIP 51 5 HOH HOH 51 A n 1 192 A LYS 193 n 2 LYS 193 A LEU 194 n 3 LEU 194 A ASP 195 n 4 ASP 195 A SER 196 n 5 SER 196 A TYR 197 n 6 TYR 197 A THR 198 n 7 THR 198 A HIS 199 n 8 HIS 199 A LEU 200 n 9 LEU 200 A SER 201 n 10 SER 201 A PHE 202 n 11 PHE 202 A TYR 203 n 12 TYR 203 A GLU 204 n 13 GLU 204 A LYS 205 n 14 LYS 205 A ARG 206 n 15 ARG 206 A GLU 207 n 16 GLU 207 A LEU 208 n 17 LEU 208 A PHE 209 n 18 PHE 209 A ARG 210 n 19 ARG 210 A LYS 211 n 20 LYS 211 A LYS 212 n 21 LYS 212 A LEU 213 n 22 LEU 213 A ARG 214 n 23 ARG 214 A GLU 215 n 24 GLU 215 A ILE 216 n 25 ILE 216 A GLU 217 n 26 GLU 217 A GLY 218 n 27 GLY 218 A PRO 219 n 28 PRO 219 A GLU 220 n 29 GLU 220 A VAL 221 n 30 VAL 221 A THR 222 n 31 THR 222 A LEU 223 n 32 LEU 223 A VAL 224 n 33 VAL 224 A ASN 225 n 34 ASN 225 A GLU 226 n 35 GLU 226 A VAL 227 n 36 VAL 227 A ASP 228 n 37 ASP 228 A ASP 229 n 38 ASP 229 A GLU 230 n 39 GLU 230 A PRO 231 n 40 PRO 231 A CYS 232 n 41 CYS 232 A PRO 233 n 42 PRO 233 A SER 234 n 43 SER 234 A LEU 235 n 44 LEU 235 A ASP 236 n 45 ASP 236 A PHE 237 n 46 PHE 237 A GLN 238 n 47 GLN 238 A PHE 239 n 48 PHE 239 A ILE 240 n 49 ILE 240 A SER 241 n 50 SER 241 A GLN 242 n 51 GLN 242 A TYR 243 n 52 TYR 243 A ARG 244 n 53 ARG 244 A LEU 245 n 54 LEU 245 A THR 246 n 55 THR 246 A GLN 247 n 56 GLN 247 A GLY 248 n 57 GLY 248 A VAL 249 n 58 VAL 249 A ILE 250 n 59 ILE 250 A PRO 251 n 60 PRO 251 A PRO 252 n 61 PRO 252 A ASP 253 n 62 ASP 253 A PRO 254 n 63 PRO 254 A ASN 255 n 64 ASN 255 A PHE 256 n 65 PHE 256 A GLN 257 n 66 GLN 257 A SER 258 n 67 SER 258 A GLY 259 n 68 GLY 259 A CYS 260 n 69 CYS 260 A ASN 261 n 70 ASN 261 A CYS 262 n 71 CYS 262 A SER 263 n 72 SER 263 A SER 264 n 73 SER 264 A LEU 265 n 74 LEU 265 A GLY 266 n 75 GLY 266 A GLY 267 n 76 GLY 267 A CYS 268 n 77 CYS 268 A ASP 269 n 78 ASP 269 A LEU 270 n 79 LEU 270 A ASN 271 n 80 ASN 271 A ASN 272 n 81 ASN 272 A PRO 273 n 82 PRO 273 A SER 274 n 83 SER 274 A ARG 275 n 84 ARG 275 A CYS 276 n 85 CYS 276 A GLU 277 n 86 GLU 277 A CYS 278 n 87 CYS 278 A LEU 279 n 88 LEU 279 A ASP 280 n 89 ASP 280 A ASP 281 n 90 ASP 281 A LEU 282 n 91 LEU 282 A ASP 283 n 92 ASP 283 A GLU 284 n 93 GLU 284 A PRO 285 n 94 PRO 285 A THR 286 n 95 THR 286 A HIS 287 n 96 HIS 287 A PHE 288 n 97 PHE 288 A ALA 289 n 98 ALA 289 A TYR 290 n 99 TYR 290 A ASP 291 n 100 ASP 291 A ALA 292 n 101 ALA 292 A GLN 293 n 102 GLN 293 A GLY 294 n 103 GLY 294 A ARG 295 n 104 ARG 295 A VAL 296 n 105 VAL 296 A ARG 297 n 106 ARG 297 A ALA 298 n 107 ALA 298 A ASP 299 n 108 ASP 299 A THR 300 n 109 THR 300 A GLY 301 n 110 GLY 301 A ALA 302 n 111 ALA 302 A VAL 303 n 112 VAL 303 A ILE 304 n 113 ILE 304 A TYR 305 n 114 TYR 305 A GLU 306 n 115 GLU 306 A CYS 307 n 116 CYS 307 A ASN 308 n 117 ASN 308 A SER 309 n 118 SER 309 A PHE 310 n 119 PHE 310 A CYS 311 n 120 CYS 311 A SER 312 n 121 SER 312 A CYS 313 n 122 CYS 313 A SER 314 n 123 SER 314 A MET 315 n 124 MET 315 A GLU 316 n 125 GLU 316 A CYS 317 n 126 CYS 317 A PRO 318 n 127 PRO 318 A ASN 319 n 128 ASN 319 A ARG 320 n 129 ARG 320 A VAL 321 n 130 VAL 321 A VAL 322 n 131 VAL 322 A GLN 323 n 132 GLN 323 A ARG 324 n 133 ARG 324 A GLY 325 n 134 GLY 325 A ARG 326 n 135 ARG 326 A THR 327 n 136 THR 327 A LEU 328 n 137 LEU 328 A PRO 329 n 138 PRO 329 A LEU 330 n 139 LEU 330 A GLU 331 n 140 GLU 331 A ILE 332 n 141 ILE 332 A PHE 333 n 142 PHE 333 A LYS 334 n 143 LYS 334 A THR 335 n 144 THR 335 A LYS 336 n 145 LYS 336 A GLU 337 n 146 GLU 337 A LYS 338 n 147 LYS 338 A GLY 339 n 148 GLY 339 A TRP 340 n 149 TRP 340 A GLY 341 n 150 GLY 341 A VAL 342 n 151 VAL 342 A ARG 343 n 152 ARG 343 A SER 344 n 153 SER 344 A LEU 345 n 154 LEU 345 A ARG 346 n 155 ARG 346 A PHE 347 n 156 PHE 347 A ALA 348 n 157 ALA 348 A PRO 349 n 158 PRO 349 A ALA 350 n 159 ALA 350 A GLY 351 n 160 GLY 351 A THR 352 n 161 THR 352 A PHE 353 n 162 PHE 353 A ILE 354 n 163 ILE 354 A THR 355 n 164 THR 355 A CYS 356 n 165 CYS 356 A TYR 357 n 166 TYR 357 A LEU 358 n 167 LEU 358 A GLY 359 n 168 GLY 359 A GLU 360 n 169 GLU 360 A VAL 361 n 170 VAL 361 A ILE 362 n 171 ILE 362 A THR 363 n 172 THR 363 A SER 364 n 173 SER 364 A ALA 365 n 174 ALA 365 A GLU 366 n 175 GLU 366 A ALA 367 n 176 ALA 367 A ALA 368 n 177 ALA 368 A LYS 369 n 178 LYS 369 A ARG 370 n 179 ARG 370 A ASP 371 n 180 ASP 371 A LYS 372 n 181 LYS 372 A ASN 373 n 182 ASN 373 A TYR 374 n 183 TYR 374 A ASP 375 n 184 ASP 375 A ASP 376 n 185 ASP 376 A ASP 377 n 186 ASP 377 A GLY 378 n 187 GLY 378 A ILE 379 n 188 ILE 379 A THR 380 n 189 THR 380 A TYR 381 n 190 TYR 381 A LEU 382 n 191 LEU 382 A PHE 383 n 192 PHE 383 A ASP 384 n 193 ASP 384 A LEU 385 n 194 LEU 385 A ASP 386 n 195 ASP 386 A MET 387 n 196 MET 387 A PHE 388 n 197 PHE 388 A ASP 389 n 198 ASP 389 A ASP 390 n 199 ASP 390 A GLY 391 n 200 ALA 391 A ALA 392 n 201 SER 392 A ALA 393 n 202 GLU 393 A TYR 394 n 203 TYR 394 A THR 395 n 204 THR 395 A VAL 396 n 205 VAL 396 A ASP 397 n 206 ASP 397 A ALA 398 n 207 ALA 398 A GLN 399 n 208 GLN 399 A ASN 400 n 209 ASN 400 A TYR 401 n 210 TYR 401 A GLY 402 n 211 GLY 402 A ASP 403 n 212 ASP 403 A VAL 404 n 213 VAL 404 A SER 405 n 214 SER 405 A ARG 406 n 215 ARG 406 A PHE 407 n 216 PHE 407 A PHE 408 n 217 PHE 408 A ASN 409 n 218 ASN 409 A HIS 410 n 219 HIS 410 A SER 411 n 220 SER 411 A CYS 412 n 221 CYS 412 A SER 413 n 222 SER 413 A PRO 414 n 223 PRO 414 A ASN 415 n 224 ASN 415 A ILE 416 n 225 ILE 416 A ALA 417 n 226 ALA 417 A ILE 418 n 227 ILE 418 A TYR 419 n 228 TYR 419 A SER 420 n 229 SER 420 A ALA 421 n 230 ALA 421 A VAL 422 n 231 VAL 422 A ARG 423 n 232 ARG 423 A ASN 424 n 233 ASN 424 A HIS 425 n 234 HIS 425 A GLY 426 n 235 GLY 426 A PHE 427 n 236 PHE 427 A ARG 428 n 237 ARG 428 A THR 429 n 238 THR 429 A ILE 430 n 239 ILE 430 A TYR 431 n 240 TYR 431 A ASP 432 n 241 ASP 432 A LEU 433 n 242 LEU 433 A ALA 434 n 243 ALA 434 A PHE 435 n 244 PHE 435 A PHE 436 n 245 PHE 436 A ALA 437 n 246 ALA 437 A ILE 438 n 247 ILE 438 A LYS 439 n 248 LYS 439 A ASP 440 n 249 ASP 440 A ILE 441 n 250 ILE 441 A GLN 442 n 251 GLN 442 A PRO 443 n 252 PRO 443 A LEU 444 n 253 LEU 444 A GLU 445 n 254 GLU 445 A GLU 446 n 255 GLU 446 A LEU 447 n 256 LEU 447 A THR 448 n 257 THR 448 A PHE 449 n 258 PHE 449 A ASP 450 n 259 ASP 450 A TYR 451 n 260 TYR 451 A ALA 452 n 261 ALA 452 A GLY 453 n 262 GLY 453 A ALA 454 n 263 ALA 454 A LYS 455 n 264 LYS 455 A ASP 456 n 265 ASP 456 A PHE 457 n 266 PHE 457 A SER 458 n 267 SER 458 A PRO 459 n 268 PRO 459 A VAL 460 n 269 VAL 460 A GLN 461 n 270 GLN 461 A n 271 462 A n 272 463 A n 273 464 A n 274 465 A n 275 466 A n 276 467 A n 277 468 A n 278 469 A n 279 470 A n 280 471 A n 281 472 A n 282 473 A n 283 474 A n 284 475 A n 285 476 A n 286 477 A n 287 478 A n 288 479 A n 289 480 A n 290 481 A n 291 482 A n 292 483 A n 293 484 A n 294 485 A n 295 486 A n 296 487 A n 297 488 A n 298 489 A n 299 490 A author_defined_assembly 1 monomeric A CYS 260 A SG CYS 69 1_555 A ZN 501 C ZN ZN 1_555 A CYS 278 A SG CYS 87 1_555 118.3 A CYS 260 A SG CYS 69 1_555 A ZN 501 C ZN ZN 1_555 A CYS 307 A SG CYS 116 1_555 98.2 A CYS 278 A SG CYS 87 1_555 A ZN 501 C ZN ZN 1_555 A CYS 307 A SG CYS 116 1_555 114.3 A CYS 260 A SG CYS 69 1_555 A ZN 501 C ZN ZN 1_555 A CYS 311 A SG CYS 120 1_555 106.1 A CYS 278 A SG CYS 87 1_555 A ZN 501 C ZN ZN 1_555 A CYS 311 A SG CYS 120 1_555 104.4 A CYS 307 A SG CYS 116 1_555 A ZN 501 C ZN ZN 1_555 A CYS 311 A SG CYS 120 1_555 115.7 A CYS 260 A SG CYS 69 1_555 A ZN 503 E ZN ZN 1_555 A CYS 262 A SG CYS 71 1_555 101.0 A CYS 260 A SG CYS 69 1_555 A ZN 503 E ZN ZN 1_555 A CYS 268 A SG CYS 77 1_555 84.3 A CYS 262 A SG CYS 71 1_555 A ZN 503 E ZN ZN 1_555 A CYS 268 A SG CYS 77 1_555 116.5 A CYS 260 A SG CYS 69 1_555 A ZN 503 E ZN ZN 1_555 A CYS 276 A SG CYS 85 1_555 84.2 A CYS 262 A SG CYS 71 1_555 A ZN 503 E ZN ZN 1_555 A CYS 276 A SG CYS 85 1_555 109.7 A CYS 268 A SG CYS 77 1_555 A ZN 503 E ZN ZN 1_555 A CYS 276 A SG CYS 85 1_555 133.7 A CYS 268 A SG CYS 77 1_555 A ZN 502 D ZN ZN 1_555 A CYS 307 A SG CYS 116 1_555 112.0 A CYS 268 A SG CYS 77 1_555 A ZN 502 D ZN ZN 1_555 A CYS 313 A SG CYS 122 1_555 108.3 A CYS 307 A SG CYS 116 1_555 A ZN 502 D ZN ZN 1_555 A CYS 313 A SG CYS 122 1_555 124.6 A CYS 268 A SG CYS 77 1_555 A ZN 502 D ZN ZN 1_555 A CYS 317 A SG CYS 126 1_555 89.0 A CYS 307 A SG CYS 116 1_555 A ZN 502 D ZN ZN 1_555 A CYS 317 A SG CYS 126 1_555 125.2 A CYS 313 A SG CYS 122 1_555 A ZN 502 D ZN ZN 1_555 A CYS 317 A SG CYS 126 1_555 91.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 222 A N THR 31 A O ILE 332 A O ILE 141 A N PHE 333 A N PHE 142 A O GLY 341 A O GLY 150 A N GLN 238 A N GLN 47 A O GLY 402 A O GLY 211 A N ARG 244 A N ARG 53 A O VAL 361 A O VAL 170 A N ILE 362 A N ILE 171 A O THR 395 A O THR 204 A O VAL 396 A O VAL 205 A N PHE 383 A N PHE 192 A N ILE 304 A N ILE 113 A O VAL 422 A O VAL 231 A N TYR 419 A N TYR 228 A O ALA 434 A O ALA 243 A O PHE 435 A O PHE 244 A N THR 355 A N THR 164 A N ASN 409 A N ASN 218 A O PHE 449 A O PHE 258 1 A NI 504 F NI 1 A CB ALA 391 A CB ALA 200 1 Y 1 A OG SER 392 A OG SER 201 1 Y 1 A CG GLU 393 A CG GLU 202 1 Y 1 A CD GLU 393 A CD GLU 202 1 Y 1 A OE1 GLU 393 A OE1 GLU 202 1 Y 1 A OE2 GLU 393 A OE2 GLU 202 1 Y 1 A SER 192 A SER 1 1 Y 1 A SER 462 A SER 271 1 Y 1 A GLN 463 A GLN 272 1 Y 1 A LYS 464 A LYS 273 1 Y 1 A SER 465 A SER 274 1 Y 1 A GLN 466 A GLN 275 1 Y 1 A GLN 467 A GLN 276 1 Y 1 A ASN 468 A ASN 277 1 Y 1 A ARG 469 A ARG 278 1 Y 1 A ILE 470 A ILE 279 1 Y 1 A SER 471 A SER 280 1 Y 1 A LYS 472 A LYS 281 1 Y 1 A LEU 473 A LEU 282 1 Y 1 A ARG 474 A ARG 283 1 Y 1 A ARG 475 A ARG 284 1 Y 1 A GLN 476 A GLN 285 1 Y 1 A CYS 477 A CYS 286 1 Y 1 A LYS 478 A LYS 287 1 Y 1 A CYS 479 A CYS 288 1 Y 1 A GLY 480 A GLY 289 1 Y 1 A SER 481 A SER 290 1 Y 1 A ALA 482 A ALA 291 1 Y 1 A ASN 483 A ASN 292 1 Y 1 A CYS 484 A CYS 293 1 Y 1 A ARG 485 A ARG 294 1 Y 1 A GLY 486 A GLY 295 1 Y 1 A TRP 487 A TRP 296 1 Y 1 A LEU 488 A LEU 297 1 Y 1 A PHE 489 A PHE 298 1 Y 1 A GLY 490 A GLY 299 1 Y 1 -9.48 1.50 119.30 109.82 A A A C N CA GLU PRO PRO 284 285 285 Y 1 A A O O PHE PHE 457 457 2.14 1_555 12_555 1 A ASP 228 -132.92 -156.31 1 A ASP 236 -68.71 63.57 1 A PHE 256 -95.75 52.43 1 A CYS 262 -82.55 33.46 1 A SER 264 -67.09 -92.02 1 A LEU 265 -108.71 -72.45 1 A ASP 269 59.36 104.09 1 A LEU 270 -65.50 6.30 1 A ASN 272 -115.98 56.42 1 A ASP 280 -56.62 -7.86 1 A LEU 282 175.84 124.36 1 A GLU 284 -149.05 -112.14 1 A HIS 287 173.55 159.84 1 A ARG 297 -46.69 153.79 1 A PRO 318 -46.81 -4.36 1 A VAL 321 -52.41 -70.36 1 A THR 327 -145.05 -12.91 1 A ILE 354 -123.48 -55.68 1 A THR 355 175.89 160.74 1 A SER 364 -53.49 -6.70 1 A ALA 365 -76.75 -73.16 1 A ASP 375 -89.52 -129.12 1 A TYR 381 -60.93 55.96 1 A PHE 388 -115.92 -121.07 1 A SER 413 -115.19 63.30 1 A ARG 428 -90.18 40.17 1 A ASP 450 -170.19 92.46 1 A ASP 456 -161.91 -16.54 1 A PHE 457 -78.71 -90.06 1 A SER 458 -52.45 -6.49 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top -7.842 -6.896 0 -7.842 0 15.683 0.2863000 0.2159000 3.0 50.0 560 6528 6524 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT Engh & Huber 3.0 50.0 51 2196 9 0 2136 3.167 1.5 5.235 2 4.586 2 6.780 2.5 3.0 50.0 1MVX 6530 6530 0.0 0.0 1 92.4 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS structure of the SET domain histone lysine methyltransferase Clr4 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N 5 N N A ASP 195 A ASP 4 HELX_P A GLU 215 A GLU 24 1 1 21 A ASP 253 A ASP 62 HELX_P A GLN 257 A GLN 66 5 2 5 A ARG 320 A ARG 129 HELX_P A GLY 325 A GLY 134 1 3 6 A SER 364 A SER 173 HELX_P A LYS 372 A LYS 181 1 4 9 A ASP 403 A ASP 212 HELX_P A PHE 408 A PHE 217 5 5 6 metalc 2.268 A CYS 260 A SG CYS 69 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.694 A CYS 260 A SG CYS 69 1_555 A ZN 503 E ZN ZN 1_555 metalc 2.128 A CYS 262 A SG CYS 71 1_555 A ZN 503 E ZN ZN 1_555 metalc 2.263 A CYS 268 A SG CYS 77 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.704 A CYS 268 A SG CYS 77 1_555 A ZN 503 E ZN ZN 1_555 metalc 2.558 A CYS 276 A SG CYS 85 1_555 A ZN 503 E ZN ZN 1_555 metalc 2.291 A CYS 278 A SG CYS 87 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.491 A CYS 307 A SG CYS 116 1_555 A ZN 501 C ZN ZN 1_555 metalc 1.956 A CYS 307 A SG CYS 116 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.367 A CYS 311 A SG CYS 120 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.247 A CYS 313 A SG CYS 122 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.367 A CYS 317 A SG CYS 126 1_555 A ZN 502 D ZN ZN 1_555 TRANSFERASE lysine methyltransferase, clr4, set-domain, transferase CLR4_SCHPO UNP 1 192 O60016 SKLDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLN NPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAG TFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIY DLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLFG 192 490 1MVX 192 490 O60016 A 1 1 299 3 2 4 4 2 parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel A VAL 221 A VAL 30 A VAL 224 A VAL 33 A LEU 330 A LEU 139 A LYS 334 A LYS 143 A TRP 340 A TRP 149 A SER 344 A SER 153 A GLN 238 A GLN 47 A PHE 239 A PHE 48 A TYR 401 A TYR 210 A GLY 402 A GLY 211 A ARG 244 A ARG 53 A LEU 245 A LEU 54 A GLU 360 A GLU 169 A THR 363 A THR 172 A TYR 394 A TYR 203 A ASP 397 A ASP 206 A LEU 382 A LEU 191 A ASP 384 A ASP 193 A VAL 303 A VAL 112 A TYR 305 A TYR 114 A ILE 416 A ILE 225 A VAL 422 A VAL 231 A ASP 432 A ASP 241 A ALA 437 A ALA 246 A PHE 353 A PHE 162 A CYS 356 A CYS 165 A ASN 409 A ASN 218 A HIS 410 A HIS 219 A THR 448 A THR 257 A PHE 449 A PHE 258 BINDING SITE FOR RESIDUE SO4 A 601 A SO4 601 Software 4 BINDING SITE FOR RESIDUE ZN A 501 A ZN 501 Software 4 BINDING SITE FOR RESIDUE ZN A 502 A ZN 502 Software 4 BINDING SITE FOR RESIDUE ZN A 503 A ZN 503 Software 4 BINDING SITE FOR RESIDUE NI A 504 A NI 504 Software 4 A GLN 257 A GLN 66 4 1_555 A ASN 308 A ASN 117 4 1_555 A SER 309 A SER 118 4 1_555 A ARG 423 A ARG 232 4 1_555 A CYS 260 A CYS 69 4 1_555 A CYS 278 A CYS 87 4 1_555 A CYS 307 A CYS 116 4 1_555 A CYS 311 A CYS 120 4 1_555 A CYS 268 A CYS 77 4 1_555 A CYS 307 A CYS 116 4 1_555 A CYS 313 A CYS 122 4 1_555 A CYS 317 A CYS 126 4 1_555 A CYS 260 A CYS 69 4 1_555 A CYS 262 A CYS 71 4 1_555 A CYS 268 A CYS 77 4 1_555 A CYS 276 A CYS 85 4 1_555 A ARG 206 A ARG 15 4 1_555 A ARG 206 A ARG 15 4 8_675 A ARG 210 A ARG 19 4 8_675 A ARG 210 A ARG 19 4 1_555 178 P 61 2 2