0.00987
0.00000
0.00000
0.00000
0.00987
0.00000
0.00000
0.00000
0.02222
0.00000
0.00000
0.00000
Barrett, T.E.
Savva, R.
Panayotou, G.
Brown, T.
Barlow, T.
Jiricny, J.
Pearl, L.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
101.350
101.350
45.010
C5 H11 O7 P
214.110
2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE
ABASIC DEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
R
C
N
10
N
O
N
11
N
C
N
12
S
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
N
N
26
S
C
N
27
N
C
N
28
N
O
N
29
N
C
N
30
N
O
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
C
N
44
N
C
N
45
N
N
N
46
N
C
N
47
N
N
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
O
N
113
N
P
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
C
N
118
R
C
N
119
N
O
N
120
S
C
N
121
N
O
N
122
N
C
N
123
R
C
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
Y
128
N
C
N
129
N
N
Y
130
N
N
Y
131
N
C
Y
132
N
N
Y
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
N
C
N
159
R
C
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
Y
194
N
N
Y
195
N
C
Y
196
N
N
Y
197
N
C
N
198
N
C
N
199
N
O
N
200
N
N
N
201
N
C
N
202
N
N
N
203
N
N
Y
204
N
C
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
P
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
C
N
225
R
C
N
226
N
O
N
227
S
C
N
228
N
O
N
229
N
C
N
230
R
C
N
231
N
N
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
N
Y
311
N
C
Y
312
N
C
Y
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
S
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
N
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
S
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
O
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
R
C
N
476
N
O
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
N
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
N
526
N
O
N
527
N
O
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
N
N
540
S
C
N
541
N
C
N
542
N
O
N
543
N
C
N
544
N
C
N
545
N
C
N
546
N
O
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
Y
130
N
sing
Y
131
N
sing
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
sing
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
doub
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
doub
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
Y
490
N
doub
Y
491
N
sing
Y
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
sing
Y
499
N
doub
N
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
Y
518
N
doub
Y
519
N
sing
Y
520
N
sing
N
521
N
sing
Y
522
N
doub
N
523
N
sing
Y
524
N
doub
N
525
N
sing
Y
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
doub
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
92
117
129
10.1016/S0092-8674(00)80904-6
9489705
Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions.
1998
10.2210/pdb1mwi/pdb
pdb_00001mwi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-08-15
MARRESEARCH
Si 111 channel
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX7.2
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX7.2
3571.293
5'-D(*CP*GP*CP*GP*AP*GP*(AAB)P*TP*CP*GP*CP*G)-3'
1
syn
polymer
18696.352
G/U mismatch-specific DNA glycosylase
3.2.2.-
1
man
polymer
18.015
water
122
nat
water
MUG DNA GLYCOSYLASE, Mismatch-specific uracil DNA-glycosylase, UDG
no
yes
(DC)(DG)(DC)(DG)(DA)(DG)(AAB)(DT)(DC)(DG)(DC)(DG)
CGCGAGXTCGCG
D
polydeoxyribonucleotide
no
no
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV
SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
QALVVRGR
MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV
SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
QALVVRGR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
MUG
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21DE3
PLASMID
pTRC99A
1
2.58
52.25
MICROBATCH
4.6
PEG 4000, Sodium acetate,, pH 4.6, Microbatch, temperature 289K
289
PEG 4000
1
Sodium acetate
1
Sodium acetate
2
-10.087
1
19
D
1
D
6
4.586
D_DC1:DG6_D
1
-14.142
0.464
0.419
-0.209
9.882
D
2
D
5
70.434
D_DG2:DA5_D
2
11.047
-1.302
-0.384
-4.278
-2.463
1
19
D
3
D
4
5.504
D_DC3:DG4_D
3
-14.209
0.452
-0.149
-0.127
2.463
1
19
D
4
D
3
5.504
D_DG4:DC3_D
4
-14.209
-0.452
-0.149
-0.127
-9.882
D
5
D
2
-70.434
D_DA5:DG2_D
5
-11.047
1.302
0.384
4.278
10.087
1
19
D
6
D
1
4.586
D_DG6:DC1_D
6
-14.142
-0.464
0.419
-0.209
-0.742
178.409
D
D
1
2
5.502
D
D
6
5
-0.309
10.996
2.215
-3.246
DD_DC1DG2:DA5DG6_DD
1
-170.875
85.510
159.074
-1.620
-1.060
-1.952
-179.916
D
D
2
3
-54.450
D
D
5
4
-1.895
108.898
0.574
3.700
DD_DG2DC3:DG4DA5_DD
2
-140.016
-70.009
-176.339
-1.831
0.311
2.859
34.199
D
D
3
4
32.944
D
D
4
3
3.058
18.402
0.000
0.492
DD_DC3DG4:DC3DG4_DD
3
0.000
0.000
28.952
-2.026
0.000
3.218
75.787
D
D
4
5
2.133
D
D
3
2
3.273
2.619
1.952
-1.757
DD_DG4DA5:DG2DC3_DD
4
-0.084
0.068
75.748
-1.508
-1.591
0.143
-11.448
D
D
5
6
-49.230
D
D
2
1
3.097
8.626
-0.743
2.323
DD_DA5DG6:DC1DG2_DD
5
-1.593
-9.091
-7.364
-19.079
-5.099
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Non-polymer description
Data collection
Database references
Derived calculations
1
0
2002-10-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2014-07-09
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
Crystal structure of native MUG
BIOMOLECULE
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 2 CHAIN(S). The second strand of the
DNA molecule is generated by applying symmetry operator
7_556 : y, x, 1-z, to D1P and bases 8-12, and applying
symmetry operator 7_557 : y, x, 2-z, to bases 1-6.
RCSB
Y
RCSB
2002-09-30
REL
HOH
water
HOH
26
3
HOH
HOH
26
D
HOH
27
3
HOH
HOH
27
D
HOH
36
3
HOH
HOH
36
D
HOH
38
3
HOH
HOH
38
D
HOH
40
3
HOH
HOH
40
D
HOH
43
3
HOH
HOH
43
D
HOH
44
3
HOH
HOH
44
D
HOH
46
3
HOH
HOH
46
D
HOH
49
3
HOH
HOH
49
D
HOH
61
3
HOH
HOH
61
D
HOH
67
3
HOH
HOH
67
D
HOH
73
3
HOH
HOH
73
D
HOH
77
3
HOH
HOH
77
D
HOH
83
3
HOH
HOH
83
D
HOH
89
3
HOH
HOH
89
D
HOH
94
3
HOH
HOH
94
D
HOH
104
3
HOH
HOH
104
D
HOH
109
3
HOH
HOH
109
D
HOH
112
3
HOH
HOH
112
D
HOH
120
3
HOH
HOH
120
D
HOH
1
3
HOH
HOH
169
A
HOH
2
3
HOH
HOH
170
A
HOH
3
3
HOH
HOH
171
A
HOH
4
3
HOH
HOH
172
A
HOH
5
3
HOH
HOH
173
A
HOH
6
3
HOH
HOH
174
A
HOH
7
3
HOH
HOH
175
A
HOH
8
3
HOH
HOH
176
A
HOH
9
3
HOH
HOH
177
A
HOH
10
3
HOH
HOH
178
A
HOH
11
3
HOH
HOH
179
A
HOH
12
3
HOH
HOH
180
A
HOH
13
3
HOH
HOH
181
A
HOH
14
3
HOH
HOH
182
A
HOH
15
3
HOH
HOH
183
A
HOH
16
3
HOH
HOH
184
A
HOH
17
3
HOH
HOH
185
A
HOH
18
3
HOH
HOH
186
A
HOH
19
3
HOH
HOH
187
A
HOH
20
3
HOH
HOH
188
A
HOH
21
3
HOH
HOH
189
A
HOH
22
3
HOH
HOH
190
A
HOH
23
3
HOH
HOH
191
A
HOH
24
3
HOH
HOH
192
A
HOH
25
3
HOH
HOH
193
A
HOH
28
3
HOH
HOH
194
A
HOH
29
3
HOH
HOH
195
A
HOH
30
3
HOH
HOH
196
A
HOH
31
3
HOH
HOH
197
A
HOH
32
3
HOH
HOH
198
A
HOH
33
3
HOH
HOH
199
A
HOH
34
3
HOH
HOH
200
A
HOH
35
3
HOH
HOH
201
A
HOH
37
3
HOH
HOH
202
A
HOH
39
3
HOH
HOH
203
A
HOH
41
3
HOH
HOH
204
A
HOH
42
3
HOH
HOH
205
A
HOH
45
3
HOH
HOH
206
A
HOH
47
3
HOH
HOH
207
A
HOH
48
3
HOH
HOH
208
A
HOH
50
3
HOH
HOH
209
A
HOH
51
3
HOH
HOH
210
A
HOH
52
3
HOH
HOH
211
A
HOH
53
3
HOH
HOH
212
A
HOH
54
3
HOH
HOH
213
A
HOH
55
3
HOH
HOH
214
A
HOH
56
3
HOH
HOH
215
A
HOH
57
3
HOH
HOH
216
A
HOH
58
3
HOH
HOH
217
A
HOH
59
3
HOH
HOH
218
A
HOH
60
3
HOH
HOH
219
A
HOH
62
3
HOH
HOH
220
A
HOH
63
3
HOH
HOH
221
A
HOH
64
3
HOH
HOH
222
A
HOH
65
3
HOH
HOH
223
A
HOH
66
3
HOH
HOH
224
A
HOH
68
3
HOH
HOH
225
A
HOH
69
3
HOH
HOH
226
A
HOH
70
3
HOH
HOH
227
A
HOH
71
3
HOH
HOH
228
A
HOH
72
3
HOH
HOH
229
A
HOH
74
3
HOH
HOH
230
A
HOH
75
3
HOH
HOH
231
A
HOH
76
3
HOH
HOH
232
A
HOH
78
3
HOH
HOH
233
A
HOH
79
3
HOH
HOH
234
A
HOH
80
3
HOH
HOH
235
A
HOH
81
3
HOH
HOH
236
A
HOH
82
3
HOH
HOH
237
A
HOH
84
3
HOH
HOH
238
A
HOH
85
3
HOH
HOH
239
A
HOH
86
3
HOH
HOH
240
A
HOH
87
3
HOH
HOH
241
A
HOH
88
3
HOH
HOH
242
A
HOH
90
3
HOH
HOH
243
A
HOH
91
3
HOH
HOH
244
A
HOH
92
3
HOH
HOH
245
A
HOH
93
3
HOH
HOH
246
A
HOH
95
3
HOH
HOH
247
A
HOH
96
3
HOH
HOH
248
A
HOH
97
3
HOH
HOH
249
A
HOH
98
3
HOH
HOH
250
A
HOH
99
3
HOH
HOH
251
A
HOH
100
3
HOH
HOH
252
A
HOH
101
3
HOH
HOH
253
A
HOH
102
3
HOH
HOH
254
A
HOH
103
3
HOH
HOH
255
A
HOH
105
3
HOH
HOH
256
A
HOH
106
3
HOH
HOH
257
A
HOH
107
3
HOH
HOH
258
A
HOH
108
3
HOH
HOH
259
A
HOH
110
3
HOH
HOH
260
A
HOH
111
3
HOH
HOH
261
A
HOH
113
3
HOH
HOH
262
A
HOH
114
3
HOH
HOH
263
A
HOH
115
3
HOH
HOH
264
A
HOH
116
3
HOH
HOH
265
A
HOH
117
3
HOH
HOH
266
A
HOH
118
3
HOH
HOH
267
A
HOH
119
3
HOH
HOH
268
A
HOH
121
3
HOH
HOH
269
A
HOH
122
3
HOH
HOH
270
A
CYT
1
n
1
DC
1
D
GUA
2
n
2
DG
2
D
CYT
3
n
3
DC
3
D
GUA
4
n
4
DG
4
D
ADE
5
n
5
DA
5
D
GUA
6
n
6
DG
6
D
APR
7
n
7
AAB
7
D
THY
8
n
8
DT
8
D
CYT
9
n
9
DC
9
D
GUA
10
n
10
DG
10
D
CYT
11
n
11
DC
11
D
GUA
12
n
12
DG
12
D
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
GLU
3
n
3
GLU
3
A
ASP
4
n
4
ASP
4
A
ILE
5
n
5
ILE
5
A
LEU
6
n
6
LEU
6
A
ALA
7
n
7
ALA
7
A
PRO
8
n
8
PRO
8
A
GLY
9
n
9
GLY
9
A
LEU
10
n
10
LEU
10
A
ARG
11
n
11
ARG
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
PHE
14
n
14
PHE
14
A
CYS
15
n
15
CYS
15
A
GLY
16
n
16
GLY
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
SER
23
n
23
SER
23
A
ALA
24
n
24
ALA
24
A
GLY
25
n
25
GLY
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
PHE
28
n
28
PHE
28
A
PRO
29
n
29
PRO
29
A
PHE
30
n
30
PHE
30
A
ALA
31
n
31
ALA
31
A
HIS
32
n
32
HIS
32
A
PRO
33
n
33
PRO
33
A
ALA
34
n
34
ALA
34
A
ASN
35
n
35
ASN
35
A
ARG
36
n
36
ARG
36
A
PHE
37
n
37
PHE
37
A
TRP
38
n
38
TRP
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
ILE
41
n
41
ILE
41
A
TYR
42
n
42
TYR
42
A
GLN
43
n
43
GLN
43
A
ALA
44
n
44
ALA
44
A
GLY
45
n
45
GLY
45
A
PHE
46
n
46
PHE
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
ARG
49
n
49
ARG
49
A
GLN
50
n
50
GLN
50
A
LEU
51
n
51
LEU
51
A
LYS
52
n
52
LYS
52
A
PRO
53
n
53
PRO
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
ALA
56
n
56
ALA
56
A
GLN
57
n
57
GLN
57
A
HIS
58
n
58
HIS
58
A
LEU
59
n
59
LEU
59
A
LEU
60
n
60
LEU
60
A
ASP
61
n
61
ASP
61
A
TYR
62
n
62
TYR
62
A
ARG
63
n
63
ARG
63
A
CYS
64
n
64
CYS
64
A
GLY
65
n
65
GLY
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
LYS
68
n
68
LYS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
ASP
71
n
71
ASP
71
A
ARG
72
n
72
ARG
72
A
PRO
73
n
73
PRO
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
GLN
76
n
76
GLN
76
A
ALA
77
n
77
ALA
77
A
ASN
78
n
78
ASN
78
A
GLU
79
n
79
GLU
79
A
VAL
80
n
80
VAL
80
A
SER
81
n
81
SER
81
A
LYS
82
n
82
LYS
82
A
GLN
83
n
83
GLN
83
A
GLU
84
n
84
GLU
84
A
LEU
85
n
85
LEU
85
A
HIS
86
n
86
HIS
86
A
ALA
87
n
87
ALA
87
A
GLY
88
n
88
GLY
88
A
GLY
89
n
89
GLY
89
A
ARG
90
n
90
ARG
90
A
LYS
91
n
91
LYS
91
A
LEU
92
n
92
LEU
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
LYS
95
n
95
LYS
95
A
ILE
96
n
96
ILE
96
A
GLU
97
n
97
GLU
97
A
ASP
98
n
98
ASP
98
A
TYR
99
n
99
TYR
99
A
GLN
100
n
100
GLN
100
A
PRO
101
n
101
PRO
101
A
GLN
102
n
102
GLN
102
A
ALA
103
n
103
ALA
103
A
LEU
104
n
104
LEU
104
A
ALA
105
n
105
ALA
105
A
ILE
106
n
106
ILE
106
A
LEU
107
n
107
LEU
107
A
GLY
108
n
108
GLY
108
A
LYS
109
n
109
LYS
109
A
GLN
110
n
110
GLN
110
A
ALA
111
n
111
ALA
111
A
TYR
112
n
112
TYR
112
A
GLU
113
n
113
GLU
113
A
GLN
114
n
114
GLN
114
A
GLY
115
n
115
GLY
115
A
PHE
116
n
116
PHE
116
A
SER
117
n
117
SER
117
A
GLN
118
n
118
GLN
118
A
ARG
119
n
119
ARG
119
A
GLY
120
n
120
GLY
120
A
ALA
121
n
121
ALA
121
A
GLN
122
n
122
GLN
122
A
TRP
123
n
123
TRP
123
A
GLY
124
n
124
GLY
124
A
LYS
125
n
125
LYS
125
A
GLN
126
n
126
GLN
126
A
THR
127
n
127
THR
127
A
LEU
128
n
128
LEU
128
A
THR
129
n
129
THR
129
A
ILE
130
n
130
ILE
130
A
GLY
131
n
131
GLY
131
A
SER
132
n
132
SER
132
A
THR
133
n
133
THR
133
A
GLN
134
n
134
GLN
134
A
ILE
135
n
135
ILE
135
A
TRP
136
n
136
TRP
136
A
VAL
137
n
137
VAL
137
A
LEU
138
n
138
LEU
138
A
PRO
139
n
139
PRO
139
A
ASN
140
n
140
ASN
140
A
PRO
141
n
141
PRO
141
A
SER
142
n
142
SER
142
A
GLY
143
n
143
GLY
143
A
LEU
144
n
144
LEU
144
A
SER
145
n
145
SER
145
A
ARG
146
n
146
ARG
146
A
VAL
147
n
147
VAL
147
A
SER
148
n
148
SER
148
A
LEU
149
n
149
LEU
149
A
GLU
150
n
150
GLU
150
A
LYS
151
n
151
LYS
151
A
LEU
152
n
152
LEU
152
A
VAL
153
n
153
VAL
153
A
GLU
154
n
154
GLU
154
A
ALA
155
n
155
ALA
155
A
TYR
156
n
156
TYR
156
A
ARG
157
n
157
ARG
157
A
GLU
158
n
158
GLU
158
A
LEU
159
n
159
LEU
159
A
ASP
160
n
160
ASP
160
A
GLN
161
n
161
GLN
161
A
ALA
162
n
162
ALA
162
A
LEU
163
n
163
LEU
163
A
VAL
164
n
164
VAL
164
A
VAL
165
n
165
VAL
165
A
n
166
166
A
n
167
167
A
n
168
168
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
65
B
O
GLY
65
A
N
PHE
14
B
N
PHE
14
A
N
VAL
13
B
N
VAL
13
A
O
ALA
105
B
O
ALA
105
A
N
ILE
106
B
N
ILE
106
A
O
TRP
136
B
O
TRP
136
A
O
VAL
137
B
O
VAL
137
A
N
GLY
124
B
N
GLY
124
1
A
CG
MET
1
B
CG
MET
1
1
Y
1
A
SD
MET
1
B
SD
MET
1
1
Y
1
A
CE
MET
1
B
CE
MET
1
1
Y
1
A
CG
LYS
109
B
CG
LYS
109
1
Y
1
A
CD
LYS
109
B
CD
LYS
109
1
Y
1
A
CE
LYS
109
B
CE
LYS
109
1
Y
1
A
NZ
LYS
109
B
NZ
LYS
109
1
Y
1
A
CG
ARG
119
B
CG
ARG
119
1
Y
1
A
CD
ARG
119
B
CD
ARG
119
1
Y
1
A
NE
ARG
119
B
NE
ARG
119
1
Y
1
A
CZ
ARG
119
B
CZ
ARG
119
1
Y
1
A
NH1
ARG
119
B
NH1
ARG
119
1
Y
1
A
NH2
ARG
119
B
NH2
ARG
119
1
Y
1
A
CG
GLU
150
B
CG
GLU
150
1
Y
1
A
CD
GLU
150
B
CD
GLU
150
1
Y
1
A
OE1
GLU
150
B
OE1
GLU
150
1
Y
1
A
OE2
GLU
150
B
OE2
GLU
150
1
Y
1
A
CG
LYS
151
B
CG
LYS
151
1
Y
1
A
CD
LYS
151
B
CD
LYS
151
1
Y
1
A
CE
LYS
151
B
CE
LYS
151
1
Y
1
A
NZ
LYS
151
B
NZ
LYS
151
1
Y
1
A
ARG
166
B
ARG
166
1
Y
1
A
GLY
167
B
GLY
167
1
Y
1
A
ARG
168
B
ARG
168
1
Y
1
2.19
0.30
108.30
110.49
D
D
D
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
3.58
0.30
108.30
111.88
D
D
D
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
2.18
0.30
108.30
110.48
D
D
D
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
2.77
0.30
108.30
111.07
D
D
D
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
D
D
C3'
C2'
DA
DA
5
5
-0.065
0.008
1.516
1.451
N
1
D
D
C5'
C4'
DG
DG
6
6
0.046
0.007
1.512
1.558
N
1
A
VAL
164
-59.24
170.53
PROTEIN_REP.PARAM
TOPHCSDX.PRO
WATER.PAR
WATER.TOP
DNA2.PAR
DNA2.TOP
23.4
0.00
0.00
0.00
0.00
0.00
0.00
NO ELECTRON DENSITY IS OBSERVED FOR RESDUES 166 TO 168. RESIDUES A1, A109, A150 AND A151 WERE REFINED AS ALANINE. D1P CORRESPONDS TO AN ABASIC SITE
0.28
0.015
0.21
0.2482
0.2482
2.35
14.93
477
10144
9878
4.8
99.2
RANDOM
1604690.93
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Native MUG
Engh & Huber
0.30
5.00
0.37
2.35
14.93
122
1629
0
236
1271
0.007
1.1
26.5
1.19
1.62
1.50
2.53
2.00
3.50
2.00
4.80
2.50
0.29
0.042
0.28
2.50
64
1102
8
5.3
95.1
37.3
2.35
20
1MWI
10144
2.0
2.0
0.061
0.061
1
15
4.5
99.2
0.2
2.35
2.55
0.2
1
4.5
95.2
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.851
Crystal structure of a MUG-DNA product complex
1
N
N
2
N
N
3
N
N
3
N
N
One asymmetric unit consists of a single protein molecule and 1 strand of DNA. The second strand is generated by x,y,-z (translation 0,0,1) applied to APR,THY,CYT,GUA,
CYT,GUA and x,y,-z (translation 0,0,2) applied to the remaining nucleic acids.
A
GLY
20
B
GLY
20
HELX_P
A
GLY
27
B
GLY
27
1
1
8
A
ARG
36
B
ARG
36
HELX_P
A
ALA
44
B
ALA
44
1
2
9
A
LYS
52
B
LYS
52
HELX_P
A
TYR
62
B
TYR
62
5
3
11
A
GLN
76
B
GLN
76
HELX_P
A
VAL
80
B
VAL
80
5
4
5
A
SER
81
B
SER
81
HELX_P
A
GLN
100
B
GLN
100
1
5
20
A
GLY
108
B
GLY
108
HELX_P
A
SER
117
B
SER
117
1
6
10
A
SER
148
B
SER
148
HELX_P
A
LEU
163
B
LEU
163
1
7
16
covale
1.619
one
D
DG
6
A
O3'
DG
6
1_555
D
AAB
7
A
P
AAB
7
1_555
covale
1.611
one
D
AAB
7
A
O3'
AAB
7
1_555
D
DT
8
A
P
DT
8
1_555
hydrog
WATSON-CRICK
D
DC
1
A
N3
DC
1
1_555
D
DG
6
A
N1
DG
6
7_557
hydrog
WATSON-CRICK
D
DC
1
A
N4
DC
1
1_555
D
DG
6
A
O6
DG
6
7_557
hydrog
WATSON-CRICK
D
DC
1
A
O2
DC
1
1_555
D
DG
6
A
N2
DG
6
7_557
hydrog
DG-DA MISPAIR
D
DG
2
A
O6
DG
2
1_555
D
DA
5
A
N6
DA
5
7_557
hydrog
WATSON-CRICK
D
DC
3
A
N3
DC
3
1_555
D
DG
4
A
N1
DG
4
7_557
hydrog
WATSON-CRICK
D
DC
3
A
N4
DC
3
1_555
D
DG
4
A
O6
DG
4
7_557
hydrog
WATSON-CRICK
D
DC
3
A
O2
DC
3
1_555
D
DG
4
A
N2
DG
4
7_557
hydrog
WATSON-CRICK
D
DG
4
A
N1
DG
4
1_555
D
DC
3
A
N3
DC
3
7_557
hydrog
WATSON-CRICK
D
DG
4
A
N2
DG
4
1_555
D
DC
3
A
O2
DC
3
7_557
hydrog
WATSON-CRICK
D
DG
4
A
O6
DG
4
1_555
D
DC
3
A
N4
DC
3
7_557
hydrog
DA-DG MISPAIR
D
DA
5
A
N6
DA
5
1_555
D
DG
2
A
O6
DG
2
7_557
hydrog
WATSON-CRICK
D
DG
6
A
N1
DG
6
1_555
D
DC
1
A
N3
DC
1
7_557
hydrog
WATSON-CRICK
D
DG
6
A
N2
DG
6
1_555
D
DC
1
A
O2
DC
1
7_557
hydrog
WATSON-CRICK
D
DG
6
A
O6
DG
6
1_555
D
DC
1
A
N4
DC
1
7_557
HYDROLASE/DNA
DNA-glycosylase, nucleotide flipping, abasic site, HYDROLASE-DNA COMPLEX
MUG_ECOLI
UNP
2
1
P0A9H1
1MWI
PDB
1
1MWI
1
168
1MWI
1
168
P0A9H1
A
1
1
168
1
12
1MWI
1
12
1MWI
D
2
1
12
5
parallel
parallel
parallel
anti-parallel
A
CYS
64
B
CYS
64
A
LYS
68
B
LYS
68
A
VAL
12
B
VAL
12
A
GLY
16
B
GLY
16
A
ALA
103
B
ALA
103
A
LEU
107
B
LEU
107
A
THR
133
B
THR
133
A
LEU
138
B
LEU
138
A
GLY
124
B
GLY
124
A
ILE
130
B
ILE
130
94
P 42 21 2