0.009804 0.000000 0.000000 0.000000 0.009804 0.000000 0.000000 0.000000 0.022157 0.00000 0.00000 0.00000 Barrett, T.E. Scharer, O. Savva, R. Brown, T. Jiricny, J. Verdine, G.L. Pearl, L.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 101.996 101.996 45.133 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N P N 233 N O N 234 N O N 235 N O N 236 N C N 237 R C N 238 N O N 239 S C N 240 N O N 241 N C N 242 R C N 243 N N N 244 N C N 245 N O N 246 N N N 247 N C N 248 N O N 249 N C N 250 N C N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N N N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 N C N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C Y 318 N C Y 319 N N Y 320 N C Y 321 N C Y 322 N N N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N O N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 S C N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N C N 389 N N N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N C N 412 N S N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C N 454 N C N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C N 471 N O N 472 N O N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 R C N 485 N O N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N N N 498 S C N 499 N C N 500 N O N 501 N C Y 502 N C Y 503 N C Y 504 N C Y 505 N N Y 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N C N 511 N O N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N N N 525 S C N 526 N C N 527 N O N 528 N C Y 529 N C Y 530 N C Y 531 N C Y 532 N C Y 533 N C Y 534 N C N 535 N O N 536 N O N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N N N 549 S C N 550 N C N 551 N O N 552 N C N 553 N C N 554 N C N 555 N O N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N sing Y 324 N doub Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N doub N 427 N sing N 428 N sing N 429 N sing N 430 N sing Y 431 N doub Y 432 N sing Y 433 N sing N 434 N sing Y 435 N doub N 436 N sing Y 437 N doub N 438 N sing Y 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N doub N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N doub N 496 N sing N 497 N sing N 498 N sing N 499 N sing Y 500 N doub Y 501 N sing Y 502 N sing N 503 N sing Y 504 N doub Y 505 N sing Y 506 N sing N 507 N sing Y 508 N sing Y 509 N doub N 510 N sing Y 511 N doub N 512 N sing Y 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N doub N 524 N sing N 525 N sing N 526 N sing N 527 N sing Y 528 N doub Y 529 N sing Y 530 N sing N 531 N sing Y 532 N doub N 533 N sing Y 534 N doub N 535 N sing Y 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N doub N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing UK Embo J. EMJODG 0897 0261-4189 18 6599 6609 10.1093/emboj/18.23.6599 10581234 Crystal Structure of a thwarted mismatch glycosylase DNA repair complex 1999 10.2210/pdb1mwj/pdb pdb_00001mwj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1998-02-15 MARRESEARCH Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.488 1.0 PX7.2 SRS 1.488 SYNCHROTRON SRS BEAMLINE PX7.2 3665.365 5'-D(*CP*GP*CP*GP*A*GP*(DU)P*TP*CP*GP*CP*G)-3' 1 syn polymer 18696.352 G/U mismatch-specific DNA glycosylase 3.2.2.- 1 man polymer 18.015 water 58 nat water MUG DNA GLYCOSYLASE, Mismatch-specific uracil DNA-glycosylase, UDG no no (DC)(DG)(DC)(DG)(DA)(DG)(DU)(DT)(DC)(DG)(DC)(DG) CGCGAGUTCGCG D polydeoxyribonucleotide no no MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample MUG 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21DE3 PLASMID pTRC99A 1 2.60 52.78 MICROBATCH 4.6 PEG4000, Sodium Acetate, pH 4.6, Microbatch, temperature 289K 289 PEG4000 1 Sodium Acetate 1 Sodium Acetate 2 -11.994 1 D 1 D 6 9.311 D_DC1:DG6_D 1 -14.608 1.199 0.902 -0.069 8.322 D 2 D 5 75.115 D_DG2:DA5_D 2 3.305 -1.344 -0.713 -3.590 -1.538 1 D 3 D 4 13.046 D_DC3:DG4_D 3 -30.451 0.004 0.399 0.408 1.538 1 D 4 D 3 13.046 D_DG4:DC3_D 4 -30.451 -0.004 0.399 0.408 -8.322 D 5 D 2 -75.115 D_DA5:DG2_D 5 -3.305 1.344 0.713 3.590 11.994 1 D 6 D 1 9.311 D_DG6:DC1_D 6 -14.608 -1.199 0.902 -0.069 -0.485 -179.255 D D 1 2 12.731 D D 6 5 -0.572 -25.459 -0.990 2.968 DD_DC1DG2:DA5DG6_DD 1 165.609 82.815 -173.121 -1.487 -0.511 -1.516 -177.462 D D 2 3 -57.381 D D 5 4 1.153 113.529 0.626 3.713 DD_DG2DC3:DG4DA5_DD 2 -136.270 -68.875 -31.141 -1.768 0.419 3.460 35.550 D D 3 4 20.866 D D 4 3 3.316 12.485 0.000 1.005 DD_DC3DG4:DC3DG4_DD 3 0.000 0.000 33.352 -0.305 0.000 3.200 79.633 D D 4 5 0.552 D D 3 2 3.253 0.707 1.516 -1.619 DD_DG4DA5:DG2DC3_DD 4 -2.538 1.982 79.597 -1.283 -1.251 1.451 -21.429 D D 5 6 -35.599 D D 2 1 2.784 12.423 -0.485 1.461 DD_DA5DG6:DC1DG2_DD 5 0.747 2.140 -17.480 -7.535 -1.087 pdbx_unobs_or_zero_occ_residues software chem_comp_atom chem_comp_bond database_2 pdbx_unobs_or_zero_occ_residues pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Advisory Refinement description Advisory Data collection Database references Refinement description 1 0 2002-10-11 1 1 2008-04-28 1 2 2011-07-13 1 3 2017-10-11 1 4 2024-02-14 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession Native MUG DNA glycosylase Structure BIOMOLECULE THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). The second strand of the DNA molecule is generated by applying symmetry operator 7_555 : y, x, -z, to DU and bases 8-12, and applying symmetry operator 7_554 : y, x, -1-z, to bases 1-6. RCSB Y RCSB 2002-09-30 REL HOH water Native MuG Other experimental model HOH 9 3 HOH HOH 13 D HOH 12 3 HOH HOH 14 D HOH 24 3 HOH HOH 15 D HOH 26 3 HOH HOH 16 D HOH 30 3 HOH HOH 17 D HOH 35 3 HOH HOH 18 D HOH 37 3 HOH HOH 19 D HOH 51 3 HOH HOH 20 D HOH 58 3 HOH HOH 21 D HOH 1 3 HOH HOH 169 A HOH 2 3 HOH HOH 170 A HOH 3 3 HOH HOH 171 A HOH 4 3 HOH HOH 172 A HOH 5 3 HOH HOH 173 A HOH 6 3 HOH HOH 174 A HOH 7 3 HOH HOH 175 A HOH 8 3 HOH HOH 176 A HOH 10 3 HOH HOH 177 A HOH 11 3 HOH HOH 178 A HOH 13 3 HOH HOH 179 A HOH 14 3 HOH HOH 180 A HOH 15 3 HOH HOH 181 A HOH 16 3 HOH HOH 182 A HOH 17 3 HOH HOH 183 A HOH 18 3 HOH HOH 184 A HOH 19 3 HOH HOH 185 A HOH 20 3 HOH HOH 186 A HOH 21 3 HOH HOH 187 A HOH 22 3 HOH HOH 188 A HOH 23 3 HOH HOH 189 A HOH 25 3 HOH HOH 190 A HOH 27 3 HOH HOH 191 A HOH 28 3 HOH HOH 192 A HOH 29 3 HOH HOH 193 A HOH 31 3 HOH HOH 194 A HOH 32 3 HOH HOH 195 A HOH 33 3 HOH HOH 196 A HOH 34 3 HOH HOH 197 A HOH 36 3 HOH HOH 198 A HOH 38 3 HOH HOH 199 A HOH 39 3 HOH HOH 200 A HOH 40 3 HOH HOH 201 A HOH 41 3 HOH HOH 202 A HOH 42 3 HOH HOH 203 A HOH 43 3 HOH HOH 204 A HOH 44 3 HOH HOH 205 A HOH 45 3 HOH HOH 206 A HOH 46 3 HOH HOH 207 A HOH 47 3 HOH HOH 208 A HOH 48 3 HOH HOH 209 A HOH 49 3 HOH HOH 210 A HOH 50 3 HOH HOH 211 A HOH 52 3 HOH HOH 212 A HOH 53 3 HOH HOH 213 A HOH 54 3 HOH HOH 214 A HOH 55 3 HOH HOH 215 A HOH 56 3 HOH HOH 216 A HOH 57 3 HOH HOH 217 A CYT 1 n 1 DC 1 D GUA 2 n 2 DG 2 D CYT 3 n 3 DC 3 D GUA 4 n 4 DG 4 D ADE 5 n 5 DA 5 D GUA 6 n 6 DG 6 D URI 7 n 7 DU 7 D THY 8 n 8 DT 8 D CYT 9 n 9 DC 9 D GUA 10 n 10 DG 10 D CYT 11 n 11 DC 11 D GUA 12 n 12 DG 12 D MET 1 n 1 MET 1 A VAL 2 n 2 VAL 2 A GLU 3 n 3 GLU 3 A ASP 4 n 4 ASP 4 A ILE 5 n 5 ILE 5 A LEU 6 n 6 LEU 6 A ALA 7 n 7 ALA 7 A PRO 8 n 8 PRO 8 A GLY 9 n 9 GLY 9 A LEU 10 n 10 LEU 10 A ARG 11 n 11 ARG 11 A VAL 12 n 12 VAL 12 A VAL 13 n 13 VAL 13 A PHE 14 n 14 PHE 14 A CYS 15 n 15 CYS 15 A GLY 16 n 16 GLY 16 A ILE 17 n 17 ILE 17 A ASN 18 n 18 ASN 18 A PRO 19 n 19 PRO 19 A GLY 20 n 20 GLY 20 A LEU 21 n 21 LEU 21 A SER 22 n 22 SER 22 A SER 23 n 23 SER 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A PHE 28 n 28 PHE 28 A PRO 29 n 29 PRO 29 A PHE 30 n 30 PHE 30 A ALA 31 n 31 ALA 31 A HIS 32 n 32 HIS 32 A PRO 33 n 33 PRO 33 A ALA 34 n 34 ALA 34 A ASN 35 n 35 ASN 35 A ARG 36 n 36 ARG 36 A PHE 37 n 37 PHE 37 A TRP 38 n 38 TRP 38 A LYS 39 n 39 LYS 39 A VAL 40 n 40 VAL 40 A ILE 41 n 41 ILE 41 A TYR 42 n 42 TYR 42 A GLN 43 n 43 GLN 43 A ALA 44 n 44 ALA 44 A GLY 45 n 45 GLY 45 A PHE 46 n 46 PHE 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A ARG 49 n 49 ARG 49 A GLN 50 n 50 GLN 50 A LEU 51 n 51 LEU 51 A LYS 52 n 52 LYS 52 A PRO 53 n 53 PRO 53 A GLN 54 n 54 GLN 54 A GLU 55 n 55 GLU 55 A ALA 56 n 56 ALA 56 A GLN 57 n 57 GLN 57 A HIS 58 n 58 HIS 58 A LEU 59 n 59 LEU 59 A LEU 60 n 60 LEU 60 A ASP 61 n 61 ASP 61 A TYR 62 n 62 TYR 62 A ARG 63 n 63 ARG 63 A CYS 64 n 64 CYS 64 A GLY 65 n 65 GLY 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A ASP 71 n 71 ASP 71 A ARG 72 n 72 ARG 72 A PRO 73 n 73 PRO 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A GLN 76 n 76 GLN 76 A ALA 77 n 77 ALA 77 A ASN 78 n 78 ASN 78 A GLU 79 n 79 GLU 79 A VAL 80 n 80 VAL 80 A SER 81 n 81 SER 81 A LYS 82 n 82 LYS 82 A GLN 83 n 83 GLN 83 A GLU 84 n 84 GLU 84 A LEU 85 n 85 LEU 85 A HIS 86 n 86 HIS 86 A ALA 87 n 87 ALA 87 A GLY 88 n 88 GLY 88 A GLY 89 n 89 GLY 89 A ARG 90 n 90 ARG 90 A LYS 91 n 91 LYS 91 A LEU 92 n 92 LEU 92 A ILE 93 n 93 ILE 93 A GLU 94 n 94 GLU 94 A LYS 95 n 95 LYS 95 A ILE 96 n 96 ILE 96 A GLU 97 n 97 GLU 97 A ASP 98 n 98 ASP 98 A TYR 99 n 99 TYR 99 A GLN 100 n 100 GLN 100 A PRO 101 n 101 PRO 101 A GLN 102 n 102 GLN 102 A ALA 103 n 103 ALA 103 A LEU 104 n 104 LEU 104 A ALA 105 n 105 ALA 105 A ILE 106 n 106 ILE 106 A LEU 107 n 107 LEU 107 A GLY 108 n 108 GLY 108 A LYS 109 n 109 LYS 109 A GLN 110 n 110 GLN 110 A ALA 111 n 111 ALA 111 A TYR 112 n 112 TYR 112 A GLU 113 n 113 GLU 113 A GLN 114 n 114 GLN 114 A GLY 115 n 115 GLY 115 A PHE 116 n 116 PHE 116 A SER 117 n 117 SER 117 A GLN 118 n 118 GLN 118 A ARG 119 n 119 ARG 119 A GLY 120 n 120 GLY 120 A ALA 121 n 121 ALA 121 A GLN 122 n 122 GLN 122 A TRP 123 n 123 TRP 123 A GLY 124 n 124 GLY 124 A LYS 125 n 125 LYS 125 A GLN 126 n 126 GLN 126 A THR 127 n 127 THR 127 A LEU 128 n 128 LEU 128 A THR 129 n 129 THR 129 A ILE 130 n 130 ILE 130 A GLY 131 n 131 GLY 131 A SER 132 n 132 SER 132 A THR 133 n 133 THR 133 A GLN 134 n 134 GLN 134 A ILE 135 n 135 ILE 135 A TRP 136 n 136 TRP 136 A VAL 137 n 137 VAL 137 A LEU 138 n 138 LEU 138 A PRO 139 n 139 PRO 139 A ASN 140 n 140 ASN 140 A PRO 141 n 141 PRO 141 A SER 142 n 142 SER 142 A GLY 143 n 143 GLY 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A ARG 146 n 146 ARG 146 A VAL 147 n 147 VAL 147 A SER 148 n 148 SER 148 A LEU 149 n 149 LEU 149 A GLU 150 n 150 GLU 150 A LYS 151 n 151 LYS 151 A LEU 152 n 152 LEU 152 A VAL 153 n 153 VAL 153 A GLU 154 n 154 GLU 154 A ALA 155 n 155 ALA 155 A TYR 156 n 156 TYR 156 A ARG 157 n 157 ARG 157 A GLU 158 n 158 GLU 158 A LEU 159 n 159 LEU 159 A ASP 160 n 160 ASP 160 A GLN 161 n 161 GLN 161 A ALA 162 n 162 ALA 162 A LEU 163 n 163 LEU 163 A VAL 164 n 164 VAL 164 A VAL 165 n 165 VAL 165 A n 166 166 A n 167 167 A n 168 168 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 65 B O GLY 65 A N PHE 14 B N PHE 14 A N VAL 13 B N VAL 13 A O ALA 105 B O ALA 105 A N LEU 104 B N LEU 104 A O GLN 134 B O GLN 134 A O VAL 137 B O VAL 137 A N GLY 124 B N GLY 124 1 A CG MET 1 B CG MET 1 1 Y 1 A SD MET 1 B SD MET 1 1 Y 1 A CE MET 1 B CE MET 1 1 Y 1 A CG ARG 119 B CG ARG 119 1 Y 1 A CD ARG 119 B CD ARG 119 1 Y 1 A NE ARG 119 B NE ARG 119 1 Y 1 A CZ ARG 119 B CZ ARG 119 1 Y 1 A NH1 ARG 119 B NH1 ARG 119 1 Y 1 A NH2 ARG 119 B NH2 ARG 119 1 Y 1 A CG GLU 150 B CG GLU 150 1 Y 1 A CD GLU 150 B CD GLU 150 1 Y 1 A OE1 GLU 150 B OE1 GLU 150 1 Y 1 A OE2 GLU 150 B OE2 GLU 150 1 Y 1 A CG LYS 151 B CG LYS 151 1 Y 1 A CD LYS 151 B CD LYS 151 1 Y 1 A CE LYS 151 B CE LYS 151 1 Y 1 A NZ LYS 151 B NZ LYS 151 1 Y 1 A ARG 166 B ARG 166 1 Y 1 A GLY 167 B GLY 167 1 Y 1 A ARG 168 B ARG 168 1 Y 1 A HOH 210 D HOH 0 N 1 A HOH 211 D HOH 0 N 1 1.82 0.30 108.30 110.12 D D D O4' C1' N1 DC DC DC 1 1 1 N 1 2.62 0.30 108.30 110.92 D D D O4' C1' N9 DG DG DG 2 2 2 N 1 2.52 0.30 108.30 110.82 D D D O4' C1' N1 DC DC DC 3 3 3 N 1 2.31 0.30 108.30 110.61 D D D O4' C1' N9 DG DG DG 4 4 4 N 1 2.38 0.30 108.30 110.68 D D D O4' C1' N9 DA DA DA 5 5 5 N 1 2.69 0.30 108.30 110.99 D D D O4' C1' N9 DG DG DG 6 6 6 N 1 2.83 0.30 108.30 111.13 D D D O4' C1' N1 DU DU DU 7 7 7 N 1 3.32 0.30 108.30 111.62 D D D O4' C1' N1 DT DT DT 8 8 8 N 1 -3.65 0.60 122.90 119.25 D D D C6 C5 C7 DT DT DT 8 8 8 N 1 2.38 0.30 108.30 110.68 D D D O4' C1' N9 DG DG DG 12 12 12 N 1 D D C5 C7 DT DT 8 8 0.040 0.006 1.496 1.536 N 1 A ILE 17 -63.42 -73.68 1 A PRO 141 -69.17 5.34 PROTEIN_REP.PARAM TOPHCSDX.PRO WATER.PAR WATER.TOP DNA2.PAR DNA2.TOP 22.3 NO ELECTRON DENSITY IS OBSERVED FOR RESDUES 166 TO 168 RESIDUES A1, A109, A150 AND A151 WERE REFINED AS ALANINE 0.2520000 0.017 0.1900000 0.2300000 0.2300000 2.85 14.97 237 5478 5254 4.5 94.5 RANDOM 1104323.12 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT Native MuG Engh & Huber 0.35 5.00 0.38 2.85 14.97 58 1576 0 243 1275 0.010 1.5 24.0 1.17 2.47 1.50 3.91 2.00 4.01 2.00 5.67 2.50 0.3670000 0.018 0.2950000 2.93 18 452 8 4.00 85.2 38.2 2.85 20.0 1MWJ 5478 5478 0.0 2.0 0.0870000 0.0870000 1 9.7 2.3 94.5 0.2630000 2.85 2.95 2.0 472 0.2630000 1.8 85.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement X-PLOR Crystal Structure of a MUG-DNA pseudo substrate complex 1 N N 2 N N 3 N N 3 N N A GLY 20 B GLY 20 HELX_P A GLY 27 B GLY 27 1 1 8 A ARG 36 B ARG 36 HELX_P A GLY 45 B GLY 45 1 2 10 A LYS 52 B LYS 52 HELX_P A TYR 62 B TYR 62 5 3 11 A GLN 76 B GLN 76 HELX_P A VAL 80 B VAL 80 5 4 5 A SER 81 B SER 81 HELX_P A GLN 100 B GLN 100 1 5 20 A GLY 108 B GLY 108 HELX_P A SER 117 B SER 117 1 6 10 A SER 148 B SER 148 HELX_P A LEU 163 B LEU 163 1 7 16 hydrog DC-DG PAIR D DC 1 A O2 DC 1 1_555 D DG 6 A N1 DG 6 7_554 hydrog DG-DA MISPAIR D DG 2 A O6 DG 2 1_555 D DA 5 A N6 DA 5 7_554 hydrog DC-DG PAIR D DC 3 A O2 DC 3 1_555 D DG 4 A N2 DG 4 7_554 hydrog DG-DC PAIR D DG 4 A N1 DG 4 1_555 D DC 3 A N3 DC 3 7_554 hydrog DA-DG MISPAIR D DA 5 A N6 DA 5 1_555 D DG 2 A O6 DG 2 7_554 hydrog DG-DC PAIR D DG 6 A N1 DG 6 1_555 D DC 1 A O2 DC 1 7_554 HYDROLASE/DNA Rossmann Fold, non-hydrolysable DNA-complex, Uracil recognition., HYDROLASE-DNA COMPLEX MUG_ECOLI UNP 2 1 P0A9H1 MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEV SKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR 1MWJ PDB 1 1MWJ 1 168 1MWJ 1 168 P0A9H1 A 1 1 168 1 12 1MWJ 1 12 1MWJ D 2 1 12 5 parallel parallel parallel anti-parallel A CYS 64 B CYS 64 A LYS 68 B LYS 68 A VAL 12 B VAL 12 A GLY 16 B GLY 16 A ALA 103 B ALA 103 A LEU 107 B LEU 107 A THR 133 B THR 133 A LEU 138 B LEU 138 A GLY 124 B GLY 124 A ILE 130 B ILE 130 94 P 42 21 2