1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kim, H.-Y.H. Wilkinson, A.S. Harris, C.M. Harris, T.M. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C18 H16 O3 280.318 1S,2R,3S,4R-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 42 2328 2338 10.1021/bi020462k 12600200 Minor Groove Orientation for the (1S,2R,3S,4R)-N2-[1-(1,2,3,4-tetrahydro-2,3,4-trihydroxy-benz[a]anthracenyl)]-2'-deoxyguanosyl Adduct in the N-ras Codon 12 sequence 2003 10.2210/pdb1mxj/pdb pdb_00001mxj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 3470.257 5'-D(*GP*GP*CP*AP*GP*GP*TP*GP*GP*TP*G)-3' 1 syn polymer 3239.127 5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3' 1 syn polymer 280.318 1S,2R,3S,4R-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL 1 syn non-polymer no no (DG)(DG)(DC)(DA)(DG)(DG)(DT)(DG)(DG)(DT)(DG) GGCAGGTGGTG A polydeoxyribonucleotide no no (DC)(DA)(DC)(DC)(DA)(DC)(DC)(DT)(DG)(DC)(DC) CACCACCTGCC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -8.176 1 19 A 1 B 22 0.331 A_DG1:DC22_B 1 -5.369 -0.261 -0.391 -0.218 -7.116 1 19 A 2 B 21 -6.197 A_DG2:DC21_B 2 1.003 -0.043 -0.092 -0.083 -7.104 1 19 A 3 B 20 1.902 A_DC3:DG20_B 3 -4.964 -0.281 0.072 -0.063 -0.444 1 20 A 4 B 19 0.380 A_DA4:DT19_B 4 -8.065 0.169 0.154 -0.063 -1.005 1 19 A 5 B 18 -2.280 A_DG5:DC18_B 5 -0.857 -0.716 0.023 -0.353 5.965 1 19 A 6 B 17 3.103 A_DG6:DC17_B 6 0.081 -0.781 0.218 -0.208 -3.104 1 20 A 7 B 16 2.311 A_DT7:DA16_B 7 -8.023 -0.199 0.208 -0.112 8.908 1 19 A 8 B 15 -3.540 A_DG8:DC15_B 8 -5.758 -0.684 0.253 -0.301 2.775 1 19 A 9 B 14 -2.787 A_DG9:DC14_B 9 -9.204 -0.604 -0.077 -0.297 14.633 1 20 A 10 B 13 -5.772 A_DT10:DA13_B 10 -19.080 -0.289 -0.410 -0.039 13.027 1 19 A 11 B 12 2.196 A_DG11:DC12_B 11 2.409 -0.940 0.253 -0.277 3.418 36.669 A A 1 2 -16.078 B B 22 21 3.247 -9.995 -0.043 -1.083 AA_DG1DG2:DC21DC22_BB 1 0.141 -0.227 35.325 -0.298 0.088 2.606 36.622 A A 2 3 20.447 B B 21 20 2.926 12.598 0.461 -0.390 AA_DG2DC3:DG20DC21_BB 2 -1.587 2.575 34.421 -2.132 -0.924 2.913 37.230 A A 3 4 6.914 B B 20 19 2.982 4.397 -0.374 -0.631 AA_DC3DA4:DT19DG20_BB 3 -3.863 6.074 36.783 -1.517 0.121 3.449 32.593 A A 4 5 -6.823 B B 19 18 3.385 -3.821 -0.252 -0.787 AA_DA4DG5:DC18DT19_BB 4 0.537 -0.958 32.370 -0.706 0.546 2.731 36.322 A A 5 6 9.311 B B 18 17 2.927 5.779 0.768 -0.774 AA_DG5DG6:DC17DC18_BB 5 -1.863 3.001 35.828 -1.944 -1.459 3.544 35.044 A A 6 7 9.885 B B 17 16 3.785 5.923 -0.034 -1.134 AA_DG6DT7:DA16DC17_BB 6 1.510 -2.520 34.523 -2.888 0.313 2.888 37.272 A A 7 8 -9.699 B B 16 15 2.774 -6.172 -0.326 -0.922 AA_DT7DG8:DC15DA16_BB 7 -0.290 0.455 36.775 -0.729 0.476 3.046 35.269 A A 8 9 13.833 B B 15 14 3.355 8.287 -0.138 -0.783 AA_DG8DG9:DC14DC15_BB 8 4.362 -7.281 34.041 -2.518 0.873 2.443 34.163 A A 9 10 14.523 B B 14 13 2.633 8.448 -0.034 -0.466 AA_DG9DT10:DA13DC14_BB 9 0.231 -0.397 33.132 -1.847 0.088 2.964 33.923 A A 10 11 9.873 B B 13 12 3.183 5.695 0.024 -0.639 AA_DT10DG11:DC12DA13_BB 10 -7.044 12.212 32.726 -1.971 -1.124 database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2003-03-11 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2002-10-02 REL BZR 1S,2R,3S,4R-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL 1 DQF-COSY 7.0 ambient 298 K distance geometry, simulated annealing, molecular dynamics, matrix relaxation, torsion angle dynamics minimized average structure 1.7 mM DNA, 10 mM sodium phosphate buffer, pH=7.0 99.99% D2O 90 % H2O, 10% D2O 600 Bruker AMX BZR 26 3 BZR BZR 26 A G 1 n 1 DG 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A A 4 n 4 DA 4 A G 5 n 5 DG 5 A G 6 n 6 DG 6 A T 7 n 7 DT 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A T 10 n 10 DT 10 A G 11 n 11 DG 11 A C 12 n 1 DC 12 B A 13 n 2 DA 13 B C 14 n 3 DC 14 B C 15 n 4 DC 15 B A 16 n 5 DA 16 B C 17 n 6 DC 17 B C 18 n 7 DC 18 B T 19 n 8 DT 19 B G 20 n 9 DG 20 B C 21 n 10 DC 21 B C 22 n 11 DC 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O4' H3 DT BZR 7 26 1.31 1 A A N2 C9C DG BZR 6 26 2.13 1 3.36 0.30 108.30 111.66 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.45 0.50 113.10 117.55 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 -2.43 0.40 106.40 103.97 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 2.51 0.30 108.30 110.81 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.57 0.50 113.10 117.67 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.69 0.40 106.40 103.71 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 2.44 0.30 108.30 110.74 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 2.48 0.30 108.30 110.78 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.75 0.50 113.80 117.55 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 2.63 0.30 108.30 110.93 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 4.52 0.50 113.10 117.62 A A A N7 C8 N9 DG DG DG 5 5 5 N 1 -2.65 0.40 106.40 103.75 A A A C8 N9 C4 DG DG DG 5 5 5 N 1 3.47 0.30 108.30 111.77 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 4.57 0.50 113.10 117.67 A A A N7 C8 N9 DG DG DG 6 6 6 N 1 -2.63 0.40 106.40 103.77 A A A C8 N9 C4 DG DG DG 6 6 6 N 1 2.67 0.30 108.30 110.97 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 2.57 0.30 108.30 110.87 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 4.67 0.50 113.10 117.77 A A A N7 C8 N9 DG DG DG 8 8 8 N 1 -2.44 0.40 106.40 103.96 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 3.02 0.30 108.30 111.32 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 4.62 0.50 113.10 117.72 A A A N7 C8 N9 DG DG DG 9 9 9 N 1 -2.43 0.40 106.40 103.97 A A A C8 N9 C4 DG DG DG 9 9 9 N 1 3.05 0.30 108.30 111.35 A A A O4' C1' N1 DT DT DT 10 10 10 N 1 3.25 0.30 108.30 111.55 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 4.54 0.50 113.10 117.64 A A A N7 C8 N9 DG DG DG 11 11 11 N 1 -2.72 0.40 106.40 103.68 A A A C8 N9 C4 DG DG DG 11 11 11 N 1 2.83 0.30 108.30 111.13 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 2.41 0.30 108.30 110.71 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 3.75 0.50 113.80 117.55 B B B N7 C8 N9 DA DA DA 13 13 13 N 1 4.41 0.30 108.30 112.71 B B B O4' C1' N1 DC DC DC 14 14 14 N 1 3.09 0.30 108.30 111.39 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 2.49 0.30 108.30 110.79 B B B O4' C1' N9 DA DA DA 16 16 16 N 1 3.73 0.50 113.80 117.53 B B B N7 C8 N9 DA DA DA 16 16 16 N 1 2.33 0.30 108.30 110.63 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 2.62 0.30 108.30 110.92 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 2.38 0.30 108.30 110.68 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 3.86 0.30 108.30 112.16 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 4.69 0.50 113.10 117.79 B B B N7 C8 N9 DG DG DG 20 20 20 N 1 2.82 0.30 108.30 111.12 B B B O4' C1' N1 DC DC DC 22 22 22 N minimized average NMR solution structure of benz[a]anthracene-dG in ras codon 12,2; GGCAGXTGGTG 1 N N 2 N N 3 N N covale 1.315 none A DG 6 A N2 DG 6 1_555 A BZR 26 C C4C BZR 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 22 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 22 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 22 B N4 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 18 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 18 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 18 B N4 DC 7 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 17 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 17 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 17 B N4 DC 6 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 16 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 16 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 14 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 14 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 14 B N4 DC 3 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 13 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 13 B N6 DA 2 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 12 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 12 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 12 B N4 DC 1 1_555 DNA DNA adduct, B-like DNA, DNA 1MXJ PDB 1 1MXJ 1MXJ PDB 2 1MXJ 1 11 1MXJ 1 11 1MXJ A 1 1 11 12 22 1MXJ 12 22 1MXJ B 2 1 11 BINDING SITE FOR RESIDUE BZR A 26 A BZR 26 Software 7 A DG 5 A DG 5 7 1_555 A DG 6 A DG 6 7 1_555 A DT 7 A DT 7 7 1_555 A DG 8 A DG 8 7 1_555 B DC 17 B DC 6 7 1_555 B DC 18 B DC 7 7 1_555 B DT 19 B DT 8 7 1_555 1 P 1