0.009681
0.000000
0.000000
0.000000
0.009681
0.000000
0.000000
0.000000
0.009681
0.00000
0.00000
0.00000
Watanabe, L.
Bell, B.J.
Lebioda, L.
Rios-Steiner, J.L.
Tulinsky, A.
Arni, R.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
90.00
103.300
103.300
103.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
1454
1458
10.1107/S0907444903013192
12876349
Structure of 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase from Pseudomonas putida.
2003
UK
Structure
STRUE6
2005
0969-2126
9
1
9
10.1016/S0969-2126(00)00555-4
Directed evolution of a new catalytic site in 2-keto-3-deoxy-6-phosphogluconate aldolase from Escherichia coli.
2001
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
3679
3684
10.1073/pnas.071380898
Covalent intermediate trapped in 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase structure at 1.95-A resolution
2001
US
Biochemistry
BICHAW
0033
0006-2960
15
4410
4417
The folding and quaternary structure of trimeric 2-keto-3-deoxy-6-phosphogluconic aldolase at 3.5-A resolution.
1976
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
162
419
444
Structure of 2-keto-3-deoxy-6-phosphogluconate aldolase at 2.8A resolution
1982
10.2210/pdb1mxs/pdb
pdb_00001mxs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
296
1
Yale/MSC mirrors
IMAGE PLATE
RIGAKU RAXIS II
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
24003.762
KDPG Aldolase
4.1.2.14
1
nat
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
56
nat
water
2-dehydro-3-deoxyphosphogluconate aldolase
no
no
TTLERPQPKLSMADKAARIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCV
GAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAF
GGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSAEAIALLDAN
TTLERPQPKLSMADKAARIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCV
GAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAF
GGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSAEAIALLDAN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pseudomonas
sample
303
Pseudomonas putida
1
3.82
67.84
MICRODIALYSIS
3.5
ammonium sulfate, KH2PO4, pH 3.5, MICRODIALYSIS, temperature 296K
296
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-09-16
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2002-10-03
REL
REL
SO4
SULFATE ION
HOH
water
1EUN
PDB
experimental model
SO4
299
2
SO4
SO4
299
A
SO4
300
2
SO4
SO4
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
n
1
2
A
n
2
3
A
n
3
4
A
n
4
5
A
n
5
6
A
n
6
7
A
n
7
8
A
n
8
9
A
n
9
10
A
LEU
11
n
10
LEU
11
A
SER
12
n
11
SER
12
A
MET
13
n
12
MET
13
A
ALA
14
n
13
ALA
14
A
ASP
15
n
14
ASP
15
A
LYS
16
n
15
LYS
16
A
ALA
17
n
16
ALA
17
A
ALA
18
n
17
ALA
18
A
ARG
19
n
18
ARG
19
A
ILE
20
n
19
ILE
20
A
ASP
21
n
20
ASP
21
A
ALA
22
n
21
ALA
22
A
ILE
23
n
22
ILE
23
A
CYS
24
n
23
CYS
24
A
GLU
25
n
24
GLU
25
A
LYS
26
n
25
LYS
26
A
ALA
27
n
26
ALA
27
A
ARG
28
n
27
ARG
28
A
ILE
29
n
28
ILE
29
A
LEU
30
n
29
LEU
30
A
PRO
31
n
30
PRO
31
A
VAL
32
n
31
VAL
32
A
ILE
33
n
32
ILE
33
A
THR
34
n
33
THR
34
A
ILE
35
n
34
ILE
35
A
ALA
36
n
35
ALA
36
A
ARG
37
n
36
ARG
37
A
GLU
38
n
37
GLU
38
A
GLU
39
n
38
GLU
39
A
ASP
40
n
39
ASP
40
A
ILE
41
n
40
ILE
41
A
LEU
42
n
41
LEU
42
A
PRO
43
n
42
PRO
43
A
LEU
44
n
43
LEU
44
A
ALA
45
n
44
ALA
45
A
ASP
46
n
45
ASP
46
A
ALA
47
n
46
ALA
47
A
LEU
48
n
47
LEU
48
A
ALA
49
n
48
ALA
49
A
ALA
50
n
49
ALA
50
A
GLY
51
n
50
GLY
51
A
GLY
52
n
51
GLY
52
A
ILE
53
n
52
ILE
53
A
ARG
54
n
53
ARG
54
A
THR
55
n
54
THR
55
A
LEU
56
n
55
LEU
56
A
GLU
57
n
56
GLU
57
A
VAL
58
n
57
VAL
58
A
THR
59
n
58
THR
59
A
LEU
60
n
59
LEU
60
A
ARG
61
n
60
ARG
61
A
SER
62
n
61
SER
62
A
GLN
63
n
62
GLN
63
A
HIS
64
n
63
HIS
64
A
GLY
65
n
64
GLY
65
A
LEU
66
n
65
LEU
66
A
LYS
67
n
66
LYS
67
A
ALA
68
n
67
ALA
68
A
ILE
69
n
68
ILE
69
A
GLN
70
n
69
GLN
70
A
VAL
71
n
70
VAL
71
A
LEU
72
n
71
LEU
72
A
ARG
73
n
72
ARG
73
A
GLU
74
n
73
GLU
74
A
GLN
75
n
74
GLN
75
A
ARG
76
n
75
ARG
76
A
PRO
77
n
76
PRO
77
A
GLU
78
n
77
GLU
78
A
LEU
79
n
78
LEU
79
A
CYS
80
n
79
CYS
80
A
VAL
81
n
80
VAL
81
A
GLY
82
n
81
GLY
82
A
ALA
83
n
82
ALA
83
A
GLY
84
n
83
GLY
84
A
THR
85
n
84
THR
85
A
VAL
86
n
85
VAL
86
A
LEU
87
n
86
LEU
87
A
ASP
88
n
87
ASP
88
A
ARG
89
n
88
ARG
89
A
SER
90
n
89
SER
90
A
MET
91
n
90
MET
91
A
PHE
92
n
91
PHE
92
A
ALA
93
n
92
ALA
93
A
ALA
94
n
93
ALA
94
A
VAL
95
n
94
VAL
95
A
GLU
96
n
95
GLU
96
A
ALA
97
n
96
ALA
97
A
ALA
98
n
97
ALA
98
A
GLY
99
n
98
GLY
99
A
ALA
100
n
99
ALA
100
A
GLN
101
n
100
GLN
101
A
PHE
102
n
101
PHE
102
A
VAL
103
n
102
VAL
103
A
VAL
104
n
103
VAL
104
A
THR
105
n
104
THR
105
A
PRO
106
n
105
PRO
106
A
GLY
107
n
106
GLY
107
A
ILE
108
n
107
ILE
108
A
THR
109
n
108
THR
109
A
GLN
110
n
109
GLU
110
A
ASP
111
n
110
ASP
111
A
ILE
112
n
111
ILE
112
A
LEU
113
n
112
LEU
113
A
GLU
114
n
113
GLU
114
A
ALA
115
n
114
ALA
115
A
GLY
116
n
115
GLY
116
A
VAL
117
n
116
VAL
117
A
ASP
118
n
117
ASP
118
A
SER
119
n
118
SER
119
A
GLU
120
n
119
GLU
120
A
ILE
121
n
120
ILE
121
A
PRO
122
n
121
PRO
122
A
LEU
123
n
122
LEU
123
A
LEU
124
n
123
LEU
124
A
PRO
125
n
124
PRO
125
A
GLY
126
n
125
GLY
126
A
ILE
127
n
126
ILE
127
A
SER
128
n
127
SER
128
A
THR
129
n
128
THR
129
A
PRO
130
n
129
PRO
130
A
SER
131
n
130
SER
131
A
GLU
132
n
131
GLU
132
A
ILE
133
n
132
ILE
133
A
MET
134
n
133
MET
134
A
MET
135
n
134
MET
135
A
GLY
136
n
135
GLY
136
A
TYR
137
n
136
TYR
137
A
ALA
138
n
137
ALA
138
A
LEU
139
n
138
LEU
139
A
GLY
140
n
139
GLY
140
A
TYR
141
n
140
TYR
141
A
ARG
142
n
141
ARG
142
A
ARG
143
n
142
ARG
143
A
PHE
144
n
143
PHE
144
A
LYS
145
n
144
LYS
145
A
LEU
146
n
145
LEU
146
A
PHE
147
n
146
PHE
147
A
PRO
148
n
147
PRO
148
A
ALA
149
n
148
ALA
149
A
GLU
150
n
149
GLU
150
A
ILE
151
n
150
ILE
151
A
SER
152
n
151
SER
152
A
GLY
153
n
152
GLY
153
A
GLY
154
n
153
GLY
154
A
VAL
155
n
154
VAL
155
A
ALA
156
n
155
ALA
156
A
ALA
157
n
156
ALA
157
A
ILE
158
n
157
ILE
158
A
LYS
159
n
158
LYS
159
A
ALA
160
n
159
ALA
160
A
PHE
161
n
160
PHE
161
A
GLY
162
n
161
GLY
162
A
GLY
163
n
162
GLY
163
A
PRO
164
n
163
PRO
164
A
PHE
165
n
164
PHE
165
A
GLY
166
n
165
GLY
166
A
ASP
167
n
166
ASP
167
A
ILE
168
n
167
ILE
168
A
ARG
169
n
168
ARG
169
A
PHE
170
n
169
PHE
170
A
CYS
171
n
170
CYS
171
A
PRO
172
n
171
PRO
172
A
THR
173
n
172
THR
173
A
GLY
174
n
173
GLY
174
A
GLY
175
n
174
GLY
175
A
VAL
176
n
175
VAL
176
A
ASN
177
n
176
ASN
177
A
PRO
178
n
177
PRO
178
A
ALA
179
n
178
ALA
179
A
ASN
180
n
179
ASN
180
A
VAL
181
n
180
VAL
181
A
ARG
182
n
181
ARG
182
A
ASN
183
n
182
ASN
183
A
TYR
184
n
183
TYR
184
A
MET
185
n
184
MET
185
A
ALA
186
n
185
ALA
186
A
LEU
187
n
186
LEU
187
A
PRO
188
n
187
PRO
188
A
ASN
189
n
188
ASN
189
A
VAL
190
n
189
VAL
190
A
MET
191
n
190
MET
191
A
CYS
192
n
191
CYS
192
A
VAL
193
n
192
VAL
193
A
GLY
194
n
193
GLY
194
A
GLY
195
n
194
THR
195
A
THR
196
n
195
THR
196
A
TRP
197
n
196
TRP
197
A
MET
198
n
197
MET
198
A
LEU
199
n
198
LEU
199
A
ASP
200
n
199
ASP
200
A
SER
201
n
200
SER
201
A
SER
202
n
201
SER
202
A
TRP
203
n
202
TRP
203
A
ILE
204
n
203
ILE
204
A
LYS
205
n
204
LYS
205
A
ASN
206
n
205
ASN
206
A
GLY
207
n
206
GLY
207
A
ASP
208
n
207
ASP
208
A
TRP
209
n
208
TRP
209
A
ALA
210
n
209
ALA
210
A
ARG
211
n
210
ARG
211
A
ILE
212
n
211
ILE
212
A
GLU
213
n
212
GLU
213
A
ALA
214
n
213
ALA
214
A
CYS
215
n
214
CYS
215
A
SER
216
n
215
SER
216
A
ALA
217
n
216
ALA
217
A
GLU
218
n
217
GLU
218
A
ALA
219
n
218
ALA
219
A
ILE
220
n
219
ILE
220
A
ALA
221
n
220
ALA
221
A
LEU
222
n
221
LEU
222
A
LEU
223
n
222
LEU
223
A
ASP
224
n
223
ASP
224
A
ALA
225
n
224
ALA
225
A
ASN
226
n
225
ASN
226
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
5100
-144
23990
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_566
z+1/2,-x+3/2,-y+1
crystal symmetry operation
51.6500000000
154.9500000000
103.3000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
12_664
-y+3/2,-z+1,x-1/2
crystal symmetry operation
154.9500000000
103.3000000000
-51.6500000000
A
O
GLY
82
A
O
GLY
81
A
N
VAL
58
A
N
VAL
57
A
O
THR
59
A
O
THR
58
A
N
ILE
33
A
N
ILE
32
A
N
LEU
30
A
N
LEU
29
A
O
VAL
193
A
O
VAL
192
A
N
VAL
103
A
N
VAL
102
A
O
LEU
124
A
O
LEU
123
A
N
ILE
127
A
N
ILE
126
A
O
LYS
145
A
O
LYS
144
A
N
PHE
144
A
N
PHE
143
A
O
ARG
169
A
O
ARG
168
1
A
HOH
333
D
HOH
1
A
CB
THR
195
A
CB
THR
194
1
Y
1
A
OG1
THR
195
A
OG1
THR
194
1
Y
1
A
CG2
THR
195
A
CG2
THR
194
1
Y
1
A
THR
2
A
THR
1
1
Y
1
A
THR
3
A
THR
2
1
Y
1
A
LEU
4
A
LEU
3
1
Y
1
A
GLU
5
A
GLU
4
1
Y
1
A
ARG
6
A
ARG
5
1
Y
1
A
PRO
7
A
PRO
6
1
Y
1
A
GLN
8
A
GLN
7
1
Y
1
A
PRO
9
A
PRO
8
1
Y
1
A
LYS
10
A
LYS
9
1
Y
1
A
A
CD
OE2
GLU
GLU
110
110
0.079
0.011
1.252
1.331
N
1
A
A
NH2
NH2
ARG
ARG
211
211
1.91
1_555
8_656
1
A
ARG
28
73.76
-46.09
1
A
GLU
39
-58.28
1.27
1
A
ILE
41
-51.04
-71.20
1
A
HIS
64
-69.96
4.20
1
A
SER
128
-131.76
-31.15
1
A
PHE
165
-112.84
68.87
1
A
THR
195
175.49
-176.77
1
A
LEU
199
-114.33
50.94
1
A
ASN
206
-67.54
1.80
1
A
ASP
224
-170.66
81.40
1
A
ALA
225
173.43
-63.19
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
ION.TOP
WATER_REP.PARAM
WATER.TOP
34.9
0.00
0.00
0.00
0.00
0.00
0.00
0.214
0.009
0.171
0.171
2.20
9.98
525
9901
5.3
52.9
RANDOM
1
RESTRAINED
THROUGHOUT
3.0
MOLECULAR REPLACEMENT
1EUN
Engh & Huber
FLAT MODEL
30.9183
0.341747
0.32
0.25
5.00
0.62
0.41
2.20
9.98
56
1669
10
0
1603
0.006
1.2
22.4
0.89
0.329
0.059
0.3
50
31
488
6
6.0
16.8
12.6
2.2
9.98
1MXS
9901
0.046
1
2.2
50
9901
0.046
1
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.1
Crystal structure of 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase from Pseudomonas putida.
1
N
N
2
N
N
2
N
N
3
N
N
A
SER
12
A
SER
11
HELX_P
A
ARG
28
A
ARG
27
1
1
17
A
ARG
37
A
ARG
36
HELX_P
A
GLU
39
A
GLU
38
5
2
3
A
ASP
40
A
ASP
39
HELX_P
A
GLY
51
A
GLY
50
1
3
12
A
HIS
64
A
HIS
63
HELX_P
A
ARG
76
A
ARG
75
1
4
13
A
ASP
88
A
ASP
87
HELX_P
A
GLY
99
A
GLY
98
1
5
12
A
THR
109
A
THR
108
HELX_P
A
SER
119
A
SER
118
1
6
11
A
THR
129
A
THR
128
HELX_P
A
ALA
138
A
ALA
137
1
7
10
A
PRO
148
A
PRO
147
HELX_P
A
GLY
153
A
GLY
152
1
8
6
A
GLY
153
A
GLY
152
HELX_P
A
GLY
163
A
GLY
162
1
9
11
A
ASN
180
A
ASN
179
HELX_P
A
LEU
187
A
LEU
186
1
10
8
A
ASP
200
A
ASP
199
HELX_P
A
ASN
206
A
ASN
205
1
11
7
A
ASP
208
A
ASP
207
HELX_P
A
LEU
222
A
LEU
221
1
12
15
LYASE
2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE, SULFATE, BETA-BARREL, LYASE
A
PHE
147
A
PHE
146
1
A
PRO
148
A
PRO
147
-0.20
ALKD_PSEPU
UNP
1
1
P00885
TTLERPQPKLSMADKAARIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCV
GAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAF
GGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTGWMLDSSWIKNGDWARIEACSAEAIALLDAN
1
225
1MXS
2
226
P00885
A
1
1
225
1
GLY
SEE REMARK 999
THR
196
1MXS
A
P00885
UNP
195
195
4
2
3
parallel
parallel
parallel
parallel
parallel
parallel
A
CYS
80
A
CYS
79
A
GLY
84
A
GLY
83
A
THR
55
A
THR
54
A
THR
59
A
THR
58
A
ILE
29
A
ILE
28
A
ILE
33
A
ILE
32
A
VAL
193
A
VAL
192
A
THR
195
A
THR
194
A
VAL
103
A
VAL
102
A
VAL
104
A
VAL
103
A
LEU
123
A
LEU
122
A
LEU
124
A
LEU
123
A
GLY
126
A
GLY
125
A
ILE
127
A
ILE
126
A
ARG
143
A
ARG
142
A
LEU
146
A
LEU
145
A
ARG
169
A
ARG
168
A
PRO
172
A
PRO
171
BINDING SITE FOR RESIDUE SO4 A 299
A
SO4
299
Software
5
BINDING SITE FOR RESIDUE SO4 A 300
A
SO4
300
Software
8
A
GLY
174
A
GLY
173
5
1_555
A
GLY
175
A
GLY
174
5
1_555
A
THR
195
A
THR
194
5
1_555
A
THR
196
A
THR
195
5
1_555
A
HOH
305
D
HOH
5
1_555
A
GLU
57
A
GLU
56
8
1_555
A
ARG
61
A
ARG
60
8
1_555
A
GLY
84
A
GLY
83
8
1_555
A
THR
85
A
THR
84
8
1_555
A
VAL
104
A
VAL
103
8
1_555
A
THR
105
A
THR
104
8
1_555
A
PRO
106
A
PRO
105
8
1_555
A
LYS
145
A
LYS
144
8
1_555
198
P 21 3