0.017747
0.000000
0.000000
0.000000
0.013381
0.000000
0.000000
0.000000
0.009162
0.00000
0.00000
0.00000
Huxford, T.
Mishler, D.
Phelps, C.B.
Huang, D.-B.
Sengchanthalangsy, L.L.
Reeves, R.
Hughes, C.A.
Komives, E.A.
Ghosh, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
56.348
74.732
109.147
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
324
587
597
10.1016/S0022-2836(02)01149-X
12460563
Solvent exposed non-contacting amino acids play a critical role in NF-kappaB/I kappaB alpha complex formation
2002
10.2210/pdb1my5/pdb
pdb_00001my5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
Osmic optics
IMAGE PLATE
2001-10-22
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
13201.880
NF-kappaB p65 (RelA) subunit
residues 191-304 (dimerization domain)
2
man
polymer
18.015
water
168
nat
water
no
no
TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM
QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR
TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM
QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
RELA
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET11a
1
2.18
43.47
VAPOR DIFFUSION, HANGING DROP
7.5
0.1M sodium HEPES, 0.2M sodium tartrate, 2M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2002-12-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
NF-kappaB p65 subunit dimerization domain homodimer
NF-kappaB P65 subunit dimerization domain homodimer, N202R mutation
RCSB
Y
RCSB
2002-10-03
REL
HOH
water
1BFT
pdb id 1bft
PDB
experimental model
TIP
600
2
HOH
HOH
600
A
TIP
601
2
HOH
HOH
601
A
TIP
607
2
HOH
HOH
607
A
TIP
608
2
HOH
HOH
608
A
TIP
610
2
HOH
HOH
610
A
TIP
612
2
HOH
HOH
612
A
TIP
613
2
HOH
HOH
613
A
TIP
614
2
HOH
HOH
614
A
TIP
615
2
HOH
HOH
615
A
TIP
616
2
HOH
HOH
616
A
TIP
617
2
HOH
HOH
617
A
TIP
618
2
HOH
HOH
618
A
TIP
621
2
HOH
HOH
621
A
TIP
623
2
HOH
HOH
623
A
TIP
626
2
HOH
HOH
626
A
TIP
630
2
HOH
HOH
630
A
TIP
631
2
HOH
HOH
631
A
TIP
637
2
HOH
HOH
637
A
TIP
639
2
HOH
HOH
639
A
TIP
640
2
HOH
HOH
640
A
TIP
641
2
HOH
HOH
641
A
TIP
643
2
HOH
HOH
643
A
TIP
646
2
HOH
HOH
646
A
TIP
648
2
HOH
HOH
648
A
TIP
650
2
HOH
HOH
650
A
TIP
652
2
HOH
HOH
652
A
TIP
653
2
HOH
HOH
653
A
TIP
656
2
HOH
HOH
656
A
TIP
657
2
HOH
HOH
657
A
TIP
659
2
HOH
HOH
659
A
TIP
661
2
HOH
HOH
661
A
TIP
662
2
HOH
HOH
662
A
TIP
663
2
HOH
HOH
663
A
TIP
664
2
HOH
HOH
664
A
TIP
666
2
HOH
HOH
666
A
TIP
667
2
HOH
HOH
667
A
TIP
669
2
HOH
HOH
669
A
TIP
670
2
HOH
HOH
670
A
TIP
673
2
HOH
HOH
673
A
TIP
676
2
HOH
HOH
676
A
TIP
677
2
HOH
HOH
677
A
TIP
678
2
HOH
HOH
678
A
TIP
680
2
HOH
HOH
680
A
TIP
682
2
HOH
HOH
682
A
TIP
684
2
HOH
HOH
684
A
TIP
686
2
HOH
HOH
686
A
TIP
691
2
HOH
HOH
691
A
TIP
694
2
HOH
HOH
694
A
TIP
695
2
HOH
HOH
695
A
TIP
696
2
HOH
HOH
696
A
TIP
697
2
HOH
HOH
697
A
TIP
701
2
HOH
HOH
701
A
TIP
702
2
HOH
HOH
702
A
TIP
703
2
HOH
HOH
703
A
TIP
704
2
HOH
HOH
704
A
TIP
707
2
HOH
HOH
707
A
TIP
708
2
HOH
HOH
708
A
TIP
709
2
HOH
HOH
709
A
TIP
711
2
HOH
HOH
711
A
TIP
713
2
HOH
HOH
713
A
TIP
714
2
HOH
HOH
714
A
TIP
716
2
HOH
HOH
716
A
TIP
718
2
HOH
HOH
718
A
TIP
719
2
HOH
HOH
719
A
TIP
722
2
HOH
HOH
722
A
TIP
723
2
HOH
HOH
723
A
TIP
725
2
HOH
HOH
725
A
TIP
728
2
HOH
HOH
728
A
TIP
732
2
HOH
HOH
732
A
TIP
733
2
HOH
HOH
733
A
TIP
735
2
HOH
HOH
735
A
TIP
737
2
HOH
HOH
737
A
TIP
739
2
HOH
HOH
739
A
TIP
742
2
HOH
HOH
742
A
TIP
744
2
HOH
HOH
744
A
TIP
747
2
HOH
HOH
747
A
TIP
748
2
HOH
HOH
748
A
TIP
750
2
HOH
HOH
750
A
TIP
752
2
HOH
HOH
752
A
TIP
753
2
HOH
HOH
753
A
TIP
755
2
HOH
HOH
755
A
TIP
760
2
HOH
HOH
760
A
TIP
761
2
HOH
HOH
761
A
TIP
762
2
HOH
HOH
762
A
TIP
763
2
HOH
HOH
763
A
TIP
765
2
HOH
HOH
765
A
TIP
767
2
HOH
HOH
767
A
TIP
768
2
HOH
HOH
768
A
TIP
769
2
HOH
HOH
769
A
TIP
772
2
HOH
HOH
772
A
TIP
602
2
HOH
HOH
602
B
TIP
603
2
HOH
HOH
603
B
TIP
604
2
HOH
HOH
604
B
TIP
605
2
HOH
HOH
605
B
TIP
606
2
HOH
HOH
606
B
TIP
609
2
HOH
HOH
609
B
TIP
611
2
HOH
HOH
611
B
TIP
619
2
HOH
HOH
619
B
TIP
620
2
HOH
HOH
620
B
TIP
622
2
HOH
HOH
622
B
TIP
624
2
HOH
HOH
624
B
TIP
625
2
HOH
HOH
625
B
TIP
627
2
HOH
HOH
627
B
TIP
628
2
HOH
HOH
628
B
TIP
629
2
HOH
HOH
629
B
TIP
632
2
HOH
HOH
632
B
TIP
633
2
HOH
HOH
633
B
TIP
634
2
HOH
HOH
634
B
TIP
635
2
HOH
HOH
635
B
TIP
636
2
HOH
HOH
636
B
TIP
638
2
HOH
HOH
638
B
TIP
644
2
HOH
HOH
644
B
TIP
645
2
HOH
HOH
645
B
TIP
647
2
HOH
HOH
647
B
TIP
649
2
HOH
HOH
649
B
TIP
651
2
HOH
HOH
651
B
TIP
654
2
HOH
HOH
654
B
TIP
655
2
HOH
HOH
655
B
TIP
658
2
HOH
HOH
658
B
TIP
660
2
HOH
HOH
660
B
TIP
665
2
HOH
HOH
665
B
TIP
668
2
HOH
HOH
668
B
TIP
671
2
HOH
HOH
671
B
TIP
672
2
HOH
HOH
672
B
TIP
674
2
HOH
HOH
674
B
TIP
675
2
HOH
HOH
675
B
TIP
679
2
HOH
HOH
679
B
TIP
681
2
HOH
HOH
681
B
TIP
683
2
HOH
HOH
683
B
TIP
685
2
HOH
HOH
685
B
TIP
687
2
HOH
HOH
687
B
TIP
688
2
HOH
HOH
688
B
TIP
689
2
HOH
HOH
689
B
TIP
690
2
HOH
HOH
690
B
TIP
692
2
HOH
HOH
692
B
TIP
693
2
HOH
HOH
693
B
TIP
698
2
HOH
HOH
698
B
TIP
699
2
HOH
HOH
699
B
TIP
700
2
HOH
HOH
700
B
TIP
705
2
HOH
HOH
705
B
TIP
706
2
HOH
HOH
706
B
TIP
710
2
HOH
HOH
710
B
TIP
712
2
HOH
HOH
712
B
TIP
715
2
HOH
HOH
715
B
TIP
717
2
HOH
HOH
717
B
TIP
720
2
HOH
HOH
720
B
TIP
721
2
HOH
HOH
721
B
TIP
724
2
HOH
HOH
724
B
TIP
726
2
HOH
HOH
726
B
TIP
727
2
HOH
HOH
727
B
TIP
729
2
HOH
HOH
729
B
TIP
730
2
HOH
HOH
730
B
TIP
731
2
HOH
HOH
731
B
TIP
734
2
HOH
HOH
734
B
TIP
736
2
HOH
HOH
736
B
TIP
738
2
HOH
HOH
738
B
TIP
741
2
HOH
HOH
741
B
TIP
743
2
HOH
HOH
743
B
TIP
745
2
HOH
HOH
745
B
TIP
751
2
HOH
HOH
751
B
TIP
754
2
HOH
HOH
754
B
TIP
756
2
HOH
HOH
756
B
TIP
757
2
HOH
HOH
757
B
TIP
758
2
HOH
HOH
758
B
TIP
759
2
HOH
HOH
759
B
TIP
764
2
HOH
HOH
764
B
TIP
770
2
HOH
HOH
770
B
TIP
771
2
HOH
HOH
771
B
THR
191
n
1
THR
191
A
ALA
192
n
2
ALA
192
A
GLU
193
n
3
GLU
193
A
LEU
194
n
4
LEU
194
A
LYS
195
n
5
LYS
195
A
ILE
196
n
6
ILE
196
A
CYS
197
n
7
CYS
197
A
ARG
198
n
8
ARG
198
A
VAL
199
n
9
VAL
199
A
ASN
200
n
10
ASN
200
A
ARG
201
n
11
ARG
201
A
ASN
202
n
12
ASN
202
A
SER
203
n
13
SER
203
A
GLY
204
n
14
GLY
204
A
SER
205
n
15
SER
205
A
CYS
206
n
16
CYS
206
A
LEU
207
n
17
LEU
207
A
GLY
208
n
18
GLY
208
A
GLY
209
n
19
GLY
209
A
ASP
210
n
20
ASP
210
A
GLU
211
n
21
GLU
211
A
ILE
212
n
22
ILE
212
A
PHE
213
n
23
PHE
213
A
LEU
214
n
24
LEU
214
A
LEU
215
n
25
LEU
215
A
CYS
216
n
26
CYS
216
A
ASP
217
n
27
ASP
217
A
LYS
218
n
28
LYS
218
A
VAL
219
n
29
VAL
219
A
GLN
220
n
30
GLN
220
A
LYS
221
n
31
LYS
221
A
GLU
222
n
32
GLU
222
A
ASP
223
n
33
ASP
223
A
ILE
224
n
34
ILE
224
A
GLU
225
n
35
GLU
225
A
VAL
226
n
36
VAL
226
A
TYR
227
n
37
TYR
227
A
PHE
228
n
38
PHE
228
A
THR
229
n
39
THR
229
A
GLY
230
n
40
GLY
230
A
PRO
231
n
41
PRO
231
A
GLY
232
n
42
GLY
232
A
TRP
233
n
43
TRP
233
A
GLU
234
n
44
GLU
234
A
ALA
235
n
45
ALA
235
A
ARG
236
n
46
ARG
236
A
GLY
237
n
47
GLY
237
A
SER
238
n
48
SER
238
A
PHE
239
n
49
PHE
239
A
SER
240
n
50
SER
240
A
GLN
241
n
51
GLN
241
A
ALA
242
n
52
ALA
242
A
ASP
243
n
53
ASP
243
A
VAL
244
n
54
VAL
244
A
HIS
245
n
55
HIS
245
A
ARG
246
n
56
ARG
246
A
GLN
247
n
57
GLN
247
A
VAL
248
n
58
VAL
248
A
ALA
249
n
59
ALA
249
A
ILE
250
n
60
ILE
250
A
VAL
251
n
61
VAL
251
A
PHE
252
n
62
PHE
252
A
ARG
253
n
63
ARG
253
A
THR
254
n
64
THR
254
A
PRO
255
n
65
PRO
255
A
PRO
256
n
66
PRO
256
A
TYR
257
n
67
TYR
257
A
ALA
258
n
68
ALA
258
A
ASP
259
n
69
ASP
259
A
PRO
260
n
70
PRO
260
A
SER
261
n
71
SER
261
A
LEU
262
n
72
LEU
262
A
GLN
263
n
73
GLN
263
A
ALA
264
n
74
ALA
264
A
PRO
265
n
75
PRO
265
A
VAL
266
n
76
VAL
266
A
ARG
267
n
77
ARG
267
A
VAL
268
n
78
VAL
268
A
SER
269
n
79
SER
269
A
MET
270
n
80
MET
270
A
GLN
271
n
81
GLN
271
A
LEU
272
n
82
LEU
272
A
ARG
273
n
83
ARG
273
A
ARG
274
n
84
ARG
274
A
PRO
275
n
85
PRO
275
A
SER
276
n
86
SER
276
A
ASP
277
n
87
ASP
277
A
ARG
278
n
88
ARG
278
A
GLU
279
n
89
GLU
279
A
LEU
280
n
90
LEU
280
A
SER
281
n
91
SER
281
A
GLU
282
n
92
GLU
282
A
PRO
283
n
93
PRO
283
A
MET
284
n
94
MET
284
A
GLU
285
n
95
GLU
285
A
PHE
286
n
96
PHE
286
A
GLN
287
n
97
GLN
287
A
TYR
288
n
98
TYR
288
A
LEU
289
n
99
LEU
289
A
PRO
290
n
100
PRO
290
A
ASP
291
n
101
ASP
291
A
THR
292
n
102
THR
292
A
ASP
293
n
103
ASP
293
A
ALA
294
n
104
ASP
294
A
ARG
295
n
105
ARG
295
A
HIS
296
n
106
HIS
296
A
ARG
297
n
107
ARG
297
A
n
108
298
A
n
109
299
A
n
110
300
A
n
111
301
A
n
112
302
A
n
113
303
A
n
114
304
A
THR
191
n
1
THR
191
B
ALA
192
n
2
ALA
192
B
GLU
193
n
3
GLU
193
B
LEU
194
n
4
LEU
194
B
LYS
195
n
5
LYS
195
B
ILE
196
n
6
ILE
196
B
CYS
197
n
7
CYS
197
B
ARG
198
n
8
ARG
198
B
VAL
199
n
9
VAL
199
B
ASN
200
n
10
ASN
200
B
ARG
201
n
11
ARG
201
B
ASN
202
n
12
ASN
202
B
SER
203
n
13
SER
203
B
GLY
204
n
14
GLY
204
B
SER
205
n
15
SER
205
B
CYS
206
n
16
CYS
206
B
LEU
207
n
17
LEU
207
B
GLY
208
n
18
GLY
208
B
GLY
209
n
19
GLY
209
B
ASP
210
n
20
ASP
210
B
GLU
211
n
21
GLU
211
B
ILE
212
n
22
ILE
212
B
PHE
213
n
23
PHE
213
B
LEU
214
n
24
LEU
214
B
LEU
215
n
25
LEU
215
B
CYS
216
n
26
CYS
216
B
ASP
217
n
27
ASP
217
B
LYS
218
n
28
LYS
218
B
VAL
219
n
29
VAL
219
B
GLN
220
n
30
GLN
220
B
LYS
221
n
31
LYS
221
B
GLU
222
n
32
GLU
222
B
ASP
223
n
33
ASP
223
B
ILE
224
n
34
ILE
224
B
GLU
225
n
35
GLU
225
B
VAL
226
n
36
VAL
226
B
TYR
227
n
37
TYR
227
B
PHE
228
n
38
PHE
228
B
THR
229
n
39
THR
229
B
GLY
230
n
40
GLY
230
B
PRO
231
n
41
PRO
231
B
GLY
232
n
42
GLY
232
B
TRP
233
n
43
TRP
233
B
GLU
234
n
44
GLU
234
B
ALA
235
n
45
ALA
235
B
ARG
236
n
46
ARG
236
B
GLY
237
n
47
GLY
237
B
SER
238
n
48
SER
238
B
PHE
239
n
49
PHE
239
B
SER
240
n
50
SER
240
B
GLN
241
n
51
GLN
241
B
ALA
242
n
52
ALA
242
B
ASP
243
n
53
ASP
243
B
VAL
244
n
54
VAL
244
B
HIS
245
n
55
HIS
245
B
ARG
246
n
56
ARG
246
B
GLN
247
n
57
GLN
247
B
VAL
248
n
58
VAL
248
B
ALA
249
n
59
ALA
249
B
ILE
250
n
60
ILE
250
B
VAL
251
n
61
VAL
251
B
PHE
252
n
62
PHE
252
B
ARG
253
n
63
ARG
253
B
THR
254
n
64
THR
254
B
PRO
255
n
65
PRO
255
B
PRO
256
n
66
PRO
256
B
TYR
257
n
67
TYR
257
B
ALA
258
n
68
ALA
258
B
ASP
259
n
69
ASP
259
B
PRO
260
n
70
PRO
260
B
SER
261
n
71
SER
261
B
LEU
262
n
72
LEU
262
B
GLN
263
n
73
GLN
263
B
ALA
264
n
74
ALA
264
B
PRO
265
n
75
PRO
265
B
VAL
266
n
76
VAL
266
B
ARG
267
n
77
ARG
267
B
VAL
268
n
78
VAL
268
B
SER
269
n
79
SER
269
B
MET
270
n
80
MET
270
B
GLN
271
n
81
GLN
271
B
LEU
272
n
82
LEU
272
B
ARG
273
n
83
ARG
273
B
ARG
274
n
84
ARG
274
B
PRO
275
n
85
PRO
275
B
SER
276
n
86
SER
276
B
ASP
277
n
87
ASP
277
B
ARG
278
n
88
ARG
278
B
GLU
279
n
89
GLU
279
B
LEU
280
n
90
LEU
280
B
SER
281
n
91
SER
281
B
GLU
282
n
92
GLU
282
B
PRO
283
n
93
PRO
283
B
MET
284
n
94
MET
284
B
GLU
285
n
95
GLU
285
B
PHE
286
n
96
PHE
286
B
GLN
287
n
97
GLN
287
B
TYR
288
n
98
TYR
288
B
LEU
289
n
99
LEU
289
B
PRO
290
n
100
PRO
290
B
ASP
291
n
101
ASP
291
B
n
102
292
B
n
103
293
B
n
104
294
B
n
105
295
B
n
106
296
B
n
107
297
B
n
108
298
B
n
109
299
B
n
110
300
B
n
111
301
B
n
112
302
B
n
113
303
B
n
114
304
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
198
A
N
ARG
8
A
O
LEU
215
A
O
LEU
25
A
N
ILE
212
A
N
ILE
22
A
O
PHE
252
A
O
PHE
62
A
N
GLY
204
A
N
GLY
14
A
O
LEU
289
A
O
LEU
99
A
O
PHE
286
A
O
PHE
96
A
N
VAL
268
A
N
VAL
78
A
O
GLN
271
A
O
GLN
81
A
N
TYR
227
A
N
TYR
37
A
N
PHE
228
A
N
PHE
38
A
O
ALA
235
A
O
ALA
45
A
N
GLY
204
A
N
GLY
14
A
O
LEU
289
A
O
LEU
99
A
O
PHE
286
A
O
PHE
96
A
N
VAL
268
A
N
VAL
78
A
N
ARG
274
A
N
ARG
84
A
O
GLU
279
A
O
GLU
89
B
N
ARG
198
B
N
ARG
8
B
O
LEU
215
B
O
LEU
25
B
N
ILE
212
B
N
ILE
22
B
O
PHE
252
B
O
PHE
62
B
N
GLY
204
B
N
GLY
14
B
O
LEU
289
B
O
LEU
99
B
O
PHE
286
B
O
PHE
96
B
N
VAL
268
B
N
VAL
78
B
O
GLN
271
B
O
GLN
81
B
N
TYR
227
B
N
TYR
37
B
N
PHE
228
B
N
PHE
38
B
O
ALA
235
B
O
ALA
45
B
N
GLY
204
B
N
GLY
14
B
O
LEU
289
B
O
LEU
99
B
O
PHE
286
B
O
PHE
96
B
N
VAL
268
B
N
VAL
78
B
N
ARG
274
B
N
ARG
84
B
O
GLU
279
B
O
GLU
89
1
B
HOH
720
D
HOH
1
A
CG
ASP
294
A
CG
ASP
104
1
Y
1
A
OD1
ASP
294
A
OD1
ASP
104
1
Y
1
A
OD2
ASP
294
A
OD2
ASP
104
1
Y
1
A
ILE
298
A
ILE
108
1
Y
1
A
GLU
299
A
GLU
109
1
Y
1
A
GLU
300
A
GLU
110
1
Y
1
A
LYS
301
A
LYS
111
1
Y
1
A
ARG
302
A
ARG
112
1
Y
1
A
LYS
303
A
LYS
113
1
Y
1
A
ARG
304
A
ARG
114
1
Y
1
B
THR
292
B
THR
102
1
Y
1
B
ASP
293
B
ASP
103
1
Y
1
B
ASP
294
B
ASP
104
1
Y
1
B
ARG
295
B
ARG
105
1
Y
1
B
HIS
296
B
HIS
106
1
Y
1
B
ARG
297
B
ARG
107
1
Y
1
B
ILE
298
B
ILE
108
1
Y
1
B
GLU
299
B
GLU
109
1
Y
1
B
GLU
300
B
GLU
110
1
Y
1
B
LYS
301
B
LYS
111
1
Y
1
B
ARG
302
B
ARG
112
1
Y
1
B
LYS
303
B
LYS
113
1
Y
1
B
ARG
304
B
ARG
114
1
Y
1
B
B
NH2
O
ARG
HOH
201
603
0.36
1
B
B
CZ
O
ARG
HOH
201
603
1.01
1
B
B
NE
O
ARG
HOH
201
603
2.00
1
B
B
NH1
O
ARG
HOH
201
603
2.05
1
A
ALA
192
-144.30
-56.27
1
A
GLU
193
-139.35
-31.31
1
A
GLN
247
63.47
-3.18
1
B
ALA
192
60.02
165.17
0.221
0.2
0.221
0.221
1.80
30.0
898
21716
18714
86.2
RANDOM
1
2.0
MOLECULAR REPLACEMENT
pdb id 1bft
Engh & Huber
1.80
30.0
168
1828
0
0
1660
0.005
1.43
1.80
30.0
1MY5
21911
20531
3.0
3.0
0.053
1
21.9
5.6
93.7
0.296
1.80
1.86
3.0
58
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
transcription factor p65
NF-kappaB p65 subunit dimerization domain homodimer
1
N
N
1
N
N
2
N
N
2
N
N
A
SER
240
A
SER
50
HELX_P
A
VAL
244
A
VAL
54
5
1
5
B
SER
240
B
SER
50
HELX_P
B
VAL
244
B
VAL
54
5
2
5
TRANSCRIPTION
Immunoglobulin, Ig, beta-sandwich, beta-sheet, homodimer, DNA-binding, Transcription regulation, Activator, Nuclear protein, Phosphorylation, TRANSCRIPTION
TF65_MOUSE
UNP
1
191
Q04207
TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM
QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR
191
304
1MY5
191
304
Q04207
A
1
1
114
191
304
1MY5
191
304
Q04207
B
1
1
114
3
5
4
3
5
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
196
A
ILE
6
A
VAL
199
A
VAL
9
A
GLU
211
A
GLU
21
A
CYS
216
A
CYS
26
A
ALA
249
A
ALA
59
A
ARG
253
A
ARG
63
A
SER
203
A
SER
13
A
SER
205
A
SER
15
A
MET
284
A
MET
94
A
LEU
289
A
LEU
99
A
VAL
266
A
VAL
76
A
ARG
274
A
ARG
84
A
GLU
225
A
GLU
35
A
GLY
230
A
GLY
40
A
TRP
233
A
TRP
43
A
ARG
236
A
ARG
46
A
SER
203
A
SER
13
A
SER
205
A
SER
15
A
MET
284
A
MET
94
A
LEU
289
A
LEU
99
A
VAL
266
A
VAL
76
A
ARG
274
A
ARG
84
A
GLU
279
A
GLU
89
A
LEU
280
A
LEU
90
B
ILE
196
B
ILE
6
B
VAL
199
B
VAL
9
B
GLU
211
B
GLU
21
B
CYS
216
B
CYS
26
B
ALA
249
B
ALA
59
B
ARG
253
B
ARG
63
B
SER
203
B
SER
13
B
SER
205
B
SER
15
B
MET
284
B
MET
94
B
LEU
289
B
LEU
99
B
VAL
266
B
VAL
76
B
ARG
274
B
ARG
84
B
GLU
225
B
GLU
35
B
GLY
230
B
GLY
40
B
TRP
233
B
TRP
43
B
ARG
236
B
ARG
46
B
SER
203
B
SER
13
B
SER
205
B
SER
15
B
MET
284
B
MET
94
B
LEU
289
B
LEU
99
B
VAL
266
B
VAL
76
B
ARG
274
B
ARG
84
B
GLU
279
B
GLU
89
B
LEU
280
B
LEU
90
20
C 2 2 21