0.031496
0.000000
0.000000
0.000000
0.012681
0.000000
0.000000
0.000000
0.011730
0.00000
0.00000
0.00000
Hink-Schauer, C.
Estebanez-Perpina, E.
Wilharm, E.
Fuentes-Prior, P.
Klinkert, W.
Bode, W.
Jenne, D.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
31.750
78.860
85.250
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.BIOL.CHEM.
JBCHA3
0071
0021-9258
277
50923
50933
10.1074/jbc.M207962200
12384499
The 2.2-A Crystal Structure of Human Pro-granzyme K Reveals a Rigid Zymogen with Unusual Features
2002
10.2210/pdb1mzd/pdb
pdb_00001mzd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
291
1
IMAGE PLATE
2000-11-26
MARRESEARCH
CuK alpha
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
26134.189
pro-granzyme K
3.4.21.-
S195A
1
man
polymer
18.015
water
30
nat
water
granzyme K, granzyme 3, NK-tryptase-2
no
no
MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP
FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ
SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN
MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP
FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ
SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
bone marrow
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
B834 (DE3)
plasmid
pET24c+
1
2.04
39.73
VAPOR DIFFUSION, SITTING DROP
8.4
1.6M sodium formate, 2.5mM 2-[N-morpholino]ethane-sulfonic acid, 50mM sodium chloride, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
Refinement description
1
0
2003-01-14
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-11-10
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
1MZA contains granzyme K at 2.23A
RCSB
Y
PDBJ
2002-10-07
REL
REL
HOH
water
1FQ3
granzyme B
PDB
experimental model
TIP
1
2
HOH
HOH
249
A
TIP
2
2
HOH
HOH
250
A
TIP
3
2
HOH
HOH
251
A
TIP
4
2
HOH
HOH
252
A
TIP
5
2
HOH
HOH
253
A
TIP
6
2
HOH
HOH
254
A
TIP
7
2
HOH
HOH
255
A
TIP
8
2
HOH
HOH
256
A
TIP
9
2
HOH
HOH
257
A
TIP
10
2
HOH
HOH
258
A
TIP
11
2
HOH
HOH
259
A
TIP
12
2
HOH
HOH
260
A
TIP
13
2
HOH
HOH
261
A
TIP
14
2
HOH
HOH
262
A
TIP
15
2
HOH
HOH
263
A
TIP
16
2
HOH
HOH
264
A
TIP
17
2
HOH
HOH
265
A
TIP
18
2
HOH
HOH
266
A
TIP
19
2
HOH
HOH
267
A
TIP
20
2
HOH
HOH
268
A
TIP
21
2
HOH
HOH
269
A
TIP
22
2
HOH
HOH
270
A
TIP
23
2
HOH
HOH
271
A
TIP
24
2
HOH
HOH
272
A
TIP
25
2
HOH
HOH
273
A
TIP
26
2
HOH
HOH
274
A
TIP
27
2
HOH
HOH
275
A
TIP
28
2
HOH
HOH
276
A
TIP
29
2
HOH
HOH
277
A
TIP
30
2
HOH
HOH
278
A
MET
14
n
1
MET
14
A
GLU
15
n
2
GLU
15
A
ILE
16
n
3
ILE
16
A
ILE
17
n
4
ILE
17
A
GLY
18
n
5
GLY
18
A
GLY
19
n
6
GLY
19
A
LYS
20
n
7
LYS
20
A
GLU
21
n
8
GLU
21
A
VAL
22
n
9
VAL
22
A
SER
23
n
10
SER
23
A
PRO
24
n
11
PRO
24
A
HIS
25
n
12
HIS
25
A
SER
26
n
13
SER
26
A
ARG
27
n
14
ARG
27
A
PRO
28
n
15
PRO
28
A
PHE
29
n
16
PHE
29
A
MET
30
n
17
MET
30
A
ALA
31
n
18
ALA
31
A
SER
32
n
19
SER
32
A
ILE
33
n
20
ILE
33
A
GLN
34
n
21
GLN
34
A
TYR
35
n
22
TYR
35
A
GLY
37
n
23
GLY
37
A
GLY
38
n
24
GLY
38
A
HIS
39
n
25
HIS
39
A
HIS
40
n
26
HIS
40
A
VAL
41
n
27
VAL
41
A
CYS
42
n
28
CYS
42
A
GLY
43
n
29
GLY
43
A
GLY
44
n
30
GLY
44
A
VAL
45
n
31
VAL
45
A
LEU
46
n
32
LEU
46
A
ILE
47
n
33
ILE
47
A
ASP
48
n
34
ASP
48
A
PRO
49
n
35
PRO
49
A
GLN
50
n
36
GLN
50
A
TRP
51
n
37
TRP
51
A
VAL
52
n
38
VAL
52
A
LEU
53
n
39
LEU
53
A
THR
54
n
40
THR
54
A
ALA
55
n
41
ALA
55
A
ALA
56
n
42
ALA
56
A
HIS
57
n
43
HIS
57
A
CYS
58
n
44
CYS
58
A
GLN
59
n
45
GLN
59
A
TYR
60
n
46
TYR
60
A
ARG
60
n
47
A
ARG
60
A
PHE
60
n
48
B
PHE
60
A
THR
60
n
49
C
THR
60
A
LYS
60
n
50
D
LYS
60
A
GLY
61
n
51
GLY
61
A
GLN
62
n
52
GLN
62
A
SER
63
n
53
SER
63
A
PRO
64
n
54
PRO
64
A
THR
65
n
55
THR
65
A
VAL
66
n
56
VAL
66
A
VAL
67
n
57
VAL
67
A
LEU
68
n
58
LEU
68
A
GLY
69
n
59
GLY
69
A
ALA
70
n
60
ALA
70
A
HIS
71
n
61
HIS
71
A
SER
72
n
62
SER
72
A
LEU
73
n
63
LEU
73
A
SER
74
n
64
SER
74
A
LYS
75
n
65
LYS
75
A
ASN
76
n
66
ASN
76
A
GLU
77
n
67
GLU
77
A
ALA
78
n
68
ALA
78
A
SER
79
n
69
SER
79
A
LYS
80
n
70
LYS
80
A
GLN
81
n
71
GLN
81
A
THR
82
n
72
THR
82
A
LEU
83
n
73
LEU
83
A
GLU
84
n
74
GLU
84
A
ILE
85
n
75
ILE
85
A
LYS
86
n
76
LYS
86
A
LYS
87
n
77
LYS
87
A
PHE
88
n
78
PHE
88
A
ILE
89
n
79
ILE
89
A
PRO
90
n
80
PRO
90
A
PHE
91
n
81
PHE
91
A
SER
92
n
82
SER
92
A
ARG
93
n
83
ARG
93
A
VAL
94
n
84
VAL
94
A
THR
95
n
85
THR
95
A
SER
96
n
86
SER
96
A
ASP
97
n
87
ASP
97
A
PRO
98
n
88
PRO
98
A
GLN
99
n
89
GLN
99
A
SER
100
n
90
SER
100
A
ASN
101
n
91
ASN
101
A
ASP
102
n
92
ASP
102
A
ILE
103
n
93
ILE
103
A
MET
104
n
94
MET
104
A
LEU
105
n
95
LEU
105
A
VAL
106
n
96
VAL
106
A
LYS
107
n
97
LYS
107
A
LEU
108
n
98
LEU
108
A
GLN
109
n
99
GLN
109
A
THR
110
n
100
THR
110
A
ALA
111
n
101
ALA
111
A
ALA
112
n
102
ALA
112
A
LYS
113
n
103
LYS
113
A
LEU
114
n
104
LEU
114
A
ASN
115
n
105
ASN
115
A
LYS
116
n
106
LYS
116
A
HIS
117
n
107
HIS
117
A
VAL
118
n
108
VAL
118
A
LYS
119
n
109
LYS
119
A
MET
120
n
110
MET
120
A
LEU
121
n
111
LEU
121
A
HIS
122
n
112
HIS
122
A
ILE
123
n
113
ILE
123
A
ARG
124
n
114
ARG
124
A
SER
125
n
115
SER
125
A
LYS
126
n
116
LYS
126
A
THR
128
n
117
THR
128
A
SER
129
n
118
SER
129
A
LEU
130
n
119
LEU
130
A
ARG
131
n
120
ARG
131
A
SER
132
n
121
SER
132
A
GLY
133
n
122
GLY
133
A
THR
134
n
123
THR
134
A
LYS
135
n
124
LYS
135
A
CYS
136
n
125
CYS
136
A
LYS
137
n
126
LYS
137
A
VAL
138
n
127
VAL
138
A
THR
139
n
128
THR
139
A
GLY
140
n
129
GLY
140
A
TRP
141
n
130
TRP
141
A
GLY
142
n
131
GLY
142
A
ALA
143
n
132
ALA
143
A
THR
144
n
133
THR
144
A
ASP
145
n
134
ASP
145
A
PRO
146
n
135
PRO
146
A
ASP
147
n
136
ASP
147
A
SER
148
n
137
SER
148
A
LEU
148
n
138
A
LEU
148
A
ARG
149
n
139
ARG
149
A
PRO
151
n
140
PRO
151
A
SER
152
n
141
SER
152
A
ASP
153
n
142
ASP
153
A
THR
154
n
143
THR
154
A
LEU
155
n
144
LEU
155
A
ARG
156
n
145
ARG
156
A
GLU
157
n
146
GLU
157
A
VAL
158
n
147
VAL
158
A
THR
159
n
148
THR
159
A
VAL
160
n
149
VAL
160
A
THR
161
n
150
THR
161
A
VAL
162
n
151
VAL
162
A
LEU
163
n
152
LEU
163
A
SER
164
n
153
SER
164
A
ARG
165
n
154
ARG
165
A
LYS
166
n
155
LYS
166
A
LEU
167
n
156
LEU
167
A
CYS
168
n
157
CYS
168
A
ASN
169
n
158
ASN
169
A
SER
170
n
159
SER
170
A
GLN
170
n
160
A
GLN
170
A
SER
170
n
161
B
SER
170
A
TYR
171
n
162
TYR
171
A
TYR
172
n
163
TYR
172
A
ASN
173
n
164
ASN
173
A
GLY
173
n
165
A
GLY
173
A
ASP
173
n
166
B
ASP
173
A
PRO
174
n
167
PRO
174
A
PHE
175
n
168
PHE
175
A
ILE
176
n
169
ILE
176
A
THR
177
n
170
THR
177
A
LYS
178
n
171
LYS
178
A
ASP
179
n
172
ASP
179
A
MET
180
n
173
MET
180
A
VAL
181
n
174
VAL
181
A
CYS
182
n
175
CYS
182
A
ALA
183
n
176
ALA
183
A
GLY
184
n
177
GLY
184
A
ASP
185
n
178
ASP
185
A
ALA
186
n
179
ALA
186
A
LYS
187
n
180
LYS
187
A
GLY
188
n
181
GLY
188
A
GLN
188
n
182
A
GLN
188
A
LYS
188
n
183
B
LYS
188
A
ASP
189
n
184
ASP
189
A
SER
190
n
185
SER
190
A
CYS
191
n
186
CYS
191
A
LYS
192
n
187
LYS
192
A
GLY
193
n
188
GLY
193
A
ASP
194
n
189
ASP
194
A
ALA
195
n
190
ALA
195
A
GLY
196
n
191
GLY
196
A
GLY
197
n
192
GLY
197
A
PRO
198
n
193
PRO
198
A
LEU
199
n
194
LEU
199
A
ILE
200
n
195
ILE
200
A
CYS
201
n
196
CYS
201
A
LYS
202
n
197
LYS
202
A
GLY
205
n
198
GLY
205
A
VAL
208
n
199
VAL
208
A
PHE
209
n
200
PHE
209
A
HIS
210
n
201
HIS
210
A
ALA
211
n
202
ALA
211
A
ILE
212
n
203
ILE
212
A
VAL
213
n
204
VAL
213
A
SER
214
n
205
SER
214
A
GLY
215
n
206
GLY
215
A
GLY
216
n
207
GLY
216
A
HIS
217
n
208
HIS
217
A
GLU
219
n
209
GLU
219
A
CYS
220
n
210
CYS
220
A
GLY
221
n
211
GLY
221
A
VAL
222
n
212
VAL
222
A
ALA
223
n
213
ALA
223
A
THR
223
n
214
A
THR
223
A
LYS
224
n
215
LYS
224
A
PRO
225
n
216
PRO
225
A
GLY
226
n
217
GLY
226
A
ILE
227
n
218
ILE
227
A
TYR
228
n
219
TYR
228
A
THR
229
n
220
THR
229
A
LEU
230
n
221
LEU
230
A
LEU
231
n
222
LEU
231
A
THR
232
n
223
THR
232
A
LYS
232
n
224
A
LYS
232
A
LYS
233
n
225
LYS
233
A
TYR
234
n
226
TYR
234
A
GLN
235
n
227
GLN
235
A
THR
236
n
228
THR
236
A
TRP
237
n
229
TRP
237
A
ILE
238
n
230
ILE
238
A
LYS
239
n
231
LYS
239
A
SER
240
n
232
SER
240
A
ASN
241
n
233
ASN
241
A
LEU
242
n
234
LEU
242
A
VAL
243
n
235
VAL
243
A
PRO
244
n
236
PRO
244
A
PRO
245
n
237
PRO
245
A
HIS
246
n
238
HIS
246
A
THR
247
n
239
THR
247
A
ASN
248
n
240
ASN
248
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
20
A
O
LYS
7
A
N
GLU
157
A
N
GLU
146
A
N
VAL
160
A
N
VAL
149
A
O
CYS
136
A
O
CYS
125
A
N
THR
139
A
N
THR
128
A
O
PRO
198
A
O
PRO
193
A
N
CYS
201
A
N
CYS
196
A
O
VAL
208
A
O
VAL
199
A
O
ILE
212
A
O
ILE
203
A
N
THR
229
A
N
THR
220
A
O
TYR
228
A
O
TYR
219
A
N
VAL
181
A
N
VAL
174
A
N
GLY
184
A
N
GLY
177
A
O
THR
161
A
O
THR
150
A
N
VAL
41
A
N
VAL
27
A
O
ILE
33
A
O
ILE
20
A
O
GLN
34
A
O
GLN
21
A
N
THR
65
A
N
THR
55
A
N
LEU
68
A
N
LEU
58
A
O
GLN
81
A
O
GLN
71
A
O
ILE
89
A
O
ILE
79
A
N
LEU
105
A
N
LEU
95
A
N
VAL
106
A
N
VAL
96
A
O
VAL
52
A
O
VAL
38
A
N
LEU
53
A
N
LEU
39
A
O
VAL
45
A
O
VAL
31
1
A
N
ILE
16
A
N
ILE
3
0
Y
1
A
CA
ILE
16
A
CA
ILE
3
0
Y
1
A
C
ILE
16
A
C
ILE
3
0
Y
1
A
O
ILE
16
A
O
ILE
3
0
Y
1
A
CB
ILE
16
A
CB
ILE
3
0
Y
1
A
CG1
ILE
16
A
CG1
ILE
3
0
Y
1
A
CG2
ILE
16
A
CG2
ILE
3
0
Y
1
A
N
ILE
17
A
N
ILE
4
0
Y
1
A
CA
ILE
17
A
CA
ILE
4
0
Y
1
A
C
ILE
17
A
C
ILE
4
0
Y
1
A
O
ILE
17
A
O
ILE
4
0
Y
1
A
CB
ILE
17
A
CB
ILE
4
0
Y
1
A
CG1
ILE
17
A
CG1
ILE
4
0
Y
1
A
CG2
ILE
17
A
CG2
ILE
4
0
Y
1
A
CG
LYS
20
A
CG
LYS
7
0
Y
1
A
CD
LYS
20
A
CD
LYS
7
0
Y
1
A
CE
LYS
20
A
CE
LYS
7
0
Y
1
A
NZ
LYS
20
A
NZ
LYS
7
0
Y
1
A
CG
HIS
39
A
CG
HIS
25
0
Y
1
A
ND1
HIS
39
A
ND1
HIS
25
0
Y
1
A
CD2
HIS
39
A
CD2
HIS
25
0
Y
1
A
CE1
HIS
39
A
CE1
HIS
25
0
Y
1
A
NE2
HIS
39
A
NE2
HIS
25
0
Y
D
1
A
CG
LYS
60
A
CG
LYS
50
0
Y
D
1
A
CD
LYS
60
A
CD
LYS
50
0
Y
D
1
A
CE
LYS
60
A
CE
LYS
50
0
Y
D
1
A
NZ
LYS
60
A
NZ
LYS
50
0
Y
1
A
CB
SER
63
A
CB
SER
53
0
Y
1
A
OG
SER
63
A
OG
SER
53
0
Y
1
A
OG
SER
74
A
OG
SER
64
0
Y
1
A
CE
LYS
75
A
CE
LYS
65
0
Y
1
A
NZ
LYS
75
A
NZ
LYS
65
0
Y
1
A
CB
LYS
86
A
CB
LYS
76
0
Y
1
A
CG
LYS
86
A
CG
LYS
76
0
Y
1
A
CD
LYS
86
A
CD
LYS
76
0
Y
1
A
CE
LYS
86
A
CE
LYS
76
0
Y
1
A
NZ
LYS
86
A
NZ
LYS
76
0
Y
1
A
CD
LYS
87
A
CD
LYS
77
0
Y
1
A
CE
LYS
87
A
CE
LYS
77
0
Y
1
A
NZ
LYS
87
A
NZ
LYS
77
0
Y
1
A
CG
ARG
93
A
CG
ARG
83
0
Y
1
A
CD
ARG
93
A
CD
ARG
83
0
Y
1
A
NE
ARG
93
A
NE
ARG
83
0
Y
1
A
CZ
ARG
93
A
CZ
ARG
83
0
Y
1
A
NH1
ARG
93
A
NH1
ARG
83
0
Y
1
A
NH2
ARG
93
A
NH2
ARG
83
0
Y
1
A
CD
GLN
99
A
CD
GLN
89
0
Y
1
A
OE1
GLN
99
A
OE1
GLN
89
0
Y
1
A
NE2
GLN
99
A
NE2
GLN
89
0
Y
1
A
CB
SER
100
A
CB
SER
90
0
Y
1
A
OG
SER
100
A
OG
SER
90
0
Y
1
A
CD
GLN
109
A
CD
GLN
99
0
Y
1
A
OE1
GLN
109
A
OE1
GLN
99
0
Y
1
A
NE2
GLN
109
A
NE2
GLN
99
0
Y
1
A
CG
LYS
113
A
CG
LYS
103
0
Y
1
A
CD
LYS
113
A
CD
LYS
103
0
Y
1
A
CE
LYS
113
A
CE
LYS
103
0
Y
1
A
NZ
LYS
113
A
NZ
LYS
103
0
Y
1
A
CG
LYS
119
A
CG
LYS
109
0
Y
1
A
CD
LYS
119
A
CD
LYS
109
0
Y
1
A
CE
LYS
119
A
CE
LYS
109
0
Y
1
A
NZ
LYS
119
A
NZ
LYS
109
0
Y
1
A
CE
MET
120
A
CE
MET
110
0
Y
1
A
CG
LYS
135
A
CG
LYS
124
0
Y
1
A
CD
LYS
135
A
CD
LYS
124
0
Y
1
A
CE
LYS
135
A
CE
LYS
124
0
Y
1
A
NZ
LYS
135
A
NZ
LYS
124
0
Y
1
A
CG
LYS
137
A
CG
LYS
126
0
Y
1
A
CD
LYS
137
A
CD
LYS
126
0
Y
1
A
CE
LYS
137
A
CE
LYS
126
0
Y
1
A
NZ
LYS
137
A
NZ
LYS
126
0
Y
1
A
CB
ASP
145
A
CB
ASP
134
0
Y
1
A
CG
ASP
145
A
CG
ASP
134
0
Y
1
A
OD1
ASP
145
A
OD1
ASP
134
0
Y
1
A
OD2
ASP
145
A
OD2
ASP
134
0
Y
1
A
CB
SER
148
A
CB
SER
137
0
Y
1
A
OG
SER
148
A
OG
SER
137
0
Y
A
1
A
CB
GLN
170
A
CB
GLN
160
0
Y
A
1
A
CG
GLN
170
A
CG
GLN
160
0
Y
A
1
A
CD
GLN
170
A
CD
GLN
160
0
Y
A
1
A
OE1
GLN
170
A
OE1
GLN
160
0
Y
A
1
A
NE2
GLN
170
A
NE2
GLN
160
0
Y
1
A
CD
LYS
187
A
CD
LYS
180
0
Y
1
A
CE
LYS
187
A
CE
LYS
180
0
Y
1
A
NZ
LYS
187
A
NZ
LYS
180
0
Y
1
A
CB
ASP
189
A
CB
ASP
184
0
Y
1
A
CG
ASP
189
A
CG
ASP
184
0
Y
1
A
OD1
ASP
189
A
OD1
ASP
184
0
Y
1
A
OD2
ASP
189
A
OD2
ASP
184
0
Y
1
A
CD
LYS
224
A
CD
LYS
215
0
Y
1
A
CE
LYS
224
A
CE
LYS
215
0
Y
1
A
NZ
LYS
224
A
NZ
LYS
215
0
Y
1
A
CG
LYS
239
A
CG
LYS
231
0
Y
1
A
CD
LYS
239
A
CD
LYS
231
0
Y
1
A
CE
LYS
239
A
CE
LYS
231
0
Y
1
A
NZ
LYS
239
A
NZ
LYS
231
0
Y
1
A
C
PRO
245
A
C
PRO
237
0
Y
1
A
O
PRO
245
A
O
PRO
237
0
Y
1
A
N
ASN
248
A
N
ASN
240
0
Y
1
A
CA
ASN
248
A
CA
ASN
240
0
Y
1
A
C
ASN
248
A
C
ASN
240
0
Y
1
A
CB
ASN
248
A
CB
ASN
240
0
Y
1
A
CG
ASN
248
A
CG
ASN
240
0
Y
1
A
OD1
ASN
248
A
OD1
ASN
240
0
Y
1
A
ND2
ASN
248
A
ND2
ASN
240
0
Y
1
A
MET
14
A
MET
1
0
Y
1
A
GLU
15
A
GLU
2
0
Y
1
A
GLY
18
A
GLY
5
0
Y
1
A
VAL
94
A
VAL
84
0
Y
1
A
THR
95
A
THR
85
0
Y
1
A
SER
96
A
SER
86
0
Y
1
A
ASP
97
A
ASP
87
0
Y
1
A
PRO
98
A
PRO
88
0
Y
1
A
HIS
246
A
HIS
238
0
Y
1
A
THR
247
A
THR
239
0
Y
1
A
ILE
16
63.04
125.23
1
A
PRO
24
-33.07
120.37
1
A
PRO
28
-42.08
-11.48
1
A
ASP
48
-172.44
141.48
1
A
PRO
49
-30.79
-33.79
1
A
CYS
58
-66.15
7.15
B
1
A
PHE
60
-91.36
48.35
1
A
GLN
62
57.65
74.28
1
A
SER
63
-38.03
107.05
1
A
VAL
94
67.27
-70.96
1
A
THR
95
-129.41
-70.39
1
A
SER
96
52.46
-145.05
1
A
GLN
99
-116.79
-110.18
1
A
SER
100
-54.28
-176.79
1
A
ASP
102
-69.61
74.21
1
A
ASN
115
-120.61
-161.55
1
A
SER
125
-125.18
-127.47
1
A
TYR
171
-106.72
-132.55
1
A
ASN
173
39.72
56.52
1
A
ASP
189
-83.50
-71.21
1
A
CYS
191
-110.69
-129.18
1
A
LYS
224
-117.11
72.31
1
A
PRO
245
-89.16
-129.45
1
A
HIS
246
-141.35
26.29
26.8
0.316738
0.223642
2.9
22
498
4549
498
88.8
random
1
anisotropic
THROUGHOUT
0.0
0.0
FOURIER SYNTHESIS
granzyme B
Engh & Huber
2.9
22
30
1859
0
0
1829
1.28094
0.006722
2.9
50
1MZD
39313
10537
0.0
0.0
0.147
1
88.8
2.9
3.0
477
92.5
data reduction
MOSFLM
data reduction
CCP4
phasing
AMoRE
refinement
CNS
data scaling
CCP4
crystal structure of human pro-granzyme K
1
N
N
2
N
N
A
SER
164
A
SER
153
HELX_P
A
ASN
169
A
ASN
158
1
1
6
A
THR
232
A
THR
223
HELX_P
A
VAL
243
A
VAL
235
1
2
13
disulf
2.021
A
CYS
42
A
SG
CYS
28
1_555
A
CYS
58
A
SG
CYS
44
1_555
disulf
2.036
A
CYS
136
A
SG
CYS
125
1_555
A
CYS
201
A
SG
CYS
196
1_555
disulf
2.030
A
CYS
168
A
SG
CYS
157
1_555
A
CYS
182
A
SG
CYS
175
1_555
disulf
2.040
A
CYS
191
A
SG
CYS
186
1_555
A
CYS
220
A
SG
CYS
210
1_555
HYDROLASE
granzyme, apoptosis, serine protease, S1 family, HYDROLASE
A
ASP
173
A
ASP
166
B
1
A
PRO
174
A
PRO
167
0.05
A
VAL
243
A
VAL
235
1
A
PRO
244
A
PRO
236
0.01
GRAK_HUMAN
UNP
1
25
P49863
MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIP
FSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ
SYYNGDPFITKDMVCAGDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPHTN
25
264
1MZD
14
248
P49863
A
1
1
240
1
SER
engineered mutation
ALA
195
1MZD
A
P49863
UNP
214
190
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
20
A
LYS
7
A
GLU
21
A
GLU
8
A
ARG
156
A
ARG
145
A
VAL
162
A
VAL
151
A
LYS
135
A
LYS
124
A
GLY
140
A
GLY
129
A
PRO
198
A
PRO
193
A
CYS
201
A
CYS
196
A
VAL
208
A
VAL
199
A
VAL
213
A
VAL
204
A
GLY
226
A
GLY
217
A
LEU
230
A
LEU
221
A
MET
180
A
MET
173
A
GLY
184
A
GLY
177
A
ARG
156
A
ARG
145
A
VAL
162
A
VAL
151
A
HIS
39
A
HIS
25
A
CYS
42
A
CYS
28
A
SER
32
A
SER
19
A
TYR
35
A
TYR
22
A
PRO
64
A
PRO
54
A
LEU
68
A
LEU
58
A
GLN
81
A
GLN
71
A
PRO
90
A
PRO
80
A
MET
104
A
MET
94
A
LEU
108
A
LEU
98
A
TRP
51
A
TRP
37
A
THR
54
A
THR
40
A
VAL
45
A
VAL
31
A
ASP
48
A
ASP
34
19
P 21 21 21