1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Barbato, G.
Bianchi, E.
Ingallinella, P.
Hurni, W.H.
Miller, M.D.
Ciliberto, G.
Cortese, R.
Bazzo, R.
Shiver, J.W.
Pessi, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
330
1101
1115
10.1016/S0022-2836(03)00611-9
12860131
Structural analysis of the epitope of the anti-HIV antibody 2F5 sheds light into its mechanism of neutralization and HIV fusion.
2003
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
1
3
11
Multi-conformational peptide dynamics derived from NMR data: a new search algorithm and its application to antamanide
1991
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
117
1027
1033
NMR analysis of molecular flexibility in solution: a new method for the study of complex distributions of rapidly exchanging conformations. Application to a 13-residue peptide with an 8-residue loop
1995
UK
Protein Eng.
PRENE9
0859
0269-2139
9
1063
1065
An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies
1996
10.2210/pdb1mzi/pdb
pdb_00001mzi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
1617.820
2F5 epitope of HIV-1 gp41 fusion protein
13 residues 2F5 epitope
1
syn
polymer
Envelope polyprotein GP160
no
no
ELLELDKWASLWN
ELLELDKWASLWN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-09-02
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
PDBJ
2002-10-08
REL
GP160 HIV-1 HBX2 isolate amino acids 659-671
sample
Distance restraints were determined using NOESY build-up curves. The coupling constants were determined using phase sensitive COSY and TOCSY experiments. E threshold cutoff and deltaE allowance for MEDUSA were 600 and 100 kCal/mol respectively Clustering was performed with a cutoff of 1.0Angstrom A conformer was defined as different if either phi or psi angle for at least one aminoacid was differing by >15 degrees
Base set ensemble representative of the conformational space experimentally allowed
6400
81
2D NOESY
2D TOCSY
PE-COSY
HSQC (1H-13C)-Dipsi-2(1H)
HMQC (1H-15N) jr
50mM phosphate buffer
6.5
ambient
278
K
Ensemble generation with MEDUSA, Clustering analysis with NMRCLUST, Statistical analysis of the ensemble with NAMFIS
1.5mM peptide, 50mM phosphate buffer, pH 6.5
95% H2O/5% D2O
1.5mM peptide, 50mM phosphate buffer, pH 6.5
100% D2O
Delaglio, F.
data analysis
NMRPipe
2001
Johnson, B.
data analysis
NMRView
2001
MSI, Inc
refinement
DGII
MSI
Cicero D.
refinement
NAMFIS
1.0
Brushweiler R.
refinement
MEDUSA
in home
Kelley
refinement
NMRCLUST
1.2
600
Bruker
DRX
500
Bruker
DRX
GLU
1
n
1
GLU
1
A
LEU
2
n
2
LEU
2
A
LEU
3
n
3
LEU
3
A
GLU
4
n
4
GLU
4
A
LEU
5
n
5
LEU
5
A
ASP
6
n
6
ASP
6
A
LYS
7
n
7
LYS
7
A
TRP
8
n
8
TRP
8
A
ALA
9
n
9
ALA
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
TRP
12
n
12
TRP
12
A
ASN
13
n
13
ASN
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
12
A
CA
SER
10
PLANAR
17
A
CA
LEU
11
PLANAR
18
A
CA
LEU
3
PLANAR
18
A
CA
TRP
12
PLANAR
22
A
CA
LEU
11
PLANAR
28
A
CA
LEU
3
PLANAR
31
A
CA
LEU
3
PLANAR
31
A
CA
LEU
5
PLANAR
35
A
CA
LEU
11
PLANAR
1
A
A
HA
H
ASP
LYS
6
7
1.35
1
A
A
C
H
ASP
LYS
6
7
1.59
4
A
A
C
H
ASP
LYS
6
7
1.56
8
A
A
O
H
ASP
ALA
6
9
1.46
13
A
A
O
H
LYS
ALA
7
9
1.57
25
A
A
O
H
ASP
ALA
6
9
1.48
27
A
A
C
H
LYS
TRP
7
8
1.54
1
A
A
GLU
LEU
4
5
-102.69
1
A
A
ASP
LYS
6
7
146.36
2
A
A
LEU
TRP
11
12
130.85
4
A
A
GLU
LEU
4
5
-90.34
4
A
A
ASP
LYS
6
7
128.75
4
A
A
LYS
TRP
7
8
143.40
5
A
A
LEU
ASP
5
6
100.37
7
A
A
LEU
GLU
3
4
-136.42
7
A
A
GLU
LEU
4
5
-131.36
7
A
A
ASP
LYS
6
7
141.71
7
A
A
ALA
SER
9
10
-149.34
12
A
A
TRP
ALA
8
9
142.94
12
A
A
ALA
SER
9
10
-146.94
14
A
A
GLU
LEU
4
5
123.21
14
A
A
TRP
ALA
8
9
137.66
14
A
A
SER
LEU
10
11
-125.47
16
A
A
LEU
TRP
11
12
-89.75
17
A
A
SER
LEU
10
11
-143.97
18
A
A
LYS
TRP
7
8
-127.56
20
A
A
TRP
ASN
12
13
-149.13
22
A
A
GLU
LEU
4
5
142.23
22
A
A
ASP
LYS
6
7
-148.60
26
A
A
SER
LEU
10
11
-135.54
27
A
A
GLU
LEU
4
5
33.33
27
A
A
ASP
LYS
6
7
-141.75
27
A
A
TRP
ALA
8
9
-147.97
27
A
A
ALA
SER
9
10
-149.93
27
A
A
SER
LEU
10
11
-137.14
28
A
A
SER
LEU
10
11
-142.41
29
A
A
SER
LEU
10
11
-142.43
30
A
A
GLU
LEU
4
5
-42.65
30
A
A
ASP
LYS
6
7
92.56
30
A
A
SER
LEU
10
11
-135.49
30
A
A
TRP
ASN
12
13
-145.75
31
A
A
GLU
LEU
4
5
-139.31
31
A
A
TRP
ASN
12
13
-81.99
34
A
A
LEU
LEU
2
3
103.20
34
A
A
LYS
TRP
7
8
136.88
35
A
A
LYS
TRP
7
8
143.42
35
A
A
TRP
ALA
8
9
130.43
37
A
A
GLU
LEU
4
5
-129.10
37
A
A
ASP
LYS
6
7
141.91
38
A
A
ALA
SER
9
10
113.78
38
A
A
SER
LEU
10
11
-146.98
39
A
A
LEU
GLU
3
4
-122.32
39
A
A
GLU
LEU
4
5
-60.87
39
A
A
ASP
LYS
6
7
-123.23
39
A
A
LYS
TRP
7
8
95.15
40
A
A
LEU
TRP
11
12
123.50
41
A
A
TRP
ALA
8
9
122.39
42
A
A
TRP
ALA
8
9
137.33
42
A
A
ALA
SER
9
10
143.36
43
A
A
TRP
ALA
8
9
135.09
44
A
A
ASP
LYS
6
7
118.70
44
A
A
LEU
TRP
11
12
-146.55
45
A
A
LEU
ASP
5
6
145.19
45
A
A
ASP
LYS
6
7
149.02
45
A
A
TRP
ALA
8
9
120.12
45
A
A
ALA
SER
9
10
-137.66
47
A
A
LYS
TRP
7
8
130.56
49
A
A
LEU
LEU
2
3
-149.80
49
A
A
GLU
LEU
4
5
-113.20
49
A
A
SER
LEU
10
11
50.15
50
A
A
LEU
GLU
3
4
-121.22
50
A
A
LYS
TRP
7
8
-147.64
51
A
A
GLU
LEU
4
5
138.92
51
A
A
TRP
ALA
8
9
124.22
52
A
A
LYS
TRP
7
8
137.85
52
A
A
TRP
ALA
8
9
77.38
53
A
A
LYS
TRP
7
8
82.13
54
A
A
LEU
GLU
3
4
-130.05
54
A
A
GLU
LEU
4
5
-103.85
54
A
A
LEU
ASP
5
6
137.59
57
A
A
LEU
ASP
5
6
-60.50
58
A
A
LEU
ASP
5
6
-125.29
59
A
A
ALA
SER
9
10
147.11
60
A
A
LYS
TRP
7
8
-134.45
63
A
A
SER
LEU
10
11
-139.49
63
A
A
LEU
TRP
11
12
-137.52
66
A
A
GLU
LEU
4
5
-37.12
67
A
A
LEU
ASP
5
6
137.30
68
A
A
LYS
TRP
7
8
-143.52
69
A
A
GLU
LEU
4
5
-140.09
69
A
A
TRP
ALA
8
9
127.19
70
A
A
TRP
ALA
8
9
141.57
70
A
A
SER
LEU
10
11
-136.22
71
A
A
LEU
ASP
5
6
-101.86
71
A
A
ALA
SER
9
10
147.91
71
A
A
SER
LEU
10
11
-144.90
72
A
A
LEU
GLU
3
4
101.45
72
A
A
GLU
LEU
4
5
-31.13
72
A
A
ALA
SER
9
10
-122.44
73
A
A
ASP
LYS
6
7
148.72
73
A
A
ALA
SER
9
10
-120.48
73
A
A
SER
LEU
10
11
92.21
74
A
A
ALA
SER
9
10
-147.74
75
A
A
LYS
TRP
7
8
-130.61
75
A
A
SER
LEU
10
11
145.31
76
A
A
LEU
ASP
5
6
-111.45
76
A
A
SER
LEU
10
11
-141.59
77
A
A
SER
LEU
10
11
-138.31
78
A
A
ASP
LYS
6
7
114.15
78
A
A
LYS
TRP
7
8
-109.37
78
A
A
LEU
TRP
11
12
-128.37
79
A
A
TRP
ALA
8
9
124.28
17
A
ASN
13
0.070
SIDE CHAIN
22
A
ASN
13
0.084
SIDE CHAIN
29
A
ASN
13
0.075
SIDE CHAIN
1
-5.99
0.90
109.00
103.01
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
12
12
12
N
4
-14.20
2.20
117.20
103.00
A
A
A
CA
C
N
ASP
ASP
LYS
6
6
7
Y
4
13.39
1.90
113.70
127.09
A
A
A
CA
CB
CG
TRP
TRP
TRP
8
8
8
N
6
-8.91
1.40
110.10
101.19
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
7
11.90
1.90
110.20
122.10
A
A
A
CB
CA
C
LEU
LEU
LEU
3
3
3
N
7
21.63
1.80
110.60
132.23
A
A
A
N
CA
CB
ASP
ASP
ASP
6
6
6
N
12
-10.54
1.40
110.10
99.56
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
12
16.85
2.70
111.00
127.85
A
A
A
N
CA
C
SER
SER
SER
10
10
10
N
14
-9.91
1.60
122.70
112.79
A
A
A
O
C
N
GLU
GLU
LEU
1
1
2
Y
14
-11.18
1.60
122.70
111.52
A
A
A
O
C
N
LEU
LEU
LEU
2
2
3
Y
14
12.89
2.00
110.40
123.29
A
A
A
CB
CA
C
ASP
ASP
ASP
6
6
6
N
14
15.02
2.00
110.40
125.42
A
A
A
CB
CA
C
TRP
TRP
TRP
8
8
8
N
14
-5.44
0.90
109.00
103.56
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
8
8
8
N
14
-11.91
1.40
110.10
98.19
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
15
8.37
1.30
126.60
134.97
A
A
A
CB
CG
CD2
TRP
TRP
TRP
12
12
12
N
17
19.49
2.20
117.20
136.69
A
A
A
CA
C
N
LEU
LEU
TRP
11
11
12
Y
17
-15.74
1.60
122.70
106.96
A
A
A
O
C
N
LEU
LEU
TRP
11
11
12
Y
18
-9.28
1.40
110.10
100.82
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
18
24.24
2.00
110.40
134.64
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
22
-9.65
1.60
122.70
113.05
A
A
A
O
C
N
GLU
GLU
LEU
1
1
2
Y
22
20.21
2.00
110.40
130.61
A
A
A
CB
CA
C
TRP
TRP
TRP
8
8
8
N
22
12.69
1.90
113.70
126.39
A
A
A
CA
CB
CG
TRP
TRP
TRP
8
8
8
N
22
-12.18
1.40
110.10
97.92
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
22
17.15
2.70
111.00
128.15
A
A
A
N
CA
C
LEU
LEU
LEU
11
11
11
N
23
-10.54
1.40
110.10
99.56
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
24
21.53
1.90
110.10
131.63
A
A
A
CB
CA
C
SER
SER
SER
10
10
10
N
27
13.18
1.90
113.70
126.88
A
A
A
CA
CB
CG
TRP
TRP
TRP
8
8
8
N
27
-7.98
1.30
127.00
119.02
A
A
A
CB
CG
CD1
TRP
TRP
TRP
8
8
8
N
27
17.47
1.50
110.10
127.57
A
A
A
CB
CA
C
ALA
ALA
ALA
9
9
9
N
27
11.46
1.90
110.20
121.66
A
A
A
CB
CA
C
LEU
LEU
LEU
11
11
11
N
27
8.00
1.30
126.60
134.60
A
A
A
CB
CG
CD2
TRP
TRP
TRP
12
12
12
N
27
-8.57
1.30
127.00
118.43
A
A
A
CB
CG
CD1
TRP
TRP
TRP
12
12
12
N
27
-5.68
0.90
109.00
103.32
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
12
12
12
N
28
-9.75
1.40
110.10
100.35
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
28
13.17
1.90
110.20
123.37
A
A
A
CB
CA
C
LEU
LEU
LEU
11
11
11
N
28
18.16
2.70
111.00
129.16
A
A
A
N
CA
C
LEU
LEU
LEU
11
11
11
N
28
13.01
2.00
110.40
123.41
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
28
12.89
1.90
113.70
126.59
A
A
A
CA
CB
CG
TRP
TRP
TRP
12
12
12
N
29
17.38
2.00
110.40
127.78
A
A
A
CB
CA
C
TRP
TRP
TRP
8
8
8
N
29
-5.47
0.90
109.00
103.53
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
8
8
8
N
29
-10.34
1.40
110.10
99.76
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
30
-10.19
1.60
122.70
112.51
A
A
A
O
C
N
LEU
LEU
ASP
5
5
6
Y
30
11.23
1.80
110.60
121.83
A
A
A
N
CA
CB
ASP
ASP
ASP
6
6
6
N
30
12.02
2.00
110.40
122.42
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
31
19.06
1.90
110.20
129.26
A
A
A
CB
CA
C
LEU
LEU
LEU
3
3
3
N
31
11.54
1.90
110.20
121.74
A
A
A
CB
CA
C
LEU
LEU
LEU
5
5
5
N
31
17.37
2.00
110.40
127.77
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
33
-10.39
1.40
110.10
99.71
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
35
19.19
2.70
111.00
130.19
A
A
A
N
CA
C
LYS
LYS
LYS
7
7
7
N
35
20.07
2.00
110.40
130.47
A
A
A
CB
CA
C
TRP
TRP
TRP
8
8
8
N
35
-9.42
1.40
110.10
100.68
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
35
15.79
1.90
110.20
125.99
A
A
A
CB
CA
C
LEU
LEU
LEU
11
11
11
N
35
14.68
2.00
110.40
125.08
A
A
A
N
CA
CB
LEU
LEU
LEU
11
11
11
N
35
14.92
2.30
115.30
130.22
A
A
A
CA
CB
CG
LEU
LEU
LEU
11
11
11
N
37
12.62
1.90
113.70
126.32
A
A
A
CA
CB
CG
TRP
TRP
TRP
8
8
8
N
37
14.08
1.90
110.10
124.18
A
A
A
CB
CA
C
SER
SER
SER
10
10
10
N
37
11.60
1.90
113.70
125.30
A
A
A
CA
CB
CG
TRP
TRP
TRP
12
12
12
N
39
14.61
2.20
117.20
131.81
A
A
A
CA
C
N
GLU
GLU
LEU
1
1
2
Y
39
-10.07
1.60
122.70
112.63
A
A
A
O
C
N
GLU
GLU
LEU
1
1
2
Y
39
18.51
2.00
110.40
128.91
A
A
A
N
CA
CB
LEU
LEU
LEU
2
2
2
N
39
13.91
2.20
117.20
131.11
A
A
A
CA
C
N
LEU
LEU
LEU
2
2
3
Y
39
-9.99
1.60
122.70
112.71
A
A
A
O
C
N
LEU
LEU
LEU
2
2
3
Y
39
9.14
1.40
110.10
119.24
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
41
14.44
2.00
110.40
124.84
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
42
13.96
1.50
110.50
124.46
A
A
A
N
CA
CB
SER
SER
SER
10
10
10
N
44
14.99
1.80
110.60
125.59
A
A
A
N
CA
CB
LYS
LYS
LYS
7
7
7
N
44
11.52
1.90
113.70
125.22
A
A
A
CA
CB
CG
TRP
TRP
TRP
12
12
12
N
49
18.47
1.90
113.70
132.17
A
A
A
CA
CB
CG
TRP
TRP
TRP
12
12
12
N
49
-5.76
0.90
109.00
103.24
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
12
12
12
N
51
12.37
1.90
110.20
122.57
A
A
A
CB
CA
C
LEU
LEU
LEU
11
11
11
N
52
14.30
1.80
110.60
124.90
A
A
A
N
CA
CB
GLU
GLU
GLU
4
4
4
N
54
13.96
2.20
117.20
131.16
A
A
A
CA
C
N
GLU
GLU
LEU
1
1
2
Y
54
-9.65
1.60
122.70
113.05
A
A
A
O
C
N
LEU
LEU
LEU
2
2
3
Y
54
13.66
1.80
110.60
124.26
A
A
A
N
CA
CB
ASP
ASP
ASP
6
6
6
N
55
9.34
1.30
126.60
135.94
A
A
A
CB
CG
CD2
TRP
TRP
TRP
8
8
8
N
55
-8.10
1.30
127.00
118.90
A
A
A
CB
CG
CD1
TRP
TRP
TRP
8
8
8
N
55
-10.61
1.60
122.70
112.09
A
A
A
O
C
N
TRP
TRP
ASN
12
12
13
Y
59
9.43
1.50
110.50
119.93
A
A
A
N
CA
CB
SER
SER
SER
10
10
10
N
63
12.92
1.90
110.20
123.12
A
A
A
CB
CA
C
LEU
LEU
LEU
5
5
5
N
63
-14.06
2.20
117.20
103.14
A
A
A
CA
C
N
LYS
LYS
TRP
7
7
8
Y
63
-6.00
0.90
109.00
103.00
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
8
8
8
N
63
-9.59
1.40
110.10
100.51
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
64
-16.70
1.40
110.10
93.40
A
A
A
N
CA
CB
ALA
ALA
ALA
9
9
9
N
64
-5.56
0.90
109.00
103.44
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
12
12
12
N
71
10.61
1.50
110.50
121.11
A
A
A
N
CA
CB
SER
SER
SER
10
10
10
N
73
33.31
2.60
111.60
144.91
A
A
A
CB
CG
CD
LYS
LYS
LYS
7
7
7
N
77
-11.60
1.60
122.70
111.10
A
A
A
O
C
N
LEU
LEU
TRP
11
11
12
Y
79
16.66
2.00
110.40
127.06
A
A
A
CB
CA
C
TRP
TRP
TRP
12
12
12
N
79
13.70
1.90
113.70
127.40
A
A
A
CA
CB
CG
TRP
TRP
TRP
12
12
12
N
79
8.59
1.30
126.60
135.19
A
A
A
CB
CG
CD2
TRP
TRP
TRP
12
12
12
N
79
-8.03
1.30
127.00
118.97
A
A
A
CB
CG
CD1
TRP
TRP
TRP
12
12
12
N
1
A
A
N
CA
LYS
LYS
7
7
0.135
0.020
1.459
1.594
N
1
A
A
CA
CB
ALA
ALA
9
9
0.207
0.021
1.520
1.727
N
4
A
A
CA
CB
ALA
ALA
9
9
0.204
0.021
1.520
1.724
N
27
A
A
CA
CB
ALA
ALA
9
9
0.261
0.021
1.520
1.781
N
37
A
A
CA
CB
ALA
ALA
9
9
0.222
0.021
1.520
1.742
N
49
A
A
CA
CB
ALA
ALA
9
9
0.230
0.021
1.520
1.750
N
63
A
A
CA
CB
ALA
ALA
9
9
0.199
0.021
1.520
1.719
N
64
A
A
CA
CB
ALA
ALA
9
9
0.194
0.021
1.520
1.714
N
1
A
LEU
2
53.24
90.99
1
A
LEU
3
25.92
56.74
1
A
GLU
4
104.70
-61.70
1
A
LEU
5
41.03
86.04
1
A
ASP
6
-24.42
93.46
1
A
LYS
7
85.16
65.28
1
A
TRP
8
56.35
76.81
1
A
ALA
9
31.79
79.03
1
A
SER
10
51.49
-112.12
2
A
SER
10
-78.61
-93.47
2
A
LEU
11
47.05
-146.78
3
A
ASP
6
-174.65
-76.60
4
A
LEU
3
54.89
168.98
4
A
LEU
5
66.13
173.38
4
A
LYS
7
-72.86
-133.44
4
A
ALA
9
156.55
150.66
5
A
LEU
2
74.54
87.44
5
A
GLU
4
-159.60
-62.27
5
A
ASP
6
44.08
-76.78
5
A
ALA
9
66.61
-166.73
5
A
SER
10
75.67
-72.04
5
A
LEU
11
-135.31
-30.40
6
A
LEU
2
-98.44
-116.29
6
A
ASP
6
51.08
86.94
6
A
SER
10
-123.30
-51.07
7
A
LEU
2
-97.45
-128.21
7
A
LEU
3
70.05
-103.01
7
A
GLU
4
-30.33
107.73
7
A
LEU
5
22.10
111.35
7
A
LYS
7
-50.89
172.56
7
A
TRP
8
68.76
-75.67
7
A
ALA
9
-95.15
-146.54
7
A
SER
10
-174.04
34.91
8
A
LYS
7
15.29
-67.88
8
A
TRP
12
23.39
49.48
9
A
ASP
6
-171.68
-64.68
9
A
LYS
7
-151.86
-104.07
10
A
GLU
4
62.64
133.45
10
A
ASP
6
-168.83
-76.86
11
A
ASP
6
-169.00
77.79
11
A
SER
10
-95.87
38.71
12
A
LEU
3
74.20
142.59
12
A
GLU
4
72.77
-67.68
12
A
ASP
6
-109.05
-98.57
12
A
LYS
7
63.78
-156.75
12
A
ALA
9
-93.47
-118.07
12
A
SER
10
37.73
-36.58
12
A
LEU
11
-77.67
-100.60
13
A
LYS
7
22.17
89.74
13
A
TRP
8
60.24
-31.92
14
A
LEU
2
74.12
79.05
14
A
LEU
3
-0.50
84.62
14
A
GLU
4
-127.72
-54.84
14
A
LEU
5
-24.24
-163.74
14
A
ASP
6
55.75
-123.32
14
A
LYS
7
-20.87
-58.03
14
A
SER
10
-102.03
-116.95
14
A
LEU
11
-25.84
-69.35
15
A
LEU
2
-81.35
-114.27
15
A
LEU
3
67.82
117.93
15
A
GLU
4
-137.33
-103.34
15
A
SER
10
-124.25
-74.94
15
A
LEU
11
65.19
-101.14
15
A
TRP
12
160.78
-90.19
16
A
GLU
4
-143.28
-87.41
16
A
LYS
7
-65.41
-179.18
16
A
ALA
9
-14.42
88.60
16
A
SER
10
-100.11
-80.77
16
A
LEU
11
45.75
88.71
17
A
LEU
3
-55.60
-74.40
17
A
LEU
5
-64.82
-84.95
17
A
TRP
12
48.42
102.34
18
A
GLU
4
-97.07
-99.79
18
A
LYS
7
-82.63
39.58
18
A
TRP
8
-44.70
92.57
18
A
TRP
12
-93.32
-114.38
19
A
LEU
2
-89.65
-137.63
19
A
LEU
3
67.82
113.87
19
A
GLU
4
-149.79
-87.54
19
A
SER
10
-130.98
-70.46
19
A
LEU
11
72.60
-86.33
19
A
TRP
12
138.47
-108.16
20
A
GLU
4
-125.04
-68.56
20
A
LEU
5
73.39
122.83
20
A
SER
10
-123.24
-106.49
20
A
LEU
11
45.93
130.92
21
A
ASP
6
95.61
-34.51
22
A
LEU
2
84.43
102.88
22
A
GLU
4
-156.15
-79.88
22
A
ASP
6
-166.93
-41.17
22
A
LYS
7
-125.33
-80.05
22
A
TRP
8
-97.97
55.85
22
A
SER
10
-143.25
-107.38
22
A
LEU
11
6.59
-103.99
23
A
LEU
5
46.84
28.23
23
A
TRP
8
-100.08
62.05
23
A
ALA
9
-151.87
-78.65
23
A
LEU
11
-137.37
-36.37
24
A
LEU
2
77.64
-73.49
24
A
GLU
4
-165.36
-42.71
24
A
ASP
6
-169.95
-58.81
24
A
LYS
7
-95.60
-69.31
24
A
SER
10
-103.61
-133.15
24
A
LEU
11
46.50
-101.72
25
A
ASP
6
-159.98
69.98
25
A
LYS
7
11.45
-73.60
26
A
LEU
2
76.35
-75.22
26
A
GLU
4
-173.24
-71.19
26
A
LEU
5
-89.60
-145.88
26
A
LYS
7
-137.48
-98.09
26
A
TRP
8
37.25
77.47
26
A
ALA
9
-160.19
75.54
26
A
LEU
11
61.89
134.81
26
A
TRP
12
62.01
105.85
27
A
LEU
2
45.62
89.80
27
A
LEU
3
56.16
144.71
27
A
GLU
4
-6.21
-81.80
27
A
LYS
7
30.12
74.79
27
A
ALA
9
46.64
-99.30
27
A
LEU
11
48.21
136.13
28
A
LEU
5
62.10
156.51
28
A
ASP
6
-113.89
-106.39
28
A
LYS
7
78.07
85.89
28
A
ALA
9
-76.81
-162.64
28
A
SER
10
-116.80
-82.23
28
A
LEU
11
-6.87
141.50
28
A
TRP
12
-118.95
-127.19
29
A
LEU
3
79.97
-69.41
29
A
LEU
5
-60.52
-80.90
29
A
LYS
7
-67.24
-73.99
29
A
ALA
9
-140.55
-12.41
29
A
SER
10
-90.40
-108.63
29
A
LEU
11
-13.77
-98.74
30
A
GLU
4
-105.11
-104.96
30
A
LEU
5
-42.48
159.02
30
A
ASP
6
116.58
-168.07
30
A
LYS
7
168.64
145.24
30
A
TRP
12
49.87
-152.94
31
A
LEU
5
25.16
-94.24
31
A
TRP
12
-88.65
-96.31
32
A
LEU
3
-113.20
-92.54
32
A
GLU
4
67.50
157.71
32
A
TRP
8
67.28
-31.62
32
A
ALA
9
76.56
65.28
32
A
TRP
12
-85.82
-104.06
33
A
LEU
3
55.48
90.32
33
A
LEU
5
48.22
26.99
33
A
ALA
9
-130.09
-76.94
34
A
LEU
3
-56.30
-87.09
34
A
GLU
4
-163.09
-84.33
34
A
SER
10
90.42
96.95
35
A
LEU
2
76.18
97.82
35
A
GLU
4
-143.95
-42.29
35
A
LYS
7
-30.50
-9.34
35
A
ALA
9
-85.84
-144.08
35
A
SER
10
13.60
72.70
35
A
LEU
11
147.23
-124.66
36
A
ASP
6
93.38
-31.81
36
A
TRP
8
-154.91
42.42
36
A
ALA
9
49.24
27.14
37
A
LEU
2
64.82
118.90
37
A
GLU
4
74.48
-70.16
37
A
LEU
5
50.79
88.16
37
A
ASP
6
-28.32
148.56
37
A
LYS
7
50.87
14.55
37
A
TRP
8
48.16
25.99
37
A
ALA
9
70.34
52.50
37
A
SER
10
54.97
-112.05
38
A
LEU
2
-78.44
-91.79
38
A
GLU
4
-154.33
-48.11
38
A
LYS
7
-119.77
-71.79
38
A
TRP
8
-66.56
2.63
38
A
SER
10
-155.40
-78.93
38
A
LEU
11
58.91
152.77
38
A
TRP
12
83.16
-77.13
39
A
LEU
2
151.79
-68.82
39
A
LEU
3
59.48
-157.28
39
A
GLU
4
0.41
133.09
39
A
TRP
8
-169.60
69.56
39
A
ALA
9
96.74
125.94
40
A
GLU
4
-98.28
-64.82
40
A
ASP
6
83.34
-61.17
40
A
SER
10
-112.79
65.89
40
A
LEU
11
-126.03
-162.80
40
A
TRP
12
34.86
138.41
41
A
LEU
2
-88.31
-110.59
41
A
LEU
3
70.07
125.87
41
A
GLU
4
-148.15
-90.09
41
A
ALA
9
67.59
164.32
41
A
SER
10
68.02
-105.52
41
A
LEU
11
66.92
-84.78
41
A
TRP
12
124.06
-92.41
42
A
LEU
2
72.31
100.31
42
A
LEU
3
29.09
44.95
42
A
GLU
4
-155.12
-87.33
42
A
LEU
5
43.67
70.64
42
A
ASP
6
-150.03
-24.12
42
A
LYS
7
-38.04
-88.79
42
A
SER
10
154.31
-46.70
43
A
LEU
2
78.56
94.42
43
A
GLU
4
-159.34
-42.59
43
A
ASP
6
90.07
-71.86
43
A
LYS
7
-33.91
-80.05
44
A
GLU
4
86.95
-74.81
44
A
ASP
6
96.61
-61.59
44
A
LYS
7
133.38
129.67
44
A
TRP
8
60.86
-84.54
44
A
ALA
9
-167.20
111.72
45
A
LEU
2
-89.33
-125.05
45
A
LEU
3
51.45
-119.08
45
A
ASP
6
-111.15
59.48
45
A
TRP
8
-95.43
56.77
45
A
LEU
11
71.96
127.71
45
A
TRP
12
55.00
79.52
46
A
LEU
2
77.18
-80.39
46
A
GLU
4
-163.00
-78.01
46
A
TRP
8
-160.13
-35.57
46
A
LEU
11
-96.73
-114.05
47
A
GLU
4
-141.47
-72.37
47
A
ASP
6
-91.35
-92.33
47
A
LYS
7
68.02
75.14
47
A
ALA
9
-103.32
-150.31
47
A
SER
10
83.61
-36.64
47
A
LEU
11
-92.23
-96.53
48
A
LEU
3
67.84
-171.90
48
A
LEU
5
-52.68
102.04
48
A
ASP
6
163.68
127.77
48
A
LYS
7
65.44
134.24
48
A
ALA
9
-165.29
100.64
48
A
SER
10
78.81
127.65
48
A
LEU
11
90.45
-37.99
49
A
LEU
2
54.14
85.70
49
A
LEU
3
3.93
76.87
49
A
GLU
4
76.67
-54.91
49
A
LEU
5
59.72
97.80
49
A
LYS
7
75.01
78.82
49
A
TRP
8
16.95
60.28
49
A
ALA
9
74.45
80.70
49
A
SER
10
88.70
-90.76
50
A
LEU
3
-106.26
-103.69
50
A
GLU
4
23.88
126.12
50
A
LYS
7
-15.25
-75.11
50
A
TRP
8
26.55
94.09
50
A
TRP
12
-88.03
-102.85
51
A
LEU
2
64.54
77.27
51
A
GLU
4
-161.30
-68.17
51
A
ASP
6
152.40
-84.84
51
A
TRP
8
76.18
40.43
51
A
LEU
11
72.09
-85.56
52
A
LEU
3
-111.93
-86.46
52
A
GLU
4
86.36
122.93
52
A
TRP
8
-166.87
70.00
52
A
ALA
9
176.40
60.46
52
A
SER
10
-78.41
-72.05
52
A
TRP
12
-78.19
-86.78
53
A
LEU
2
79.94
-88.63
53
A
GLU
4
-139.36
-68.85
53
A
LEU
5
70.76
-167.92
53
A
ASP
6
-116.74
-82.80
53
A
LYS
7
69.53
133.03
53
A
TRP
8
51.56
-23.14
53
A
SER
10
-56.93
-79.57
53
A
LEU
11
67.48
142.71
54
A
LEU
2
80.75
143.97
54
A
LEU
5
-65.16
-94.43
54
A
ASP
6
-168.56
112.59
54
A
LYS
7
87.47
-55.69
54
A
TRP
8
-141.91
-72.78
54
A
SER
10
88.39
46.66
55
A
LEU
3
63.14
147.27
55
A
ASP
6
58.26
78.72
55
A
TRP
8
-62.03
-71.07
55
A
ALA
9
70.88
-67.89
55
A
TRP
12
49.50
-178.22
56
A
LEU
3
52.86
103.03
56
A
LEU
5
-156.01
40.71
56
A
ASP
6
167.63
-55.23
56
A
SER
10
56.56
92.08
57
A
LEU
5
98.20
82.62
57
A
LEU
11
79.69
152.18
57
A
TRP
12
-135.78
-105.22
58
A
GLU
4
-79.08
-72.49
58
A
ALA
9
74.34
152.40
58
A
SER
10
63.68
84.81
59
A
LEU
5
75.39
97.05
59
A
ASP
6
-64.84
-78.62
59
A
LYS
7
71.96
-69.90
59
A
TRP
8
-18.11
102.04
59
A
SER
10
156.14
83.57
59
A
TRP
12
-126.15
-126.84
60
A
LEU
2
-132.02
-72.89
60
A
LEU
3
-102.28
-160.59
60
A
LEU
5
-74.42
-87.22
60
A
ASP
6
58.00
-103.65
60
A
LYS
7
-162.98
-58.16
60
A
SER
10
71.29
-80.55
60
A
LEU
11
77.30
-65.04
61
A
LEU
2
78.97
-73.18
61
A
LEU
3
75.08
143.22
61
A
LYS
7
82.87
-59.67
61
A
TRP
8
65.69
80.87
61
A
TRP
12
-28.32
150.44
63
A
LEU
2
62.42
119.87
63
A
LEU
3
-47.80
152.38
63
A
GLU
4
63.40
-69.20
63
A
LEU
5
48.52
-113.20
63
A
LYS
7
25.82
70.78
63
A
TRP
8
50.94
152.43
63
A
ALA
9
-150.19
88.66
63
A
SER
10
49.29
84.14
63
A
LEU
11
2.13
-118.33
63
A
TRP
12
-179.31
125.56
64
A
LEU
2
69.40
-91.55
64
A
LEU
3
-61.31
-102.05
64
A
LEU
5
65.38
162.78
64
A
ASP
6
-48.96
-72.04
64
A
LYS
7
87.21
90.72
64
A
TRP
8
59.72
92.99
64
A
SER
10
-167.71
94.69
64
A
LEU
11
54.94
177.09
64
A
TRP
12
-27.25
-28.75
65
A
LEU
2
73.49
146.75
65
A
GLU
4
66.20
-100.68
65
A
LEU
5
65.41
-175.54
65
A
ALA
9
59.07
-140.89
66
A
LEU
2
62.45
98.21
66
A
LEU
3
77.94
115.66
66
A
GLU
4
63.91
77.15
66
A
LEU
5
66.26
94.65
66
A
LYS
7
55.68
79.68
66
A
TRP
8
-108.05
72.30
66
A
ALA
9
-168.16
-67.71
66
A
TRP
12
58.36
100.18
67
A
LEU
2
70.55
85.77
67
A
GLU
4
-143.56
-52.62
67
A
LEU
5
-70.20
-71.48
67
A
ASP
6
-2.88
-43.92
67
A
ALA
9
-162.34
80.04
67
A
SER
10
-155.59
-72.57
67
A
TRP
12
85.62
65.65
68
A
ASP
6
-77.53
-74.72
68
A
LYS
7
-155.47
-33.87
68
A
SER
10
57.70
80.37
68
A
TRP
12
99.46
-54.16
69
A
LEU
2
-74.77
-79.35
69
A
GLU
4
76.05
-60.08
69
A
LEU
5
-69.51
-77.61
69
A
TRP
8
-91.35
48.22
69
A
ALA
9
-99.20
37.11
69
A
SER
10
-151.68
79.69
69
A
LEU
11
177.40
-83.59
70
A
LEU
2
-88.69
-116.16
70
A
LEU
3
37.50
-106.51
70
A
TRP
8
-98.83
58.98
70
A
SER
10
-116.54
-96.20
71
A
LEU
2
76.81
-89.75
71
A
GLU
4
-155.88
-84.05
71
A
LEU
5
64.03
162.70
71
A
ASP
6
-47.50
103.24
71
A
LYS
7
-115.20
78.16
71
A
TRP
8
111.19
64.24
71
A
ALA
9
-121.02
-158.95
71
A
SER
10
131.05
-35.94
72
A
LEU
5
55.12
-158.13
72
A
ASP
6
24.62
-84.31
72
A
TRP
8
-94.12
58.04
72
A
ALA
9
-100.25
-154.95
72
A
SER
10
14.40
150.22
72
A
LEU
11
62.87
-85.21
73
A
LEU
2
69.10
96.67
73
A
LEU
3
55.10
93.73
73
A
GLU
4
160.32
-55.18
73
A
LEU
5
-50.81
109.17
73
A
ASP
6
-132.48
-102.56
73
A
LYS
7
71.72
151.41
73
A
TRP
8
75.79
-32.13
73
A
SER
10
-50.14
-73.24
73
A
LEU
11
48.71
139.62
73
A
TRP
12
30.16
90.09
74
A
LEU
2
71.73
139.69
74
A
GLU
4
87.12
-59.68
74
A
LEU
5
50.59
86.71
74
A
ASP
6
58.49
18.94
74
A
TRP
8
63.76
-81.29
74
A
ALA
9
-141.58
28.62
74
A
SER
10
50.55
-79.93
75
A
LEU
2
74.86
87.39
75
A
GLU
4
-143.66
-75.49
75
A
ASP
6
-133.59
-31.15
75
A
SER
10
-116.46
-145.84
75
A
LEU
11
99.49
-120.56
76
A
LEU
2
81.39
96.97
76
A
GLU
4
-160.27
-72.75
76
A
ASP
6
144.92
-64.36
76
A
LEU
11
11.47
-92.70
77
A
LEU
3
91.89
-78.37
77
A
ASP
6
79.05
-74.23
77
A
TRP
8
-94.46
55.32
77
A
TRP
12
14.67
102.44
78
A
LEU
2
73.34
-90.09
78
A
GLU
4
-158.30
-59.26
78
A
ASP
6
-115.89
-121.38
78
A
LYS
7
117.43
145.60
78
A
TRP
8
-36.30
109.94
78
A
ALA
9
-141.14
41.52
78
A
SER
10
-98.11
-119.67
78
A
LEU
11
67.36
-86.71
78
A
TRP
12
-39.10
-104.88
79
A
GLU
4
-129.63
-63.90
79
A
LEU
5
71.82
120.65
79
A
TRP
8
18.80
97.06
79
A
ALA
9
83.62
-163.99
79
A
SER
10
65.55
-127.19
79
A
LEU
11
68.38
-76.25
79
A
TRP
12
78.27
-84.05
80
A
LYS
7
-168.46
-109.85
81
A
ASP
6
-173.65
-70.09
Solution ensemble structures of HIV-1 gp41 2F5 mAb epitope
1
N
N
VIRAL PROTEIN
Ensemble, statistics, Viral protein
A
GLU
1
A
GLU
1
5
A
LEU
2
A
LEU
2
-2.33
A
LEU
2
A
LEU
2
5
A
LEU
3
A
LEU
3
-29.47
A
TRP
8
A
TRP
8
5
A
ALA
9
A
ALA
9
-26.51
A
TRP
12
A
TRP
12
5
A
ASN
13
A
ASN
13
2.98
A
TRP
12
A
TRP
12
6
A
ASN
13
A
ASN
13
-10.71
A
GLU
1
A
GLU
1
7
A
LEU
2
A
LEU
2
-11.32
A
GLU
1
A
GLU
1
14
A
LEU
2
A
LEU
2
4.72
A
LEU
2
A
LEU
2
14
A
LEU
3
A
LEU
3
-2.80
A
LEU
11
A
LEU
11
17
A
TRP
12
A
TRP
12
9.49
A
GLU
1
A
GLU
1
22
A
LEU
2
A
LEU
2
0.17
A
LEU
2
A
LEU
2
22
A
LEU
3
A
LEU
3
22.40
A
TRP
12
A
TRP
12
22
A
ASN
13
A
ASN
13
-12.31
A
LEU
5
A
LEU
5
30
A
ASP
6
A
ASP
6
4.22
A
GLU
4
A
GLU
4
32
A
LEU
5
A
LEU
5
27.92
A
GLU
4
A
GLU
4
34
A
LEU
5
A
LEU
5
-12.66
A
GLU
1
A
GLU
1
35
A
LEU
2
A
LEU
2
0.75
A
LEU
2
A
LEU
2
35
A
LEU
3
A
LEU
3
9.69
A
GLU
1
A
GLU
1
39
A
LEU
2
A
LEU
2
-12.44
A
LEU
2
A
LEU
2
39
A
LEU
3
A
LEU
3
0.00
A
GLU
1
A
GLU
1
42
A
LEU
2
A
LEU
2
4.87
A
GLU
1
A
GLU
1
43
A
LEU
2
A
LEU
2
1.11
A
LEU
2
A
LEU
2
43
A
LEU
3
A
LEU
3
21.58
A
GLU
4
A
GLU
4
44
A
LEU
5
A
LEU
5
-28.20
A
LEU
2
A
LEU
2
48
A
LEU
3
A
LEU
3
-2.16
A
GLU
1
A
GLU
1
51
A
LEU
2
A
LEU
2
-4.71
A
LEU
2
A
LEU
2
51
A
LEU
3
A
LEU
3
21.97
A
GLU
4
A
GLU
4
52
A
LEU
5
A
LEU
5
17.95
A
GLU
4
A
GLU
4
53
A
LEU
5
A
LEU
5
-13.55
A
GLU
1
A
GLU
1
54
A
LEU
2
A
LEU
2
0.92
A
LEU
2
A
LEU
2
54
A
LEU
3
A
LEU
3
1.15
A
ASP
6
A
ASP
6
54
A
LYS
7
A
LYS
7
4.13
A
TRP
12
A
TRP
12
55
A
ASN
13
A
ASN
13
-29.53
A
LEU
11
A
LEU
11
57
A
TRP
12
A
TRP
12
17.09
A
GLU
4
A
GLU
4
59
A
LEU
5
A
LEU
5
-6.98
A
LEU
2
A
LEU
2
60
A
LEU
3
A
LEU
3
-10.52
A
LEU
2
A
LEU
2
66
A
LEU
3
A
LEU
3
-3.25
A
TRP
12
A
TRP
12
66
A
ASN
13
A
ASN
13
-1.62
A
GLU
1
A
GLU
1
67
A
LEU
2
A
LEU
2
0.31
A
LEU
2
A
LEU
2
67
A
LEU
3
A
LEU
3
8.80
A
LEU
2
A
LEU
2
72
A
LEU
3
A
LEU
3
8.23
A
GLU
1
A
GLU
1
73
A
LEU
2
A
LEU
2
-1.97
A
GLU
1
A
GLU
1
75
A
LEU
2
A
LEU
2
-1.36
A
LEU
2
A
LEU
2
75
A
LEU
3
A
LEU
3
13.53
A
GLU
1
A
GLU
1
76
A
LEU
2
A
LEU
2
-0.97
A
LEU
2
A
LEU
2
76
A
LEU
3
A
LEU
3
14.07
A
LEU
11
A
LEU
11
77
A
TRP
12
A
TRP
12
2.34
ENV_HV1H2
UNP
1
659
P04578
ELLELDKWASLWN
659
671
1MZI
1
13
P04578
A
1
1
13