0.006410
0.003701
0.000000
0.000000
0.007401
0.000000
0.000000
0.000000
0.011058
0.00000
0.00000
0.00000
Nikulin, A.
Eliseikina, I.
Tishchenko, S.
Nevskaya, N.
Davydova, N.
Platonova, O.
Piendl, W.
Selmer, M.
Liljas, A.
Zimmermann, R.
Garber, M.
Nikonov, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
156.010
156.010
90.429
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
104
108
10.1038/nsb886
12514741
Structure of the L1 protuberance in the ribosome.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-04-28
MARRESEARCH
Double crystal focusing monochromator
MAD
M
x-ray
1
0.9762
1.0
0.9330
1.0
BW7A
EMBL/DESY, Hamburg
0.9762,0.9330
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7A
17836.684
fragment of 23S rRNA
1
syn
polymer
24690.396
50s ribosomal protein L1P
1
man
polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
18.015
water
94
nat
water
no
no
GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC
GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC
B
polyribonucleotide
no
yes
MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGID(MSE)KKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYA
KKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQES(MSE)ALAGRILGPALGPRGKFPTPLPNTADISEYINRFK
RSVLVKTKDQPQVQVFIGTED(MSE)KPEDLAENAIAVLNAIENKAKVETNLRNIYVKTT(MSE)GKAVKVKR
MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKAS
PKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTK
DQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Escherichia
sample
AUTHOR STATES TO AVOID THE POTENTIAL MISINCORPORATION OF LYSINE INSTEAD OF ARGININE, THE HOST STRAIN WAS COTRANSFORMED WITH PUBS520, A PLASMID CARRYING THE GENE FOR TRNA(ARG)AGA-AGG.
2285
Sulfolobus acidocaldarius
562
Escherichia coli
B834(DE3)
plasmid
pSacL1.4
1
3.78
67.20
VAPOR DIFFUSION, HANGING DROP
8.5
PEG400, Tris HCl, KCl, MgCl2, ph 8.5, VAPOR DIFFUSION, HANGING DROP at 277K
277
PEG 400
1
Tris HCl
1
KCl
1
MgCl2
1
PEG 400
2
KCl
2
MgCl2
2
-18.966
1
19
B
1
B
55
6.218
B_G1:C55_B
1
-15.755
-0.986
-0.636
-0.061
-5.189
1
19
B
2
B
54
-3.386
B_G2:C54_B
2
-6.253
-0.375
0.152
-0.395
-0.174
1
19
B
3
B
53
-0.430
B_G3:C53_B
3
-6.586
-0.507
0.037
-0.349
1.105
1
20
B
4
B
52
8.089
B_A4:U52_B
4
-18.313
0.088
0.120
-0.367
-6.410
1
16
B
5
B
51
16.271
B_U5:U51_B
5
-17.284
2.373
0.495
-1.836
-5.157
1
19
B
6
B
50
2.147
B_G6:C50_B
6
-6.204
-0.408
-0.164
-0.301
-7.520
1
19
B
16
B
49
1.878
B_G16:C49_B
7
-4.779
-0.293
0.154
-0.057
-12.522
1
19
B
17
B
48
2.127
B_G17:C48_B
8
-11.523
0.002
0.004
-0.219
-5.671
1
20
B
18
B
47
3.923
B_U18:A47_B
9
-10.320
-0.245
0.383
-0.135
1.322
1
19
B
19
B
46
4.012
B_G19:C46_B
10
-9.431
-0.337
0.128
-0.161
-4.447
1
19
B
20
B
45
4.386
B_G20:C45_B
11
-20.143
-0.030
-0.171
-0.256
-12.814
10
11
B
21
B
44
-8.883
B_G21:A44_B
12
-7.673
6.801
0.082
-4.524
50.850
6
B
22
B
33
153.344
B_A22:G33_B
13
-9.092
2.516
-1.802
7.089
-9.149
1
19
B
23
B
32
6.776
B_G23:C32_B
14
-4.859
-0.676
-0.383
-0.117
-23.679
B
8
B
40
-159.611
B_G8:A40_B
15
-0.863
-3.153
-0.649
5.517
-21.390
B
9
B
41
-162.931
B_U9:A41_B
16
4.494
-0.246
-0.540
4.141
16.345
6
10
B
11
B
42
-75.508
B_G11:A42_B
17
7.377
2.966
-0.209
-4.166
-0.434
1
20
B
13
B
43
0.162
B_A13:U43_B
18
-8.758
-0.453
0.128
-0.107
-20.707
6
10
B
15
B
39
68.759
B_A15:G39_B
19
-3.298
-3.335
-0.058
3.825
-5.922
1
19
B
24
B
31
2.200
B_C24:G31_B
20
-6.675
0.271
-0.218
-0.184
3.113
1
19
B
25
B
30
1.107
B_C25:G30_B
21
8.027
0.536
-0.177
-0.183
15.932
B
26
B
29
-9.253
B_G26:A29_B
22
-1.942
6.821
1.039
-5.289
2.759
41.455
B
B
1
2
12.652
B
B
55
54
2.953
8.784
-0.721
-1.055
BB_G1G2:C54C55_BB
1
-11.412
16.437
38.976
-2.337
-0.080
2.488
31.768
B
B
2
3
14.719
B
B
54
53
3.038
7.970
0.119
-1.878
BB_G2G3:C53C54_BB
2
1.833
-3.386
30.723
-4.686
0.071
2.838
29.964
B
B
3
4
9.026
B
B
53
52
3.112
4.644
1.014
-2.002
BB_G3A4:U52C53_BB
3
2.248
-4.370
29.526
-4.750
-1.535
3.188
47.442
B
B
4
5
7.338
B
B
52
51
3.303
5.890
0.775
-0.882
BB_A4U5:U51U52_BB
4
0.716
-0.891
47.091
-1.571
-0.905
1.143
34.984
B
B
5
6
32.664
B
B
51
50
2.882
18.041
-0.488
-1.658
BB_U5G6:C50U51_BB
5
14.651
-26.527
26.330
-4.688
2.379
2.146
22.582
B
B
6
16
16.888
B
B
50
49
3.179
6.518
-0.129
-3.167
BB_G6G16:C49C50_BB
6
-1.123
2.909
21.603
-10.069
-0.012
2.681
31.557
B
B
16
17
14.769
B
B
49
48
3.307
7.932
0.490
-2.278
BB_G16G17:C48C49_BB
7
3.709
-6.906
30.348
-5.566
-0.258
3.085
32.095
B
B
17
18
-1.991
B
B
48
47
3.064
-1.100
0.160
-1.204
BB_G17U18:A47C48_BB
8
-2.140
3.874
32.007
-1.991
-0.652
1.883
31.390
B
B
18
19
23.794
B
B
47
46
2.743
12.528
-0.860
-1.731
BB_U18G19:C46A47_BB
9
-1.370
2.602
28.807
-4.939
1.400
3.216
34.170
B
B
19
20
10.355
B
B
46
45
3.541
6.054
0.186
-1.593
BB_G19G20:C45C46_BB
10
0.573
-0.980
33.640
-3.708
-0.222
3.578
68.684
B
B
20
21
10.058
B
B
45
44
3.725
11.294
-0.122
-0.577
BB_G20G21:A44C45_BB
11
6.525
-5.811
67.584
-0.984
0.381
5.146
-98.879
B
B
21
22
-23.821
B
B
44
33
4.278
35.738
-4.225
-3.663
BB_G21A22:G33A44_BB
12
0.709
0.472
-93.808
1.538
-2.763
3.422
156.569
B
B
22
23
-64.140
B
B
33
32
3.102
-120.528
-2.165
-3.576
BB_A22G23:C32G33_BB
13
83.452
-44.410
90.082
-0.727
1.867
3.338
48.145
B
B
8
9
7.014
B
B
40
41
3.423
5.709
-0.319
-0.440
BB_G8U9:A41A40_BB
14
1.878
-2.307
47.791
-1.004
0.543
6.137
59.663
B
B
9
11
6.411
B
B
41
42
6.347
6.350
0.646
-2.170
BB_U9G11:A42A41_BB
15
8.570
-8.652
58.789
-2.793
0.177
1.004
-170.875
B
B
11
13
-46.950
B
B
42
43
-1.584
90.705
-3.318
1.924
BB_G11A13:U43A42_BB
16
143.848
74.458
-46.740
-0.863
-1.826
2.745
31.831
B
B
24
25
13.214
B
B
31
30
3.149
7.186
-0.390
-1.544
BB_C24C25:G30G31_BB
17
-1.258
2.313
31.005
-4.014
0.502
2.677
51.548
B
B
25
26
14.201
B
B
30
29
2.905
12.245
-1.416
-0.883
BB_C25G26:A29G30_BB
18
-1.655
1.919
50.144
-1.738
1.531
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-01-21
1
1
2008-04-28
1
2
2011-07-13
ribosomal protein L1 from Thermus thermophilus
ribosomal protein L1 from Methanococcus jannaschii
ribosomal protein L1 from Methanococcus thermolithotrophicus
Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution
Crystal Structure Of The Ribosome At 5.5 A Resolution
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Ribosome
RCSB
Y
RCSB
2002-10-09
REL
REL
MG
MAGNESIUM ION
HOH
water
Synthesis of the RNA fragment from the plasmid pDD55; sequence from cell-free(in vitro) system without living organism.
sample
MG
1
3
MG
MG
56
B
MG
2
3
MG
MG
57
B
MG
3
3
MG
MG
58
B
HOH
4
4
HOH
HOH
59
B
HOH
5
4
HOH
HOH
60
B
HOH
6
4
HOH
HOH
61
B
HOH
7
4
HOH
HOH
62
B
HOH
8
4
HOH
HOH
63
B
HOH
9
4
HOH
HOH
64
B
HOH
10
4
HOH
HOH
65
B
HOH
11
4
HOH
HOH
66
B
HOH
12
4
HOH
HOH
67
B
HOH
17
4
HOH
HOH
68
B
HOH
18
4
HOH
HOH
69
B
HOH
19
4
HOH
HOH
70
B
HOH
20
4
HOH
HOH
71
B
HOH
21
4
HOH
HOH
72
B
HOH
24
4
HOH
HOH
73
B
HOH
27
4
HOH
HOH
74
B
HOH
29
4
HOH
HOH
75
B
HOH
30
4
HOH
HOH
76
B
HOH
31
4
HOH
HOH
77
B
HOH
32
4
HOH
HOH
78
B
HOH
33
4
HOH
HOH
79
B
HOH
34
4
HOH
HOH
80
B
HOH
35
4
HOH
HOH
81
B
HOH
38
4
HOH
HOH
82
B
HOH
42
4
HOH
HOH
83
B
HOH
43
4
HOH
HOH
84
B
HOH
44
4
HOH
HOH
85
B
HOH
47
4
HOH
HOH
86
B
HOH
49
4
HOH
HOH
87
B
HOH
53
4
HOH
HOH
88
B
HOH
58
4
HOH
HOH
89
B
HOH
61
4
HOH
HOH
90
B
HOH
62
4
HOH
HOH
91
B
HOH
64
4
HOH
HOH
92
B
HOH
65
4
HOH
HOH
93
B
HOH
66
4
HOH
HOH
94
B
HOH
68
4
HOH
HOH
95
B
HOH
73
4
HOH
HOH
96
B
HOH
83
4
HOH
HOH
97
B
HOH
84
4
HOH
HOH
98
B
HOH
85
4
HOH
HOH
99
B
HOH
86
4
HOH
HOH
100
B
HOH
87
4
HOH
HOH
101
B
HOH
88
4
HOH
HOH
102
B
HOH
89
4
HOH
HOH
103
B
HOH
95
4
HOH
HOH
104
B
HOH
96
4
HOH
HOH
105
B
HOH
13
4
HOH
HOH
218
A
HOH
14
4
HOH
HOH
219
A
HOH
15
4
HOH
HOH
220
A
HOH
16
4
HOH
HOH
221
A
HOH
22
4
HOH
HOH
222
A
HOH
23
4
HOH
HOH
223
A
HOH
25
4
HOH
HOH
224
A
HOH
26
4
HOH
HOH
225
A
HOH
28
4
HOH
HOH
226
A
HOH
36
4
HOH
HOH
227
A
HOH
37
4
HOH
HOH
228
A
HOH
39
4
HOH
HOH
229
A
HOH
40
4
HOH
HOH
230
A
HOH
41
4
HOH
HOH
231
A
HOH
45
4
HOH
HOH
232
A
HOH
46
4
HOH
HOH
233
A
HOH
48
4
HOH
HOH
234
A
HOH
50
4
HOH
HOH
235
A
HOH
51
4
HOH
HOH
236
A
HOH
52
4
HOH
HOH
237
A
HOH
54
4
HOH
HOH
238
A
HOH
55
4
HOH
HOH
239
A
HOH
56
4
HOH
HOH
240
A
HOH
57
4
HOH
HOH
241
A
HOH
59
4
HOH
HOH
242
A
HOH
60
4
HOH
HOH
243
A
HOH
63
4
HOH
HOH
244
A
HOH
67
4
HOH
HOH
245
A
HOH
69
4
HOH
HOH
246
A
HOH
70
4
HOH
HOH
247
A
HOH
71
4
HOH
HOH
248
A
HOH
72
4
HOH
HOH
249
A
HOH
74
4
HOH
HOH
250
A
HOH
75
4
HOH
HOH
251
A
HOH
76
4
HOH
HOH
252
A
HOH
77
4
HOH
HOH
253
A
HOH
78
4
HOH
HOH
254
A
HOH
79
4
HOH
HOH
255
A
HOH
80
4
HOH
HOH
256
A
HOH
81
4
HOH
HOH
257
A
HOH
82
4
HOH
HOH
258
A
HOH
90
4
HOH
HOH
259
A
HOH
91
4
HOH
HOH
260
A
HOH
92
4
HOH
HOH
261
A
HOH
93
4
HOH
HOH
262
A
HOH
94
4
HOH
HOH
263
A
HOH
97
4
HOH
HOH
264
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
G
3
n
3
G
3
B
A
4
n
4
A
4
B
U
5
n
5
U
5
B
G
6
n
6
G
6
B
C
7
n
7
C
7
B
G
8
n
8
G
8
B
U
9
n
9
U
9
B
A
10
n
10
A
10
B
G
11
n
11
G
11
B
G
12
n
12
G
12
B
A
13
n
13
A
13
B
U
14
n
14
U
14
B
A
15
n
15
A
15
B
G
16
n
16
G
16
B
G
17
n
17
G
17
B
U
18
n
18
U
18
B
G
19
n
19
G
19
B
G
20
n
20
G
20
B
G
21
n
21
G
21
B
A
22
n
22
A
22
B
G
23
n
23
G
23
B
C
24
n
24
C
24
B
C
25
n
25
C
25
B
G
26
n
26
G
26
B
C
27
n
27
C
27
B
A
28
n
28
A
28
B
A
29
n
29
A
29
B
G
30
n
30
G
30
B
G
31
n
31
G
31
B
C
32
n
32
C
32
B
G
33
n
33
G
33
B
C
34
n
34
C
34
B
C
35
n
35
C
35
B
G
36
n
36
G
36
B
G
37
n
37
G
37
B
U
38
n
38
U
38
B
G
39
n
39
G
39
B
A
40
n
40
A
40
B
A
41
n
41
A
41
B
A
42
n
42
A
42
B
U
43
n
43
U
43
B
A
44
n
44
A
44
B
C
45
n
45
C
45
B
C
46
n
46
C
46
B
A
47
n
47
A
47
B
C
48
n
48
C
48
B
C
49
n
49
C
49
B
C
50
n
50
C
50
B
U
51
n
51
U
51
B
U
52
n
52
U
52
B
C
53
n
53
C
53
B
C
54
n
54
C
54
B
C
55
n
55
C
55
B
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ALA
3
n
3
ALA
3
A
ASP
4
n
4
ASP
4
A
LYS
5
n
5
LYS
5
A
GLU
6
n
6
GLU
6
A
SER
7
n
7
SER
7
A
LEU
8
n
8
LEU
8
A
ILE
9
n
9
ILE
9
A
GLU
10
n
10
GLU
10
A
ALA
11
n
11
ALA
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
LEU
14
n
14
LEU
14
A
ALA
15
n
15
ALA
15
A
LEU
16
n
16
LEU
16
A
SER
17
n
17
SER
17
A
THR
18
n
18
THR
18
A
GLU
19
n
19
GLU
19
A
TYR
20
n
20
TYR
20
A
ASN
21
n
21
ASN
21
A
VAL
22
n
22
VAL
22
A
LYS
23
n
23
LYS
23
A
ARG
24
n
24
ARG
24
A
ASN
25
n
25
ASN
25
A
PHE
26
n
26
PHE
26
A
THR
27
n
27
THR
27
A
GLN
28
n
28
GLN
28
A
SER
29
n
29
SER
29
A
VAL
30
n
30
VAL
30
A
GLU
31
n
31
GLU
31
A
ILE
32
n
32
ILE
32
A
ILE
33
n
33
ILE
33
A
LEU
34
n
34
LEU
34
A
THR
35
n
35
THR
35
A
PHE
36
n
36
PHE
36
A
LYS
37
n
37
LYS
37
A
GLY
38
n
38
GLY
38
A
ILE
39
n
39
ILE
39
A
ASP
40
n
40
ASP
40
A
MSE
41
n
41
MSE
41
A
LYS
42
n
42
LYS
42
A
LYS
43
n
43
LYS
43
A
GLY
44
n
44
GLY
44
A
ASP
45
n
45
ASP
45
A
LEU
46
n
46
LEU
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
ARG
49
n
49
ARG
49
A
GLU
50
n
50
GLU
50
A
ILE
51
n
51
ILE
51
A
VAL
52
n
52
VAL
52
A
PRO
53
n
53
PRO
53
A
LEU
54
n
54
LEU
54
A
PRO
55
n
55
PRO
55
A
LYS
56
n
56
LYS
56
A
GLN
57
n
57
GLN
57
A
PRO
58
n
58
PRO
58
A
SER
59
n
59
SER
59
A
LYS
60
n
60
LYS
60
A
ALA
61
n
61
ALA
61
A
LYS
62
n
62
LYS
62
A
ARG
63
n
63
ARG
63
A
VAL
64
n
64
VAL
64
A
LEU
65
n
65
LEU
65
A
VAL
66
n
66
VAL
66
A
VAL
67
n
67
VAL
67
A
PRO
68
n
68
PRO
68
A
SER
69
n
69
SER
69
A
SER
70
n
70
SER
70
A
GLU
71
n
71
GLU
71
A
GLN
72
n
72
GLN
72
A
LEU
73
n
73
LEU
73
A
GLU
74
n
74
GLU
74
A
TYR
75
n
75
TYR
75
A
ALA
76
n
76
ALA
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
ALA
79
n
79
ALA
79
A
SER
80
n
80
SER
80
A
PRO
81
n
81
PRO
81
A
LYS
82
n
82
LYS
82
A
VAL
83
n
83
VAL
83
A
VAL
84
n
84
VAL
84
A
ILE
85
n
85
ILE
85
A
THR
86
n
86
THR
86
A
ARG
87
n
87
ARG
87
A
GLU
88
n
88
GLU
88
A
GLU
89
n
89
GLU
89
A
LEU
90
n
90
LEU
90
A
GLN
91
n
91
GLN
91
A
LYS
92
n
92
LYS
92
A
LEU
93
n
93
LEU
93
A
GLN
94
n
94
GLN
94
A
GLY
95
n
95
GLY
95
A
GLN
96
n
96
GLN
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
PRO
99
n
99
PRO
99
A
VAL
100
n
100
VAL
100
A
LYS
101
n
101
LYS
101
A
LYS
102
n
102
LYS
102
A
LEU
103
n
103
LEU
103
A
ALA
104
n
104
ALA
104
A
ARG
105
n
105
ARG
105
A
GLN
106
n
106
GLN
106
A
ASN
107
n
107
ASN
107
A
GLU
108
n
108
GLU
108
A
TRP
109
n
109
TRP
109
A
PHE
110
n
110
PHE
110
A
LEU
111
n
111
LEU
111
A
ILE
112
n
112
ILE
112
A
ASN
113
n
113
ASN
113
A
GLN
114
n
114
GLN
114
A
GLU
115
n
115
GLU
115
A
SER
116
n
116
SER
116
A
MSE
117
n
117
MSE
117
A
ALA
118
n
118
ALA
118
A
LEU
119
n
119
LEU
119
A
ALA
120
n
120
ALA
120
A
GLY
121
n
121
GLY
121
A
ARG
122
n
122
ARG
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
PRO
126
n
126
PRO
126
A
ALA
127
n
127
ALA
127
A
LEU
128
n
128
LEU
128
A
GLY
129
n
129
GLY
129
A
PRO
130
n
130
PRO
130
A
ARG
131
n
131
ARG
131
A
GLY
132
n
132
GLY
132
A
LYS
133
n
133
LYS
133
A
PHE
134
n
134
PHE
134
A
PRO
135
n
135
PRO
135
A
THR
136
n
136
THR
136
A
PRO
137
n
137
PRO
137
A
LEU
138
n
138
LEU
138
A
PRO
139
n
139
PRO
139
A
ASN
140
n
140
ASN
140
A
THR
141
n
141
THR
141
A
ALA
142
n
142
ALA
142
A
ASP
143
n
143
ASP
143
A
ILE
144
n
144
ILE
144
A
SER
145
n
145
SER
145
A
GLU
146
n
146
GLU
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
ASN
149
n
149
ASN
149
A
ARG
150
n
150
ARG
150
A
PHE
151
n
151
PHE
151
A
LYS
152
n
152
LYS
152
A
ARG
153
n
153
ARG
153
A
SER
154
n
154
SER
154
A
VAL
155
n
155
VAL
155
A
LEU
156
n
156
LEU
156
A
VAL
157
n
157
VAL
157
A
LYS
158
n
158
LYS
158
A
THR
159
n
159
THR
159
A
LYS
160
n
160
LYS
160
A
ASP
161
n
161
ASP
161
A
GLN
162
n
162
GLN
162
A
PRO
163
n
163
PRO
163
A
GLN
164
n
164
GLN
164
A
VAL
165
n
165
VAL
165
A
GLN
166
n
166
GLN
166
A
VAL
167
n
167
VAL
167
A
PHE
168
n
168
PHE
168
A
ILE
169
n
169
ILE
169
A
GLY
170
n
170
GLY
170
A
THR
171
n
171
THR
171
A
GLU
172
n
172
GLU
172
A
ASP
173
n
173
ASP
173
A
MSE
174
n
174
MSE
174
A
LYS
175
n
175
LYS
175
A
PRO
176
n
176
PRO
176
A
GLU
177
n
177
GLU
177
A
ASP
178
n
178
ASP
178
A
LEU
179
n
179
LEU
179
A
ALA
180
n
180
ALA
180
A
GLU
181
n
181
GLU
181
A
ASN
182
n
182
ASN
182
A
ALA
183
n
183
ALA
183
A
ILE
184
n
184
ILE
184
A
ALA
185
n
185
ALA
185
A
VAL
186
n
186
VAL
186
A
LEU
187
n
187
LEU
187
A
ASN
188
n
188
ASN
188
A
ALA
189
n
189
ALA
189
A
ILE
190
n
190
ILE
190
A
GLU
191
n
191
GLU
191
A
ASN
192
n
192
ASN
192
A
LYS
193
n
193
LYS
193
A
ALA
194
n
194
ALA
194
A
LYS
195
n
195
LYS
195
A
VAL
196
n
196
VAL
196
A
GLU
197
n
197
GLU
197
A
THR
198
n
198
THR
198
A
ASN
199
n
199
ASN
199
A
LEU
200
n
200
LEU
200
A
ARG
201
n
201
ARG
201
A
ASN
202
n
202
ASN
202
A
ILE
203
n
203
ILE
203
A
TYR
204
n
204
TYR
204
A
VAL
205
n
205
VAL
205
A
LYS
206
n
206
LYS
206
A
THR
207
n
207
THR
207
A
THR
208
n
208
THR
208
A
MSE
209
n
209
MSE
209
A
GLY
210
n
210
GLY
210
A
LYS
211
n
211
LYS
211
A
ALA
212
n
212
ALA
212
A
VAL
213
n
213
VAL
213
A
LYS
214
n
214
LYS
214
A
VAL
215
n
215
VAL
215
A
LYS
216
n
216
LYS
216
A
ARG
217
n
217
ARG
217
A
author_defined_assembly
2
dimeric
B
G
21
A
O6
G
21
1_555
B
MG
57
D
MG
MG
1_555
B
HOH
99
F
O
HOH
1_555
74.1
B
G
21
A
O6
G
21
1_555
B
MG
57
D
MG
MG
1_555
B
HOH
97
F
O
HOH
1_555
78.9
B
HOH
99
F
O
HOH
1_555
B
MG
57
D
MG
MG
1_555
B
HOH
97
F
O
HOH
1_555
70.7
A
MSE
41
SELENOMETHIONINE
B
MSE
41
MET
A
MSE
117
SELENOMETHIONINE
B
MSE
117
MET
A
MSE
174
SELENOMETHIONINE
B
MSE
174
MET
A
MSE
209
SELENOMETHIONINE
B
MSE
209
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
170
B
O
GLY
170
A
N
VAL
30
B
N
VAL
30
A
N
ILE
33
B
N
ILE
33
A
O
TYR
204
B
O
TYR
204
A
N
VAL
205
B
N
VAL
205
A
O
VAL
213
B
O
VAL
213
A
N
GLU
50
B
N
GLU
50
A
O
VAL
157
B
O
VAL
157
A
O
VAL
83
B
O
VAL
83
A
N
VAL
66
B
N
VAL
66
A
N
VAL
67
B
N
VAL
67
A
O
LEU
111
B
O
LEU
111
A
N
PHE
110
B
N
PHE
110
A
O
THR
136
B
O
THR
136
1
B
A
13
0.115
SIDE CHAIN
1
B
G
26
0.054
SIDE CHAIN
1
B
G
39
0.060
SIDE CHAIN
1
8.90
1.30
114.00
122.90
B
B
B
N9
C1'
C2'
A
A
A
13
13
13
N
1
B
B
P
OP3
G
G
1
1
-0.084
0.012
1.607
1.523
N
1
A
LYS
42
-64.31
9.63
1
A
ARG
49
-179.58
58.39
1
A
PRO
68
-77.80
-133.11
1
A
SER
145
-27.79
-54.52
1
A
LYS
160
-122.19
-69.13
1
A
ASP
161
-147.92
17.07
1
A
ALA
194
-171.86
135.50
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
ION.PARAM
WATER.TOP
WATER_REP.PARAM
ION.TOP
51.9
6.16
5.66
0.00
6.16
0.00
-12.33
0.266
0.009
0.219
0.259
0.219
2.65
25.00
952
19127
19127
5.0
99.1
RANDOM
1263310.50
1263310.50
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MAD
Engh & Huber
FLAT MODEL
32.521
0.32442
0.44
0.35
5.00
0.52
0.42
2.65
25.00
94
3002
3
1185
1720
0.006
1.3
20.6
1.39
1.49
1.50
2.59
2.00
1.75
2.00
2.70
2.50
0.421
0.043
0.338
2.74
94
1740
10
5.1
97.6
70.0
2.65
25.00
1MZP
22839
22839
0
0
0.057
1
7.8
99.1
0.376
2.65
2.70
97.2
data scaling
XDS
data reduction
XDS
refinement
CNS
phasing
CNS
50s ribosomal protein L1P/RNA
Structure of the L1 protuberance in the ribosome
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
ASP
4
B
ASP
4
HELX_P
A
SER
17
B
SER
17
1
1
14
A
ASP
40
B
ASP
40
HELX_P
A
GLY
44
B
GLY
44
5
2
5
A
SER
69
B
SER
69
HELX_P
A
ALA
79
B
ALA
79
1
3
11
A
THR
86
B
THR
86
HELX_P
A
GLN
94
B
GLN
94
1
4
9
A
GLN
96
B
GLN
96
HELX_P
A
GLN
106
B
GLN
106
1
5
11
A
SER
116
B
SER
116
HELX_P
A
LEU
124
B
LEU
124
1
6
9
A
LEU
124
B
LEU
124
HELX_P
A
GLY
129
B
GLY
129
1
7
6
A
PRO
130
B
PRO
130
HELX_P
A
GLY
132
B
GLY
132
5
8
3
A
ILE
144
B
ILE
144
HELX_P
A
ARG
153
B
ARG
153
1
9
10
A
LYS
175
B
LYS
175
HELX_P
A
ALA
194
B
ALA
194
1
10
20
covale
1.330
A
ASP
40
B
C
ASP
40
1_555
A
MSE
41
B
N
MSE
41
1_555
covale
1.332
A
MSE
41
B
C
MSE
41
1_555
A
LYS
42
B
N
LYS
42
1_555
covale
1.326
A
SER
116
B
C
SER
116
1_555
A
MSE
117
B
N
MSE
117
1_555
covale
1.331
A
MSE
117
B
C
MSE
117
1_555
A
ALA
118
B
N
ALA
118
1_555
covale
1.327
A
ASP
173
B
C
ASP
173
1_555
A
MSE
174
B
N
MSE
174
1_555
covale
1.331
A
MSE
174
B
C
MSE
174
1_555
A
LYS
175
B
N
LYS
175
1_555
covale
1.327
A
THR
208
B
C
THR
208
1_555
A
MSE
209
B
N
MSE
209
1_555
covale
1.332
A
MSE
209
B
C
MSE
209
1_555
A
GLY
210
B
N
GLY
210
1_555
metalc
2.098
B
MG
56
C
MG
MG
1_555
B
HOH
98
F
O
HOH
1_555
metalc
2.202
B
MG
57
D
MG
MG
1_555
B
G
21
A
O6
G
21
1_555
metalc
2.179
B
MG
57
D
MG
MG
1_555
B
HOH
99
F
O
HOH
1_555
metalc
2.090
B
MG
57
D
MG
MG
1_555
B
HOH
97
F
O
HOH
1_555
hydrog
WATSON-CRICK
B
G
1
A
N1
G
1
1_555
B
C
55
A
N3
C
55
1_555
hydrog
WATSON-CRICK
B
G
1
A
N2
G
1
1_555
B
C
55
A
O2
C
55
1_555
hydrog
WATSON-CRICK
B
G
1
A
O6
G
1
1_555
B
C
55
A
N4
C
55
1_555
hydrog
WATSON-CRICK
B
G
2
A
N1
G
2
1_555
B
C
54
A
N3
C
54
1_555
hydrog
WATSON-CRICK
B
G
2
A
N2
G
2
1_555
B
C
54
A
O2
C
54
1_555
hydrog
WATSON-CRICK
B
G
2
A
O6
G
2
1_555
B
C
54
A
N4
C
54
1_555
hydrog
WATSON-CRICK
B
G
3
A
N1
G
3
1_555
B
C
53
A
N3
C
53
1_555
hydrog
WATSON-CRICK
B
G
3
A
N2
G
3
1_555
B
C
53
A
O2
C
53
1_555
hydrog
WATSON-CRICK
B
G
3
A
O6
G
3
1_555
B
C
53
A
N4
C
53
1_555
hydrog
WATSON-CRICK
B
A
4
A
N1
A
4
1_555
B
U
52
A
N3
U
52
1_555
hydrog
WATSON-CRICK
B
A
4
A
N6
A
4
1_555
B
U
52
A
O4
U
52
1_555
hydrog
TYPE_16_PAIR
B
U
5
A
N3
U
5
1_555
B
U
51
A
O4
U
51
1_555
hydrog
TYPE_16_PAIR
B
U
5
A
O2
U
5
1_555
B
U
51
A
N3
U
51
1_555
hydrog
WATSON-CRICK
B
G
6
A
N1
G
6
1_555
B
C
50
A
N3
C
50
1_555
hydrog
WATSON-CRICK
B
G
6
A
N2
G
6
1_555
B
C
50
A
O2
C
50
1_555
hydrog
WATSON-CRICK
B
G
6
A
O6
G
6
1_555
B
C
50
A
N4
C
50
1_555
hydrog
G-A MISPAIR
B
G
8
A
O6
G
8
1_555
B
A
40
A
N6
A
40
1_555
hydrog
U-A PAIR
B
U
9
A
O4
U
9
1_555
B
A
41
A
N6
A
41
1_555
hydrog
TYPE_5_PAIR
B
A
10
A
N1
A
10
1_555
B
A
15
A
N6
A
15
1_555
hydrog
TYPE_5_PAIR
B
A
10
A
N6
A
10
1_555
B
A
15
A
N7
A
15
1_555
hydrog
TYPE_10_PAIR
B
G
11
A
N2
G
11
1_555
B
A
42
A
N1
A
42
1_555
hydrog
TYPE_10_PAIR
B
G
11
A
N3
G
11
1_555
B
A
42
A
N6
A
42
1_555
hydrog
WATSON-CRICK
B
A
13
A
N1
A
13
1_555
B
U
43
A
N3
U
43
1_555
hydrog
WATSON-CRICK
B
A
13
A
N6
A
13
1_555
B
U
43
A
O4
U
43
1_555
hydrog
TYPE_10_PAIR
B
A
15
A
N1
A
15
1_555
B
G
39
A
N2
G
39
1_555
hydrog
TYPE_10_PAIR
B
A
15
A
N6
A
15
1_555
B
G
39
A
N3
G
39
1_555
hydrog
WATSON-CRICK
B
G
16
A
N1
G
16
1_555
B
C
49
A
N3
C
49
1_555
hydrog
WATSON-CRICK
B
G
16
A
N2
G
16
1_555
B
C
49
A
O2
C
49
1_555
hydrog
WATSON-CRICK
B
G
16
A
O6
G
16
1_555
B
C
49
A
N4
C
49
1_555
hydrog
WATSON-CRICK
B
G
17
A
N1
G
17
1_555
B
C
48
A
N3
C
48
1_555
hydrog
WATSON-CRICK
B
G
17
A
N2
G
17
1_555
B
C
48
A
O2
C
48
1_555
hydrog
WATSON-CRICK
B
G
17
A
O6
G
17
1_555
B
C
48
A
N4
C
48
1_555
hydrog
WATSON-CRICK
B
U
18
A
N3
U
18
1_555
B
A
47
A
N1
A
47
1_555
hydrog
WATSON-CRICK
B
U
18
A
O4
U
18
1_555
B
A
47
A
N6
A
47
1_555
hydrog
WATSON-CRICK
B
G
19
A
N1
G
19
1_555
B
C
46
A
N3
C
46
1_555
hydrog
WATSON-CRICK
B
G
19
A
N2
G
19
1_555
B
C
46
A
O2
C
46
1_555
hydrog
WATSON-CRICK
B
G
19
A
O6
G
19
1_555
B
C
46
A
N4
C
46
1_555
hydrog
WATSON-CRICK
B
G
20
A
N1
G
20
1_555
B
C
45
A
N3
C
45
1_555
hydrog
WATSON-CRICK
B
G
20
A
N2
G
20
1_555
B
C
45
A
O2
C
45
1_555
hydrog
WATSON-CRICK
B
G
20
A
O6
G
20
1_555
B
C
45
A
N4
C
45
1_555
hydrog
TYPE_11_PAIR
B
G
21
A
N2
G
21
1_555
B
A
44
A
N7
A
44
1_555
hydrog
TYPE_11_PAIR
B
G
21
A
N3
G
21
1_555
B
A
44
A
N6
A
44
1_555
hydrog
A-G MISPAIR
B
A
22
A
N3
A
22
1_555
B
G
33
A
N2
G
33
1_555
hydrog
WATSON-CRICK
B
G
23
A
N1
G
23
1_555
B
C
32
A
N3
C
32
1_555
hydrog
WATSON-CRICK
B
G
23
A
N2
G
23
1_555
B
C
32
A
O2
C
32
1_555
hydrog
WATSON-CRICK
B
G
23
A
O6
G
23
1_555
B
C
32
A
N4
C
32
1_555
hydrog
G-A MISPAIR
B
G
23
A
N2
G
23
1_555
B
A
44
A
N3
A
44
1_555
hydrog
WATSON-CRICK
B
C
24
A
N3
C
24
1_555
B
G
31
A
N1
G
31
1_555
hydrog
WATSON-CRICK
B
C
24
A
N4
C
24
1_555
B
G
31
A
O6
G
31
1_555
hydrog
WATSON-CRICK
B
C
24
A
O2
C
24
1_555
B
G
31
A
N2
G
31
1_555
hydrog
WATSON-CRICK
B
C
25
A
N3
C
25
1_555
B
G
30
A
N1
G
30
1_555
hydrog
WATSON-CRICK
B
C
25
A
N4
C
25
1_555
B
G
30
A
O6
G
30
1_555
hydrog
WATSON-CRICK
B
C
25
A
O2
C
25
1_555
B
G
30
A
N2
G
30
1_555
hydrog
G-A MISPAIR
B
G
26
A
N2
G
26
1_555
B
A
29
A
N7
A
29
1_555
hydrog
G-U MISPAIR
B
G
37
A
N1
G
37
1_555
B
U
43
A
O4
U
43
1_555
hydrog
REVERSED HOOGSTEEN
B
U
38
A
N3
U
38
1_555
B
A
42
A
N7
A
42
1_555
hydrog
REVERSED HOOGSTEEN
B
U
38
A
O2
U
38
1_555
B
A
42
A
N6
A
42
1_555
RIBOSOME
ribosome, ribosomal protein, RNA-protein complex
RL1_SULAC
UNP
2
5
P35024
LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP
KVVITREELQKLQGQKRPVKKLAIQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVIVKTKD
QPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR
1MZP
PDB
1
1MZP
5
220
1MZP
2
217
P35024
A
1
2
217
1
55
1MZP
1
55
1MZP
B
2
1
55
1
CLONING ARTIFACT
MET
1
1MZP
A
P35024
UNP
1
1
MET
MODIFIED RESIDUE
MSE
41
1MZP
A
P35024
UNP
44
41
1
ILE
CONFLICT
ARG
105
1MZP
A
P35024
UNP
108
105
1
MET
MODIFIED RESIDUE
MSE
117
1MZP
A
P35024
UNP
120
117
1
ILE
CONFLICT
LEU
156
1MZP
A
P35024
UNP
159
156
1
MET
MODIFIED RESIDUE
MSE
174
1MZP
A
P35024
UNP
177
174
1
MET
MODIFIED RESIDUE
MSE
209
1MZP
A
P35024
UNP
212
209
4
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
A
GLN
164
B
GLN
164
A
THR
171
B
THR
171
A
SER
29
B
SER
29
A
PHE
36
B
PHE
36
A
LEU
200
B
LEU
200
A
THR
207
B
THR
207
A
VAL
213
B
VAL
213
A
LYS
214
B
LYS
214
A
ARG
49
B
ARG
49
A
PRO
53
B
PRO
53
A
SER
154
B
SER
154
A
LYS
158
B
LYS
158
A
VAL
83
B
VAL
83
A
VAL
84
B
VAL
84
A
VAL
64
B
VAL
64
A
VAL
67
B
VAL
67
A
TRP
109
B
TRP
109
A
ILE
112
B
ILE
112
A
PRO
135
B
PRO
135
A
PRO
137
B
PRO
137
BINDING SITE FOR RESIDUE MG B 56
Software
1
BINDING SITE FOR RESIDUE MG B 57
Software
4
B
HOH
98
F
HOH
1
1_555
A
ARG
105
B
ARG
105
4
1_555
B
G
21
A
G
21
4
1_555
B
HOH
97
F
HOH
4
1_555
B
HOH
99
F
HOH
4
1_555
179
P 65 2 2