0.006410 0.003701 0.000000 0.000000 0.007401 0.000000 0.000000 0.000000 0.011058 0.00000 0.00000 0.00000 Nikulin, A. Eliseikina, I. Tishchenko, S. Nevskaya, N. Davydova, N. Platonova, O. Piendl, W. Selmer, M. Liljas, A. Zimmermann, R. Garber, M. Nikonov, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 156.010 156.010 90.429 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 104 108 10.1038/nsb886 12514741 Structure of the L1 protuberance in the ribosome. 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-04-28 MARRESEARCH Double crystal focusing monochromator MAD M x-ray 1 0.9762 1.0 0.9330 1.0 BW7A EMBL/DESY, Hamburg 0.9762,0.9330 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 17836.684 fragment of 23S rRNA 1 syn polymer 24690.396 50s ribosomal protein L1P 1 man polymer 24.305 MAGNESIUM ION 3 syn non-polymer 18.015 water 94 nat water no no GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC B polyribonucleotide no yes MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGID(MSE)KKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYA KKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQES(MSE)ALAGRILGPALGPRGKFPTPLPNTADISEYINRFK RSVLVKTKDQPQVQVFIGTED(MSE)KPEDLAENAIAVLNAIENKAKVETNLRNIYVKTT(MSE)GKAVKVKR MLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKAS PKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTK DQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sulfolobus Escherichia sample AUTHOR STATES TO AVOID THE POTENTIAL MISINCORPORATION OF LYSINE INSTEAD OF ARGININE, THE HOST STRAIN WAS COTRANSFORMED WITH PUBS520, A PLASMID CARRYING THE GENE FOR TRNA(ARG)AGA-AGG. 2285 Sulfolobus acidocaldarius 562 Escherichia coli B834(DE3) plasmid pSacL1.4 1 3.78 67.20 VAPOR DIFFUSION, HANGING DROP 8.5 PEG400, Tris HCl, KCl, MgCl2, ph 8.5, VAPOR DIFFUSION, HANGING DROP at 277K 277 PEG 400 1 Tris HCl 1 KCl 1 MgCl2 1 PEG 400 2 KCl 2 MgCl2 2 -18.966 1 19 B 1 B 55 6.218 B_G1:C55_B 1 -15.755 -0.986 -0.636 -0.061 -5.189 1 19 B 2 B 54 -3.386 B_G2:C54_B 2 -6.253 -0.375 0.152 -0.395 -0.174 1 19 B 3 B 53 -0.430 B_G3:C53_B 3 -6.586 -0.507 0.037 -0.349 1.105 1 20 B 4 B 52 8.089 B_A4:U52_B 4 -18.313 0.088 0.120 -0.367 -6.410 1 16 B 5 B 51 16.271 B_U5:U51_B 5 -17.284 2.373 0.495 -1.836 -5.157 1 19 B 6 B 50 2.147 B_G6:C50_B 6 -6.204 -0.408 -0.164 -0.301 -7.520 1 19 B 16 B 49 1.878 B_G16:C49_B 7 -4.779 -0.293 0.154 -0.057 -12.522 1 19 B 17 B 48 2.127 B_G17:C48_B 8 -11.523 0.002 0.004 -0.219 -5.671 1 20 B 18 B 47 3.923 B_U18:A47_B 9 -10.320 -0.245 0.383 -0.135 1.322 1 19 B 19 B 46 4.012 B_G19:C46_B 10 -9.431 -0.337 0.128 -0.161 -4.447 1 19 B 20 B 45 4.386 B_G20:C45_B 11 -20.143 -0.030 -0.171 -0.256 -12.814 10 11 B 21 B 44 -8.883 B_G21:A44_B 12 -7.673 6.801 0.082 -4.524 50.850 6 B 22 B 33 153.344 B_A22:G33_B 13 -9.092 2.516 -1.802 7.089 -9.149 1 19 B 23 B 32 6.776 B_G23:C32_B 14 -4.859 -0.676 -0.383 -0.117 -23.679 B 8 B 40 -159.611 B_G8:A40_B 15 -0.863 -3.153 -0.649 5.517 -21.390 B 9 B 41 -162.931 B_U9:A41_B 16 4.494 -0.246 -0.540 4.141 16.345 6 10 B 11 B 42 -75.508 B_G11:A42_B 17 7.377 2.966 -0.209 -4.166 -0.434 1 20 B 13 B 43 0.162 B_A13:U43_B 18 -8.758 -0.453 0.128 -0.107 -20.707 6 10 B 15 B 39 68.759 B_A15:G39_B 19 -3.298 -3.335 -0.058 3.825 -5.922 1 19 B 24 B 31 2.200 B_C24:G31_B 20 -6.675 0.271 -0.218 -0.184 3.113 1 19 B 25 B 30 1.107 B_C25:G30_B 21 8.027 0.536 -0.177 -0.183 15.932 B 26 B 29 -9.253 B_G26:A29_B 22 -1.942 6.821 1.039 -5.289 2.759 41.455 B B 1 2 12.652 B B 55 54 2.953 8.784 -0.721 -1.055 BB_G1G2:C54C55_BB 1 -11.412 16.437 38.976 -2.337 -0.080 2.488 31.768 B B 2 3 14.719 B B 54 53 3.038 7.970 0.119 -1.878 BB_G2G3:C53C54_BB 2 1.833 -3.386 30.723 -4.686 0.071 2.838 29.964 B B 3 4 9.026 B B 53 52 3.112 4.644 1.014 -2.002 BB_G3A4:U52C53_BB 3 2.248 -4.370 29.526 -4.750 -1.535 3.188 47.442 B B 4 5 7.338 B B 52 51 3.303 5.890 0.775 -0.882 BB_A4U5:U51U52_BB 4 0.716 -0.891 47.091 -1.571 -0.905 1.143 34.984 B B 5 6 32.664 B B 51 50 2.882 18.041 -0.488 -1.658 BB_U5G6:C50U51_BB 5 14.651 -26.527 26.330 -4.688 2.379 2.146 22.582 B B 6 16 16.888 B B 50 49 3.179 6.518 -0.129 -3.167 BB_G6G16:C49C50_BB 6 -1.123 2.909 21.603 -10.069 -0.012 2.681 31.557 B B 16 17 14.769 B B 49 48 3.307 7.932 0.490 -2.278 BB_G16G17:C48C49_BB 7 3.709 -6.906 30.348 -5.566 -0.258 3.085 32.095 B B 17 18 -1.991 B B 48 47 3.064 -1.100 0.160 -1.204 BB_G17U18:A47C48_BB 8 -2.140 3.874 32.007 -1.991 -0.652 1.883 31.390 B B 18 19 23.794 B B 47 46 2.743 12.528 -0.860 -1.731 BB_U18G19:C46A47_BB 9 -1.370 2.602 28.807 -4.939 1.400 3.216 34.170 B B 19 20 10.355 B B 46 45 3.541 6.054 0.186 -1.593 BB_G19G20:C45C46_BB 10 0.573 -0.980 33.640 -3.708 -0.222 3.578 68.684 B B 20 21 10.058 B B 45 44 3.725 11.294 -0.122 -0.577 BB_G20G21:A44C45_BB 11 6.525 -5.811 67.584 -0.984 0.381 5.146 -98.879 B B 21 22 -23.821 B B 44 33 4.278 35.738 -4.225 -3.663 BB_G21A22:G33A44_BB 12 0.709 0.472 -93.808 1.538 -2.763 3.422 156.569 B B 22 23 -64.140 B B 33 32 3.102 -120.528 -2.165 -3.576 BB_A22G23:C32G33_BB 13 83.452 -44.410 90.082 -0.727 1.867 3.338 48.145 B B 8 9 7.014 B B 40 41 3.423 5.709 -0.319 -0.440 BB_G8U9:A41A40_BB 14 1.878 -2.307 47.791 -1.004 0.543 6.137 59.663 B B 9 11 6.411 B B 41 42 6.347 6.350 0.646 -2.170 BB_U9G11:A42A41_BB 15 8.570 -8.652 58.789 -2.793 0.177 1.004 -170.875 B B 11 13 -46.950 B B 42 43 -1.584 90.705 -3.318 1.924 BB_G11A13:U43A42_BB 16 143.848 74.458 -46.740 -0.863 -1.826 2.745 31.831 B B 24 25 13.214 B B 31 30 3.149 7.186 -0.390 -1.544 BB_C24C25:G30G31_BB 17 -1.258 2.313 31.005 -4.014 0.502 2.677 51.548 B B 25 26 14.201 B B 30 29 2.905 12.245 -1.416 -0.883 BB_C25G26:A29G30_BB 18 -1.655 1.919 50.144 -1.738 1.531 repository Initial release Version format compliance Version format compliance 1 0 2003-01-21 1 1 2008-04-28 1 2 2011-07-13 ribosomal protein L1 from Thermus thermophilus ribosomal protein L1 from Methanococcus jannaschii ribosomal protein L1 from Methanococcus thermolithotrophicus Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Crystal Structure Of The Ribosome At 5.5 A Resolution Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Ribosome RCSB Y RCSB 2002-10-09 REL REL MG MAGNESIUM ION HOH water Synthesis of the RNA fragment from the plasmid pDD55; sequence from cell-free(in vitro) system without living organism. sample MG 1 3 MG MG 56 B MG 2 3 MG MG 57 B MG 3 3 MG MG 58 B HOH 4 4 HOH HOH 59 B HOH 5 4 HOH HOH 60 B HOH 6 4 HOH HOH 61 B HOH 7 4 HOH HOH 62 B HOH 8 4 HOH HOH 63 B HOH 9 4 HOH HOH 64 B HOH 10 4 HOH HOH 65 B HOH 11 4 HOH HOH 66 B HOH 12 4 HOH HOH 67 B HOH 17 4 HOH HOH 68 B HOH 18 4 HOH HOH 69 B HOH 19 4 HOH HOH 70 B HOH 20 4 HOH HOH 71 B HOH 21 4 HOH HOH 72 B HOH 24 4 HOH HOH 73 B HOH 27 4 HOH HOH 74 B HOH 29 4 HOH HOH 75 B HOH 30 4 HOH HOH 76 B HOH 31 4 HOH HOH 77 B HOH 32 4 HOH HOH 78 B HOH 33 4 HOH HOH 79 B HOH 34 4 HOH HOH 80 B HOH 35 4 HOH HOH 81 B HOH 38 4 HOH HOH 82 B HOH 42 4 HOH HOH 83 B HOH 43 4 HOH HOH 84 B HOH 44 4 HOH HOH 85 B HOH 47 4 HOH HOH 86 B HOH 49 4 HOH HOH 87 B HOH 53 4 HOH HOH 88 B HOH 58 4 HOH HOH 89 B HOH 61 4 HOH HOH 90 B HOH 62 4 HOH HOH 91 B HOH 64 4 HOH HOH 92 B HOH 65 4 HOH HOH 93 B HOH 66 4 HOH HOH 94 B HOH 68 4 HOH HOH 95 B HOH 73 4 HOH HOH 96 B HOH 83 4 HOH HOH 97 B HOH 84 4 HOH HOH 98 B HOH 85 4 HOH HOH 99 B HOH 86 4 HOH HOH 100 B HOH 87 4 HOH HOH 101 B HOH 88 4 HOH HOH 102 B HOH 89 4 HOH HOH 103 B HOH 95 4 HOH HOH 104 B HOH 96 4 HOH HOH 105 B HOH 13 4 HOH HOH 218 A HOH 14 4 HOH HOH 219 A HOH 15 4 HOH HOH 220 A HOH 16 4 HOH HOH 221 A HOH 22 4 HOH HOH 222 A HOH 23 4 HOH HOH 223 A HOH 25 4 HOH HOH 224 A HOH 26 4 HOH HOH 225 A HOH 28 4 HOH HOH 226 A HOH 36 4 HOH HOH 227 A HOH 37 4 HOH HOH 228 A HOH 39 4 HOH HOH 229 A HOH 40 4 HOH HOH 230 A HOH 41 4 HOH HOH 231 A HOH 45 4 HOH HOH 232 A HOH 46 4 HOH HOH 233 A HOH 48 4 HOH HOH 234 A HOH 50 4 HOH HOH 235 A HOH 51 4 HOH HOH 236 A HOH 52 4 HOH HOH 237 A HOH 54 4 HOH HOH 238 A HOH 55 4 HOH HOH 239 A HOH 56 4 HOH HOH 240 A HOH 57 4 HOH HOH 241 A HOH 59 4 HOH HOH 242 A HOH 60 4 HOH HOH 243 A HOH 63 4 HOH HOH 244 A HOH 67 4 HOH HOH 245 A HOH 69 4 HOH HOH 246 A HOH 70 4 HOH HOH 247 A HOH 71 4 HOH HOH 248 A HOH 72 4 HOH HOH 249 A HOH 74 4 HOH HOH 250 A HOH 75 4 HOH HOH 251 A HOH 76 4 HOH HOH 252 A HOH 77 4 HOH HOH 253 A HOH 78 4 HOH HOH 254 A HOH 79 4 HOH HOH 255 A HOH 80 4 HOH HOH 256 A HOH 81 4 HOH HOH 257 A HOH 82 4 HOH HOH 258 A HOH 90 4 HOH HOH 259 A HOH 91 4 HOH HOH 260 A HOH 92 4 HOH HOH 261 A HOH 93 4 HOH HOH 262 A HOH 94 4 HOH HOH 263 A HOH 97 4 HOH HOH 264 A G 1 n 1 G 1 B G 2 n 2 G 2 B G 3 n 3 G 3 B A 4 n 4 A 4 B U 5 n 5 U 5 B G 6 n 6 G 6 B C 7 n 7 C 7 B G 8 n 8 G 8 B U 9 n 9 U 9 B A 10 n 10 A 10 B G 11 n 11 G 11 B G 12 n 12 G 12 B A 13 n 13 A 13 B U 14 n 14 U 14 B A 15 n 15 A 15 B G 16 n 16 G 16 B G 17 n 17 G 17 B U 18 n 18 U 18 B G 19 n 19 G 19 B G 20 n 20 G 20 B G 21 n 21 G 21 B A 22 n 22 A 22 B G 23 n 23 G 23 B C 24 n 24 C 24 B C 25 n 25 C 25 B G 26 n 26 G 26 B C 27 n 27 C 27 B A 28 n 28 A 28 B A 29 n 29 A 29 B G 30 n 30 G 30 B G 31 n 31 G 31 B C 32 n 32 C 32 B G 33 n 33 G 33 B C 34 n 34 C 34 B C 35 n 35 C 35 B G 36 n 36 G 36 B G 37 n 37 G 37 B U 38 n 38 U 38 B G 39 n 39 G 39 B A 40 n 40 A 40 B A 41 n 41 A 41 B A 42 n 42 A 42 B U 43 n 43 U 43 B A 44 n 44 A 44 B C 45 n 45 C 45 B C 46 n 46 C 46 B A 47 n 47 A 47 B C 48 n 48 C 48 B C 49 n 49 C 49 B C 50 n 50 C 50 B U 51 n 51 U 51 B U 52 n 52 U 52 B C 53 n 53 C 53 B C 54 n 54 C 54 B C 55 n 55 C 55 B MET 1 n 1 MET 1 A LEU 2 n 2 LEU 2 A ALA 3 n 3 ALA 3 A ASP 4 n 4 ASP 4 A LYS 5 n 5 LYS 5 A GLU 6 n 6 GLU 6 A SER 7 n 7 SER 7 A LEU 8 n 8 LEU 8 A ILE 9 n 9 ILE 9 A GLU 10 n 10 GLU 10 A ALA 11 n 11 ALA 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A LEU 14 n 14 LEU 14 A ALA 15 n 15 ALA 15 A LEU 16 n 16 LEU 16 A SER 17 n 17 SER 17 A THR 18 n 18 THR 18 A GLU 19 n 19 GLU 19 A TYR 20 n 20 TYR 20 A ASN 21 n 21 ASN 21 A VAL 22 n 22 VAL 22 A LYS 23 n 23 LYS 23 A ARG 24 n 24 ARG 24 A ASN 25 n 25 ASN 25 A PHE 26 n 26 PHE 26 A THR 27 n 27 THR 27 A GLN 28 n 28 GLN 28 A SER 29 n 29 SER 29 A VAL 30 n 30 VAL 30 A GLU 31 n 31 GLU 31 A ILE 32 n 32 ILE 32 A ILE 33 n 33 ILE 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A PHE 36 n 36 PHE 36 A LYS 37 n 37 LYS 37 A GLY 38 n 38 GLY 38 A ILE 39 n 39 ILE 39 A ASP 40 n 40 ASP 40 A MSE 41 n 41 MSE 41 A LYS 42 n 42 LYS 42 A LYS 43 n 43 LYS 43 A GLY 44 n 44 GLY 44 A ASP 45 n 45 ASP 45 A LEU 46 n 46 LEU 46 A LYS 47 n 47 LYS 47 A LEU 48 n 48 LEU 48 A ARG 49 n 49 ARG 49 A GLU 50 n 50 GLU 50 A ILE 51 n 51 ILE 51 A VAL 52 n 52 VAL 52 A PRO 53 n 53 PRO 53 A LEU 54 n 54 LEU 54 A PRO 55 n 55 PRO 55 A LYS 56 n 56 LYS 56 A GLN 57 n 57 GLN 57 A PRO 58 n 58 PRO 58 A SER 59 n 59 SER 59 A LYS 60 n 60 LYS 60 A ALA 61 n 61 ALA 61 A LYS 62 n 62 LYS 62 A ARG 63 n 63 ARG 63 A VAL 64 n 64 VAL 64 A LEU 65 n 65 LEU 65 A VAL 66 n 66 VAL 66 A VAL 67 n 67 VAL 67 A PRO 68 n 68 PRO 68 A SER 69 n 69 SER 69 A SER 70 n 70 SER 70 A GLU 71 n 71 GLU 71 A GLN 72 n 72 GLN 72 A LEU 73 n 73 LEU 73 A GLU 74 n 74 GLU 74 A TYR 75 n 75 TYR 75 A ALA 76 n 76 ALA 76 A LYS 77 n 77 LYS 77 A LYS 78 n 78 LYS 78 A ALA 79 n 79 ALA 79 A SER 80 n 80 SER 80 A PRO 81 n 81 PRO 81 A LYS 82 n 82 LYS 82 A VAL 83 n 83 VAL 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A THR 86 n 86 THR 86 A ARG 87 n 87 ARG 87 A GLU 88 n 88 GLU 88 A GLU 89 n 89 GLU 89 A LEU 90 n 90 LEU 90 A GLN 91 n 91 GLN 91 A LYS 92 n 92 LYS 92 A LEU 93 n 93 LEU 93 A GLN 94 n 94 GLN 94 A GLY 95 n 95 GLY 95 A GLN 96 n 96 GLN 96 A LYS 97 n 97 LYS 97 A ARG 98 n 98 ARG 98 A PRO 99 n 99 PRO 99 A VAL 100 n 100 VAL 100 A LYS 101 n 101 LYS 101 A LYS 102 n 102 LYS 102 A LEU 103 n 103 LEU 103 A ALA 104 n 104 ALA 104 A ARG 105 n 105 ARG 105 A GLN 106 n 106 GLN 106 A ASN 107 n 107 ASN 107 A GLU 108 n 108 GLU 108 A TRP 109 n 109 TRP 109 A PHE 110 n 110 PHE 110 A LEU 111 n 111 LEU 111 A ILE 112 n 112 ILE 112 A ASN 113 n 113 ASN 113 A GLN 114 n 114 GLN 114 A GLU 115 n 115 GLU 115 A SER 116 n 116 SER 116 A MSE 117 n 117 MSE 117 A ALA 118 n 118 ALA 118 A LEU 119 n 119 LEU 119 A ALA 120 n 120 ALA 120 A GLY 121 n 121 GLY 121 A ARG 122 n 122 ARG 122 A ILE 123 n 123 ILE 123 A LEU 124 n 124 LEU 124 A GLY 125 n 125 GLY 125 A PRO 126 n 126 PRO 126 A ALA 127 n 127 ALA 127 A LEU 128 n 128 LEU 128 A GLY 129 n 129 GLY 129 A PRO 130 n 130 PRO 130 A ARG 131 n 131 ARG 131 A GLY 132 n 132 GLY 132 A LYS 133 n 133 LYS 133 A PHE 134 n 134 PHE 134 A PRO 135 n 135 PRO 135 A THR 136 n 136 THR 136 A PRO 137 n 137 PRO 137 A LEU 138 n 138 LEU 138 A PRO 139 n 139 PRO 139 A ASN 140 n 140 ASN 140 A THR 141 n 141 THR 141 A ALA 142 n 142 ALA 142 A ASP 143 n 143 ASP 143 A ILE 144 n 144 ILE 144 A SER 145 n 145 SER 145 A GLU 146 n 146 GLU 146 A TYR 147 n 147 TYR 147 A ILE 148 n 148 ILE 148 A ASN 149 n 149 ASN 149 A ARG 150 n 150 ARG 150 A PHE 151 n 151 PHE 151 A LYS 152 n 152 LYS 152 A ARG 153 n 153 ARG 153 A SER 154 n 154 SER 154 A VAL 155 n 155 VAL 155 A LEU 156 n 156 LEU 156 A VAL 157 n 157 VAL 157 A LYS 158 n 158 LYS 158 A THR 159 n 159 THR 159 A LYS 160 n 160 LYS 160 A ASP 161 n 161 ASP 161 A GLN 162 n 162 GLN 162 A PRO 163 n 163 PRO 163 A GLN 164 n 164 GLN 164 A VAL 165 n 165 VAL 165 A GLN 166 n 166 GLN 166 A VAL 167 n 167 VAL 167 A PHE 168 n 168 PHE 168 A ILE 169 n 169 ILE 169 A GLY 170 n 170 GLY 170 A THR 171 n 171 THR 171 A GLU 172 n 172 GLU 172 A ASP 173 n 173 ASP 173 A MSE 174 n 174 MSE 174 A LYS 175 n 175 LYS 175 A PRO 176 n 176 PRO 176 A GLU 177 n 177 GLU 177 A ASP 178 n 178 ASP 178 A LEU 179 n 179 LEU 179 A ALA 180 n 180 ALA 180 A GLU 181 n 181 GLU 181 A ASN 182 n 182 ASN 182 A ALA 183 n 183 ALA 183 A ILE 184 n 184 ILE 184 A ALA 185 n 185 ALA 185 A VAL 186 n 186 VAL 186 A LEU 187 n 187 LEU 187 A ASN 188 n 188 ASN 188 A ALA 189 n 189 ALA 189 A ILE 190 n 190 ILE 190 A GLU 191 n 191 GLU 191 A ASN 192 n 192 ASN 192 A LYS 193 n 193 LYS 193 A ALA 194 n 194 ALA 194 A LYS 195 n 195 LYS 195 A VAL 196 n 196 VAL 196 A GLU 197 n 197 GLU 197 A THR 198 n 198 THR 198 A ASN 199 n 199 ASN 199 A LEU 200 n 200 LEU 200 A ARG 201 n 201 ARG 201 A ASN 202 n 202 ASN 202 A ILE 203 n 203 ILE 203 A TYR 204 n 204 TYR 204 A VAL 205 n 205 VAL 205 A LYS 206 n 206 LYS 206 A THR 207 n 207 THR 207 A THR 208 n 208 THR 208 A MSE 209 n 209 MSE 209 A GLY 210 n 210 GLY 210 A LYS 211 n 211 LYS 211 A ALA 212 n 212 ALA 212 A VAL 213 n 213 VAL 213 A LYS 214 n 214 LYS 214 A VAL 215 n 215 VAL 215 A LYS 216 n 216 LYS 216 A ARG 217 n 217 ARG 217 A author_defined_assembly 2 dimeric B G 21 A O6 G 21 1_555 B MG 57 D MG MG 1_555 B HOH 99 F O HOH 1_555 74.1 B G 21 A O6 G 21 1_555 B MG 57 D MG MG 1_555 B HOH 97 F O HOH 1_555 78.9 B HOH 99 F O HOH 1_555 B MG 57 D MG MG 1_555 B HOH 97 F O HOH 1_555 70.7 A MSE 41 SELENOMETHIONINE B MSE 41 MET A MSE 117 SELENOMETHIONINE B MSE 117 MET A MSE 174 SELENOMETHIONINE B MSE 174 MET A MSE 209 SELENOMETHIONINE B MSE 209 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 170 B O GLY 170 A N VAL 30 B N VAL 30 A N ILE 33 B N ILE 33 A O TYR 204 B O TYR 204 A N VAL 205 B N VAL 205 A O VAL 213 B O VAL 213 A N GLU 50 B N GLU 50 A O VAL 157 B O VAL 157 A O VAL 83 B O VAL 83 A N VAL 66 B N VAL 66 A N VAL 67 B N VAL 67 A O LEU 111 B O LEU 111 A N PHE 110 B N PHE 110 A O THR 136 B O THR 136 1 B A 13 0.115 SIDE CHAIN 1 B G 26 0.054 SIDE CHAIN 1 B G 39 0.060 SIDE CHAIN 1 8.90 1.30 114.00 122.90 B B B N9 C1' C2' A A A 13 13 13 N 1 B B P OP3 G G 1 1 -0.084 0.012 1.607 1.523 N 1 A LYS 42 -64.31 9.63 1 A ARG 49 -179.58 58.39 1 A PRO 68 -77.80 -133.11 1 A SER 145 -27.79 -54.52 1 A LYS 160 -122.19 -69.13 1 A ASP 161 -147.92 17.07 1 A ALA 194 -171.86 135.50 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP ION.PARAM WATER.TOP WATER_REP.PARAM ION.TOP 51.9 6.16 5.66 0.00 6.16 0.00 -12.33 0.266 0.009 0.219 0.259 0.219 2.65 25.00 952 19127 19127 5.0 99.1 RANDOM 1263310.50 1263310.50 0.000000 1 RESTRAINED THROUGHOUT 2.0 MAD Engh & Huber FLAT MODEL 32.521 0.32442 0.44 0.35 5.00 0.52 0.42 2.65 25.00 94 3002 3 1185 1720 0.006 1.3 20.6 1.39 1.49 1.50 2.59 2.00 1.75 2.00 2.70 2.50 0.421 0.043 0.338 2.74 94 1740 10 5.1 97.6 70.0 2.65 25.00 1MZP 22839 22839 0 0 0.057 1 7.8 99.1 0.376 2.65 2.70 97.2 data scaling XDS data reduction XDS refinement CNS phasing CNS 50s ribosomal protein L1P/RNA Structure of the L1 protuberance in the ribosome 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N 4 N N A ASP 4 B ASP 4 HELX_P A SER 17 B SER 17 1 1 14 A ASP 40 B ASP 40 HELX_P A GLY 44 B GLY 44 5 2 5 A SER 69 B SER 69 HELX_P A ALA 79 B ALA 79 1 3 11 A THR 86 B THR 86 HELX_P A GLN 94 B GLN 94 1 4 9 A GLN 96 B GLN 96 HELX_P A GLN 106 B GLN 106 1 5 11 A SER 116 B SER 116 HELX_P A LEU 124 B LEU 124 1 6 9 A LEU 124 B LEU 124 HELX_P A GLY 129 B GLY 129 1 7 6 A PRO 130 B PRO 130 HELX_P A GLY 132 B GLY 132 5 8 3 A ILE 144 B ILE 144 HELX_P A ARG 153 B ARG 153 1 9 10 A LYS 175 B LYS 175 HELX_P A ALA 194 B ALA 194 1 10 20 covale 1.330 A ASP 40 B C ASP 40 1_555 A MSE 41 B N MSE 41 1_555 covale 1.332 A MSE 41 B C MSE 41 1_555 A LYS 42 B N LYS 42 1_555 covale 1.326 A SER 116 B C SER 116 1_555 A MSE 117 B N MSE 117 1_555 covale 1.331 A MSE 117 B C MSE 117 1_555 A ALA 118 B N ALA 118 1_555 covale 1.327 A ASP 173 B C ASP 173 1_555 A MSE 174 B N MSE 174 1_555 covale 1.331 A MSE 174 B C MSE 174 1_555 A LYS 175 B N LYS 175 1_555 covale 1.327 A THR 208 B C THR 208 1_555 A MSE 209 B N MSE 209 1_555 covale 1.332 A MSE 209 B C MSE 209 1_555 A GLY 210 B N GLY 210 1_555 metalc 2.098 B MG 56 C MG MG 1_555 B HOH 98 F O HOH 1_555 metalc 2.202 B MG 57 D MG MG 1_555 B G 21 A O6 G 21 1_555 metalc 2.179 B MG 57 D MG MG 1_555 B HOH 99 F O HOH 1_555 metalc 2.090 B MG 57 D MG MG 1_555 B HOH 97 F O HOH 1_555 hydrog WATSON-CRICK B G 1 A N1 G 1 1_555 B C 55 A N3 C 55 1_555 hydrog WATSON-CRICK B G 1 A N2 G 1 1_555 B C 55 A O2 C 55 1_555 hydrog WATSON-CRICK B G 1 A O6 G 1 1_555 B C 55 A N4 C 55 1_555 hydrog WATSON-CRICK B G 2 A N1 G 2 1_555 B C 54 A N3 C 54 1_555 hydrog WATSON-CRICK B G 2 A N2 G 2 1_555 B C 54 A O2 C 54 1_555 hydrog WATSON-CRICK B G 2 A O6 G 2 1_555 B C 54 A N4 C 54 1_555 hydrog WATSON-CRICK B G 3 A N1 G 3 1_555 B C 53 A N3 C 53 1_555 hydrog WATSON-CRICK B G 3 A N2 G 3 1_555 B C 53 A O2 C 53 1_555 hydrog WATSON-CRICK B G 3 A O6 G 3 1_555 B C 53 A N4 C 53 1_555 hydrog WATSON-CRICK B A 4 A N1 A 4 1_555 B U 52 A N3 U 52 1_555 hydrog WATSON-CRICK B A 4 A N6 A 4 1_555 B U 52 A O4 U 52 1_555 hydrog TYPE_16_PAIR B U 5 A N3 U 5 1_555 B U 51 A O4 U 51 1_555 hydrog TYPE_16_PAIR B U 5 A O2 U 5 1_555 B U 51 A N3 U 51 1_555 hydrog WATSON-CRICK B G 6 A N1 G 6 1_555 B C 50 A N3 C 50 1_555 hydrog WATSON-CRICK B G 6 A N2 G 6 1_555 B C 50 A O2 C 50 1_555 hydrog WATSON-CRICK B G 6 A O6 G 6 1_555 B C 50 A N4 C 50 1_555 hydrog G-A MISPAIR B G 8 A O6 G 8 1_555 B A 40 A N6 A 40 1_555 hydrog U-A PAIR B U 9 A O4 U 9 1_555 B A 41 A N6 A 41 1_555 hydrog TYPE_5_PAIR B A 10 A N1 A 10 1_555 B A 15 A N6 A 15 1_555 hydrog TYPE_5_PAIR B A 10 A N6 A 10 1_555 B A 15 A N7 A 15 1_555 hydrog TYPE_10_PAIR B G 11 A N2 G 11 1_555 B A 42 A N1 A 42 1_555 hydrog TYPE_10_PAIR B G 11 A N3 G 11 1_555 B A 42 A N6 A 42 1_555 hydrog WATSON-CRICK B A 13 A N1 A 13 1_555 B U 43 A N3 U 43 1_555 hydrog WATSON-CRICK B A 13 A N6 A 13 1_555 B U 43 A O4 U 43 1_555 hydrog TYPE_10_PAIR B A 15 A N1 A 15 1_555 B G 39 A N2 G 39 1_555 hydrog TYPE_10_PAIR B A 15 A N6 A 15 1_555 B G 39 A N3 G 39 1_555 hydrog WATSON-CRICK B G 16 A N1 G 16 1_555 B C 49 A N3 C 49 1_555 hydrog WATSON-CRICK B G 16 A N2 G 16 1_555 B C 49 A O2 C 49 1_555 hydrog WATSON-CRICK B G 16 A O6 G 16 1_555 B C 49 A N4 C 49 1_555 hydrog WATSON-CRICK B G 17 A N1 G 17 1_555 B C 48 A N3 C 48 1_555 hydrog WATSON-CRICK B G 17 A N2 G 17 1_555 B C 48 A O2 C 48 1_555 hydrog WATSON-CRICK B G 17 A O6 G 17 1_555 B C 48 A N4 C 48 1_555 hydrog WATSON-CRICK B U 18 A N3 U 18 1_555 B A 47 A N1 A 47 1_555 hydrog WATSON-CRICK B U 18 A O4 U 18 1_555 B A 47 A N6 A 47 1_555 hydrog WATSON-CRICK B G 19 A N1 G 19 1_555 B C 46 A N3 C 46 1_555 hydrog WATSON-CRICK B G 19 A N2 G 19 1_555 B C 46 A O2 C 46 1_555 hydrog WATSON-CRICK B G 19 A O6 G 19 1_555 B C 46 A N4 C 46 1_555 hydrog WATSON-CRICK B G 20 A N1 G 20 1_555 B C 45 A N3 C 45 1_555 hydrog WATSON-CRICK B G 20 A N2 G 20 1_555 B C 45 A O2 C 45 1_555 hydrog WATSON-CRICK B G 20 A O6 G 20 1_555 B C 45 A N4 C 45 1_555 hydrog TYPE_11_PAIR B G 21 A N2 G 21 1_555 B A 44 A N7 A 44 1_555 hydrog TYPE_11_PAIR B G 21 A N3 G 21 1_555 B A 44 A N6 A 44 1_555 hydrog A-G MISPAIR B A 22 A N3 A 22 1_555 B G 33 A N2 G 33 1_555 hydrog WATSON-CRICK B G 23 A N1 G 23 1_555 B C 32 A N3 C 32 1_555 hydrog WATSON-CRICK B G 23 A N2 G 23 1_555 B C 32 A O2 C 32 1_555 hydrog WATSON-CRICK B G 23 A O6 G 23 1_555 B C 32 A N4 C 32 1_555 hydrog G-A MISPAIR B G 23 A N2 G 23 1_555 B A 44 A N3 A 44 1_555 hydrog WATSON-CRICK B C 24 A N3 C 24 1_555 B G 31 A N1 G 31 1_555 hydrog WATSON-CRICK B C 24 A N4 C 24 1_555 B G 31 A O6 G 31 1_555 hydrog WATSON-CRICK B C 24 A O2 C 24 1_555 B G 31 A N2 G 31 1_555 hydrog WATSON-CRICK B C 25 A N3 C 25 1_555 B G 30 A N1 G 30 1_555 hydrog WATSON-CRICK B C 25 A N4 C 25 1_555 B G 30 A O6 G 30 1_555 hydrog WATSON-CRICK B C 25 A O2 C 25 1_555 B G 30 A N2 G 30 1_555 hydrog G-A MISPAIR B G 26 A N2 G 26 1_555 B A 29 A N7 A 29 1_555 hydrog G-U MISPAIR B G 37 A N1 G 37 1_555 B U 43 A O4 U 43 1_555 hydrog REVERSED HOOGSTEEN B U 38 A N3 U 38 1_555 B A 42 A N7 A 42 1_555 hydrog REVERSED HOOGSTEEN B U 38 A O2 U 38 1_555 B A 42 A N6 A 42 1_555 RIBOSOME ribosome, ribosomal protein, RNA-protein complex RL1_SULAC UNP 2 5 P35024 LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP KVVITREELQKLQGQKRPVKKLAIQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVIVKTKD QPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETNLRNIYVKTTMGKAVKVKR 1MZP PDB 1 1MZP 5 220 1MZP 2 217 P35024 A 1 2 217 1 55 1MZP 1 55 1MZP B 2 1 55 1 CLONING ARTIFACT MET 1 1MZP A P35024 UNP 1 1 MET MODIFIED RESIDUE MSE 41 1MZP A P35024 UNP 44 41 1 ILE CONFLICT ARG 105 1MZP A P35024 UNP 108 105 1 MET MODIFIED RESIDUE MSE 117 1MZP A P35024 UNP 120 117 1 ILE CONFLICT LEU 156 1MZP A P35024 UNP 159 156 1 MET MODIFIED RESIDUE MSE 174 1MZP A P35024 UNP 177 174 1 MET MODIFIED RESIDUE MSE 209 1MZP A P35024 UNP 212 209 4 2 4 anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel A GLN 164 B GLN 164 A THR 171 B THR 171 A SER 29 B SER 29 A PHE 36 B PHE 36 A LEU 200 B LEU 200 A THR 207 B THR 207 A VAL 213 B VAL 213 A LYS 214 B LYS 214 A ARG 49 B ARG 49 A PRO 53 B PRO 53 A SER 154 B SER 154 A LYS 158 B LYS 158 A VAL 83 B VAL 83 A VAL 84 B VAL 84 A VAL 64 B VAL 64 A VAL 67 B VAL 67 A TRP 109 B TRP 109 A ILE 112 B ILE 112 A PRO 135 B PRO 135 A PRO 137 B PRO 137 BINDING SITE FOR RESIDUE MG B 56 Software 1 BINDING SITE FOR RESIDUE MG B 57 Software 4 B HOH 98 F HOH 1 1_555 A ARG 105 B ARG 105 4 1_555 B G 21 A G 21 4 1_555 B HOH 97 F HOH 4 1_555 B HOH 99 F HOH 4 1_555 179 P 65 2 2