1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Plambeck, C.A.
Fairley, K.
Kwan, A.H.Y.
Westman, B.J.
Adams, D.
Morris, B.
Mackay, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.BIOL.CHEM.
JBCHA3
0071
0021-9258
278
22805
22811
10.1074/jbc.M301896200
12657633
The structure of the zinc finger domain from human splicing factor ZNF265 fold
2003
10.2210/pdb1n0z/pdb
pdb_00001n0z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
5004.670
ZNF265
ZNF265-F1
N34D
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
Zinc finger protein 265
no
no
GSMSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGPI
GSMSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGPI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
ZNF265
9606
Homo sapiens
562
Escherichia coli
DH5a
plasmid
pGEX-4T
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-07-22
1
1
2008-04-28
1
2
2011-07-13
1
3
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2002-10-15
REL
REL
ZN
ZINC ION
The structure was determined using standard 2D NMR homonuclear techniques.
structures with the lowest energy
1000
20
2D NOESY
2D TOCSY
DQF-COSY
Short mixing time NOESY
Short mixing time TOCSY
5.8
ambient
298
K
Structure calculations were performed using the package ARIA1.2 (Ambiguous Restraints in Iterative Assignment). Final structures are based on 709 unambiguous NOE-derived distance constraints, 14 sets of ambiguous NOE-derived distance constraints and 22 additional dihedral angle restraints.
simulated annealing, molecular dynamics, torsion angle dynamics
1
lowest energy
1mM ZNF265-F1, 2mM TCEP, 1.7mM ZnZO4
95% H2O/5% D2O
Bruker
processing
XwinNMR
2.5
Bartels et al
data analysis
XEASY
1.3.13
Guntert et al
refinement
DYANA
1.5
Linge et al
structure solution
ARIA
1.2
600
Bruker
DRX
ZN
46
2
ZN
ZN
46
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
MET
3
n
3
MET
3
A
SER
4
n
4
SER
4
A
THR
5
n
5
THR
5
A
LYS
6
n
6
LYS
6
A
ASN
7
n
7
ASN
7
A
PHE
8
n
8
PHE
8
A
ARG
9
n
9
ARG
9
A
VAL
10
n
10
VAL
10
A
SER
11
n
11
SER
11
A
ASP
12
n
12
ASP
12
A
GLY
13
n
13
GLY
13
A
ASP
14
n
14
ASP
14
A
TRP
15
n
15
TRP
15
A
ILE
16
n
16
ILE
16
A
CYS
17
n
17
CYS
17
A
PRO
18
n
18
PRO
18
A
ASP
19
n
19
ASP
19
A
LYS
20
n
20
LYS
20
A
LYS
21
n
21
LYS
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
ASN
24
n
24
ASN
24
A
VAL
25
n
25
VAL
25
A
ASN
26
n
26
ASN
26
A
PHE
27
n
27
PHE
27
A
ALA
28
n
28
ALA
28
A
ARG
29
n
29
ARG
29
A
ARG
30
n
30
ARG
30
A
THR
31
n
31
THR
31
A
SER
32
n
32
SER
32
A
CYS
33
n
33
CYS
33
A
ASP
34
n
34
ASP
34
A
ARG
35
n
35
ARG
35
A
CYS
36
n
36
CYS
36
A
GLY
37
n
37
GLY
37
A
ARG
38
n
38
ARG
38
A
GLU
39
n
39
GLU
39
A
LYS
40
n
40
LYS
40
A
THR
41
n
41
THR
41
A
THR
42
n
42
THR
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
ILE
45
n
45
ILE
45
A
author_defined_assembly
1
monomeric
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
22
A
SG
CYS
22
1_555
107.9
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
33
A
SG
CYS
33
1_555
108.5
A
CYS
22
A
SG
CYS
22
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
33
A
SG
CYS
33
1_555
113.0
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
36
A
SG
CYS
36
1_555
110.1
A
CYS
22
A
SG
CYS
22
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
36
A
SG
CYS
36
1_555
107.8
A
CYS
33
A
SG
CYS
33
1_555
A
ZN
46
B
ZN
ZN
1_555
A
CYS
36
A
SG
CYS
36
1_555
109.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
6
A
A
HH2
HH12
TRP
ARG
15
38
1.29
6
A
A
HB3
H
CYS
GLY
33
37
1.32
7
A
A
HB3
HB3
CYS
CYS
17
22
1.31
14
A
A
HB2
H
SER
ASP
11
12
1.32
14
A
A
HG
OD1
SER
ASP
11
14
1.60
15
A
A
HB3
H
CYS
GLY
33
37
1.20
15
A
A
HD21
HA
ASN
CYS
26
33
1.29
17
A
A
HH21
OD2
ARG
ASP
30
34
1.58
18
A
A
OD1
HZ3
ASP
LYS
14
40
1.59
19
A
A
HB3
HB3
CYS
CYS
17
22
1.28
1
A
MET
3
62.64
83.71
1
A
ARG
9
-91.59
49.43
1
A
CYS
22
-90.42
-79.67
1
A
PHE
27
-45.41
-82.24
1
A
ALA
28
178.39
-66.65
1
A
LYS
40
-59.19
107.22
2
A
THR
5
62.66
-89.32
2
A
ILE
16
-135.40
-75.48
2
A
CYS
22
-119.41
-86.76
2
A
CYS
36
-93.26
-61.24
2
A
ARG
38
-175.73
-132.10
2
A
THR
41
-69.86
88.44
3
A
THR
5
-90.70
-133.02
3
A
VAL
10
-66.95
95.12
3
A
ILE
16
-111.88
-108.89
3
A
LYS
20
72.46
150.66
3
A
LYS
21
-75.62
39.01
3
A
CYS
22
-77.20
-78.60
3
A
PHE
27
-48.41
-80.84
3
A
ALA
28
179.81
-59.32
3
A
THR
41
-46.71
106.49
4
A
THR
5
-77.91
-106.91
4
A
LYS
6
-100.80
48.65
4
A
VAL
10
78.25
133.54
4
A
ILE
16
71.11
138.98
4
A
CYS
22
-97.06
-73.11
4
A
PHE
27
-65.27
-74.91
4
A
ALA
28
-179.09
-76.80
4
A
ARG
29
-77.45
42.79
4
A
LYS
40
-58.60
107.21
4
A
THR
42
-143.96
-42.76
5
A
MET
3
-104.08
-80.23
5
A
SER
4
54.86
-100.67
5
A
LYS
6
-100.86
69.41
5
A
PHE
8
59.55
77.45
5
A
LYS
20
-77.62
31.78
5
A
CYS
22
-98.65
-91.25
6
A
THR
5
68.68
104.37
6
A
PHE
8
-65.73
92.53
6
A
ILE
16
-98.80
-117.21
6
A
CYS
22
-88.02
-79.74
6
A
PHE
27
-73.75
-131.85
6
A
ALA
28
-140.09
-62.99
6
A
ARG
29
-78.95
41.61
6
A
ARG
35
-104.44
-68.26
6
A
PRO
44
-65.83
99.90
7
A
MET
3
73.10
-52.69
7
A
ASN
7
-100.40
-153.33
7
A
VAL
10
-151.58
25.68
7
A
SER
11
-102.05
-139.06
7
A
CYS
22
-97.20
-85.81
7
A
PHE
27
-61.89
-89.40
7
A
ALA
28
179.81
-65.14
7
A
LYS
40
-57.28
102.32
8
A
MET
3
-77.65
-73.06
8
A
THR
5
-78.29
23.97
8
A
ILE
16
-112.16
-101.20
8
A
CYS
22
-80.28
-78.44
8
A
PHE
27
-76.64
-135.59
8
A
ALA
28
-134.03
-50.46
8
A
ARG
35
-92.78
-64.98
9
A
MET
3
-103.91
-62.57
9
A
CYS
22
-80.56
-82.43
9
A
PHE
27
-51.72
-76.47
9
A
ALA
28
179.67
-80.76
9
A
ARG
35
-147.89
-36.89
9
A
ARG
38
-171.19
-156.56
9
A
LYS
40
-59.59
92.15
9
A
PRO
44
-74.86
-155.16
10
A
SER
4
-141.62
-63.58
10
A
ARG
9
-92.58
36.12
10
A
SER
11
-72.80
-168.34
10
A
CYS
22
-99.28
-79.26
10
A
PHE
27
-61.28
-85.24
10
A
ALA
28
179.98
-58.35
10
A
ARG
29
-78.11
31.74
10
A
LYS
40
-64.17
90.39
10
A
THR
41
-89.03
47.03
11
A
ARG
9
-84.79
45.11
11
A
SER
11
-97.08
50.47
11
A
ASP
12
-82.37
-143.57
11
A
ILE
16
-94.80
-80.02
11
A
CYS
22
-98.24
-89.53
12
A
THR
5
68.94
127.39
12
A
LYS
6
-59.15
108.85
12
A
CYS
22
-110.30
-82.39
12
A
PHE
27
-19.52
-79.50
12
A
ALA
28
-176.50
-64.73
12
A
ARG
29
-82.08
41.35
13
A
LYS
6
-92.60
39.21
13
A
ILE
16
-122.36
-60.17
13
A
CYS
22
-104.21
-81.62
14
A
SER
2
49.06
-106.66
14
A
SER
4
-86.62
49.28
14
A
SER
11
-82.63
-136.05
14
A
CYS
17
-41.09
150.42
14
A
CYS
22
-76.94
-83.72
14
A
PHE
27
-62.67
-93.38
14
A
ALA
28
-163.42
-79.88
14
A
ARG
29
-84.48
42.22
14
A
ARG
35
-142.71
-30.73
15
A
PHE
8
-148.81
-158.54
15
A
ASP
12
-102.57
-121.45
15
A
CYS
17
-39.61
141.67
15
A
CYS
22
-96.31
-70.03
15
A
PHE
27
-18.63
-82.49
15
A
ALA
28
179.45
-50.26
15
A
ARG
35
-123.95
-66.72
15
A
LYS
40
-63.32
96.74
16
A
THR
5
-81.12
-105.48
16
A
PHE
8
-89.55
39.94
16
A
CYS
22
-90.18
-83.01
16
A
PHE
27
-34.81
-75.13
16
A
ALA
28
176.69
-47.67
16
A
ARG
35
-101.00
-69.40
17
A
SER
11
-101.27
-136.96
17
A
CYS
22
-101.91
-86.35
17
A
PHE
27
-53.30
-77.70
17
A
ALA
28
-178.34
-65.16
17
A
ARG
29
-71.39
24.37
18
A
MET
3
79.67
-30.03
18
A
SER
11
-68.30
-80.46
18
A
ASP
12
-102.28
-149.53
18
A
ILE
16
-108.41
-75.16
18
A
CYS
22
-88.38
-85.33
18
A
PHE
27
-83.91
-92.58
18
A
ALA
28
-166.09
-62.20
18
A
LYS
40
-69.17
89.70
18
A
THR
42
75.32
-47.97
19
A
CYS
22
-87.45
-83.60
19
A
ARG
35
-103.33
-65.41
19
A
PRO
44
-66.33
-97.31
20
A
SER
2
69.55
-67.58
20
A
PHE
8
61.35
80.20
20
A
ASP
12
-100.44
-145.08
20
A
LYS
20
-81.97
35.91
20
A
CYS
22
-108.12
-74.96
20
A
PHE
27
-37.02
-73.46
20
A
ALA
28
178.47
-59.32
20
A
LYS
40
-55.03
99.99
Solution structure of the first zinc-finger domain from ZNF265
1
N
N
2
N
N
metalc
2.239
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
46
B
ZN
ZN
1_555
metalc
2.277
A
CYS
22
A
SG
CYS
22
1_555
A
ZN
46
B
ZN
ZN
1_555
metalc
2.290
A
CYS
33
A
SG
CYS
33
1_555
A
ZN
46
B
ZN
ZN
1_555
metalc
2.290
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
46
B
ZN
ZN
1_555
TRANSCRIPTION
zinc finger, RNA splicing, TRANSCRIPTION
ZN265_HUMAN
UNP
1
1
O95218
MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTT
1
40
1N0Z
3
42
O95218
A
1
3
42
1
cloning artifact
GLY
1
1N0Z
A
O95218
UNP
1
1
cloning artifact
SER
2
1N0Z
A
O95218
UNP
2
1
ASN
engineered mutation
ASP
34
1N0Z
A
O95218
UNP
32
34
1
cloning artifact
GLY
43
1N0Z
A
O95218
UNP
43
1
cloning artifact
PRO
44
1N0Z
A
O95218
UNP
44
1
cloning artifact
ILE
45
1N0Z
A
O95218
UNP
45
BINDING SITE FOR RESIDUE ZN A 46
A
ZN
46
Software
4
A
CYS
17
A
CYS
17
4
1_555
A
CYS
22
A
CYS
22
4
1_555
A
CYS
33
A
CYS
33
4
1_555
A
CYS
36
A
CYS
36
4
1_555