1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Plambeck, C.A. Fairley, K. Kwan, A.H.Y. Westman, B.J. Adams, D. Morris, B. Mackay, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US J.BIOL.CHEM. JBCHA3 0071 0021-9258 278 22805 22811 10.1074/jbc.M301896200 12657633 The structure of the zinc finger domain from human splicing factor ZNF265 fold 2003 10.2210/pdb1n0z/pdb pdb_00001n0z 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5004.670 ZNF265 ZNF265-F1 N34D 1 man polymer 65.409 ZINC ION 1 syn non-polymer Zinc finger protein 265 no no GSMSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGPI GSMSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGPI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample ZNF265 9606 Homo sapiens 562 Escherichia coli DH5a plasmid pGEX-4T database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-07-22 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2002-10-15 REL REL ZN ZINC ION The structure was determined using standard 2D NMR homonuclear techniques. structures with the lowest energy 1000 20 2D NOESY 2D TOCSY DQF-COSY Short mixing time NOESY Short mixing time TOCSY 5.8 ambient 298 K Structure calculations were performed using the package ARIA1.2 (Ambiguous Restraints in Iterative Assignment). Final structures are based on 709 unambiguous NOE-derived distance constraints, 14 sets of ambiguous NOE-derived distance constraints and 22 additional dihedral angle restraints. simulated annealing, molecular dynamics, torsion angle dynamics 1 lowest energy 1mM ZNF265-F1, 2mM TCEP, 1.7mM ZnZO4 95% H2O/5% D2O Bruker processing XwinNMR 2.5 Bartels et al data analysis XEASY 1.3.13 Guntert et al refinement DYANA 1.5 Linge et al structure solution ARIA 1.2 600 Bruker DRX ZN 46 2 ZN ZN 46 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A MET 3 n 3 MET 3 A SER 4 n 4 SER 4 A THR 5 n 5 THR 5 A LYS 6 n 6 LYS 6 A ASN 7 n 7 ASN 7 A PHE 8 n 8 PHE 8 A ARG 9 n 9 ARG 9 A VAL 10 n 10 VAL 10 A SER 11 n 11 SER 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A ASP 14 n 14 ASP 14 A TRP 15 n 15 TRP 15 A ILE 16 n 16 ILE 16 A CYS 17 n 17 CYS 17 A PRO 18 n 18 PRO 18 A ASP 19 n 19 ASP 19 A LYS 20 n 20 LYS 20 A LYS 21 n 21 LYS 21 A CYS 22 n 22 CYS 22 A GLY 23 n 23 GLY 23 A ASN 24 n 24 ASN 24 A VAL 25 n 25 VAL 25 A ASN 26 n 26 ASN 26 A PHE 27 n 27 PHE 27 A ALA 28 n 28 ALA 28 A ARG 29 n 29 ARG 29 A ARG 30 n 30 ARG 30 A THR 31 n 31 THR 31 A SER 32 n 32 SER 32 A CYS 33 n 33 CYS 33 A ASP 34 n 34 ASP 34 A ARG 35 n 35 ARG 35 A CYS 36 n 36 CYS 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A GLU 39 n 39 GLU 39 A LYS 40 n 40 LYS 40 A THR 41 n 41 THR 41 A THR 42 n 42 THR 42 A GLY 43 n 43 GLY 43 A PRO 44 n 44 PRO 44 A ILE 45 n 45 ILE 45 A author_defined_assembly 1 monomeric A CYS 17 A SG CYS 17 1_555 A ZN 46 B ZN ZN 1_555 A CYS 22 A SG CYS 22 1_555 107.9 A CYS 17 A SG CYS 17 1_555 A ZN 46 B ZN ZN 1_555 A CYS 33 A SG CYS 33 1_555 108.5 A CYS 22 A SG CYS 22 1_555 A ZN 46 B ZN ZN 1_555 A CYS 33 A SG CYS 33 1_555 113.0 A CYS 17 A SG CYS 17 1_555 A ZN 46 B ZN ZN 1_555 A CYS 36 A SG CYS 36 1_555 110.1 A CYS 22 A SG CYS 22 1_555 A ZN 46 B ZN ZN 1_555 A CYS 36 A SG CYS 36 1_555 107.8 A CYS 33 A SG CYS 33 1_555 A ZN 46 B ZN ZN 1_555 A CYS 36 A SG CYS 36 1_555 109.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 6 A A HH2 HH12 TRP ARG 15 38 1.29 6 A A HB3 H CYS GLY 33 37 1.32 7 A A HB3 HB3 CYS CYS 17 22 1.31 14 A A HB2 H SER ASP 11 12 1.32 14 A A HG OD1 SER ASP 11 14 1.60 15 A A HB3 H CYS GLY 33 37 1.20 15 A A HD21 HA ASN CYS 26 33 1.29 17 A A HH21 OD2 ARG ASP 30 34 1.58 18 A A OD1 HZ3 ASP LYS 14 40 1.59 19 A A HB3 HB3 CYS CYS 17 22 1.28 1 A MET 3 62.64 83.71 1 A ARG 9 -91.59 49.43 1 A CYS 22 -90.42 -79.67 1 A PHE 27 -45.41 -82.24 1 A ALA 28 178.39 -66.65 1 A LYS 40 -59.19 107.22 2 A THR 5 62.66 -89.32 2 A ILE 16 -135.40 -75.48 2 A CYS 22 -119.41 -86.76 2 A CYS 36 -93.26 -61.24 2 A ARG 38 -175.73 -132.10 2 A THR 41 -69.86 88.44 3 A THR 5 -90.70 -133.02 3 A VAL 10 -66.95 95.12 3 A ILE 16 -111.88 -108.89 3 A LYS 20 72.46 150.66 3 A LYS 21 -75.62 39.01 3 A CYS 22 -77.20 -78.60 3 A PHE 27 -48.41 -80.84 3 A ALA 28 179.81 -59.32 3 A THR 41 -46.71 106.49 4 A THR 5 -77.91 -106.91 4 A LYS 6 -100.80 48.65 4 A VAL 10 78.25 133.54 4 A ILE 16 71.11 138.98 4 A CYS 22 -97.06 -73.11 4 A PHE 27 -65.27 -74.91 4 A ALA 28 -179.09 -76.80 4 A ARG 29 -77.45 42.79 4 A LYS 40 -58.60 107.21 4 A THR 42 -143.96 -42.76 5 A MET 3 -104.08 -80.23 5 A SER 4 54.86 -100.67 5 A LYS 6 -100.86 69.41 5 A PHE 8 59.55 77.45 5 A LYS 20 -77.62 31.78 5 A CYS 22 -98.65 -91.25 6 A THR 5 68.68 104.37 6 A PHE 8 -65.73 92.53 6 A ILE 16 -98.80 -117.21 6 A CYS 22 -88.02 -79.74 6 A PHE 27 -73.75 -131.85 6 A ALA 28 -140.09 -62.99 6 A ARG 29 -78.95 41.61 6 A ARG 35 -104.44 -68.26 6 A PRO 44 -65.83 99.90 7 A MET 3 73.10 -52.69 7 A ASN 7 -100.40 -153.33 7 A VAL 10 -151.58 25.68 7 A SER 11 -102.05 -139.06 7 A CYS 22 -97.20 -85.81 7 A PHE 27 -61.89 -89.40 7 A ALA 28 179.81 -65.14 7 A LYS 40 -57.28 102.32 8 A MET 3 -77.65 -73.06 8 A THR 5 -78.29 23.97 8 A ILE 16 -112.16 -101.20 8 A CYS 22 -80.28 -78.44 8 A PHE 27 -76.64 -135.59 8 A ALA 28 -134.03 -50.46 8 A ARG 35 -92.78 -64.98 9 A MET 3 -103.91 -62.57 9 A CYS 22 -80.56 -82.43 9 A PHE 27 -51.72 -76.47 9 A ALA 28 179.67 -80.76 9 A ARG 35 -147.89 -36.89 9 A ARG 38 -171.19 -156.56 9 A LYS 40 -59.59 92.15 9 A PRO 44 -74.86 -155.16 10 A SER 4 -141.62 -63.58 10 A ARG 9 -92.58 36.12 10 A SER 11 -72.80 -168.34 10 A CYS 22 -99.28 -79.26 10 A PHE 27 -61.28 -85.24 10 A ALA 28 179.98 -58.35 10 A ARG 29 -78.11 31.74 10 A LYS 40 -64.17 90.39 10 A THR 41 -89.03 47.03 11 A ARG 9 -84.79 45.11 11 A SER 11 -97.08 50.47 11 A ASP 12 -82.37 -143.57 11 A ILE 16 -94.80 -80.02 11 A CYS 22 -98.24 -89.53 12 A THR 5 68.94 127.39 12 A LYS 6 -59.15 108.85 12 A CYS 22 -110.30 -82.39 12 A PHE 27 -19.52 -79.50 12 A ALA 28 -176.50 -64.73 12 A ARG 29 -82.08 41.35 13 A LYS 6 -92.60 39.21 13 A ILE 16 -122.36 -60.17 13 A CYS 22 -104.21 -81.62 14 A SER 2 49.06 -106.66 14 A SER 4 -86.62 49.28 14 A SER 11 -82.63 -136.05 14 A CYS 17 -41.09 150.42 14 A CYS 22 -76.94 -83.72 14 A PHE 27 -62.67 -93.38 14 A ALA 28 -163.42 -79.88 14 A ARG 29 -84.48 42.22 14 A ARG 35 -142.71 -30.73 15 A PHE 8 -148.81 -158.54 15 A ASP 12 -102.57 -121.45 15 A CYS 17 -39.61 141.67 15 A CYS 22 -96.31 -70.03 15 A PHE 27 -18.63 -82.49 15 A ALA 28 179.45 -50.26 15 A ARG 35 -123.95 -66.72 15 A LYS 40 -63.32 96.74 16 A THR 5 -81.12 -105.48 16 A PHE 8 -89.55 39.94 16 A CYS 22 -90.18 -83.01 16 A PHE 27 -34.81 -75.13 16 A ALA 28 176.69 -47.67 16 A ARG 35 -101.00 -69.40 17 A SER 11 -101.27 -136.96 17 A CYS 22 -101.91 -86.35 17 A PHE 27 -53.30 -77.70 17 A ALA 28 -178.34 -65.16 17 A ARG 29 -71.39 24.37 18 A MET 3 79.67 -30.03 18 A SER 11 -68.30 -80.46 18 A ASP 12 -102.28 -149.53 18 A ILE 16 -108.41 -75.16 18 A CYS 22 -88.38 -85.33 18 A PHE 27 -83.91 -92.58 18 A ALA 28 -166.09 -62.20 18 A LYS 40 -69.17 89.70 18 A THR 42 75.32 -47.97 19 A CYS 22 -87.45 -83.60 19 A ARG 35 -103.33 -65.41 19 A PRO 44 -66.33 -97.31 20 A SER 2 69.55 -67.58 20 A PHE 8 61.35 80.20 20 A ASP 12 -100.44 -145.08 20 A LYS 20 -81.97 35.91 20 A CYS 22 -108.12 -74.96 20 A PHE 27 -37.02 -73.46 20 A ALA 28 178.47 -59.32 20 A LYS 40 -55.03 99.99 Solution structure of the first zinc-finger domain from ZNF265 1 N N 2 N N metalc 2.239 A CYS 17 A SG CYS 17 1_555 A ZN 46 B ZN ZN 1_555 metalc 2.277 A CYS 22 A SG CYS 22 1_555 A ZN 46 B ZN ZN 1_555 metalc 2.290 A CYS 33 A SG CYS 33 1_555 A ZN 46 B ZN ZN 1_555 metalc 2.290 A CYS 36 A SG CYS 36 1_555 A ZN 46 B ZN ZN 1_555 TRANSCRIPTION zinc finger, RNA splicing, TRANSCRIPTION ZN265_HUMAN UNP 1 1 O95218 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTT 1 40 1N0Z 3 42 O95218 A 1 3 42 1 cloning artifact GLY 1 1N0Z A O95218 UNP 1 1 cloning artifact SER 2 1N0Z A O95218 UNP 2 1 ASN engineered mutation ASP 34 1N0Z A O95218 UNP 32 34 1 cloning artifact GLY 43 1N0Z A O95218 UNP 43 1 cloning artifact PRO 44 1N0Z A O95218 UNP 44 1 cloning artifact ILE 45 1N0Z A O95218 UNP 45 BINDING SITE FOR RESIDUE ZN A 46 A ZN 46 Software 4 A CYS 17 A CYS 17 4 1_555 A CYS 22 A CYS 22 4 1_555 A CYS 33 A CYS 33 4 1_555 A CYS 36 A CYS 36 4 1_555