0.016755
0.000000
0.000000
0.000000
0.015261
0.000000
0.000000
0.000000
0.006908
0.00000
0.00000
0.00000
Fedorov, A.A.
Ball, T.
Leistler, B.
Valenta, R.
Almo, S.C.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
90.0
90.0
59.685
65.526
144.769
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
X-ray Crystal Structure of Phl p 1, a Major Timothy Grass Pollen Allergen
CH
INT.ARCH.ALLERGY.IMMUNOL
1018-2438
113
109
113
X-ray Crystal Structures of Birch Pollen Profilin and Phl p 2
1997
UK
STRUCTURE
STRUE6
2005
0969-2126
5
33
45
10.1016/S0969-2126(97)00164-0
The molecular basis for allergen cross-reactivity: crystal structure and IgE-epitope mapping of birch pollen profilin
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93.0
1
CCD
2002-06-29
MARRESEARCH
Crystal
MAD
M
x-ray
1
1.01
1.0
X9A
NSLS
1.01
SYNCHROTRON
NSLS BEAMLINE X9A
26265.584
Pollen allergen Phl p 1
2
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
non-polymer
Phl p I
no
no
AIPKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK
PEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY
LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES
K
AIPKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK
PEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY
LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES
K
A,B
NYSGXRC-T1467
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
timothy grass
Phleum
fall armyworm
Spodoptera
sample
PHLPI
15957
Phleum pratense
7108
Spodoptera frugiperda
baculovirus
1
2.584
50.56
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 4000, ammonium sulfate, tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
audit_author
chem_comp
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Data collection
Derived calculations
Structure summary
Structure summary
1
0
2003-01-28
1
1
2008-04-28
1
2
2011-07-13
1
3
2020-07-29
1
4
2021-02-03
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_audit_author.identifier_ORCID
_chem_comp.pdbx_synonyms
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Y
RCSB
Y
RCSB
2002-10-16
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NAG
3001
2
NAG
NAG
3001
A
NAG
3002
2
NAG
NAG
3002
B
n
1
1001
A
n
2
1002
A
PRO
1003
n
3
PRO
1003
A
LYS
1004
n
4
LYS
1004
A
VAL
1005
n
5
VAL
1005
A
PRO
1006
n
6
PRO
1006
A
PRO
1007
n
7
PRO
1007
A
GLY
1008
n
8
GLY
1008
A
PRO
1009
n
9
PRO
1009
A
ASN
1010
n
10
ASN
1010
A
ILE
1011
n
11
ILE
1011
A
THR
1012
n
12
THR
1012
A
ALA
1013
n
13
ALA
1013
A
THR
1014
n
14
THR
1014
A
TYR
1015
n
15
TYR
1015
A
GLY
1016
n
16
GLY
1016
A
ASP
1017
n
17
ASP
1017
A
LYS
1018
n
18
LYS
1018
A
TRP
1019
n
19
TRP
1019
A
LEU
1020
n
20
LEU
1020
A
ASP
1021
n
21
ASP
1021
A
ALA
1022
n
22
ALA
1022
A
LYS
1023
n
23
LYS
1023
A
SER
1024
n
24
SER
1024
A
THR
1025
n
25
THR
1025
A
TRP
1026
n
26
TRP
1026
A
TYR
1027
n
27
TYR
1027
A
ALA
1028
n
28
GLY
1028
A
n
29
1029
A
n
30
1030
A
n
31
1031
A
n
32
1032
A
n
33
1033
A
n
34
1034
A
n
35
1035
A
n
36
1036
A
n
37
1037
A
n
38
1038
A
GLY
1039
n
39
GLY
1039
A
GLY
1040
n
40
GLY
1040
A
ALA
1041
n
41
ALA
1041
A
CYS
1042
n
42
CYS
1042
A
GLY
1043
n
43
GLY
1043
A
TYR
1044
n
44
TYR
1044
A
LYS
1045
n
45
LYS
1045
A
ASP
1046
n
46
ASP
1046
A
VAL
1047
n
47
VAL
1047
A
ASP
1048
n
48
ASP
1048
A
LYS
1049
n
49
LYS
1049
A
PRO
1050
n
50
PRO
1050
A
PRO
1051
n
51
PRO
1051
A
PHE
1052
n
52
PHE
1052
A
SER
1053
n
53
SER
1053
A
GLY
1054
n
54
GLY
1054
A
MET
1055
n
55
MET
1055
A
THR
1056
n
56
THR
1056
A
GLY
1057
n
57
GLY
1057
A
CYS
1058
n
58
CYS
1058
A
GLY
1059
n
59
GLY
1059
A
ASN
1060
n
60
ASN
1060
A
THR
1061
n
61
THR
1061
A
PRO
1062
n
62
PRO
1062
A
ILE
1063
n
63
ILE
1063
A
PHE
1064
n
64
PHE
1064
A
LYS
1065
n
65
LYS
1065
A
SER
1066
n
66
SER
1066
A
GLY
1067
n
67
GLY
1067
A
ARG
1068
n
68
ARG
1068
A
GLY
1069
n
69
GLY
1069
A
CYS
1070
n
70
CYS
1070
A
GLY
1071
n
71
GLY
1071
A
SER
1072
n
72
SER
1072
A
CYS
1073
n
73
CYS
1073
A
PHE
1074
n
74
PHE
1074
A
GLU
1075
n
75
GLU
1075
A
ILE
1076
n
76
ILE
1076
A
LYS
1077
n
77
LYS
1077
A
CYS
1078
n
78
CYS
1078
A
THR
1079
n
79
THR
1079
A
LYS
1080
n
80
LYS
1080
A
PRO
1081
n
81
PRO
1081
A
GLU
1082
n
82
GLU
1082
A
ALA
1083
n
83
ALA
1083
A
CYS
1084
n
84
CYS
1084
A
SER
1085
n
85
SER
1085
A
GLY
1086
n
86
GLY
1086
A
GLU
1087
n
87
GLU
1087
A
PRO
1088
n
88
PRO
1088
A
VAL
1089
n
89
VAL
1089
A
VAL
1090
n
90
VAL
1090
A
VAL
1091
n
91
VAL
1091
A
HIS
1092
n
92
HIS
1092
A
ILE
1093
n
93
ILE
1093
A
THR
1094
n
94
THR
1094
A
ASP
1095
n
95
ASP
1095
A
ASP
1096
n
96
ASP
1096
A
ASN
1097
n
97
ASN
1097
A
GLU
1098
n
98
GLU
1098
A
GLU
1099
n
99
GLU
1099
A
PRO
1100
n
100
PRO
1100
A
ILE
1101
n
101
ILE
1101
A
ALA
1102
n
102
ALA
1102
A
PRO
1103
n
103
PRO
1103
A
TYR
1104
n
104
TYR
1104
A
HIS
1105
n
105
HIS
1105
A
PHE
1106
n
106
PHE
1106
A
ASP
1107
n
107
ASP
1107
A
LEU
1108
n
108
LEU
1108
A
SER
1109
n
109
SER
1109
A
GLY
1110
n
110
GLY
1110
A
HIS
1111
n
111
HIS
1111
A
ALA
1112
n
112
ALA
1112
A
PHE
1113
n
113
PHE
1113
A
GLY
1114
n
114
GLY
1114
A
ALA
1115
n
115
ALA
1115
A
MET
1116
n
116
MET
1116
A
ALA
1117
n
117
ALA
1117
A
LYS
1118
n
118
LYS
1118
A
LYS
1119
n
119
LYS
1119
A
GLY
1120
n
120
GLY
1120
A
ASP
1121
n
121
ASP
1121
A
GLU
1122
n
122
GLU
1122
A
GLN
1123
n
123
GLN
1123
A
LYS
1124
n
124
LYS
1124
A
LEU
1125
n
125
LEU
1125
A
ARG
1126
n
126
ARG
1126
A
SER
1127
n
127
SER
1127
A
ALA
1128
n
128
ALA
1128
A
GLY
1129
n
129
GLY
1129
A
GLU
1130
n
130
GLU
1130
A
LEU
1131
n
131
LEU
1131
A
GLU
1132
n
132
GLU
1132
A
LEU
1133
n
133
LEU
1133
A
GLN
1134
n
134
GLN
1134
A
PHE
1135
n
135
PHE
1135
A
ARG
1136
n
136
ARG
1136
A
ARG
1137
n
137
ARG
1137
A
VAL
1138
n
138
VAL
1138
A
LYS
1139
n
139
LYS
1139
A
CYS
1140
n
140
CYS
1140
A
LYS
1141
n
141
LYS
1141
A
TYR
1142
n
142
TYR
1142
A
PRO
1143
n
143
PRO
1143
A
GLU
1144
n
144
GLU
1144
A
GLY
1145
n
145
GLY
1145
A
THR
1146
n
146
THR
1146
A
LYS
1147
n
147
LYS
1147
A
VAL
1148
n
148
VAL
1148
A
THR
1149
n
149
THR
1149
A
PHE
1150
n
150
PHE
1150
A
HIS
1151
n
151
HIS
1151
A
VAL
1152
n
152
VAL
1152
A
GLU
1153
n
153
GLU
1153
A
LYS
1154
n
154
LYS
1154
A
GLY
1155
n
155
GLY
1155
A
SER
1156
n
156
SER
1156
A
ASN
1157
n
157
ASN
1157
A
PRO
1158
n
158
PRO
1158
A
ASN
1159
n
159
ASN
1159
A
TYR
1160
n
160
TYR
1160
A
LEU
1161
n
161
LEU
1161
A
ALA
1162
n
162
ALA
1162
A
LEU
1163
n
163
LEU
1163
A
LEU
1164
n
164
LEU
1164
A
VAL
1165
n
165
VAL
1165
A
LYS
1166
n
166
LYS
1166
A
TYR
1167
n
167
TYR
1167
A
VAL
1168
n
168
VAL
1168
A
ASN
1169
n
169
ASN
1169
A
GLY
1170
n
170
GLY
1170
A
ASP
1171
n
171
ASP
1171
A
GLY
1172
n
172
GLY
1172
A
ASP
1173
n
173
ASP
1173
A
VAL
1174
n
174
VAL
1174
A
VAL
1175
n
175
VAL
1175
A
ALA
1176
n
176
ALA
1176
A
VAL
1177
n
177
VAL
1177
A
ASP
1178
n
178
ASP
1178
A
ILE
1179
n
179
ILE
1179
A
LYS
1180
n
180
LYS
1180
A
GLU
1181
n
181
GLU
1181
A
LYS
1182
n
182
LYS
1182
A
GLY
1183
n
183
GLY
1183
A
LYS
1184
n
184
LYS
1184
A
ASP
1185
n
185
ASP
1185
A
LYS
1186
n
186
LYS
1186
A
TRP
1187
n
187
TRP
1187
A
ILE
1188
n
188
ILE
1188
A
GLU
1189
n
189
GLU
1189
A
LEU
1190
n
190
LEU
1190
A
LYS
1191
n
191
LYS
1191
A
GLU
1192
n
192
GLU
1192
A
SER
1193
n
193
SER
1193
A
TRP
1194
n
194
TRP
1194
A
GLY
1195
n
195
GLY
1195
A
ALA
1196
n
196
ALA
1196
A
ILE
1197
n
197
ILE
1197
A
TRP
1198
n
198
TRP
1198
A
ARG
1199
n
199
ARG
1199
A
ILE
1200
n
200
ILE
1200
A
ASP
1201
n
201
ASP
1201
A
THR
1202
n
202
THR
1202
A
PRO
1203
n
203
PRO
1203
A
ASP
1204
n
204
ASP
1204
A
LYS
1205
n
205
LYS
1205
A
LEU
1206
n
206
LEU
1206
A
THR
1207
n
207
THR
1207
A
GLY
1208
n
208
GLY
1208
A
PRO
1209
n
209
PRO
1209
A
PHE
1210
n
210
PHE
1210
A
THR
1211
n
211
THR
1211
A
VAL
1212
n
212
VAL
1212
A
ARG
1213
n
213
ARG
1213
A
TYR
1214
n
214
TYR
1214
A
THR
1215
n
215
THR
1215
A
THR
1216
n
216
THR
1216
A
GLU
1217
n
217
GLU
1217
A
GLY
1218
n
218
GLY
1218
A
GLY
1219
n
219
GLY
1219
A
THR
1220
n
220
THR
1220
A
LYS
1221
n
221
LYS
1221
A
THR
1222
n
222
THR
1222
A
GLU
1223
n
223
GLU
1223
A
ALA
1224
n
224
ALA
1224
A
GLU
1225
n
225
GLU
1225
A
ASP
1226
n
226
ASP
1226
A
VAL
1227
n
227
VAL
1227
A
ILE
1228
n
228
ILE
1228
A
PRO
1229
n
229
PRO
1229
A
GLU
1230
n
230
GLU
1230
A
GLY
1231
n
231
GLY
1231
A
TRP
1232
n
232
TRP
1232
A
LYS
1233
n
233
LYS
1233
A
ALA
1234
n
234
ALA
1234
A
ASP
1235
n
235
ASP
1235
A
THR
1236
n
236
THR
1236
A
SER
1237
n
237
SER
1237
A
TYR
1238
n
238
TYR
1238
A
GLU
1239
n
239
GLU
1239
A
SER
1240
n
240
SER
1240
A
n
241
1241
A
n
1
2001
B
n
2
2002
B
PRO
2003
n
3
PRO
2003
B
LYS
2004
n
4
LYS
2004
B
VAL
2005
n
5
VAL
2005
B
PRO
2006
n
6
PRO
2006
B
PRO
2007
n
7
PRO
2007
B
GLY
2008
n
8
GLY
2008
B
PRO
2009
n
9
PRO
2009
B
ASN
2010
n
10
ASN
2010
B
ILE
2011
n
11
ILE
2011
B
THR
2012
n
12
THR
2012
B
ALA
2013
n
13
ALA
2013
B
THR
2014
n
14
THR
2014
B
TYR
2015
n
15
TYR
2015
B
GLY
2016
n
16
GLY
2016
B
ASP
2017
n
17
ASP
2017
B
LYS
2018
n
18
LYS
2018
B
TRP
2019
n
19
TRP
2019
B
LEU
2020
n
20
LEU
2020
B
ASP
2021
n
21
ASP
2021
B
ALA
2022
n
22
ALA
2022
B
LYS
2023
n
23
LYS
2023
B
SER
2024
n
24
SER
2024
B
THR
2025
n
25
THR
2025
B
TRP
2026
n
26
TRP
2026
B
TYR
2027
n
27
TYR
2027
B
ALA
2028
n
28
GLY
2028
B
n
29
2029
B
n
30
2030
B
n
31
2031
B
n
32
2032
B
n
33
2033
B
n
34
2034
B
n
35
2035
B
n
36
2036
B
n
37
2037
B
n
38
2038
B
GLY
2039
n
39
GLY
2039
B
GLY
2040
n
40
GLY
2040
B
ALA
2041
n
41
ALA
2041
B
CYS
2042
n
42
CYS
2042
B
GLY
2043
n
43
GLY
2043
B
TYR
2044
n
44
TYR
2044
B
LYS
2045
n
45
LYS
2045
B
ASP
2046
n
46
ASP
2046
B
VAL
2047
n
47
VAL
2047
B
ASP
2048
n
48
ASP
2048
B
LYS
2049
n
49
LYS
2049
B
PRO
2050
n
50
PRO
2050
B
PRO
2051
n
51
PRO
2051
B
PHE
2052
n
52
PHE
2052
B
SER
2053
n
53
SER
2053
B
GLY
2054
n
54
GLY
2054
B
MET
2055
n
55
MET
2055
B
THR
2056
n
56
THR
2056
B
GLY
2057
n
57
GLY
2057
B
CYS
2058
n
58
CYS
2058
B
GLY
2059
n
59
GLY
2059
B
ASN
2060
n
60
ASN
2060
B
THR
2061
n
61
THR
2061
B
PRO
2062
n
62
PRO
2062
B
ILE
2063
n
63
ILE
2063
B
PHE
2064
n
64
PHE
2064
B
LYS
2065
n
65
LYS
2065
B
SER
2066
n
66
SER
2066
B
GLY
2067
n
67
GLY
2067
B
ARG
2068
n
68
ARG
2068
B
GLY
2069
n
69
GLY
2069
B
CYS
2070
n
70
CYS
2070
B
GLY
2071
n
71
GLY
2071
B
SER
2072
n
72
SER
2072
B
CYS
2073
n
73
CYS
2073
B
PHE
2074
n
74
PHE
2074
B
GLU
2075
n
75
GLU
2075
B
ILE
2076
n
76
ILE
2076
B
LYS
2077
n
77
LYS
2077
B
CYS
2078
n
78
CYS
2078
B
THR
2079
n
79
THR
2079
B
LYS
2080
n
80
LYS
2080
B
PRO
2081
n
81
PRO
2081
B
GLU
2082
n
82
GLU
2082
B
ALA
2083
n
83
ALA
2083
B
CYS
2084
n
84
CYS
2084
B
SER
2085
n
85
SER
2085
B
GLY
2086
n
86
GLY
2086
B
GLU
2087
n
87
GLU
2087
B
PRO
2088
n
88
PRO
2088
B
VAL
2089
n
89
VAL
2089
B
VAL
2090
n
90
VAL
2090
B
VAL
2091
n
91
VAL
2091
B
HIS
2092
n
92
HIS
2092
B
ILE
2093
n
93
ILE
2093
B
THR
2094
n
94
THR
2094
B
ASP
2095
n
95
ASP
2095
B
ASP
2096
n
96
ASP
2096
B
ASN
2097
n
97
ASN
2097
B
GLU
2098
n
98
GLU
2098
B
GLU
2099
n
99
GLU
2099
B
PRO
2100
n
100
PRO
2100
B
ILE
2101
n
101
ILE
2101
B
ALA
2102
n
102
ALA
2102
B
PRO
2103
n
103
PRO
2103
B
TYR
2104
n
104
TYR
2104
B
HIS
2105
n
105
HIS
2105
B
PHE
2106
n
106
PHE
2106
B
ASP
2107
n
107
ASP
2107
B
LEU
2108
n
108
LEU
2108
B
SER
2109
n
109
SER
2109
B
GLY
2110
n
110
GLY
2110
B
HIS
2111
n
111
HIS
2111
B
ALA
2112
n
112
ALA
2112
B
PHE
2113
n
113
PHE
2113
B
GLY
2114
n
114
GLY
2114
B
ALA
2115
n
115
ALA
2115
B
MET
2116
n
116
MET
2116
B
ALA
2117
n
117
ALA
2117
B
LYS
2118
n
118
LYS
2118
B
LYS
2119
n
119
LYS
2119
B
GLY
2120
n
120
GLY
2120
B
ASP
2121
n
121
ASP
2121
B
GLU
2122
n
122
GLU
2122
B
GLN
2123
n
123
GLN
2123
B
LYS
2124
n
124
LYS
2124
B
LEU
2125
n
125
LEU
2125
B
ARG
2126
n
126
ARG
2126
B
SER
2127
n
127
SER
2127
B
ALA
2128
n
128
ALA
2128
B
GLY
2129
n
129
GLY
2129
B
GLU
2130
n
130
GLU
2130
B
LEU
2131
n
131
LEU
2131
B
GLU
2132
n
132
GLU
2132
B
LEU
2133
n
133
LEU
2133
B
GLN
2134
n
134
GLN
2134
B
PHE
2135
n
135
PHE
2135
B
ARG
2136
n
136
ARG
2136
B
ARG
2137
n
137
ARG
2137
B
VAL
2138
n
138
VAL
2138
B
LYS
2139
n
139
LYS
2139
B
CYS
2140
n
140
CYS
2140
B
LYS
2141
n
141
LYS
2141
B
TYR
2142
n
142
TYR
2142
B
PRO
2143
n
143
PRO
2143
B
GLU
2144
n
144
GLU
2144
B
GLY
2145
n
145
GLY
2145
B
THR
2146
n
146
THR
2146
B
LYS
2147
n
147
LYS
2147
B
VAL
2148
n
148
VAL
2148
B
THR
2149
n
149
THR
2149
B
PHE
2150
n
150
PHE
2150
B
HIS
2151
n
151
HIS
2151
B
VAL
2152
n
152
VAL
2152
B
GLU
2153
n
153
GLU
2153
B
LYS
2154
n
154
LYS
2154
B
GLY
2155
n
155
GLY
2155
B
SER
2156
n
156
SER
2156
B
ASN
2157
n
157
ASN
2157
B
PRO
2158
n
158
PRO
2158
B
ASN
2159
n
159
ASN
2159
B
TYR
2160
n
160
TYR
2160
B
LEU
2161
n
161
LEU
2161
B
ALA
2162
n
162
ALA
2162
B
LEU
2163
n
163
LEU
2163
B
LEU
2164
n
164
LEU
2164
B
VAL
2165
n
165
VAL
2165
B
LYS
2166
n
166
LYS
2166
B
TYR
2167
n
167
TYR
2167
B
VAL
2168
n
168
VAL
2168
B
ASN
2169
n
169
ASN
2169
B
GLY
2170
n
170
GLY
2170
B
ASP
2171
n
171
ASP
2171
B
GLY
2172
n
172
GLY
2172
B
ASP
2173
n
173
ASP
2173
B
VAL
2174
n
174
VAL
2174
B
VAL
2175
n
175
VAL
2175
B
ALA
2176
n
176
ALA
2176
B
VAL
2177
n
177
VAL
2177
B
ASP
2178
n
178
ASP
2178
B
ILE
2179
n
179
ILE
2179
B
LYS
2180
n
180
LYS
2180
B
GLU
2181
n
181
GLU
2181
B
LYS
2182
n
182
LYS
2182
B
GLY
2183
n
183
GLY
2183
B
LYS
2184
n
184
LYS
2184
B
ASP
2185
n
185
ASP
2185
B
LYS
2186
n
186
LYS
2186
B
TRP
2187
n
187
TRP
2187
B
ILE
2188
n
188
ILE
2188
B
GLU
2189
n
189
GLU
2189
B
LEU
2190
n
190
LEU
2190
B
LYS
2191
n
191
LYS
2191
B
GLU
2192
n
192
GLU
2192
B
SER
2193
n
193
SER
2193
B
TRP
2194
n
194
TRP
2194
B
GLY
2195
n
195
GLY
2195
B
ALA
2196
n
196
ALA
2196
B
ILE
2197
n
197
ILE
2197
B
TRP
2198
n
198
TRP
2198
B
ARG
2199
n
199
ARG
2199
B
ILE
2200
n
200
ILE
2200
B
ASP
2201
n
201
ASP
2201
B
THR
2202
n
202
THR
2202
B
PRO
2203
n
203
PRO
2203
B
ASP
2204
n
204
ASP
2204
B
LYS
2205
n
205
LYS
2205
B
LEU
2206
n
206
LEU
2206
B
THR
2207
n
207
THR
2207
B
GLY
2208
n
208
GLY
2208
B
PRO
2209
n
209
PRO
2209
B
PHE
2210
n
210
PHE
2210
B
THR
2211
n
211
THR
2211
B
VAL
2212
n
212
VAL
2212
B
ARG
2213
n
213
ARG
2213
B
TYR
2214
n
214
TYR
2214
B
THR
2215
n
215
THR
2215
B
THR
2216
n
216
THR
2216
B
GLU
2217
n
217
GLU
2217
B
GLY
2218
n
218
GLY
2218
B
GLY
2219
n
219
GLY
2219
B
THR
2220
n
220
THR
2220
B
LYS
2221
n
221
LYS
2221
B
THR
2222
n
222
THR
2222
B
GLU
2223
n
223
GLU
2223
B
ALA
2224
n
224
ALA
2224
B
GLU
2225
n
225
GLU
2225
B
ASP
2226
n
226
ASP
2226
B
VAL
2227
n
227
VAL
2227
B
ILE
2228
n
228
ILE
2228
B
PRO
2229
n
229
PRO
2229
B
GLU
2230
n
230
GLU
2230
B
GLY
2231
n
231
GLY
2231
B
TRP
2232
n
232
TRP
2232
B
LYS
2233
n
233
LYS
2233
B
ALA
2234
n
234
ALA
2234
B
ASP
2235
n
235
ASP
2235
B
THR
2236
n
236
THR
2236
B
SER
2237
n
237
SER
2237
B
TYR
2238
n
238
TYR
2238
B
GLU
2239
n
239
GLU
2239
B
SER
2240
n
240
SER
2240
B
n
241
2241
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
ASN
1010
GLYCOSYLATION SITE
A
ASN
10
ASN
B
ASN
2010
GLYCOSYLATION SITE
B
ASN
10
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
1023
A
N
LYS
23
A
O
PHE
1106
A
O
PHE
106
A
O
ASP
1107
A
O
ASP
107
A
N
CYS
1058
A
N
CYS
58
A
N
GLY
1059
A
N
GLY
59
A
O
ASP
1095
A
O
ASP
95
A
O
VAL
1091
A
O
VAL
91
A
N
PHE
1074
A
N
PHE
74
A
N
GLU
1075
A
N
GLU
75
A
O
ARG
1136
A
O
ARG
136
A
O
PHE
1135
A
O
PHE
135
A
N
LEU
1020
A
N
LEU
20
A
O
ILE
1200
A
O
ILE
200
A
N
LEU
1161
A
N
LEU
161
A
O
LYS
1166
A
O
LYS
166
A
N
THR
1149
A
N
THR
149
A
N
VAL
1152
A
N
VAL
152
A
O
THR
1236
A
O
THR
236
A
O
ILE
1188
A
O
ILE
188
A
N
ILE
1179
A
N
ILE
179
A
N
ASP
1178
A
N
ASP
178
A
O
ARG
1213
A
O
ARG
213
A
N
VAL
1212
A
N
VAL
212
A
O
ALA
1224
A
O
ALA
224
B
N
THR
2025
B
N
THR
25
B
O
LEU
2108
B
O
LEU
108
B
O
ASP
2107
B
O
ASP
107
B
N
CYS
2058
B
N
CYS
58
B
N
GLY
2059
B
N
GLY
59
B
O
ASP
2095
B
O
ASP
95
B
O
VAL
2091
B
O
VAL
91
B
N
PHE
2074
B
N
PHE
74
B
N
GLU
2075
B
N
GLU
75
B
O
ARG
2136
B
O
ARG
136
B
O
PHE
2135
B
O
PHE
135
B
N
LEU
2020
B
N
LEU
20
B
O
ILE
2200
B
O
ILE
200
B
N
LEU
2161
B
N
LEU
161
B
O
LYS
2166
B
O
LYS
166
B
N
THR
2149
B
N
THR
149
B
N
PHE
2150
B
N
PHE
150
B
O
TYR
2238
B
O
TYR
238
B
O
ILE
2188
B
O
ILE
188
B
N
ILE
2179
B
N
ILE
179
B
N
ASP
2178
B
N
ASP
178
B
O
ARG
2213
B
O
ARG
213
B
N
VAL
2212
B
N
VAL
212
B
O
ALA
2224
B
O
ALA
224
1
A
ALA
1001
A
ALA
1
1
Y
1
A
ILE
1002
A
ILE
2
1
Y
1
A
LYS
1029
A
LYS
29
1
Y
1
A
PRO
1030
A
PRO
30
1
Y
1
A
THR
1031
A
THR
31
1
Y
1
A
GLY
1032
A
GLY
32
1
Y
1
A
ALA
1033
A
ALA
33
1
Y
1
A
GLY
1034
A
GLY
34
1
Y
1
A
PRO
1035
A
PRO
35
1
Y
1
A
LYS
1036
A
LYS
36
1
Y
1
A
ASP
1037
A
ASP
37
1
Y
1
A
ASN
1038
A
ASN
38
1
Y
1
A
LYS
1241
A
LYS
241
1
Y
1
B
ALA
2001
B
ALA
1
1
Y
1
B
ILE
2002
B
ILE
2
1
Y
1
B
LYS
2029
B
LYS
29
1
Y
1
B
PRO
2030
B
PRO
30
1
Y
1
B
THR
2031
B
THR
31
1
Y
1
B
GLY
2032
B
GLY
32
1
Y
1
B
ALA
2033
B
ALA
33
1
Y
1
B
GLY
2034
B
GLY
34
1
Y
1
B
PRO
2035
B
PRO
35
1
Y
1
B
LYS
2036
B
LYS
36
1
Y
1
B
ASP
2037
B
ASP
37
1
Y
1
B
ASN
2038
B
ASN
38
1
Y
1
B
LYS
2241
B
LYS
241
1
Y
1
9.88
1.10
114.20
124.08
A
A
A
CA
CB
SG
CYS
CYS
CYS
1058
1058
1058
N
1
9.10
1.10
114.20
123.30
B
B
B
CA
CB
SG
CYS
CYS
CYS
2058
2058
2058
N
1
A
A
CB
SG
CYS
CYS
1058
1058
0.104
0.017
1.818
1.922
N
1
A
LYS
1004
71.64
-125.09
1
A
ASP
1017
-161.87
8.94
1
A
LYS
1045
-101.94
-78.89
1
A
THR
1061
-20.26
-48.19
1
A
SER
1066
59.12
12.41
1
A
SER
1072
-27.15
130.67
1
A
LYS
1080
-50.76
-94.85
1
A
GLU
1099
-116.54
70.19
1
A
LYS
1119
-36.89
114.95
1
A
ASN
1169
-66.69
14.98
1
A
LYS
1182
-48.16
95.71
1
A
LEU
1206
-103.39
67.81
1
A
THR
1207
-89.99
-81.02
1
A
THR
1220
-64.52
98.97
1
A
ASP
1226
39.61
46.09
1
B
ASP
2017
-162.11
9.36
1
B
LYS
2045
-101.46
-78.58
1
B
THR
2061
-21.33
-46.78
1
B
SER
2066
58.33
13.39
1
B
SER
2072
-26.04
131.50
1
B
LYS
2080
-52.04
-95.18
1
B
GLU
2099
-116.67
69.88
1
B
LYS
2119
-37.31
115.96
1
B
ASN
2169
-66.30
15.19
1
B
LYS
2182
-48.29
94.38
1
B
LEU
2206
-103.59
68.16
1
B
THR
2207
-89.84
-80.73
1
B
THR
2220
-64.15
98.57
protein_rep.param
protein.top
cis_peptide.param
45.0
0.267
0.010
0.239
0.243
0.243
2.9
20.0
664
12934
12934
5.1
98.6
RANDOM
1
througout
1.0
MAD
Engh & Huber
flat model
10.04
0.271776
0.47
0.40
5.00
0.49
0.47
2.9
20.0
0
3540
28
0
3512
0.008
1.55
25.0
0.84
2.57
1.50
4.33
2.00
3.96
2.00
6.51
2.50
0.325
0.035
0.298
3.0
61
1932
1213
6
5.1
95
2.9
20.0
1N10
12934
12934
0.0
0.0
0.036
1
39.6000
4.300
98.6
0.14
2.9
3.0
8.2
1
84.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
1.0
Pollen allergen Phl p 1
Crystal Structure of Phl p 1, a Major Timothy Grass Pollen Allergen
1
N
N
1
N
N
2
N
N
2
N
N
The biological assembly is a monomer
A
ASN
1060
A
ASN
60
HELX_P
A
LYS
1065
A
LYS
65
1
1
6
A
SER
1066
A
SER
66
HELX_P
A
ARG
1068
A
ARG
68
5
2
3
A
GLY
1110
A
GLY
110
HELX_P
A
ALA
1115
A
ALA
115
1
3
6
A
ASP
1121
A
ASP
121
HELX_P
A
SER
1127
A
SER
127
1
4
7
B
ASN
2060
B
ASN
60
HELX_P
B
LYS
2065
B
LYS
65
1
5
6
B
SER
2066
B
SER
66
HELX_P
B
ARG
2068
B
ARG
68
5
6
3
B
GLY
2110
B
GLY
110
HELX_P
B
ALA
2115
B
ALA
115
1
7
6
B
ASP
2121
B
ASP
121
HELX_P
B
SER
2127
B
SER
127
1
8
7
B
SER
2193
B
SER
193
HELX_P
B
ILE
2197
B
ILE
197
5
9
5
disulf
2.027
A
CYS
1042
A
SG
CYS
42
1_555
A
CYS
1070
A
SG
CYS
70
1_555
disulf
2.030
A
CYS
1073
A
SG
CYS
73
1_555
A
CYS
1140
A
SG
CYS
140
1_555
disulf
2.018
A
CYS
1078
A
SG
CYS
78
1_555
A
CYS
1084
A
SG
CYS
84
1_555
disulf
2.035
B
CYS
2042
B
SG
CYS
42
1_555
B
CYS
2070
B
SG
CYS
70
1_555
disulf
2.040
B
CYS
2073
B
SG
CYS
73
1_555
B
CYS
2140
B
SG
CYS
140
1_555
disulf
2.007
B
CYS
2078
B
SG
CYS
78
1_555
B
CYS
2084
B
SG
CYS
84
1_555
covale
1.469
one
N-Glycosylation
A
ASN
1010
A
ND2
ASN
10
1_555
A
NAG
3001
C
C1
NAG
1_555
covale
1.459
one
N-Glycosylation
B
ASN
2010
B
ND2
ASN
10
1_555
B
NAG
3002
D
C1
NAG
1_555
ALLERGEN
Plant allergen, phl p 1, expansin, immunoglobulin-like fold, double-psi beta barrel, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, ALLERGEN
A
PRO
1050
A
PRO
50
1
A
PRO
1051
A
PRO
51
0.04
B
PRO
2050
B
PRO
50
1
B
PRO
2051
B
PRO
51
0.28
MPAP1_PHLPR
UNP
1
23
P43213
GIPKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK
PEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNY
LALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES
K
23
263
1N10
1001
1241
P43213
A
1
1
241
23
263
1N10
2001
2241
P43213
B
1
1
241
1
GLY
SEE REMARK 999
ALA
1001
1N10
A
P43213
UNP
23
1
2
GLY
SEE REMARK 999
ALA
2001
1N10
B
P43213
UNP
23
1
7
4
4
7
4
4
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
1020
A
LEU
20
A
TYR
1027
A
TYR
27
A
HIS
1105
A
HIS
105
A
SER
1109
A
SER
109
A
THR
1056
A
THR
56
A
GLY
1059
A
GLY
59
A
VAL
1089
A
VAL
89
A
ASP
1096
A
ASP
96
A
CYS
1073
A
CYS
73
A
CYS
1078
A
CYS
78
A
LEU
1131
A
LEU
131
A
ARG
1137
A
ARG
137
A
LEU
1020
A
LEU
20
A
TYR
1027
A
TYR
27
A
TRP
1198
A
TRP
198
A
ASP
1201
A
ASP
201
A
TYR
1160
A
TYR
160
A
LYS
1166
A
LYS
166
A
THR
1149
A
THR
149
A
VAL
1152
A
VAL
152
A
THR
1236
A
THR
236
A
GLU
1239
A
GLU
239
A
ILE
1188
A
ILE
188
A
GLU
1189
A
GLU
189
A
VAL
1174
A
VAL
174
A
GLU
1181
A
GLU
181
A
PHE
1210
A
PHE
210
A
THR
1216
A
THR
216
A
LYS
1221
A
LYS
221
A
ILE
1228
A
ILE
228
B
LEU
2020
B
LEU
20
B
TYR
2027
B
TYR
27
B
HIS
2105
B
HIS
105
B
SER
2109
B
SER
109
B
THR
2056
B
THR
56
B
GLY
2059
B
GLY
59
B
VAL
2089
B
VAL
89
B
ASP
2096
B
ASP
96
B
CYS
2073
B
CYS
73
B
CYS
2078
B
CYS
78
B
LEU
2131
B
LEU
131
B
ARG
2137
B
ARG
137
B
LEU
2020
B
LEU
20
B
TYR
2027
B
TYR
27
B
TRP
2198
B
TRP
198
B
ASP
2201
B
ASP
201
B
TYR
2160
B
TYR
160
B
LYS
2166
B
LYS
166
B
THR
2149
B
THR
149
B
VAL
2152
B
VAL
152
B
THR
2236
B
THR
236
B
GLU
2239
B
GLU
239
B
ILE
2188
B
ILE
188
B
GLU
2189
B
GLU
189
B
VAL
2174
B
VAL
174
B
GLU
2181
B
GLU
181
B
PHE
2210
B
PHE
210
B
THR
2216
B
THR
216
B
LYS
2221
B
LYS
221
B
ILE
2228
B
ILE
228
19
P 21 21 21