1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nameki, N.
Kigawa, T.
Koshiba, S.
Kobayashi, N.
Tochio, N.
Inoue, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
14
756
764
10.1110/ps.04975305
15689505
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
2005
10.2210/pdb1n27/pdb
pdb_00001n27
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10649.930
Hepatoma-derived growth factor, related protein 3
PWWP domain
1
man
polymer
no
no
GSSGSSGEYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKG
FNEGLWEIENSGPSSG
GSSGSSGEYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKG
FNEGLWEIENSGPSSG
A
mmt007017903.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
Cell-free protein synthesis system
4632410H03
10090
Mus musculus
PLASMID
P020408-01
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-12-23
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
RCSB
Y
PDBJ
2002-10-22
REL
structures with the least restraint violations,structures with the lowest energy,target function
100
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120mM
6.0
ambient
298
K
torsion angle dynamics, restrained molecular dynamics
1
lowest energy
0.7mM PWWP domain U-15N,13C; 20mM phosphate buffer NA; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Delaglio, F.
processing
NMRPipe
20020425
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.613
Guentert, P.
structure solution
CYANA
1.0.6
Koradi, R., Billeter, M., Guentert, P.
refinement
OPALp
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
GLU
8
n
8
GLU
8
A
TYR
9
n
9
TYR
9
A
LYS
10
n
10
LYS
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
ASP
13
n
13
ASP
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
PHE
16
n
16
PHE
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
MET
19
n
19
MET
19
A
LYS
20
n
20
LYS
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
PRO
23
n
23
PRO
23
A
HIS
24
n
24
HIS
24
A
TRP
25
n
25
TRP
25
A
PRO
26
n
26
PRO
26
A
ALA
27
n
27
ALA
27
A
ARG
28
n
28
ARG
28
A
ILE
29
n
29
ILE
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
LEU
32
n
32
LEU
32
A
PRO
33
n
33
PRO
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ALA
36
n
36
ALA
36
A
VAL
37
n
37
VAL
37
A
LYS
38
n
38
LYS
38
A
PRO
39
n
39
PRO
39
A
PRO
40
n
40
PRO
40
A
ALA
41
n
41
ALA
41
A
ASN
42
n
42
ASN
42
A
LYS
43
n
43
LYS
43
A
TYR
44
n
44
TYR
44
A
PRO
45
n
45
PRO
45
A
ILE
46
n
46
ILE
46
A
PHE
47
n
47
PHE
47
A
PHE
48
n
48
PHE
48
A
PHE
49
n
49
PHE
49
A
GLY
50
n
50
GLY
50
A
THR
51
n
51
THR
51
A
HIS
52
n
52
HIS
52
A
GLU
53
n
53
GLU
53
A
THR
54
n
54
THR
54
A
ALA
55
n
55
ALA
55
A
PHE
56
n
56
PHE
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
PRO
59
n
59
PRO
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
LEU
62
n
62
LEU
62
A
PHE
63
n
63
PHE
63
A
PRO
64
n
64
PRO
64
A
TYR
65
n
65
TYR
65
A
LYS
66
n
66
LYS
66
A
GLU
67
n
67
GLU
67
A
TYR
68
n
68
TYR
68
A
LYS
69
n
69
LYS
69
A
ASP
70
n
70
ASP
70
A
LYS
71
n
71
LYS
71
A
PHE
72
n
72
PHE
72
A
GLY
73
n
73
GLY
73
A
LYS
74
n
74
LYS
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
LYS
77
n
77
LYS
77
A
ARG
78
n
78
ARG
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
ASN
82
n
82
ASN
82
A
GLU
83
n
83
GLU
83
A
GLY
84
n
84
GLY
84
A
LEU
85
n
85
LEU
85
A
TRP
86
n
86
TRP
86
A
GLU
87
n
87
GLU
87
A
ILE
88
n
88
ILE
88
A
GLU
89
n
89
GLU
89
A
ASN
90
n
90
ASN
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
PRO
93
n
93
PRO
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
GLY
96
n
96
GLY
96
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
55
A
O
ALA
55
A
N
ILE
46
A
N
ILE
46
A
N
PHE
47
A
N
PHE
47
A
O
ARG
28
A
O
ARG
28
A
O
ALA
27
A
O
ALA
27
A
N
VAL
15
A
N
VAL
15
A
N
PHE
16
A
N
PHE
16
A
O
PHE
63
A
O
PHE
63
7
A
A
SER
GLY
95
96
135.96
10
A
A
ASP
GLU
30
31
147.44
15
A
A
LYS
GLY
79
80
-143.77
16
A
A
ASN
LYS
76
77
-149.48
19
A
A
GLY
GLU
7
8
143.24
20
A
A
SER
GLY
95
96
-146.66
3
A
ARG
78
0.076
SIDE CHAIN
4
A
ARG
28
0.126
SIDE CHAIN
7
A
ARG
28
0.079
SIDE CHAIN
8
A
TYR
9
0.071
SIDE CHAIN
8
A
ARG
78
0.119
SIDE CHAIN
10
A
ARG
78
0.106
SIDE CHAIN
11
A
ARG
78
0.076
SIDE CHAIN
13
A
ARG
28
0.078
SIDE CHAIN
13
A
TYR
44
0.090
SIDE CHAIN
14
A
ARG
78
0.078
SIDE CHAIN
16
A
TYR
68
0.069
SIDE CHAIN
19
A
ARG
28
0.096
SIDE CHAIN
19
A
TYR
68
0.076
SIDE CHAIN
18
-3.31
0.50
120.30
116.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
28
28
28
N
1
A
GLU
8
-169.58
109.22
1
A
LYS
20
-64.50
93.46
1
A
HIS
24
-64.96
92.33
1
A
ALA
36
-97.90
-159.74
1
A
ASN
42
97.92
-26.56
1
A
LYS
79
61.98
143.35
1
A
SER
95
57.65
2.26
2
A
SER
2
-140.95
-51.79
2
A
ASP
30
-78.21
-164.08
2
A
GLU
31
-125.74
-167.75
2
A
SER
75
-58.04
99.03
3
A
SER
2
37.60
43.96
3
A
GLU
8
56.00
94.71
3
A
GLU
34
-54.65
103.77
3
A
ALA
36
-68.50
-168.79
3
A
ASN
42
-153.79
21.35
3
A
HIS
52
58.72
11.91
3
A
GLU
67
-72.86
-77.73
3
A
SER
75
-57.52
107.45
4
A
SER
2
-150.84
-52.49
4
A
SER
3
-58.17
107.54
4
A
SER
5
-169.85
114.57
4
A
HIS
24
-60.25
96.93
4
A
ASN
42
-160.33
9.83
4
A
PRO
45
-67.26
95.31
4
A
PHE
49
-47.58
150.25
4
A
HIS
52
53.11
16.53
4
A
GLU
67
-70.39
-72.25
4
A
SER
94
80.97
126.97
5
A
SER
5
-140.81
-51.50
5
A
SER
6
63.36
170.20
5
A
GLU
8
-142.25
-149.05
5
A
HIS
24
-55.19
107.16
5
A
GLU
31
-126.68
-161.65
5
A
HIS
52
55.27
11.56
5
A
ASN
76
-135.27
-96.99
5
A
LYS
77
-160.36
-20.93
5
A
ASN
90
-103.96
-71.34
6
A
TYR
9
-48.34
155.86
6
A
ALA
11
-58.30
103.25
6
A
HIS
24
-59.57
103.31
6
A
ASN
42
-174.92
0.97
6
A
HIS
52
58.12
14.59
7
A
SER
2
-170.99
109.66
7
A
SER
3
-76.59
48.40
7
A
SER
5
59.59
92.75
7
A
SER
6
59.22
166.57
7
A
ALA
41
-43.74
91.96
7
A
ASN
42
33.64
58.19
7
A
SER
75
-56.90
97.77
7
A
SER
95
-155.01
-53.57
8
A
SER
2
57.19
157.91
8
A
SER
3
50.48
-154.81
8
A
SER
6
-160.83
-87.40
8
A
GLU
34
-69.97
21.87
8
A
PRO
45
-68.45
91.63
8
A
SER
75
-59.58
105.35
8
A
PRO
93
-76.98
25.84
9
A
SER
2
62.50
164.16
9
A
SER
3
-169.06
-53.00
9
A
GLU
8
74.14
88.07
9
A
HIS
24
-64.02
97.04
9
A
ASN
42
83.55
1.19
9
A
ASN
90
-81.69
43.17
9
A
SER
95
-146.00
-21.26
10
A
SER
2
-162.33
107.15
10
A
HIS
24
-62.53
89.75
10
A
ASP
30
-83.91
-156.42
10
A
SER
94
67.90
-41.53
11
A
GLU
8
68.25
165.65
11
A
HIS
24
-63.07
97.61
11
A
VAL
37
-68.27
-173.11
11
A
PRO
45
-66.18
94.57
11
A
ASN
76
-142.12
-6.01
11
A
LYS
77
121.64
-40.00
11
A
SER
91
-68.92
74.60
11
A
SER
94
65.81
-25.83
11
A
SER
95
45.79
29.06
12
A
SER
2
63.87
-175.55
12
A
SER
3
57.59
-174.04
12
A
HIS
24
-67.09
98.42
12
A
GLU
31
-104.04
-169.71
12
A
PRO
59
-66.81
5.71
12
A
SER
94
-171.75
-78.06
13
A
SER
5
63.72
-70.93
13
A
HIS
24
-62.59
88.09
13
A
GLU
34
-69.75
24.13
13
A
VAL
37
-35.19
131.16
13
A
HIS
52
58.09
3.15
13
A
GLU
67
-74.02
-71.21
14
A
SER
5
-169.34
-62.50
14
A
LYS
71
-97.76
-62.48
14
A
SER
95
-137.85
-79.30
15
A
SER
3
-160.99
50.68
15
A
GLU
31
-101.74
-163.91
15
A
GLU
67
-92.90
-64.49
15
A
SER
75
-54.40
103.54
15
A
ASN
90
-96.04
39.18
16
A
SER
2
55.00
-91.79
16
A
SER
6
-171.65
-174.57
16
A
GLU
8
10.19
98.02
16
A
HIS
24
-67.18
92.66
16
A
SER
75
-61.62
79.79
16
A
LYS
77
-91.97
41.96
17
A
SER
2
50.08
82.22
17
A
SER
5
-77.06
-83.20
17
A
ASN
42
-175.08
6.42
18
A
SER
2
-75.11
-161.75
18
A
GLU
8
109.48
141.32
18
A
LYS
20
-80.74
44.28
18
A
PRO
23
-68.57
-178.20
18
A
LYS
38
-28.22
108.94
18
A
ASN
42
131.67
-4.48
18
A
HIS
52
55.56
18.01
18
A
ARG
78
44.50
-126.10
19
A
HIS
24
-69.86
94.12
19
A
PRO
33
-81.22
-152.94
19
A
GLU
34
-66.78
-138.45
19
A
ALA
36
-61.35
-179.83
19
A
ASN
42
-173.82
-8.80
19
A
PHE
49
-49.18
151.01
19
A
SER
95
53.25
-151.90
20
A
SER
3
-135.45
-37.57
20
A
GLU
8
62.52
159.26
20
A
HIS
24
-66.70
96.31
20
A
ALA
36
-75.05
-167.50
20
A
ASN
42
-163.47
7.52
20
A
ASN
90
-76.03
-74.28
20
A
SER
91
48.36
73.20
20
A
SER
95
103.76
135.72
Solution structure of the PWWP domain of mouse Hepatoma-derived growth factor, related protein 3
1
N
N
A
PRO
59
A
PRO
59
HELX_P
A
ASP
61
A
ASP
61
5
1
3
A
TYR
65
A
TYR
65
HELX_P
A
TYR
68
A
TYR
68
1
2
4
A
PHE
81
A
PHE
81
HELX_P
A
ASN
90
A
ASN
90
1
3
10
HORMONE/GROWTH FACTOR
Nuclear translocation, HDGF family, hath, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HORMONE-GROWTH FACTOR COMPLEX
HDGR3_MOUSE
UNP
1
8
Q9JMG7
EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWE
IEN
8
90
1N27
8
90
Q9JMG7
A
1
8
90
1
cloning artifact
GLY
1
1N27
A
Q9JMG7
UNP
1
1
cloning artifact
SER
2
1N27
A
Q9JMG7
UNP
2
1
cloning artifact
SER
3
1N27
A
Q9JMG7
UNP
3
1
cloning artifact
GLY
4
1N27
A
Q9JMG7
UNP
4
1
cloning artifact
SER
5
1N27
A
Q9JMG7
UNP
5
1
cloning artifact
SER
6
1N27
A
Q9JMG7
UNP
6
1
cloning artifact
GLY
7
1N27
A
Q9JMG7
UNP
7
1
cloning artifact
SER
91
1N27
A
Q9JMG7
UNP
91
1
cloning artifact
GLY
92
1N27
A
Q9JMG7
UNP
92
1
cloning artifact
PRO
93
1N27
A
Q9JMG7
UNP
93
1
cloning artifact
SER
94
1N27
A
Q9JMG7
UNP
94
1
cloning artifact
SER
95
1N27
A
Q9JMG7
UNP
95
1
cloning artifact
GLY
96
1N27
A
Q9JMG7
UNP
96
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
53
A
GLU
53
A
LEU
57
A
LEU
57
A
TYR
44
A
TYR
44
A
PHE
48
A
PHE
48
A
HIS
24
A
HIS
24
A
ILE
29
A
ILE
29
A
LEU
14
A
LEU
14
A
LYS
18
A
LYS
18
A
LEU
62
A
LEU
62
A
PRO
64
A
PRO
64
1
P 1