1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rak, A.
Kalinin, A.
Shcherbakov, D.
Bayer, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
299
710
714
10.1016/S0006-291X(02)02721-3
12470636
Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
2002
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
12345
12349
10.1073/pnas.96.22.12345
A protein residing at the subunit interface of the bacterial ribosome
1999
NE
J.BIOMOL.NMR
JBNME9
0800
0925-2738
23
335
336
10.1023/A:1020279728394
1H, 13C and 15N resonance assignments of the ribosome-associated cold shock response protein Yfia of Escherichia coli
2002
10.2210/pdb1n3g/pdb
pdb_00001n3g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12803.583
Protein yfiA
1
man
polymer
cold-shock protein Yfia, ribosome associated inhibitor RaiA
no
no
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINK
LERQLNKLQHKGEARRAATSVKDANFVEEVEEE
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINK
LERQLNKLQHKGEARRAATSVKDANFVEEVEEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET11c
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-01-28
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
Chemical Shift Data for Yfia
RCSB
Y
PDBJ
2002-10-28
REL
REL
Hydrogen bonds were extracted from a series of 15N-HSQC spectra recorded in D2O; Assignment was done using triple-resonance spectra
structures with acceptable covalent geometry, structures with the least restraint violations
50
29
HNHA
3D_15N-separated_NOESY
3D_13C-separated_NOESY
2D NOESY
50mM LiCl, 50mM KH2PO4
6.5
ambient
300
K
50mM LiCl, 50mM KH2PO4
6.5
ambient
300
K
50mM LiCl, 50mM KH2PO4
6.5
ambient
300
K
50mM LiCl, 50mM KH2PO4
6.5
ambient
300
K
Torsion angle dynamics and simulated annealing
1
lowest energy
0.8mM Yfia, U-15N-13C; 50mM phosphate buffer, 50mM LiCl
90% H2O/10% D2O
0.5mM Yfia, U-15N; 50mM phosphate buffer, 50mM LiCl
90% H2O/10% D2O
0.5mM Yfia, U-15N; 50mM phosphate buffer, 50mM LiCl
100% D2O
0.8mM Yfia; 50mM phosphate buffer, 50mM LiCl
90% H2O/10% D2O
Bruker, Rheinstetten, Germany
processing
XwinNMR
3.2
SpinUp, Dortmund, Germany
data analysis
NDEE
2.03
Varian, Darmstadt, Germany
collection
VNMR
6.1B
Bruker, Rheinstetten, Germany
data analysis
AURELIA
2.3
Axel Bruenger
refinement
CNS
1.0
600
Varian
INOVA
500
Bruker
DRX
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
MET
3
n
3
MET
3
A
ASN
4
n
4
ASN
4
A
ILE
5
n
5
ILE
5
A
THR
6
n
6
THR
6
A
SER
7
n
7
SER
7
A
LYS
8
n
8
LYS
8
A
GLN
9
n
9
GLN
9
A
MET
10
n
10
MET
10
A
GLU
11
n
11
GLU
11
A
ILE
12
n
12
ILE
12
A
THR
13
n
13
THR
13
A
PRO
14
n
14
PRO
14
A
ALA
15
n
15
ALA
15
A
ILE
16
n
16
ILE
16
A
ARG
17
n
17
ARG
17
A
GLN
18
n
18
GLN
18
A
HIS
19
n
19
HIS
19
A
VAL
20
n
20
VAL
20
A
ALA
21
n
21
ALA
21
A
ASP
22
n
22
ASP
22
A
ARG
23
n
23
ARG
23
A
LEU
24
n
24
LEU
24
A
ALA
25
n
25
ALA
25
A
LYS
26
n
26
LYS
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
LYS
29
n
29
LYS
29
A
TRP
30
n
30
TRP
30
A
GLN
31
n
31
GLN
31
A
THR
32
n
32
THR
32
A
HIS
33
n
33
HIS
33
A
LEU
34
n
34
LEU
34
A
ILE
35
n
35
ILE
35
A
ASN
36
n
36
ASN
36
A
PRO
37
n
37
PRO
37
A
HIS
38
n
38
HIS
38
A
ILE
39
n
39
ILE
39
A
ILE
40
n
40
ILE
40
A
LEU
41
n
41
LEU
41
A
SER
42
n
42
SER
42
A
LYS
43
n
43
LYS
43
A
GLU
44
n
44
GLU
44
A
PRO
45
n
45
PRO
45
A
GLN
46
n
46
GLN
46
A
GLY
47
n
47
GLY
47
A
PHE
48
n
48
PHE
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
ASP
51
n
51
ASP
51
A
ALA
52
n
52
ALA
52
A
THR
53
n
53
THR
53
A
ILE
54
n
54
ILE
54
A
ASN
55
n
55
ASN
55
A
THR
56
n
56
THR
56
A
PRO
57
n
57
PRO
57
A
ASN
58
n
58
ASN
58
A
GLY
59
n
59
GLY
59
A
VAL
60
n
60
VAL
60
A
LEU
61
n
61
LEU
61
A
VAL
62
n
62
VAL
62
A
ALA
63
n
63
ALA
63
A
SER
64
n
64
SER
64
A
GLY
65
n
65
GLY
65
A
LYS
66
n
66
LYS
66
A
HIS
67
n
67
HIS
67
A
GLU
68
n
68
GLU
68
A
ASP
69
n
69
ASP
69
A
MET
70
n
70
MET
70
A
TYR
71
n
71
TYR
71
A
THR
72
n
72
THR
72
A
ALA
73
n
73
ALA
73
A
ILE
74
n
74
ILE
74
A
ASN
75
n
75
ASN
75
A
GLU
76
n
76
GLU
76
A
LEU
77
n
77
LEU
77
A
ILE
78
n
78
ILE
78
A
ASN
79
n
79
ASN
79
A
LYS
80
n
80
LYS
80
A
LEU
81
n
81
LEU
81
A
GLU
82
n
82
GLU
82
A
ARG
83
n
83
ARG
83
A
GLN
84
n
84
GLN
84
A
LEU
85
n
85
LEU
85
A
ASN
86
n
86
ASN
86
A
LYS
87
n
87
LYS
87
A
LEU
88
n
88
LEU
88
A
GLN
89
n
89
GLN
89
A
HIS
90
n
90
HIS
90
A
LYS
91
n
91
LYS
91
A
GLY
92
n
92
GLY
92
A
GLU
93
n
93
GLU
93
A
ALA
94
n
94
ALA
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
THR
99
n
99
THR
99
A
SER
100
n
100
SER
100
A
VAL
101
n
101
VAL
101
A
LYS
102
n
102
LYS
102
A
ASP
103
n
103
ASP
103
A
ALA
104
n
104
ALA
104
A
ASN
105
n
105
ASN
105
A
PHE
106
n
106
PHE
106
A
VAL
107
n
107
VAL
107
A
GLU
108
n
108
GLU
108
A
GLU
109
n
109
GLU
109
A
VAL
110
n
110
VAL
110
A
GLU
111
n
111
GLU
111
A
GLU
112
n
112
GLU
112
A
GLU
113
n
113
GLU
113
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
4
A
N
ASN
4
A
O
ILE
39
A
O
ILE
39
A
N
HIS
38
A
N
HIS
38
A
O
THR
53
A
O
THR
53
A
N
PHE
48
A
N
PHE
48
A
O
HIS
67
A
O
HIS
67
4
A
A
O
H
ALA
ALA
52
63
1.58
5
A
A
H
O
PHE
HIS
48
67
1.58
7
A
A
O
H
SER
VAL
42
49
1.59
9
A
A
H
O
PHE
HIS
48
67
1.58
11
A
A
H
O
PHE
HIS
48
67
1.60
13
A
A
O
H
THR
LEU
32
34
1.58
20
A
A
H
O
PHE
HIS
48
67
1.58
1
A
MET
3
57.74
80.42
1
A
LYS
8
-74.50
-89.06
1
A
GLU
11
-55.86
-179.30
1
A
THR
32
-144.23
-88.26
1
A
HIS
33
150.03
-23.68
1
A
LEU
34
24.91
94.88
1
A
ASN
36
-110.92
75.93
1
A
GLN
46
-97.81
45.73
1
A
HIS
67
-174.65
146.40
1
A
HIS
90
-55.51
109.10
1
A
LYS
91
-154.83
40.65
1
A
GLU
93
-177.19
75.05
1
A
ARG
95
-61.81
93.70
1
A
ALA
97
63.09
166.82
1
A
ALA
98
62.55
-167.66
1
A
SER
100
-95.15
34.97
1
A
ASP
103
-161.90
111.95
1
A
ASN
105
-68.23
76.59
1
A
PHE
106
-85.40
-100.83
1
A
VAL
110
58.12
77.07
1
A
GLU
111
-95.37
-71.27
1
A
GLU
112
-149.32
-70.66
2
A
MET
3
38.80
56.87
2
A
LYS
8
-73.83
-78.94
2
A
GLN
9
-102.77
-60.01
2
A
GLU
11
-57.88
-166.55
2
A
TRP
30
-91.51
38.49
2
A
GLN
31
49.23
15.04
2
A
LEU
34
21.26
99.66
2
A
ASN
36
-106.86
69.26
2
A
GLN
46
-101.13
49.20
2
A
HIS
67
-177.17
126.38
2
A
LYS
87
-64.07
-70.25
2
A
HIS
90
-67.74
69.57
2
A
LYS
91
176.84
35.81
2
A
ALA
94
-126.69
-54.25
2
A
ARG
95
70.03
-64.71
2
A
PHE
106
-63.15
-117.22
2
A
GLU
108
61.48
-101.13
2
A
GLU
109
-69.21
-163.54
2
A
VAL
110
74.51
133.98
2
A
GLU
112
-173.85
34.78
3
A
MET
3
-55.40
91.36
3
A
MET
10
-163.90
95.86
3
A
LEU
34
62.64
138.72
3
A
ILE
35
-132.05
-55.87
3
A
ASN
36
-111.35
66.87
3
A
GLN
46
-101.84
47.27
3
A
HIS
67
-175.62
146.27
3
A
HIS
90
-57.37
96.04
3
A
LYS
91
-177.74
-76.94
3
A
ARG
95
-67.30
75.13
3
A
SER
100
-91.00
50.19
3
A
VAL
101
-57.52
-175.42
3
A
LYS
102
-65.18
75.68
3
A
ASP
103
-90.12
-74.41
3
A
GLU
109
-87.11
-149.81
4
A
MET
3
63.83
77.82
4
A
LEU
34
63.56
122.51
4
A
ILE
35
-109.08
-63.27
4
A
ASN
36
-109.35
79.09
4
A
GLN
46
-101.62
53.29
4
A
LEU
85
-70.65
-71.26
4
A
ASN
86
-38.68
-39.57
4
A
LYS
87
-69.16
-80.25
4
A
HIS
90
-60.34
73.61
4
A
LYS
91
172.48
88.66
4
A
ARG
95
-174.77
66.41
4
A
ALA
97
67.63
-70.59
4
A
VAL
101
-96.60
-84.66
4
A
ALA
104
-64.37
-79.16
4
A
GLU
108
-119.40
-165.50
4
A
GLU
109
-70.13
-166.91
4
A
GLU
112
46.53
76.09
5
A
MET
3
63.56
74.26
5
A
LYS
8
-69.89
-80.98
5
A
GLN
31
71.72
-11.18
5
A
LEU
34
53.61
88.63
5
A
HIS
90
-64.37
-125.39
5
A
GLU
93
-161.40
-96.09
5
A
ALA
94
42.52
-158.71
5
A
ARG
95
62.65
111.23
5
A
ALA
97
65.37
169.76
5
A
THR
99
-65.13
-162.10
5
A
VAL
101
-94.10
-61.46
5
A
LYS
102
-90.18
54.01
5
A
ASP
103
-56.65
-179.53
5
A
PHE
106
-93.45
42.99
5
A
VAL
110
179.06
-32.71
5
A
GLU
111
-96.45
30.26
6
A
MET
3
-54.96
90.17
6
A
GLN
9
69.44
-56.38
6
A
TRP
30
-56.34
-170.57
6
A
GLN
31
-84.39
43.83
6
A
LEU
34
62.77
125.73
6
A
ASN
36
-111.16
72.04
6
A
GLN
46
-101.64
41.69
6
A
LYS
91
-152.58
79.50
6
A
ARG
96
-77.81
-81.89
6
A
ALA
97
51.93
101.73
6
A
SER
100
-60.31
85.67
6
A
VAL
101
-96.86
-83.65
7
A
THR
2
-85.08
-147.77
7
A
MET
3
-158.12
84.24
7
A
ASN
4
-102.39
77.13
7
A
LYS
8
-76.15
-87.58
7
A
TRP
30
-52.84
172.82
7
A
LEU
34
58.01
99.99
7
A
VAL
49
-111.01
76.08
7
A
HIS
67
-175.19
145.48
7
A
GLU
82
-53.58
-74.49
7
A
LYS
91
-142.72
-54.55
7
A
ALA
94
-73.17
-165.66
7
A
ARG
95
-140.31
-49.19
7
A
ARG
96
-67.79
99.22
7
A
ALA
98
53.01
-170.20
7
A
LYS
102
-89.07
-75.86
7
A
VAL
107
-105.49
-168.56
7
A
GLU
112
-93.35
54.85
8
A
THR
2
-67.52
-153.02
8
A
LYS
8
-70.18
-76.66
8
A
MET
10
-168.62
105.90
8
A
GLU
11
-55.62
178.32
8
A
LYS
29
-96.45
38.19
8
A
GLN
31
47.72
16.00
8
A
THR
32
-84.73
-95.25
8
A
HIS
33
157.62
-18.29
8
A
LEU
34
-15.41
125.04
8
A
GLN
46
-101.17
40.07
8
A
VAL
49
-110.45
72.94
8
A
LYS
91
-111.49
61.84
8
A
GLU
93
-46.04
100.87
8
A
VAL
101
-96.66
-70.46
8
A
PHE
106
-58.57
84.07
8
A
GLU
108
175.09
-29.75
8
A
GLU
109
-57.12
93.56
8
A
GLU
112
79.01
-57.49
9
A
MET
3
-154.55
88.98
9
A
THR
6
-165.38
72.74
9
A
LYS
8
-96.26
-154.42
9
A
GLU
11
58.74
122.37
9
A
GLN
31
63.22
-0.88
9
A
LEU
34
-23.53
104.77
9
A
ASN
36
-110.53
76.59
9
A
PRO
37
-65.84
90.85
9
A
GLN
46
-100.70
53.35
9
A
VAL
49
-111.36
72.02
9
A
HIS
67
-176.75
139.27
9
A
LYS
91
66.57
80.91
9
A
ALA
94
59.47
-167.56
9
A
ALA
97
-134.79
-78.14
9
A
ALA
98
60.23
106.83
9
A
VAL
101
-96.68
-82.56
9
A
ALA
104
-57.70
178.17
9
A
VAL
107
-104.59
-144.41
9
A
GLU
108
69.24
133.63
9
A
GLU
112
-179.17
82.80
10
A
LYS
8
-79.90
-88.55
10
A
MET
10
-166.82
105.61
10
A
GLU
11
-57.42
-175.73
10
A
TRP
30
-88.90
46.86
10
A
GLN
31
50.91
13.06
10
A
LEU
34
61.12
116.51
10
A
ASN
36
-110.58
64.72
10
A
GLN
46
-100.16
42.97
10
A
HIS
67
-178.12
132.03
10
A
LYS
91
60.91
86.56
10
A
ARG
95
61.14
142.94
10
A
ALA
104
-63.10
81.53
11
A
MET
3
106.72
73.30
11
A
GLN
9
-172.95
-32.77
11
A
TRP
30
-98.33
35.25
11
A
GLN
31
62.90
-0.21
11
A
LEU
34
-2.36
116.53
11
A
VAL
49
-111.34
74.19
11
A
LYS
91
64.42
60.68
11
A
ALA
94
-52.98
-177.00
11
A
ALA
97
-130.93
-73.15
11
A
THR
99
-90.36
52.87
11
A
GLU
108
-72.71
-122.65
12
A
MET
3
61.78
82.43
12
A
THR
6
-151.80
87.24
12
A
LYS
8
-78.20
-87.31
12
A
GLN
9
-113.71
56.73
12
A
MET
10
-177.97
94.59
12
A
GLU
11
-57.18
-169.40
12
A
LYS
29
-110.28
53.10
12
A
GLN
31
46.04
18.32
12
A
LEU
34
63.12
131.55
12
A
ASN
36
-110.57
74.83
12
A
GLN
46
-100.04
44.97
12
A
HIS
90
-79.11
27.07
12
A
ARG
95
-68.98
79.88
12
A
ALA
97
59.08
87.13
12
A
PHE
106
-61.40
-155.51
12
A
GLU
108
68.06
-68.02
13
A
THR
2
-59.60
-163.15
13
A
MET
3
-157.89
75.50
13
A
GLN
9
65.30
-72.14
13
A
GLN
31
42.48
22.17
13
A
HIS
33
58.71
-64.25
13
A
LEU
34
75.84
106.92
13
A
ILE
35
-106.67
-60.97
13
A
GLN
46
-101.63
50.49
13
A
HIS
67
-176.16
127.25
13
A
LYS
91
-177.90
-56.36
13
A
GLU
93
-165.36
-98.53
13
A
ARG
95
-144.37
30.20
13
A
ALA
98
63.08
166.77
13
A
THR
99
-61.12
-161.32
13
A
SER
100
-62.83
79.95
13
A
ASP
103
-46.48
109.48
13
A
ASN
105
-100.47
76.33
13
A
GLU
108
-76.18
-125.01
13
A
VAL
110
-68.48
-174.71
13
A
GLU
112
-116.45
-71.92
14
A
MET
3
73.69
87.19
14
A
THR
6
-160.37
74.68
14
A
GLN
9
67.72
-69.80
14
A
GLN
31
44.57
20.05
14
A
THR
32
-96.93
-109.94
14
A
HIS
33
166.45
-59.54
14
A
LEU
34
61.34
146.85
14
A
ILE
35
-138.59
-62.27
14
A
ASN
36
-108.51
73.26
14
A
GLN
46
-102.01
50.97
14
A
LYS
91
-161.80
31.12
14
A
GLU
93
-124.93
-133.59
14
A
ALA
94
53.13
-170.92
14
A
ALA
97
179.20
-38.00
14
A
ALA
98
64.92
150.67
14
A
ASP
103
54.29
80.00
14
A
ASN
105
-100.04
53.89
14
A
PHE
106
-92.97
47.56
14
A
GLU
109
-72.49
-127.10
14
A
GLU
112
-67.14
75.75
15
A
MET
3
-55.75
90.90
15
A
GLN
9
38.49
36.88
15
A
MET
10
-164.91
84.16
15
A
TRP
30
-49.02
159.38
15
A
GLN
31
-69.53
65.43
15
A
THR
32
-146.93
-60.77
15
A
HIS
33
97.72
-30.05
15
A
LEU
34
59.41
139.77
15
A
ILE
35
-129.35
-51.83
15
A
ASN
36
-111.79
65.31
15
A
THR
53
-172.61
103.86
15
A
LYS
91
78.42
63.24
15
A
GLU
93
169.28
-70.68
15
A
ALA
94
171.57
-166.12
15
A
THR
99
-65.10
79.47
15
A
SER
100
-94.97
47.07
15
A
VAL
101
-96.43
-81.92
15
A
ASP
103
42.73
96.83
15
A
ALA
104
-48.65
103.69
15
A
ASN
105
-85.05
-73.91
15
A
PHE
106
-57.92
-179.22
15
A
VAL
110
-92.94
52.12
15
A
GLU
111
-95.97
55.54
15
A
GLU
112
-158.66
-45.70
16
A
MET
3
64.13
74.98
16
A
LYS
8
-76.16
-86.35
16
A
GLU
11
51.37
177.15
16
A
TRP
30
-49.23
161.57
16
A
GLN
31
-68.90
64.83
16
A
LEU
34
27.24
107.16
16
A
GLN
46
-101.43
50.37
16
A
HIS
67
-173.54
148.02
16
A
LYS
91
53.88
79.45
16
A
ALA
97
66.09
125.86
16
A
ALA
104
-61.41
84.73
16
A
VAL
107
-104.35
55.82
16
A
GLU
108
62.59
151.00
17
A
THR
2
-89.13
-134.94
17
A
MET
3
-161.16
82.94
17
A
LYS
8
-81.20
-83.48
17
A
GLU
11
-53.15
-177.77
17
A
GLN
31
-87.69
40.38
17
A
LEU
34
64.14
130.19
17
A
ILE
35
-129.51
-52.43
17
A
ASN
36
-110.99
79.57
17
A
GLN
46
-101.97
50.56
17
A
HIS
67
-179.52
146.38
17
A
LEU
85
-65.68
-70.38
17
A
HIS
90
-69.97
65.84
17
A
LYS
91
-168.29
56.82
17
A
ALA
94
-177.58
-168.18
17
A
ALA
98
63.62
134.84
17
A
SER
100
-94.99
40.19
17
A
LYS
102
-51.59
89.07
17
A
GLU
108
66.27
172.25
17
A
GLU
109
-85.94
48.03
17
A
VAL
110
47.22
95.40
18
A
THR
2
-64.18
-123.84
18
A
MET
3
-177.20
85.89
18
A
GLN
9
35.46
36.91
18
A
TRP
30
-59.98
-162.09
18
A
GLN
31
-87.65
37.02
18
A
LEU
34
62.25
137.02
18
A
ILE
35
-130.25
-58.73
18
A
GLN
46
-102.43
46.73
18
A
HIS
67
-177.38
126.22
18
A
GLU
93
-147.65
-63.38
18
A
ALA
94
-173.51
68.81
18
A
ARG
95
-56.63
89.86
18
A
ALA
98
67.21
103.08
18
A
SER
100
-54.91
100.81
18
A
ASN
105
-95.05
-80.94
18
A
PHE
106
-66.35
-152.37
18
A
VAL
107
-64.65
98.54
18
A
GLU
108
-137.35
-103.39
18
A
GLU
109
-56.22
98.98
18
A
GLU
112
-107.91
63.34
19
A
MET
3
57.48
82.15
19
A
LYS
8
-69.74
-82.81
19
A
TRP
30
-57.78
-166.51
19
A
GLN
31
-86.02
34.00
19
A
LEU
34
-2.46
115.62
19
A
ASN
36
-111.03
63.64
19
A
ASN
79
-53.61
-71.14
19
A
LYS
91
69.45
91.64
19
A
GLU
93
-171.19
-101.11
19
A
ALA
94
62.30
137.93
19
A
ALA
97
-168.19
97.80
19
A
ALA
104
-89.79
36.18
19
A
GLU
108
-47.96
-92.88
19
A
GLU
109
-55.67
-178.92
20
A
MET
3
-55.68
95.56
20
A
LYS
8
-69.68
-92.10
20
A
GLU
11
-48.81
171.77
20
A
GLN
31
44.67
19.50
20
A
LEU
34
64.26
126.15
20
A
ASN
36
-109.45
71.74
20
A
GLU
93
67.47
-69.40
20
A
ALA
94
56.51
88.44
20
A
ARG
95
-140.24
36.34
20
A
ALA
97
-74.89
-150.64
20
A
ALA
98
81.58
-67.96
20
A
GLU
108
67.34
146.17
20
A
GLU
109
-92.07
-158.65
20
A
GLU
111
-96.78
31.05
20
A
GLU
112
58.66
84.07
21
A
MET
3
61.72
86.67
21
A
LYS
8
-80.37
-149.40
21
A
GLU
11
-68.72
-165.89
21
A
GLN
31
47.96
15.99
21
A
THR
32
-80.19
-76.48
21
A
HIS
33
115.22
4.93
21
A
LEU
34
-17.12
115.29
21
A
ASN
36
-109.03
78.48
21
A
GLN
46
-94.27
43.01
21
A
HIS
90
-57.65
102.86
21
A
LYS
91
177.45
-66.90
21
A
ARG
96
-58.03
91.60
21
A
ALA
98
-47.94
102.17
21
A
LYS
102
-92.11
48.77
21
A
ASN
105
-91.29
54.03
21
A
PHE
106
-93.07
-89.82
21
A
GLU
108
170.49
-80.92
21
A
GLU
109
-63.66
-151.98
21
A
GLU
111
-93.56
43.65
21
A
GLU
112
62.36
-79.53
22
A
THR
2
-63.16
-158.29
22
A
MET
3
-155.49
79.75
22
A
THR
6
-108.79
72.09
22
A
LYS
8
-83.55
-77.01
22
A
GLU
11
-54.71
-178.21
22
A
TRP
30
-92.03
43.18
22
A
GLN
31
46.20
18.40
22
A
LEU
34
63.33
143.19
22
A
ILE
35
-121.72
-65.00
22
A
ASP
69
169.67
154.60
22
A
LYS
91
179.70
-56.52
22
A
GLU
93
67.03
75.88
22
A
ARG
95
57.11
84.30
22
A
SER
100
-69.12
71.41
22
A
ASN
105
-95.29
42.12
22
A
VAL
107
-104.99
59.71
22
A
GLU
108
-15.33
114.44
22
A
GLU
109
-92.43
52.53
22
A
VAL
110
66.32
150.23
23
A
THR
2
-63.16
-165.44
23
A
LYS
8
-67.91
-146.40
23
A
GLN
31
55.09
7.95
23
A
LEU
34
-35.39
129.45
23
A
GLN
46
-100.34
49.23
23
A
ASN
55
-68.34
72.97
23
A
ASN
58
-94.63
37.16
23
A
VAL
60
-49.27
100.39
23
A
HIS
90
-62.72
67.37
23
A
LYS
91
65.69
70.99
23
A
GLU
93
-105.26
-78.69
23
A
ALA
94
-176.09
-71.15
23
A
THR
99
-75.43
-169.50
23
A
SER
100
-69.17
89.75
23
A
VAL
101
-96.02
-74.36
23
A
GLU
108
-62.98
-122.51
23
A
VAL
110
-153.70
-116.37
23
A
GLU
111
-96.23
40.70
24
A
MET
3
61.61
80.10
24
A
THR
6
-162.92
82.43
24
A
LYS
8
-69.40
-89.59
24
A
ILE
12
-63.36
88.81
24
A
TRP
30
-94.14
36.18
24
A
GLN
31
50.99
13.09
24
A
LEU
34
26.81
94.16
24
A
GLN
46
-101.32
48.65
24
A
HIS
67
177.53
145.75
24
A
HIS
90
-68.18
64.63
24
A
LYS
91
175.69
57.43
24
A
GLU
93
-174.68
85.82
24
A
ALA
94
-144.47
-70.92
24
A
ARG
95
-177.08
129.21
24
A
VAL
101
-79.68
-76.96
24
A
LYS
102
-91.98
-85.36
24
A
ASP
103
43.50
71.24
24
A
GLU
108
71.82
169.82
24
A
VAL
110
49.51
99.55
24
A
GLU
111
-73.62
-83.70
25
A
MET
3
-58.09
88.21
25
A
GLN
9
68.57
-63.10
25
A
GLN
31
65.69
-4.23
25
A
LEU
34
49.94
93.16
25
A
GLN
46
-101.98
49.22
25
A
THR
53
-163.76
100.03
25
A
HIS
90
-59.02
-80.24
25
A
ARG
95
-176.16
100.84
25
A
PHE
106
-74.34
-157.20
25
A
VAL
107
-68.89
59.92
25
A
VAL
110
64.58
131.18
25
A
GLU
111
-95.76
41.78
26
A
THR
2
-73.41
-156.67
26
A
MET
3
-170.58
57.15
26
A
LYS
8
-75.90
-83.28
26
A
GLN
31
56.65
6.34
26
A
HIS
33
91.07
5.12
26
A
LEU
34
-16.60
136.51
26
A
ASN
36
-107.43
79.80
26
A
GLN
46
-101.01
51.20
26
A
ASN
58
-95.64
31.53
26
A
HIS
90
-63.23
-160.76
26
A
GLU
93
-116.70
-70.01
26
A
ARG
95
-121.80
-52.81
26
A
ASN
105
-95.26
45.90
26
A
GLU
112
64.91
-79.16
27
A
THR
6
-151.86
51.01
27
A
LYS
8
-69.84
-95.63
27
A
TRP
30
-104.38
65.59
27
A
GLN
31
49.47
14.78
27
A
LEU
34
62.20
138.23
27
A
ASN
36
-110.91
67.05
27
A
ALA
50
-102.81
72.61
27
A
GLU
93
-168.34
71.33
27
A
ARG
95
-177.79
-67.89
27
A
ALA
98
-169.39
34.45
27
A
ASP
103
-170.64
34.53
27
A
PHE
106
-93.18
52.84
27
A
GLU
108
174.46
154.70
27
A
GLU
112
-138.68
-37.61
28
A
THR
2
-67.67
89.16
28
A
MET
3
-58.43
92.70
28
A
LYS
8
-89.52
-83.67
28
A
GLU
11
42.10
175.98
28
A
LYS
29
-95.20
31.00
28
A
GLN
31
62.91
-0.43
28
A
LEU
34
-0.11
112.97
28
A
ASN
36
-110.88
78.81
28
A
GLN
46
-101.43
43.20
28
A
VAL
60
-48.15
94.61
28
A
HIS
67
-179.17
144.69
28
A
HIS
90
-65.46
82.40
28
A
LYS
91
-179.76
-46.13
28
A
GLU
93
67.44
133.37
28
A
ALA
94
72.01
-72.17
28
A
ARG
95
34.64
97.29
28
A
LYS
102
-75.21
-72.15
28
A
ASP
103
45.31
-167.73
28
A
ALA
104
-58.89
91.20
28
A
PHE
106
-94.30
36.54
28
A
GLU
108
-106.06
-166.56
28
A
GLU
109
-93.68
-150.03
28
A
VAL
110
88.21
14.73
29
A
THR
2
-81.19
-159.26
29
A
LYS
8
-75.56
-143.52
29
A
GLU
11
-67.71
-178.73
29
A
GLN
31
46.30
18.34
29
A
LEU
34
-17.05
136.32
29
A
ASN
36
-106.96
70.54
29
A
GLN
46
-102.02
46.15
29
A
VAL
49
-110.18
75.53
29
A
VAL
60
80.07
130.39
29
A
HIS
67
-175.29
146.54
29
A
HIS
90
-64.15
86.97
29
A
GLU
93
59.84
111.34
29
A
ALA
94
-95.75
37.34
29
A
ARG
95
59.19
94.53
29
A
ALA
98
-128.90
-169.25
29
A
LYS
102
-93.46
34.85
29
A
PHE
106
-77.00
-149.37
29
A
GLU
108
-62.20
-122.91
29
A
VAL
110
-156.14
82.26
Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli
1
N
N
A
THR
13
A
THR
13
HELX_P
A
GLU
28
A
GLU
28
1
1
16
A
ASP
69
A
ASP
69
HELX_P
A
HIS
90
A
HIS
90
1
2
22
A
ALA
97
A
ALA
97
HELX_P
A
LYS
102
A
LYS
102
5
3
6
TRANSLATION
cold shock, translation inhibitor, dsRBD, translation
YFIA_ECOLI
UNP
1
0
P0AD49
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINK
LERQLNKLQHKGEARRAATSVKDANFVEEVEEE
0
112
1N3G
1
113
P0AD49
A
1
1
113
4
parallel
anti-parallel
anti-parallel
A
ASN
4
A
ASN
4
A
ILE
5
A
ILE
5
A
ASN
36
A
ASN
36
A
GLU
44
A
GLU
44
A
GLY
47
A
GLY
47
A
THR
56
A
THR
56
A
GLY
59
A
GLY
59
A
HIS
67
A
HIS
67