1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Manzur, K.L.
Farooq, A.
Zeng, L.
Plotnikova, O.
Sachchidanand
Koch, A.W.
Zhou, M.-M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
187
196
10.1038/nsb898
12567185
A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3.
2003
10.2210/pdb1n3j/pdb
pdb_00001n3j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
13606.623
Histone H3 Lysine Methyltransferase
2
man
polymer
A612L
no
no
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL
TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL
TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chlorovirus
Escherichia
Escherichia coli
sample
A612L
10506
Paramecium bursaria Chlorella virus 1
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET22b
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-01-28
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2002-10-28
REL
mimized average structure
200
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
3D_13C-filtered_13C-separated_NOESY
1M
6.5
1
atm
310
K
distance geometry
simulated annealing
molecular dynamics
minimized average structure
0.5mM Protein, 50mM Sodium phosphate, 700mM NaCl, 300mM Urea, 0.1mM EDTA, 5mM DTT-d10
90% H2O/10% D2O
processing
NMRPipe
3.1
structure solution
X-PLOR
3.1
collection
XwinNMR
3.1
structure solution
ARIA
1.1
Brunger
refinement
X-PLOR
3.1
600
Bruker
DRX
MET
1
n
1
MET
1
A
PHE
2
n
2
PHE
2
A
ASN
3
n
3
ASN
3
A
ASP
4
n
4
ASP
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
ILE
7
n
7
ILE
7
A
VAL
8
n
8
VAL
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
SER
11
n
11
SER
11
A
PRO
12
n
12
PRO
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
GLY
15
n
15
GLY
15
A
TYR
16
n
16
TYR
16
A
GLY
17
n
17
GLY
17
A
VAL
18
n
18
VAL
18
A
PHE
19
n
19
PHE
19
A
ALA
20
n
20
ALA
20
A
ARG
21
n
21
ARG
21
A
LYS
22
n
22
LYS
22
A
SER
23
n
23
SER
23
A
PHE
24
n
24
PHE
24
A
GLU
25
n
25
GLU
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
LEU
29
n
29
LEU
29
A
VAL
30
n
30
VAL
30
A
GLU
31
n
31
GLU
31
A
GLU
32
n
32
GLU
32
A
CYS
33
n
33
CYS
33
A
LEU
34
n
34
LEU
34
A
CYS
35
n
35
CYS
35
A
ILE
36
n
36
ILE
36
A
VAL
37
n
37
VAL
37
A
ARG
38
n
38
ARG
38
A
HIS
39
n
39
HIS
39
A
ASN
40
n
40
ASN
40
A
ASP
41
n
41
ASP
41
A
ASP
42
n
42
ASP
42
A
TRP
43
n
43
TRP
43
A
GLY
44
n
44
GLY
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
LEU
47
n
47
LEU
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
TYR
50
n
50
TYR
50
A
LEU
51
n
51
LEU
51
A
PHE
52
n
52
PHE
52
A
SER
53
n
53
SER
53
A
ARG
54
n
54
ARG
54
A
LYS
55
n
55
LYS
55
A
ASN
56
n
56
ASN
56
A
MET
57
n
57
MET
57
A
SER
58
n
58
SER
58
A
ALA
59
n
59
ALA
59
A
MET
60
n
60
MET
60
A
ALA
61
n
61
ALA
61
A
LEU
62
n
62
LEU
62
A
GLY
63
n
63
GLY
63
A
PHE
64
n
64
PHE
64
A
GLY
65
n
65
GLY
65
A
ALA
66
n
66
ALA
66
A
ILE
67
n
67
ILE
67
A
PHE
68
n
68
PHE
68
A
ASN
69
n
69
ASN
69
A
HIS
70
n
70
HIS
70
A
SER
71
n
71
SER
71
A
LYS
72
n
72
LYS
72
A
ASP
73
n
73
ASP
73
A
PRO
74
n
74
PRO
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
ARG
77
n
77
ARG
77
A
HIS
78
n
78
HIS
78
A
GLU
79
n
79
GLU
79
A
LEU
80
n
80
LEU
80
A
THR
81
n
81
THR
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
ARG
86
n
86
ARG
86
A
MET
87
n
87
MET
87
A
ARG
88
n
88
ARG
88
A
ILE
89
n
89
ILE
89
A
PHE
90
n
90
PHE
90
A
THR
91
n
91
THR
91
A
ILE
92
n
92
ILE
92
A
LYS
93
n
93
LYS
93
A
PRO
94
n
94
PRO
94
A
ILE
95
n
95
ILE
95
A
ALA
96
n
96
ALA
96
A
ILE
97
n
97
ILE
97
A
GLY
98
n
98
GLY
98
A
GLU
99
n
99
GLU
99
A
GLU
100
n
100
GLU
100
A
ILE
101
n
101
ILE
101
A
THR
102
n
102
THR
102
A
ILE
103
n
103
ILE
103
A
SER
104
n
104
SER
104
A
TYR
105
n
105
TYR
105
A
GLY
106
n
106
GLY
106
A
ASP
107
n
107
ASP
107
A
ASP
108
n
108
ASP
108
A
TYR
109
n
109
TYR
109
A
TRP
110
n
110
TRP
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
ARG
113
n
113
ARG
113
A
PRO
114
n
114
PRO
114
A
ARG
115
n
115
ARG
115
A
LEU
116
n
116
LEU
116
A
THR
117
n
117
THR
117
A
GLN
118
n
118
GLN
118
A
ASN
119
n
119
ASN
119
A
MET
1
n
1
MET
1
B
PHE
2
n
2
PHE
2
B
ASN
3
n
3
ASN
3
B
ASP
4
n
4
ASP
4
B
ARG
5
n
5
ARG
5
B
VAL
6
n
6
VAL
6
B
ILE
7
n
7
ILE
7
B
VAL
8
n
8
VAL
8
B
LYS
9
n
9
LYS
9
B
LYS
10
n
10
LYS
10
B
SER
11
n
11
SER
11
B
PRO
12
n
12
PRO
12
B
LEU
13
n
13
LEU
13
B
GLY
14
n
14
GLY
14
B
GLY
15
n
15
GLY
15
B
TYR
16
n
16
TYR
16
B
GLY
17
n
17
GLY
17
B
VAL
18
n
18
VAL
18
B
PHE
19
n
19
PHE
19
B
ALA
20
n
20
ALA
20
B
ARG
21
n
21
ARG
21
B
LYS
22
n
22
LYS
22
B
SER
23
n
23
SER
23
B
PHE
24
n
24
PHE
24
B
GLU
25
n
25
GLU
25
B
LYS
26
n
26
LYS
26
B
GLY
27
n
27
GLY
27
B
GLU
28
n
28
GLU
28
B
LEU
29
n
29
LEU
29
B
VAL
30
n
30
VAL
30
B
GLU
31
n
31
GLU
31
B
GLU
32
n
32
GLU
32
B
CYS
33
n
33
CYS
33
B
LEU
34
n
34
LEU
34
B
CYS
35
n
35
CYS
35
B
ILE
36
n
36
ILE
36
B
VAL
37
n
37
VAL
37
B
ARG
38
n
38
ARG
38
B
HIS
39
n
39
HIS
39
B
ASN
40
n
40
ASN
40
B
ASP
41
n
41
ASP
41
B
ASP
42
n
42
ASP
42
B
TRP
43
n
43
TRP
43
B
GLY
44
n
44
GLY
44
B
THR
45
n
45
THR
45
B
ALA
46
n
46
ALA
46
B
LEU
47
n
47
LEU
47
B
GLU
48
n
48
GLU
48
B
ASP
49
n
49
ASP
49
B
TYR
50
n
50
TYR
50
B
LEU
51
n
51
LEU
51
B
PHE
52
n
52
PHE
52
B
SER
53
n
53
SER
53
B
ARG
54
n
54
ARG
54
B
LYS
55
n
55
LYS
55
B
ASN
56
n
56
ASN
56
B
MET
57
n
57
MET
57
B
SER
58
n
58
SER
58
B
ALA
59
n
59
ALA
59
B
MET
60
n
60
MET
60
B
ALA
61
n
61
ALA
61
B
LEU
62
n
62
LEU
62
B
GLY
63
n
63
GLY
63
B
PHE
64
n
64
PHE
64
B
GLY
65
n
65
GLY
65
B
ALA
66
n
66
ALA
66
B
ILE
67
n
67
ILE
67
B
PHE
68
n
68
PHE
68
B
ASN
69
n
69
ASN
69
B
HIS
70
n
70
HIS
70
B
SER
71
n
71
SER
71
B
LYS
72
n
72
LYS
72
B
ASP
73
n
73
ASP
73
B
PRO
74
n
74
PRO
74
B
ASN
75
n
75
ASN
75
B
ALA
76
n
76
ALA
76
B
ARG
77
n
77
ARG
77
B
HIS
78
n
78
HIS
78
B
GLU
79
n
79
GLU
79
B
LEU
80
n
80
LEU
80
B
THR
81
n
81
THR
81
B
ALA
82
n
82
ALA
82
B
GLY
83
n
83
GLY
83
B
LEU
84
n
84
LEU
84
B
LYS
85
n
85
LYS
85
B
ARG
86
n
86
ARG
86
B
MET
87
n
87
MET
87
B
ARG
88
n
88
ARG
88
B
ILE
89
n
89
ILE
89
B
PHE
90
n
90
PHE
90
B
THR
91
n
91
THR
91
B
ILE
92
n
92
ILE
92
B
LYS
93
n
93
LYS
93
B
PRO
94
n
94
PRO
94
B
ILE
95
n
95
ILE
95
B
ALA
96
n
96
ALA
96
B
ILE
97
n
97
ILE
97
B
GLY
98
n
98
GLY
98
B
GLU
99
n
99
GLU
99
B
GLU
100
n
100
GLU
100
B
ILE
101
n
101
ILE
101
B
THR
102
n
102
THR
102
B
ILE
103
n
103
ILE
103
B
SER
104
n
104
SER
104
B
TYR
105
n
105
TYR
105
B
GLY
106
n
106
GLY
106
B
ASP
107
n
107
ASP
107
B
ASP
108
n
108
ASP
108
B
TYR
109
n
109
TYR
109
B
TRP
110
n
110
TRP
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
ARG
113
n
113
ARG
113
B
PRO
114
n
114
PRO
114
B
ARG
115
n
115
ARG
115
B
LEU
116
n
116
LEU
116
B
THR
117
n
117
THR
117
B
GLN
118
n
118
GLN
118
B
ASN
119
n
119
ASN
119
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
9
A
N
LYS
9
A
O
GLY
17
A
O
GLY
17
A
N
ALA
20
A
N
ALA
20
A
O
GLU
99
A
O
GLU
99
A
N
GLU
28
A
N
GLU
28
A
O
THR
91
A
O
THR
91
A
O
ARG
88
A
O
ARG
88
A
N
GLU
79
A
N
GLU
79
A
N
ARG
38
A
N
ARG
38
A
O
SER
58
A
O
SER
58
A
O
ALA
59
A
O
ALA
59
A
N
PHE
52
A
N
PHE
52
B
N
LYS
9
B
N
LYS
9
B
O
GLY
17
B
O
GLY
17
B
N
ALA
20
B
N
ALA
20
B
O
GLU
99
B
O
GLU
99
B
N
GLU
28
B
N
GLU
28
B
O
THR
91
B
O
THR
91
B
O
ARG
88
B
O
ARG
88
B
N
GLU
79
B
N
GLU
79
B
N
ARG
38
B
N
ARG
38
B
O
SER
58
B
O
SER
58
B
O
ALA
59
B
O
ALA
59
B
N
PHE
52
B
N
PHE
52
1
A
LEU
13
-175.23
33.21
1
A
ARG
21
-111.24
70.21
1
A
LYS
22
-173.39
89.70
1
A
LYS
26
-53.48
106.27
1
A
GLU
32
-165.56
-161.92
1
A
CYS
33
-174.82
57.20
1
A
LEU
34
-150.85
51.69
1
A
GLU
48
-44.19
92.56
1
A
ASP
49
-149.50
-107.79
1
A
TYR
50
-104.29
65.98
1
A
LYS
55
60.37
-76.73
1
A
ALA
61
-129.67
-163.31
1
A
LEU
62
-172.52
61.75
1
A
HIS
70
-63.54
81.38
1
A
PRO
74
-67.52
96.21
1
A
GLU
79
-150.80
88.47
1
A
LYS
85
60.91
-127.15
1
A
ARG
86
-175.58
-151.78
1
A
ILE
97
39.48
34.78
1
A
THR
102
-137.92
-145.48
1
A
SER
104
56.58
107.92
1
A
TYR
105
-160.99
67.86
1
A
ASP
107
-148.79
-65.33
1
A
TYR
109
-59.13
107.80
1
A
SER
112
-174.30
31.52
1
A
ARG
113
53.44
85.28
1
A
THR
117
-58.52
87.82
1
A
GLN
118
57.64
-83.57
1
B
LEU
13
-175.40
33.18
1
B
ARG
21
-111.26
70.21
1
B
LYS
22
-173.44
89.71
1
B
LYS
26
-53.37
106.21
1
B
GLU
32
-165.56
-161.90
1
B
CYS
33
-174.83
57.20
1
B
LEU
34
-150.88
51.70
1
B
GLU
48
-44.13
92.47
1
B
ASP
49
-149.39
-107.72
1
B
TYR
50
-104.33
65.75
1
B
LYS
55
60.37
-76.80
1
B
ALA
61
-129.77
-163.27
1
B
LEU
62
-172.54
61.74
1
B
HIS
70
-63.59
81.38
1
B
PRO
74
-67.53
96.23
1
B
GLU
79
-151.07
88.53
1
B
LYS
85
60.78
-127.25
1
B
ARG
86
-175.48
-151.75
1
B
ILE
97
39.49
34.71
1
B
THR
102
-137.99
-145.36
1
B
SER
104
56.55
107.95
1
B
TYR
105
-161.01
67.90
1
B
ASP
107
-148.79
-65.34
1
B
TYR
109
-59.20
107.91
1
B
SER
112
-174.24
31.58
1
B
ARG
113
53.39
85.30
1
B
THR
117
-58.57
87.76
1
B
GLN
118
57.77
-83.66
minimized average
Structure and Substrate of a Histone H3 Lysine Methyltransferase from Paramecium Bursaria Chlorella Virus 1
1
N
N
1
N
N
A
ASN
40
A
ASN
40
HELX_P
A
LEU
47
A
LEU
47
1
1
8
A
PHE
64
A
PHE
64
HELX_P
A
HIS
70
A
HIS
70
1
2
7
B
ASN
40
B
ASN
40
HELX_P
B
LEU
47
B
LEU
47
1
3
8
B
PHE
64
B
PHE
64
HELX_P
B
HIS
70
B
HIS
70
1
4
7
TRANSFERASE
Beta barrel, homodimer, TRANSFERASE
O41094_CHVP1
UNP
1
1
O41094
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL
TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
1
119
1N3J
1
119
O41094
A
1
1
119
1
119
1N3J
1
119
O41094
B
1
1
119
3
3
3
3
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
6
A
VAL
6
A
LYS
9
A
LYS
9
A
GLY
17
A
GLY
17
A
ALA
20
A
ALA
20
A
GLU
99
A
GLU
99
A
ILE
101
A
ILE
101
A
GLU
28
A
GLU
28
A
VAL
30
A
VAL
30
A
MET
87
A
MET
87
A
THR
91
A
THR
91
A
ARG
77
A
ARG
77
A
LEU
80
A
LEU
80
A
ILE
36
A
ILE
36
A
ARG
38
A
ARG
38
A
MET
57
A
MET
57
A
ALA
61
A
ALA
61
A
TYR
50
A
TYR
50
A
ARG
54
A
ARG
54
B
VAL
6
B
VAL
6
B
LYS
9
B
LYS
9
B
GLY
17
B
GLY
17
B
ALA
20
B
ALA
20
B
GLU
99
B
GLU
99
B
ILE
101
B
ILE
101
B
GLU
28
B
GLU
28
B
VAL
30
B
VAL
30
B
MET
87
B
MET
87
B
THR
91
B
THR
91
B
ARG
77
B
ARG
77
B
LEU
80
B
LEU
80
B
ILE
36
B
ILE
36
B
ARG
38
B
ARG
38
B
MET
57
B
MET
57
B
ALA
61
B
ALA
61
B
TYR
50
B
TYR
50
B
ARG
54
B
ARG
54