1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Manzur, K.L. Farooq, A. Zeng, L. Plotnikova, O. Sachchidanand Koch, A.W. Zhou, M.-M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 187 196 10.1038/nsb898 12567185 A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3. 2003 10.2210/pdb1n3j/pdb pdb_00001n3j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 13606.623 Histone H3 Lysine Methyltransferase 2 man polymer A612L no no MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Chlorovirus Escherichia Escherichia coli sample A612L 10506 Paramecium bursaria Chlorella virus 1 469008 Escherichia coli BL21(DE3) BL21(DE3) Plasmid pET22b database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-01-28 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2002-10-28 REL mimized average structure 200 1 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 3D_13C-filtered_13C-separated_NOESY 1M 6.5 1 atm 310 K distance geometry simulated annealing molecular dynamics minimized average structure 0.5mM Protein, 50mM Sodium phosphate, 700mM NaCl, 300mM Urea, 0.1mM EDTA, 5mM DTT-d10 90% H2O/10% D2O processing NMRPipe 3.1 structure solution X-PLOR 3.1 collection XwinNMR 3.1 structure solution ARIA 1.1 Brunger refinement X-PLOR 3.1 600 Bruker DRX MET 1 n 1 MET 1 A PHE 2 n 2 PHE 2 A ASN 3 n 3 ASN 3 A ASP 4 n 4 ASP 4 A ARG 5 n 5 ARG 5 A VAL 6 n 6 VAL 6 A ILE 7 n 7 ILE 7 A VAL 8 n 8 VAL 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A SER 11 n 11 SER 11 A PRO 12 n 12 PRO 12 A LEU 13 n 13 LEU 13 A GLY 14 n 14 GLY 14 A GLY 15 n 15 GLY 15 A TYR 16 n 16 TYR 16 A GLY 17 n 17 GLY 17 A VAL 18 n 18 VAL 18 A PHE 19 n 19 PHE 19 A ALA 20 n 20 ALA 20 A ARG 21 n 21 ARG 21 A LYS 22 n 22 LYS 22 A SER 23 n 23 SER 23 A PHE 24 n 24 PHE 24 A GLU 25 n 25 GLU 25 A LYS 26 n 26 LYS 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A LEU 29 n 29 LEU 29 A VAL 30 n 30 VAL 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A CYS 33 n 33 CYS 33 A LEU 34 n 34 LEU 34 A CYS 35 n 35 CYS 35 A ILE 36 n 36 ILE 36 A VAL 37 n 37 VAL 37 A ARG 38 n 38 ARG 38 A HIS 39 n 39 HIS 39 A ASN 40 n 40 ASN 40 A ASP 41 n 41 ASP 41 A ASP 42 n 42 ASP 42 A TRP 43 n 43 TRP 43 A GLY 44 n 44 GLY 44 A THR 45 n 45 THR 45 A ALA 46 n 46 ALA 46 A LEU 47 n 47 LEU 47 A GLU 48 n 48 GLU 48 A ASP 49 n 49 ASP 49 A TYR 50 n 50 TYR 50 A LEU 51 n 51 LEU 51 A PHE 52 n 52 PHE 52 A SER 53 n 53 SER 53 A ARG 54 n 54 ARG 54 A LYS 55 n 55 LYS 55 A ASN 56 n 56 ASN 56 A MET 57 n 57 MET 57 A SER 58 n 58 SER 58 A ALA 59 n 59 ALA 59 A MET 60 n 60 MET 60 A ALA 61 n 61 ALA 61 A LEU 62 n 62 LEU 62 A GLY 63 n 63 GLY 63 A PHE 64 n 64 PHE 64 A GLY 65 n 65 GLY 65 A ALA 66 n 66 ALA 66 A ILE 67 n 67 ILE 67 A PHE 68 n 68 PHE 68 A ASN 69 n 69 ASN 69 A HIS 70 n 70 HIS 70 A SER 71 n 71 SER 71 A LYS 72 n 72 LYS 72 A ASP 73 n 73 ASP 73 A PRO 74 n 74 PRO 74 A ASN 75 n 75 ASN 75 A ALA 76 n 76 ALA 76 A ARG 77 n 77 ARG 77 A HIS 78 n 78 HIS 78 A GLU 79 n 79 GLU 79 A LEU 80 n 80 LEU 80 A THR 81 n 81 THR 81 A ALA 82 n 82 ALA 82 A GLY 83 n 83 GLY 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A ARG 86 n 86 ARG 86 A MET 87 n 87 MET 87 A ARG 88 n 88 ARG 88 A ILE 89 n 89 ILE 89 A PHE 90 n 90 PHE 90 A THR 91 n 91 THR 91 A ILE 92 n 92 ILE 92 A LYS 93 n 93 LYS 93 A PRO 94 n 94 PRO 94 A ILE 95 n 95 ILE 95 A ALA 96 n 96 ALA 96 A ILE 97 n 97 ILE 97 A GLY 98 n 98 GLY 98 A GLU 99 n 99 GLU 99 A GLU 100 n 100 GLU 100 A ILE 101 n 101 ILE 101 A THR 102 n 102 THR 102 A ILE 103 n 103 ILE 103 A SER 104 n 104 SER 104 A TYR 105 n 105 TYR 105 A GLY 106 n 106 GLY 106 A ASP 107 n 107 ASP 107 A ASP 108 n 108 ASP 108 A TYR 109 n 109 TYR 109 A TRP 110 n 110 TRP 110 A LEU 111 n 111 LEU 111 A SER 112 n 112 SER 112 A ARG 113 n 113 ARG 113 A PRO 114 n 114 PRO 114 A ARG 115 n 115 ARG 115 A LEU 116 n 116 LEU 116 A THR 117 n 117 THR 117 A GLN 118 n 118 GLN 118 A ASN 119 n 119 ASN 119 A MET 1 n 1 MET 1 B PHE 2 n 2 PHE 2 B ASN 3 n 3 ASN 3 B ASP 4 n 4 ASP 4 B ARG 5 n 5 ARG 5 B VAL 6 n 6 VAL 6 B ILE 7 n 7 ILE 7 B VAL 8 n 8 VAL 8 B LYS 9 n 9 LYS 9 B LYS 10 n 10 LYS 10 B SER 11 n 11 SER 11 B PRO 12 n 12 PRO 12 B LEU 13 n 13 LEU 13 B GLY 14 n 14 GLY 14 B GLY 15 n 15 GLY 15 B TYR 16 n 16 TYR 16 B GLY 17 n 17 GLY 17 B VAL 18 n 18 VAL 18 B PHE 19 n 19 PHE 19 B ALA 20 n 20 ALA 20 B ARG 21 n 21 ARG 21 B LYS 22 n 22 LYS 22 B SER 23 n 23 SER 23 B PHE 24 n 24 PHE 24 B GLU 25 n 25 GLU 25 B LYS 26 n 26 LYS 26 B GLY 27 n 27 GLY 27 B GLU 28 n 28 GLU 28 B LEU 29 n 29 LEU 29 B VAL 30 n 30 VAL 30 B GLU 31 n 31 GLU 31 B GLU 32 n 32 GLU 32 B CYS 33 n 33 CYS 33 B LEU 34 n 34 LEU 34 B CYS 35 n 35 CYS 35 B ILE 36 n 36 ILE 36 B VAL 37 n 37 VAL 37 B ARG 38 n 38 ARG 38 B HIS 39 n 39 HIS 39 B ASN 40 n 40 ASN 40 B ASP 41 n 41 ASP 41 B ASP 42 n 42 ASP 42 B TRP 43 n 43 TRP 43 B GLY 44 n 44 GLY 44 B THR 45 n 45 THR 45 B ALA 46 n 46 ALA 46 B LEU 47 n 47 LEU 47 B GLU 48 n 48 GLU 48 B ASP 49 n 49 ASP 49 B TYR 50 n 50 TYR 50 B LEU 51 n 51 LEU 51 B PHE 52 n 52 PHE 52 B SER 53 n 53 SER 53 B ARG 54 n 54 ARG 54 B LYS 55 n 55 LYS 55 B ASN 56 n 56 ASN 56 B MET 57 n 57 MET 57 B SER 58 n 58 SER 58 B ALA 59 n 59 ALA 59 B MET 60 n 60 MET 60 B ALA 61 n 61 ALA 61 B LEU 62 n 62 LEU 62 B GLY 63 n 63 GLY 63 B PHE 64 n 64 PHE 64 B GLY 65 n 65 GLY 65 B ALA 66 n 66 ALA 66 B ILE 67 n 67 ILE 67 B PHE 68 n 68 PHE 68 B ASN 69 n 69 ASN 69 B HIS 70 n 70 HIS 70 B SER 71 n 71 SER 71 B LYS 72 n 72 LYS 72 B ASP 73 n 73 ASP 73 B PRO 74 n 74 PRO 74 B ASN 75 n 75 ASN 75 B ALA 76 n 76 ALA 76 B ARG 77 n 77 ARG 77 B HIS 78 n 78 HIS 78 B GLU 79 n 79 GLU 79 B LEU 80 n 80 LEU 80 B THR 81 n 81 THR 81 B ALA 82 n 82 ALA 82 B GLY 83 n 83 GLY 83 B LEU 84 n 84 LEU 84 B LYS 85 n 85 LYS 85 B ARG 86 n 86 ARG 86 B MET 87 n 87 MET 87 B ARG 88 n 88 ARG 88 B ILE 89 n 89 ILE 89 B PHE 90 n 90 PHE 90 B THR 91 n 91 THR 91 B ILE 92 n 92 ILE 92 B LYS 93 n 93 LYS 93 B PRO 94 n 94 PRO 94 B ILE 95 n 95 ILE 95 B ALA 96 n 96 ALA 96 B ILE 97 n 97 ILE 97 B GLY 98 n 98 GLY 98 B GLU 99 n 99 GLU 99 B GLU 100 n 100 GLU 100 B ILE 101 n 101 ILE 101 B THR 102 n 102 THR 102 B ILE 103 n 103 ILE 103 B SER 104 n 104 SER 104 B TYR 105 n 105 TYR 105 B GLY 106 n 106 GLY 106 B ASP 107 n 107 ASP 107 B ASP 108 n 108 ASP 108 B TYR 109 n 109 TYR 109 B TRP 110 n 110 TRP 110 B LEU 111 n 111 LEU 111 B SER 112 n 112 SER 112 B ARG 113 n 113 ARG 113 B PRO 114 n 114 PRO 114 B ARG 115 n 115 ARG 115 B LEU 116 n 116 LEU 116 B THR 117 n 117 THR 117 B GLN 118 n 118 GLN 118 B ASN 119 n 119 ASN 119 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 9 A N LYS 9 A O GLY 17 A O GLY 17 A N ALA 20 A N ALA 20 A O GLU 99 A O GLU 99 A N GLU 28 A N GLU 28 A O THR 91 A O THR 91 A O ARG 88 A O ARG 88 A N GLU 79 A N GLU 79 A N ARG 38 A N ARG 38 A O SER 58 A O SER 58 A O ALA 59 A O ALA 59 A N PHE 52 A N PHE 52 B N LYS 9 B N LYS 9 B O GLY 17 B O GLY 17 B N ALA 20 B N ALA 20 B O GLU 99 B O GLU 99 B N GLU 28 B N GLU 28 B O THR 91 B O THR 91 B O ARG 88 B O ARG 88 B N GLU 79 B N GLU 79 B N ARG 38 B N ARG 38 B O SER 58 B O SER 58 B O ALA 59 B O ALA 59 B N PHE 52 B N PHE 52 1 A LEU 13 -175.23 33.21 1 A ARG 21 -111.24 70.21 1 A LYS 22 -173.39 89.70 1 A LYS 26 -53.48 106.27 1 A GLU 32 -165.56 -161.92 1 A CYS 33 -174.82 57.20 1 A LEU 34 -150.85 51.69 1 A GLU 48 -44.19 92.56 1 A ASP 49 -149.50 -107.79 1 A TYR 50 -104.29 65.98 1 A LYS 55 60.37 -76.73 1 A ALA 61 -129.67 -163.31 1 A LEU 62 -172.52 61.75 1 A HIS 70 -63.54 81.38 1 A PRO 74 -67.52 96.21 1 A GLU 79 -150.80 88.47 1 A LYS 85 60.91 -127.15 1 A ARG 86 -175.58 -151.78 1 A ILE 97 39.48 34.78 1 A THR 102 -137.92 -145.48 1 A SER 104 56.58 107.92 1 A TYR 105 -160.99 67.86 1 A ASP 107 -148.79 -65.33 1 A TYR 109 -59.13 107.80 1 A SER 112 -174.30 31.52 1 A ARG 113 53.44 85.28 1 A THR 117 -58.52 87.82 1 A GLN 118 57.64 -83.57 1 B LEU 13 -175.40 33.18 1 B ARG 21 -111.26 70.21 1 B LYS 22 -173.44 89.71 1 B LYS 26 -53.37 106.21 1 B GLU 32 -165.56 -161.90 1 B CYS 33 -174.83 57.20 1 B LEU 34 -150.88 51.70 1 B GLU 48 -44.13 92.47 1 B ASP 49 -149.39 -107.72 1 B TYR 50 -104.33 65.75 1 B LYS 55 60.37 -76.80 1 B ALA 61 -129.77 -163.27 1 B LEU 62 -172.54 61.74 1 B HIS 70 -63.59 81.38 1 B PRO 74 -67.53 96.23 1 B GLU 79 -151.07 88.53 1 B LYS 85 60.78 -127.25 1 B ARG 86 -175.48 -151.75 1 B ILE 97 39.49 34.71 1 B THR 102 -137.99 -145.36 1 B SER 104 56.55 107.95 1 B TYR 105 -161.01 67.90 1 B ASP 107 -148.79 -65.34 1 B TYR 109 -59.20 107.91 1 B SER 112 -174.24 31.58 1 B ARG 113 53.39 85.30 1 B THR 117 -58.57 87.76 1 B GLN 118 57.77 -83.66 minimized average Structure and Substrate of a Histone H3 Lysine Methyltransferase from Paramecium Bursaria Chlorella Virus 1 1 N N 1 N N A ASN 40 A ASN 40 HELX_P A LEU 47 A LEU 47 1 1 8 A PHE 64 A PHE 64 HELX_P A HIS 70 A HIS 70 1 2 7 B ASN 40 B ASN 40 HELX_P B LEU 47 B LEU 47 1 3 8 B PHE 64 B PHE 64 HELX_P B HIS 70 B HIS 70 1 4 7 TRANSFERASE Beta barrel, homodimer, TRANSFERASE O41094_CHVP1 UNP 1 1 O41094 MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHEL TAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN 1 119 1N3J 1 119 O41094 A 1 1 119 1 119 1N3J 1 119 O41094 B 1 1 119 3 3 3 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 6 A VAL 6 A LYS 9 A LYS 9 A GLY 17 A GLY 17 A ALA 20 A ALA 20 A GLU 99 A GLU 99 A ILE 101 A ILE 101 A GLU 28 A GLU 28 A VAL 30 A VAL 30 A MET 87 A MET 87 A THR 91 A THR 91 A ARG 77 A ARG 77 A LEU 80 A LEU 80 A ILE 36 A ILE 36 A ARG 38 A ARG 38 A MET 57 A MET 57 A ALA 61 A ALA 61 A TYR 50 A TYR 50 A ARG 54 A ARG 54 B VAL 6 B VAL 6 B LYS 9 B LYS 9 B GLY 17 B GLY 17 B ALA 20 B ALA 20 B GLU 99 B GLU 99 B ILE 101 B ILE 101 B GLU 28 B GLU 28 B VAL 30 B VAL 30 B MET 87 B MET 87 B THR 91 B THR 91 B ARG 77 B ARG 77 B LEU 80 B LEU 80 B ILE 36 B ILE 36 B ARG 38 B ARG 38 B MET 57 B MET 57 B ALA 61 B ALA 61 B TYR 50 B TYR 50 B ARG 54 B ARG 54