0.047371
0.000000
0.000000
0.000000
0.018515
0.000000
0.000000
0.000000
0.013479
0.00000
0.00000
0.00000
Park, H.
Zhang, K.
Ren, Y.
Nadji, S.
Sinha, N.
Taylor, J.-S.
Kang, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90
90
90
21.11
54.01
74.19
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
99
15965
15970
10.1073/pnas.242422699
12456887
Crystal structure of a DNA decamer containing a cis-syn thymine dimer.
2002
10.2210/pdb1n4e/pdb
pdb_00001n4e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
IMAGE PLATE
1999-01-01
RIGAKU RAXIS IIC
Ni Filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
3035.003
5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3'
2
syn
polymer
3053.031
5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'
2
syn
polymer
18.015
water
56
nat
water
no
no
(DG)(DC)(DT)(DT)(DA)(DA)(DT)(DT)(DC)(DG)
GCTTAATTCG
A,C
polydeoxyribonucleotide
no
no
(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG)(DC)
CGAATTAAGC
B,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
VAPOR DIFFUSION, HANGING DROP
7.5
MgCl2, HEPES-Na, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
MgCl2
1
HEPES-Na
1
PEG 400
1
MgCl2
2
1.984
1
19
A
1
B
20
1.626
A_DG1:DC20_B
1
-3.475
-1.139
0.021
-0.581
-9.402
1
19
A
2
B
19
-6.049
A_DC2:DG19_B
2
-14.836
0.683
0.353
-0.824
-3.567
1
20
A
3
B
18
-6.228
A_DT3:DA18_B
3
-10.730
0.100
0.016
-0.523
15.321
1
20
A
4
B
17
1.069
A_DT4:DA17_B
4
-10.064
-0.261
-0.421
-0.593
17.630
1
20
A
5
B
16
-8.976
A_DA5:DT16_B
5
-0.194
0.015
0.398
-0.601
-29.687
1
20
A
6
B
15
-7.025
A_DA6:DT15_B
6
-25.899
0.057
-1.428
-0.144
4.083
1
20
A
7
B
14
-2.911
A_DT7:DA14_B
7
-20.879
0.255
-0.098
-0.431
18.005
1
19
A
9
B
12
-1.618
A_DC9:DG12_B
8
-21.441
1.299
-0.568
-0.998
10.996
1
19
A
10
B
11
-8.321
A_DG10:DC11_B
9
-3.259
-0.405
0.527
-0.694
2.914
1
19
C
101
D
120
-6.699
C_DG101:DC120_D
10
-4.817
-0.078
-0.106
-0.353
-6.300
1
19
C
102
D
119
7.169
C_DC102:DG119_D
11
-7.266
-0.070
0.578
-0.102
-2.665
1
20
C
103
D
118
-2.240
C_DT103:DA118_D
12
-10.889
0.456
-0.020
-0.166
2.106
1
20
C
104
D
117
0.596
C_DT104:DA117_D
13
-11.672
0.376
0.400
-0.543
16.112
1
20
C
105
D
116
-4.441
C_DA105:DT116_D
14
0.873
-0.121
0.616
-0.646
-34.254
1
20
C
106
D
115
7.517
C_DA106:DT115_D
15
-23.950
0.726
-1.390
-0.660
-7.368
1
20
C
107
D
114
3.407
C_DT107:DA114_D
16
-22.984
0.705
0.521
-0.619
0.011
1
20
C
108
D
113
-7.780
C_DT108:DA113_D
17
-17.335
0.457
0.008
-0.480
11.423
1
19
C
109
D
112
3.304
C_DC109:DG112_D
18
-21.043
0.825
-0.239
-0.409
7.408
1
19
C
110
D
111
-8.513
C_DG110:DC111_D
19
5.889
0.970
-0.010
-0.395
3.565
47.227
A
A
1
2
-5.033
B
B
20
19
3.546
-4.027
-0.904
-0.072
AA_DG1DC2:DG19DC20_BB
1
-1.433
1.791
47.044
0.268
1.002
2.913
31.487
A
A
2
3
13.056
B
B
19
18
3.046
7.018
-0.454
-0.023
AA_DC2DT3:DA18DG19_BB
2
2.970
-5.525
30.574
-1.255
1.349
2.706
30.761
A
A
3
4
-6.794
B
B
18
17
2.739
-3.595
0.394
0.246
AA_DT3DT4:DA17DA18_BB
3
1.139
-2.152
30.535
1.051
-0.556
2.961
40.249
A
A
4
5
5.049
B
B
17
16
3.063
3.467
1.371
0.346
AA_DT4DA5:DT16DA17_BB
4
-3.385
4.931
39.969
0.140
-2.346
1.935
39.625
A
A
5
6
45.073
B
B
16
15
4.314
26.452
-1.343
-0.065
AA_DA5DA6:DT15DT16_BB
5
18.278
-31.144
23.471
-3.887
4.601
1.855
29.051
A
A
6
7
3.808
B
B
15
14
2.513
1.813
0.505
-0.221
AA_DA6DT7:DA14DT15_BB
6
-15.488
32.521
24.588
-0.729
-3.478
6.258
85.245
A
A
7
9
4.649
B
B
14
12
6.287
6.282
-0.267
0.751
AA_DT7DC9:DG12DA14_BB
7
10.976
-8.124
84.480
0.277
0.683
3.489
29.532
A
A
9
10
9.344
B
B
12
11
3.502
4.681
-0.329
0.493
AA_DC9DG10:DC11DG12_BB
8
-8.319
16.605
27.980
-0.127
-1.298
3.253
30.610
C
C
101
102
-3.517
D
D
120
119
3.315
-1.851
0.508
-0.558
CC_DG101DC102:DG119DC120_DD
9
-3.908
7.426
30.310
-0.688
-1.741
2.847
33.077
C
C
102
103
2.633
D
D
119
118
2.957
1.494
-0.564
-0.208
CC_DC102DT103:DA118DG119_DD
10
4.405
-7.762
32.758
-0.590
1.653
2.978
37.048
C
C
103
104
10.610
D
D
118
117
3.050
6.706
1.020
-0.007
CC_DT103DT104:DA117DA118_DD
11
-0.870
1.377
36.447
-0.847
-1.713
2.763
38.216
C
C
104
105
-4.754
D
D
117
116
2.736
-3.109
0.605
-0.591
CC_DT104DA105:DT116DA117_DD
12
-0.656
1.002
38.089
-0.573
-0.993
2.464
44.914
C
C
105
106
30.721
D
D
116
115
4.241
21.456
-1.201
-0.221
CC_DA105DA106:DT115DT116_DD
13
22.339
-31.985
32.932
-2.629
4.008
2.179
31.251
C
C
106
107
2.828
D
D
115
114
2.709
1.400
-0.224
-0.533
CC_DA106DT107:DA114DT115_DD
14
-20.573
41.547
23.611
-1.217
-2.932
2.749
35.116
C
C
107
108
5.779
D
D
114
113
2.880
3.477
-1.244
-0.037
CC_DT107DT108:DA113DA114_DD
15
3.010
-5.002
34.823
-0.510
2.451
2.939
34.595
C
C
108
109
10.146
D
D
113
112
2.858
5.981
0.246
0.701
CC_DT108DC109:DG112DA113_DD
16
5.403
-9.165
33.671
0.350
0.336
3.422
43.493
C
C
109
110
-5.015
D
D
112
111
3.409
-3.705
-1.144
1.003
CC_DC109DG110:DC111DG112_DD
17
-5.055
6.843
43.061
1.730
1.031
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-02-04
1
1
2008-04-28
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
RCSB
Y
RCSB
2002-10-30
REL
HOH
water
HOH
204
3
HOH
HOH
204
A
HOH
207
3
HOH
HOH
207
A
HOH
209
3
HOH
HOH
209
A
HOH
211
3
HOH
HOH
211
A
HOH
218
3
HOH
HOH
218
A
HOH
223
3
HOH
HOH
223
A
HOH
229
3
HOH
HOH
229
A
HOH
231
3
HOH
HOH
231
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
239
3
HOH
HOH
239
A
HOH
242
3
HOH
HOH
242
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
201
3
HOH
HOH
201
B
HOH
202
3
HOH
HOH
202
B
HOH
203
3
HOH
HOH
203
B
HOH
213
3
HOH
HOH
213
B
HOH
217
3
HOH
HOH
217
B
HOH
220
3
HOH
HOH
220
B
HOH
221
3
HOH
HOH
221
B
HOH
225
3
HOH
HOH
225
B
HOH
236
3
HOH
HOH
236
B
HOH
243
3
HOH
HOH
243
B
HOH
210
3
HOH
HOH
210
C
HOH
214
3
HOH
HOH
214
C
HOH
215
3
HOH
HOH
215
C
HOH
224
3
HOH
HOH
224
C
HOH
226
3
HOH
HOH
226
C
HOH
230
3
HOH
HOH
230
C
HOH
235
3
HOH
HOH
235
C
HOH
237
3
HOH
HOH
237
C
HOH
241
3
HOH
HOH
241
C
HOH
247
3
HOH
HOH
247
C
HOH
249
3
HOH
HOH
249
C
HOH
252
3
HOH
HOH
252
C
HOH
205
3
HOH
HOH
205
D
HOH
206
3
HOH
HOH
206
D
HOH
208
3
HOH
HOH
208
D
HOH
212
3
HOH
HOH
212
D
HOH
216
3
HOH
HOH
216
D
HOH
219
3
HOH
HOH
219
D
HOH
222
3
HOH
HOH
222
D
HOH
227
3
HOH
HOH
227
D
HOH
228
3
HOH
HOH
228
D
HOH
232
3
HOH
HOH
232
D
HOH
238
3
HOH
HOH
238
D
HOH
240
3
HOH
HOH
240
D
HOH
246
3
HOH
HOH
246
D
HOH
248
3
HOH
HOH
248
D
HOH
255
3
HOH
HOH
255
D
HOH
256
3
HOH
HOH
256
D
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
T
3
n
3
DT
3
A
T
4
n
4
DT
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
1
DC
11
B
G
12
n
2
DG
12
B
A
13
n
3
DA
13
B
A
14
n
4
DA
14
B
T
15
n
5
DT
15
B
T
16
n
6
DT
16
B
A
17
n
7
DA
17
B
A
18
n
8
DA
18
B
G
19
n
9
DG
19
B
C
20
n
10
DC
20
B
G
101
n
1
DG
101
C
C
102
n
2
DC
102
C
T
103
n
3
DT
103
C
T
104
n
4
DT
104
C
A
105
n
5
DA
105
C
A
106
n
6
DA
106
C
T
107
n
7
DT
107
C
T
108
n
8
DT
108
C
C
109
n
9
DC
109
C
G
110
n
10
DG
110
C
C
111
n
1
DC
111
D
G
112
n
2
DG
112
D
A
113
n
3
DA
113
D
A
114
n
4
DA
114
D
T
115
n
5
DT
115
D
T
116
n
6
DT
116
D
A
117
n
7
DA
117
D
A
118
n
8
DA
118
D
G
119
n
9
DG
119
D
C
120
n
10
DC
120
D
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
2
0.070
SIDE CHAIN
1
A
DG
10
0.055
SIDE CHAIN
1
B
DC
11
0.069
SIDE CHAIN
1
C
DA
105
0.062
SIDE CHAIN
1
D
DG
112
0.077
SIDE CHAIN
1
D
DG
119
0.054
SIDE CHAIN
1
-5.91
0.80
105.90
99.99
A
A
A
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
1
5.63
0.30
108.30
113.93
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
-2.41
0.40
106.40
103.99
A
A
A
C8
N9
C4
DG
DG
DG
1
1
1
N
1
-5.68
0.40
104.50
98.82
A
A
A
O4'
C4'
C3'
DC
DC
DC
2
2
2
N
1
-4.72
0.70
108.00
103.28
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-5.52
0.80
109.40
103.88
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
-4.86
0.70
108.00
103.14
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-20.56
1.90
104.00
83.44
A
A
A
O3'
P
O5'
DT
DA
DA
4
5
5
Y
1
-7.90
0.80
109.40
101.50
A
A
A
O5'
C5'
C4'
DA
DA
DA
5
5
5
N
1
-5.88
0.40
104.50
98.62
A
A
A
O4'
C4'
C3'
DA
DA
DA
5
5
5
N
1
-6.31
1.00
110.10
103.79
A
A
A
C1'
O4'
C4'
DA
DA
DA
5
5
5
N
1
4.89
0.30
108.30
113.19
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
4.60
0.60
118.60
123.20
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
1
-6.33
0.80
123.70
117.37
A
A
A
C5
C6
N6
DA
DA
DA
5
5
5
N
1
10.16
1.20
119.70
129.86
A
A
A
C3'
O3'
P
DA
DA
DA
5
5
6
Y
1
6.16
0.30
108.30
114.46
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-3.80
0.50
129.30
125.50
A
A
A
N1
C2
N3
DA
DA
DA
6
6
6
N
1
-8.18
0.80
102.40
94.22
A
A
A
C3'
C2'
C1'
DT
DT
DT
7
7
7
N
1
-5.81
0.40
104.50
98.69
A
A
A
O4'
C4'
C3'
DT
DT
DT
8
8
8
N
1
6.65
1.10
109.80
116.45
A
A
A
C5'
C4'
O4'
DT
DT
DT
8
8
8
N
1
5.84
0.70
110.30
116.14
A
A
A
C1'
O4'
C4'
DT
DT
DT
8
8
8
N
1
-5.20
0.70
102.20
97.00
A
A
A
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
1
9.78
1.20
102.50
112.28
A
A
A
C3'
C2'
C1'
DT
DT
DT
8
8
8
N
1
-12.62
0.80
105.90
93.28
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
1
-3.46
0.50
121.30
117.84
A
A
A
C6
N1
C2
DT
DT
DT
8
8
8
N
1
5.56
0.60
114.60
120.16
A
A
A
N1
C2
N3
DT
DT
DT
8
8
8
N
1
5.26
0.60
118.00
123.26
A
A
A
C4
C5
C6
DT
DT
DT
8
8
8
N
1
-7.80
0.60
122.30
114.50
A
A
A
N3
C2
O2
DT
DT
DT
8
8
8
N
1
-6.90
0.60
119.00
112.10
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
1
8.49
1.20
119.70
128.19
A
A
A
C3'
O3'
P
DT
DT
DC
8
8
9
Y
1
-6.27
0.70
108.00
101.73
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
4.25
0.60
106.00
110.25
A
A
A
O4'
C4'
C3'
DG
DG
DG
10
10
10
N
1
-9.59
1.00
110.10
100.51
A
A
A
C1'
O4'
C4'
DG
DG
DG
10
10
10
N
1
7.04
0.50
106.80
113.84
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
1
-4.63
0.50
111.90
107.27
A
A
A
C2
N3
C4
DG
DG
DG
10
10
10
N
1
-3.45
0.50
104.30
100.85
A
A
A
C5
N7
C8
DG
DG
DG
10
10
10
N
1
3.79
0.60
119.90
123.69
A
A
A
N1
C6
O6
DG
DG
DG
10
10
10
N
1
-8.46
0.40
104.50
96.04
B
B
B
O4'
C4'
C3'
DC
DC
DC
11
11
11
N
1
-9.45
0.80
102.40
92.95
B
B
B
C3'
C2'
C1'
DC
DC
DC
11
11
11
N
1
-7.01
0.70
108.00
100.99
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
4.64
0.40
120.30
124.94
B
B
B
C6
N1
C2
DC
DC
DC
11
11
11
N
1
-6.51
0.70
119.20
112.69
B
B
B
N1
C2
N3
DC
DC
DC
11
11
11
N
1
4.32
0.50
119.90
124.22
B
B
B
C2
N3
C4
DC
DC
DC
11
11
11
N
1
3.03
0.40
121.90
124.93
B
B
B
N3
C4
C5
DC
DC
DC
11
11
11
N
1
-6.15
0.50
117.40
111.25
B
B
B
C4
C5
C6
DC
DC
DC
11
11
11
N
1
3.69
0.60
118.90
122.59
B
B
B
N1
C2
O2
DC
DC
DC
11
11
11
N
1
4.22
0.70
118.00
122.22
B
B
B
N3
C4
N4
DC
DC
DC
11
11
11
N
1
-7.97
0.70
120.20
112.23
B
B
B
C5
C4
N4
DC
DC
DC
11
11
11
N
1
12.94
1.20
119.70
132.64
B
B
B
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
3.71
0.60
106.00
109.71
B
B
B
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
1
-10.00
1.00
110.10
100.10
B
B
B
C1'
O4'
C4'
DG
DG
DG
12
12
12
N
1
-8.43
0.80
102.40
93.97
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
1
6.78
0.50
106.80
113.58
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
3.62
0.50
128.60
132.22
B
B
B
N3
C4
C5
DG
DG
DG
12
12
12
N
1
-3.80
0.60
128.60
124.80
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
9.75
1.30
127.00
136.75
B
B
B
C8
N9
C1'
DG
DG
DG
12
12
12
N
1
-11.16
1.30
126.50
115.34
B
B
B
C4
N9
C1'
DG
DG
DG
12
12
12
N
1
-15.88
1.90
104.00
88.12
B
B
B
O3'
P
O5'
DG
DA
DA
12
13
13
Y
1
-7.13
0.80
109.40
102.27
B
B
B
O5'
C5'
C4'
DA
DA
DA
13
13
13
N
1
8.35
1.20
102.50
110.85
B
B
B
C3'
C2'
C1'
DA
DA
DA
13
13
13
N
1
3.75
0.30
108.30
112.05
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
11.52
1.20
119.70
131.22
B
B
B
C3'
O3'
P
DA
DA
DA
13
13
14
Y
1
9.51
0.30
108.30
117.81
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
-8.51
0.70
108.00
99.49
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-6.28
0.60
123.70
117.42
B
B
B
C5
C6
N1
DT
DT
DT
15
15
15
N
1
-15.03
0.60
119.00
103.97
B
B
B
C4
C5
C7
DT
DT
DT
15
15
15
N
1
-10.07
0.60
122.90
112.83
B
B
B
C6
C5
C7
DT
DT
DT
15
15
15
N
1
-12.38
1.00
110.10
97.72
B
B
B
C1'
O4'
C4'
DT
DT
DT
16
16
16
N
1
-5.30
0.80
102.40
97.10
B
B
B
C3'
C2'
C1'
DT
DT
DT
16
16
16
N
1
13.35
0.30
108.30
121.65
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
-4.47
0.60
119.90
115.43
B
B
B
N3
C4
O4
DT
DT
DT
16
16
16
N
1
4.20
0.70
124.90
129.10
B
B
B
C5
C4
O4
DT
DT
DT
16
16
16
N
1
-10.17
0.60
119.00
108.83
B
B
B
C4
C5
C7
DT
DT
DT
16
16
16
N
1
9.05
1.50
120.40
129.45
B
B
B
C6
N1
C1'
DT
DT
DT
16
16
16
N
1
-12.04
1.20
119.70
107.66
B
B
B
C3'
O3'
P
DT
DT
DA
16
16
17
Y
1
-16.32
1.90
104.00
87.68
B
B
B
O3'
P
O5'
DT
DA
DA
16
17
17
Y
1
-4.30
0.40
104.50
100.20
B
B
B
O4'
C4'
C3'
DA
DA
DA
17
17
17
N
1
-4.89
0.50
110.60
105.71
B
B
B
C2
N3
C4
DA
DA
DA
17
17
17
N
1
-14.53
1.90
104.00
89.47
B
B
B
O3'
P
O5'
DA
DA
DA
17
18
18
Y
1
2.62
0.30
108.30
110.92
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
1
-10.47
1.20
119.70
109.23
B
B
B
C3'
O3'
P
DA
DA
DG
18
18
19
Y
1
-2.89
0.40
104.50
101.61
B
B
B
O4'
C4'
C3'
DG
DG
DG
19
19
19
N
1
-17.78
0.80
105.90
88.12
B
B
B
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
1
4.56
0.30
108.30
112.86
B
B
B
O4'
C1'
N9
DG
DG
DG
19
19
19
N
1
2.68
0.40
110.80
113.48
B
B
B
C4
C5
N7
DG
DG
DG
19
19
19
N
1
-3.81
0.50
104.30
100.49
B
B
B
C5
N7
C8
DG
DG
DG
19
19
19
N
1
3.32
0.50
113.10
116.42
B
B
B
N7
C8
N9
DG
DG
DG
19
19
19
N
1
-2.83
0.40
106.40
103.57
B
B
B
C8
N9
C4
DG
DG
DG
19
19
19
N
1
-13.36
1.90
104.00
90.64
B
B
B
O3'
P
O5'
DG
DC
DC
19
20
20
Y
1
-6.85
0.40
104.50
97.65
B
B
B
O4'
C4'
C3'
DC
DC
DC
20
20
20
N
1
-7.86
0.80
105.90
98.04
B
B
B
O4'
C1'
C2'
DC
DC
DC
20
20
20
N
1
2.12
0.30
108.30
110.42
C
C
C
O4'
C1'
N9
DG
DG
DG
101
101
101
N
1
7.45
1.20
119.70
127.15
C
C
C
C3'
O3'
P
DG
DG
DC
101
101
102
Y
1
-13.04
1.80
114.10
101.06
C
C
C
C5'
C4'
C3'
DC
DC
DC
102
102
102
N
1
7.28
1.10
109.80
117.08
C
C
C
C5'
C4'
O4'
DC
DC
DC
102
102
102
N
1
-5.98
0.80
105.90
99.92
C
C
C
O4'
C1'
C2'
DC
DC
DC
102
102
102
N
1
4.01
0.30
108.30
112.31
C
C
C
O4'
C1'
N1
DC
DC
DC
102
102
102
N
1
4.41
0.50
119.90
124.31
C
C
C
C2
N3
C4
DC
DC
DC
102
102
102
N
1
-3.57
0.40
121.90
118.33
C
C
C
N3
C4
C5
DC
DC
DC
102
102
102
N
1
3.31
0.50
121.00
124.31
C
C
C
C5
C6
N1
DC
DC
DC
102
102
102
N
1
5.36
0.70
118.00
123.36
C
C
C
N3
C4
N4
DC
DC
DC
102
102
102
N
1
-14.10
1.90
104.00
89.90
C
C
C
O3'
P
O5'
DC
DT
DT
102
103
103
Y
1
5.45
0.30
108.30
113.75
C
C
C
O4'
C1'
N1
DT
DT
DT
103
103
103
N
1
4.99
0.60
119.00
123.99
C
C
C
C4
C5
C7
DT
DT
DT
103
103
103
N
1
-6.58
0.60
122.90
116.32
C
C
C
C6
C5
C7
DT
DT
DT
103
103
103
N
1
-3.30
0.40
104.50
101.20
C
C
C
O4'
C4'
C3'
DT
DT
DT
104
104
104
N
1
-9.43
0.80
102.40
92.97
C
C
C
C3'
C2'
C1'
DT
DT
DT
104
104
104
N
1
-5.84
0.80
102.40
96.56
C
C
C
C3'
C2'
C1'
DA
DA
DA
105
105
105
N
1
3.96
0.50
106.80
110.76
C
C
C
O4'
C1'
C2'
DA
DA
DA
105
105
105
N
1
3.61
0.60
118.60
122.21
C
C
C
N1
C6
N6
DA
DA
DA
105
105
105
N
1
-6.15
0.80
123.70
117.55
C
C
C
C5
C6
N6
DA
DA
DA
105
105
105
N
1
-8.02
0.80
109.40
101.38
C
C
C
O5'
C5'
C4'
DA
DA
DA
106
106
106
N
1
3.81
0.60
118.60
122.41
C
C
C
C6
N1
C2
DA
DA
DA
106
106
106
N
1
-3.05
0.50
117.70
114.65
C
C
C
C5
C6
N1
DA
DA
DA
106
106
106
N
1
14.57
1.20
119.70
134.27
C
C
C
C3'
O3'
P
DA
DA
DT
106
106
107
Y
1
5.58
0.30
108.30
113.88
C
C
C
O4'
C1'
N1
DT
DT
DT
107
107
107
N
1
-4.49
0.50
121.30
116.81
C
C
C
C6
N1
C2
DT
DT
DT
107
107
107
N
1
4.62
0.60
114.60
119.22
C
C
C
N1
C2
N3
DT
DT
DT
107
107
107
N
1
4.09
0.60
118.00
122.09
C
C
C
C4
C5
C6
DT
DT
DT
107
107
107
N
1
-4.04
0.60
119.00
114.96
C
C
C
C4
C5
C7
DT
DT
DT
107
107
107
N
1
-7.18
0.80
105.90
98.72
C
C
C
O4'
C1'
C2'
DT
DT
DT
108
108
108
N
1
3.06
0.30
108.30
111.36
C
C
C
O4'
C1'
N1
DT
DT
DT
108
108
108
N
1
3.63
0.60
118.00
121.63
C
C
C
C4
C5
C6
DT
DT
DT
108
108
108
N
1
-5.79
0.80
105.90
100.11
C
C
C
O4'
C1'
C2'
DC
DC
DC
109
109
109
N
1
4.66
0.60
106.00
110.66
C
C
C
O4'
C4'
C3'
DG
DG
DG
110
110
110
N
1
-5.56
0.70
102.20
96.64
C
C
C
C4'
C3'
C2'
DG
DG
DG
110
110
110
N
1
8.58
1.20
102.50
111.08
C
C
C
C3'
C2'
C1'
DG
DG
DG
110
110
110
N
1
-5.22
0.80
105.90
100.68
C
C
C
O4'
C1'
C2'
DG
DG
DG
110
110
110
N
1
2.28
0.30
108.30
110.58
C
C
C
O4'
C1'
N9
DG
DG
DG
110
110
110
N
1
3.34
0.50
113.10
116.44
C
C
C
N7
C8
N9
DG
DG
DG
110
110
110
N
1
-2.49
0.40
106.40
103.91
C
C
C
C8
N9
C4
DG
DG
DG
110
110
110
N
1
-4.93
0.70
119.90
114.97
C
C
C
N3
C2
N2
DG
DG
DG
110
110
110
N
1
4.10
0.60
119.90
124.00
C
C
C
N1
C6
O6
DG
DG
DG
110
110
110
N
1
-8.96
1.00
110.10
101.14
D
D
D
C1'
O4'
C4'
DC
DC
DC
111
111
111
N
1
-8.67
0.80
105.90
97.23
D
D
D
O4'
C1'
C2'
DC
DC
DC
111
111
111
N
1
4.14
0.30
108.30
112.44
D
D
D
O4'
C1'
N1
DC
DC
DC
111
111
111
N
1
4.09
0.60
118.90
122.99
D
D
D
N1
C2
O2
DC
DC
DC
111
111
111
N
1
-4.31
0.70
121.90
117.59
D
D
D
N3
C2
O2
DC
DC
DC
111
111
111
N
1
-10.66
0.80
109.40
98.74
D
D
D
O5'
C5'
C4'
DG
DG
DG
112
112
112
N
1
4.60
0.50
106.80
111.40
D
D
D
O4'
C1'
C2'
DG
DG
DG
112
112
112
N
1
5.21
0.30
108.30
113.51
D
D
D
O4'
C1'
N9
DG
DG
DG
112
112
112
N
1
-4.15
0.50
104.30
100.15
D
D
D
C5
N7
C8
DG
DG
DG
112
112
112
N
1
7.32
1.20
119.70
127.02
D
D
D
C3'
O3'
P
DG
DG
DA
112
112
113
Y
1
-11.49
1.90
104.00
92.51
D
D
D
O3'
P
O5'
DG
DA
DA
112
113
113
Y
1
-5.35
0.80
105.90
100.55
D
D
D
O4'
C1'
C2'
DA
DA
DA
113
113
113
N
1
3.49
0.30
108.30
111.79
D
D
D
O4'
C1'
N9
DA
DA
DA
113
113
113
N
1
-2.66
0.40
105.80
103.14
D
D
D
C8
N9
C4
DA
DA
DA
113
113
113
N
1
7.16
0.90
103.10
110.26
D
D
D
C4'
C3'
C2'
DA
DA
DA
114
114
114
N
1
-5.22
0.80
102.40
97.18
D
D
D
C3'
C2'
C1'
DA
DA
DA
114
114
114
N
1
2.60
0.40
105.80
108.40
D
D
D
C8
N9
C4
DA
DA
DA
114
114
114
N
1
-7.16
1.00
110.10
102.94
D
D
D
C1'
O4'
C4'
DT
DT
DT
115
115
115
N
1
-5.89
0.80
105.90
100.01
D
D
D
O4'
C1'
C2'
DT
DT
DT
115
115
115
N
1
-12.21
0.70
108.00
95.79
D
D
D
O4'
C1'
N1
DT
DT
DT
115
115
115
N
1
-4.94
0.60
123.70
118.76
D
D
D
C5
C6
N1
DT
DT
DT
115
115
115
N
1
-16.64
0.60
119.00
102.36
D
D
D
C4
C5
C7
DT
DT
DT
115
115
115
N
1
-7.62
0.60
122.90
115.28
D
D
D
C6
C5
C7
DT
DT
DT
115
115
115
N
1
-11.98
1.00
110.10
98.12
D
D
D
C1'
O4'
C4'
DT
DT
DT
116
116
116
N
1
-5.19
0.80
102.40
97.21
D
D
D
C3'
C2'
C1'
DT
DT
DT
116
116
116
N
1
9.78
0.30
108.30
118.08
D
D
D
O4'
C1'
N1
DT
DT
DT
116
116
116
N
1
3.89
0.60
114.60
118.49
D
D
D
N1
C2
N3
DT
DT
DT
116
116
116
N
1
-3.78
0.60
119.90
116.12
D
D
D
N3
C4
O4
DT
DT
DT
116
116
116
N
1
-10.18
0.60
119.00
108.82
D
D
D
C4
C5
C7
DT
DT
DT
116
116
116
N
1
10.70
1.50
120.40
131.10
D
D
D
C6
N1
C1'
DT
DT
DT
116
116
116
N
1
-9.63
1.60
118.20
108.57
D
D
D
C2
N1
C1'
DT
DT
DT
116
116
116
N
1
-12.30
1.20
119.70
107.40
D
D
D
C3'
O3'
P
DT
DT
DA
116
116
117
Y
1
5.83
0.30
108.30
114.13
D
D
D
O4'
C1'
N9
DA
DA
DA
117
117
117
N
1
4.60
0.60
118.60
123.20
D
D
D
N1
C6
N6
DA
DA
DA
117
117
117
N
1
-3.75
0.40
104.50
100.75
D
D
D
O4'
C4'
C3'
DA
DA
DA
118
118
118
N
1
-4.86
0.80
102.40
97.54
D
D
D
C3'
C2'
C1'
DA
DA
DA
118
118
118
N
1
-11.09
1.60
120.90
109.81
D
D
D
P
O5'
C5'
DG
DG
DG
119
119
119
N
1
7.96
0.30
108.30
116.26
D
D
D
O4'
C1'
N9
DG
DG
DG
119
119
119
N
1
-2.62
0.40
106.40
103.78
D
D
D
C8
N9
C4
DG
DG
DG
119
119
119
N
1
-9.22
0.40
104.50
95.28
D
D
D
O4'
C4'
C3'
DC
DC
DC
120
120
120
N
1
-5.03
0.80
105.90
100.87
D
D
D
O4'
C1'
C2'
DC
DC
DC
120
120
120
N
1
-4.92
0.70
108.00
103.08
D
D
D
O4'
C1'
N1
DC
DC
DC
120
120
120
N
1
A
A
C4'
C3'
DG
DG
1
1
-0.064
0.010
1.521
1.457
N
1
A
A
O3'
C3'
DG
DG
1
1
-0.067
0.006
1.419
1.352
N
1
A
A
C5'
C4'
DC
DC
2
2
0.046
0.007
1.512
1.558
N
1
A
A
C2'
C1'
DC
DC
2
2
-0.124
0.010
1.518
1.394
N
1
A
A
C6
N1
DT
DT
3
3
-0.073
0.007
1.378
1.305
N
1
A
A
C5
C7
DT
DT
3
3
0.045
0.006
1.496
1.541
N
1
A
A
P
O5'
DT
DT
4
4
-0.088
0.010
1.593
1.505
N
1
A
A
C3'
C2'
DA
DA
5
5
-0.067
0.008
1.516
1.449
N
1
A
A
C4
C5
DA
DA
5
5
-0.050
0.007
1.383
1.333
N
1
A
A
C5
C6
DA
DA
5
5
-0.055
0.009
1.406
1.351
N
1
A
A
O3'
P
DA
DA
5
6
-0.101
0.012
1.607
1.506
Y
1
A
A
C4
C5
DA
DA
6
6
-0.056
0.007
1.383
1.327
N
1
A
A
C8
N9
DA
DA
6
6
-0.056
0.008
1.373
1.317
N
1
A
A
C5'
C4'
DT
DT
7
7
-0.092
0.011
1.509
1.417
N
1
A
A
C2'
C1'
DT
DT
7
7
-0.075
0.010
1.518
1.443
N
1
A
A
C4'
C3'
DT
DT
8
8
-0.092
0.010
1.521
1.429
N
1
A
A
C5
C6
DT
DT
8
8
0.049
0.007
1.339
1.388
N
1
A
A
C5
C7
DT
DT
8
8
0.055
0.006
1.496
1.551
N
1
A
A
C3'
C2'
DG
DG
10
10
-0.084
0.008
1.516
1.432
N
1
A
A
N9
C4
DG
DG
10
10
-0.071
0.008
1.375
1.304
N
1
B
B
C3'
C2'
DC
DC
11
11
-0.067
0.008
1.516
1.449
N
1
B
B
O4'
C4'
DC
DC
11
11
-0.061
0.010
1.446
1.385
N
1
B
B
N1
C2
DC
DC
11
11
-0.099
0.010
1.397
1.298
N
1
B
B
C2
N3
DC
DC
11
11
-0.092
0.008
1.353
1.261
N
1
B
B
C4
C5
DC
DC
11
11
-0.091
0.008
1.425
1.334
N
1
B
B
O3'
P
DC
DG
11
12
-0.112
0.012
1.607
1.495
Y
1
B
B
P
O5'
DG
DG
12
12
-0.087
0.010
1.593
1.506
N
1
B
B
C4
C5
DG
DG
12
12
-0.043
0.007
1.379
1.336
N
1
B
B
C5
C6
DG
DG
12
12
-0.097
0.010
1.419
1.322
N
1
B
B
N9
C4
DG
DG
12
12
-0.060
0.008
1.375
1.315
N
1
B
B
O3'
P
DG
DA
12
13
-0.086
0.012
1.607
1.521
Y
1
B
B
C3'
C2'
DA
DA
13
13
-0.067
0.008
1.516
1.449
N
1
B
B
O3'
C3'
DA
DA
14
14
-0.042
0.006
1.419
1.377
N
1
B
B
C6
N1
DA
DA
14
14
-0.048
0.007
1.351
1.303
N
1
B
B
C2
N3
DT
DT
15
15
-0.058
0.008
1.373
1.315
N
1
B
B
C5
C7
DT
DT
15
15
0.117
0.006
1.496
1.613
N
1
B
B
C5
C6
DT
DT
16
16
-0.048
0.007
1.339
1.291
N
1
B
B
C5
C7
DT
DT
16
16
0.073
0.006
1.496
1.569
N
1
B
B
C5
C6
DA
DA
17
17
-0.072
0.009
1.406
1.334
N
1
B
B
C6
N1
DA
DA
17
17
-0.060
0.007
1.351
1.291
N
1
B
B
N9
C4
DA
DA
17
17
-0.045
0.006
1.374
1.329
N
1
B
B
P
O5'
DA
DA
18
18
-0.063
0.010
1.593
1.530
N
1
B
B
O3'
C3'
DA
DA
18
18
-0.043
0.006
1.419
1.376
N
1
B
B
N1
C2
DA
DA
18
18
-0.056
0.009
1.339
1.283
N
1
B
B
C4
C5
DA
DA
18
18
-0.046
0.007
1.383
1.337
N
1
B
B
C5
C6
DA
DA
18
18
-0.064
0.009
1.406
1.342
N
1
B
B
O3'
C3'
DG
DG
19
19
-0.051
0.006
1.419
1.368
N
1
B
B
O3'
P
DG
DC
19
20
-0.075
0.012
1.607
1.532
Y
1
B
B
C4'
C3'
DC
DC
20
20
-0.073
0.010
1.521
1.448
N
1
B
B
O4'
C4'
DC
DC
20
20
-0.080
0.010
1.446
1.366
N
1
C
C
C4'
C3'
DG
DG
101
101
-0.061
0.010
1.521
1.460
N
1
C
C
O3'
C3'
DG
DG
101
101
-0.057
0.006
1.419
1.362
N
1
C
C
C4'
C3'
DC
DC
102
102
-0.090
0.010
1.521
1.431
N
1
C
C
C3'
C2'
DC
DC
102
102
-0.068
0.008
1.516
1.448
N
1
C
C
O3'
P
DC
DT
102
103
-0.079
0.012
1.607
1.528
Y
1
C
C
C2'
C1'
DT
DT
103
103
-0.066
0.010
1.518
1.452
N
1
C
C
O4'
C4'
DT
DT
103
103
-0.063
0.010
1.446
1.383
N
1
C
C
C5
C7
DT
DT
103
103
0.042
0.006
1.496
1.538
N
1
C
C
C5'
C4'
DA
DA
105
105
-0.074
0.011
1.509
1.435
N
1
C
C
N9
C4
DA
DA
105
105
-0.058
0.006
1.374
1.316
N
1
C
C
C2
N3
DA
DA
106
106
-0.055
0.009
1.331
1.276
N
1
C
C
C4
C5
DA
DA
106
106
-0.043
0.007
1.383
1.340
N
1
C
C
C6
N1
DA
DA
106
106
-0.044
0.007
1.351
1.307
N
1
C
C
C5
C7
DT
DT
107
107
0.043
0.006
1.496
1.539
N
1
C
C
C6
N1
DT
DT
108
108
-0.052
0.007
1.378
1.326
N
1
C
C
C5
C7
DT
DT
108
108
0.037
0.006
1.496
1.533
N
1
C
C
C5'
C4'
DC
DC
109
109
0.046
0.007
1.512
1.558
N
1
C
C
O3'
C3'
DC
DC
109
109
-0.045
0.006
1.419
1.374
N
1
C
C
N3
C4
DC
DC
109
109
-0.049
0.007
1.335
1.286
N
1
D
D
N1
C6
DC
DC
111
111
-0.043
0.006
1.367
1.324
N
1
D
D
P
O5'
DG
DG
112
112
-0.135
0.010
1.593
1.458
N
1
D
D
C5'
C4'
DG
DG
112
112
-0.071
0.011
1.509
1.438
N
1
D
D
C3'
C2'
DG
DG
112
112
-0.086
0.008
1.516
1.430
N
1
D
D
C2'
C1'
DG
DG
112
112
-0.083
0.010
1.518
1.435
N
1
D
D
O3'
C3'
DG
DG
112
112
-0.042
0.006
1.419
1.377
N
1
D
D
N3
C4
DG
DG
112
112
-0.045
0.007
1.350
1.305
N
1
D
D
N9
C4
DG
DG
112
112
-0.077
0.008
1.375
1.298
N
1
D
D
O3'
P
DG
DA
112
113
-0.097
0.012
1.607
1.510
Y
1
D
D
P
O5'
DA
DA
113
113
-0.090
0.010
1.593
1.503
N
1
D
D
O3'
C3'
DA
DA
113
113
-0.045
0.006
1.419
1.374
N
1
D
D
N3
C4
DA
DA
113
113
-0.037
0.006
1.344
1.307
N
1
D
D
O3'
P
DA
DA
113
114
-0.121
0.012
1.607
1.486
Y
1
D
D
C2'
C1'
DA
DA
114
114
-0.072
0.010
1.518
1.446
N
1
D
D
O3'
C3'
DA
DA
114
114
-0.092
0.006
1.419
1.327
N
1
D
D
C1'
N9
DA
DA
114
114
-0.090
0.014
1.468
1.378
N
1
D
D
C5
C6
DA
DA
114
114
-0.064
0.009
1.406
1.342
N
1
D
D
N9
C4
DA
DA
114
114
-0.054
0.006
1.374
1.320
N
1
D
D
O3'
P
DA
DT
114
115
-0.078
0.012
1.607
1.529
Y
1
D
D
C2
N3
DT
DT
115
115
-0.057
0.008
1.373
1.316
N
1
D
D
C5
C7
DT
DT
115
115
0.051
0.006
1.496
1.547
N
1
D
D
C5
C6
DT
DT
116
116
-0.043
0.007
1.339
1.296
N
1
D
D
C5
C7
DT
DT
116
116
0.073
0.006
1.496
1.569
N
1
D
D
N9
C4
DA
DA
117
117
-0.040
0.006
1.374
1.334
N
1
D
D
C4'
C3'
DG
DG
119
119
-0.066
0.010
1.521
1.455
N
1
D
D
O4'
C4'
DC
DC
120
120
-0.068
0.010
1.446
1.378
N
0.255
0.197
2.5
10
159
3220
3061
5.0
1
random
2
MOLECULAR REPLACEMENT
2.5
10
56
864
0
808
0
0.302
0.252
2.61
14
2.3
20
1N4E
5775
4616
1
1
1
88.6
2.3
2.39
76.4
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
Crystal Structure of a DNA Decamer Containing a Thymine-dimer
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.510
none
B
DT
15
B
C5
DT
5
1_555
B
DT
16
B
C5
DT
6
1_555
covale
1.542
none
B
DT
15
B
C6
DT
5
1_555
B
DT
16
B
C6
DT
6
1_555
covale
1.520
none
D
DT
115
D
C5
DT
5
1_555
D
DT
116
D
C5
DT
6
1_555
covale
1.533
none
D
DT
115
D
C6
DT
5
1_555
D
DT
116
D
C6
DT
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
20
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
20
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
20
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
18
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
18
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
17
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
17
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
16
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
16
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
15
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
15
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
14
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
14
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
12
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
12
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
12
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
11
B
N4
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
101
C
N1
DG
1
1_555
D
DC
120
D
N3
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
101
C
N2
DG
1
1_555
D
DC
120
D
O2
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
101
C
O6
DG
1
1_555
D
DC
120
D
N4
DC
10
1_555
hydrog
WATSON-CRICK
C
DC
102
C
N3
DC
2
1_555
D
DG
119
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
102
C
N4
DC
2
1_555
D
DG
119
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
102
C
O2
DC
2
1_555
D
DG
119
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
C
DT
103
C
N3
DT
3
1_555
D
DA
118
D
N1
DA
8
1_555
hydrog
WATSON-CRICK
C
DT
103
C
O4
DT
3
1_555
D
DA
118
D
N6
DA
8
1_555
hydrog
WATSON-CRICK
C
DT
104
C
N3
DT
4
1_555
D
DA
117
D
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
104
C
O4
DT
4
1_555
D
DA
117
D
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
DA
105
C
N1
DA
5
1_555
D
DT
116
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
105
C
N6
DA
5
1_555
D
DT
116
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
106
C
N1
DA
6
1_555
D
DT
115
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
106
C
N6
DA
6
1_555
D
DT
115
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DT
107
C
N3
DT
7
1_555
D
DA
114
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
107
C
O4
DT
7
1_555
D
DA
114
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
108
C
N3
DT
8
1_555
D
DA
113
D
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
108
C
O4
DT
8
1_555
D
DA
113
D
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DC
109
C
N3
DC
9
1_555
D
DG
112
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
109
C
N4
DC
9
1_555
D
DG
112
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
109
C
O2
DC
9
1_555
D
DG
112
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DG
110
C
N1
DG
10
1_555
D
DC
111
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
110
C
N2
DG
10
1_555
D
DC
111
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
110
C
O6
DG
10
1_555
D
DC
111
D
N4
DC
1
1_555
DNA
UV-damaged DNA, Thymine dimer, DNA decamer, DNA
1N4E
PDB
1
1N4E
1N4E
PDB
2
1N4E
1
10
1N4E
1
10
1N4E
A
1
1
10
11
20
1N4E
11
20
1N4E
B
2
1
10
101
110
1N4E
101
110
1N4E
C
1
1
10
111
120
1N4E
111
120
1N4E
D
2
1
10
19
P 21 21 21