0.018379
0.000000
0.000000
0.000000
0.006839
0.000000
0.000000
0.000000
0.021378
0.00000
0.00000
0.00000
Cote, M.L.
Pflomm, M.
Georgiadis, M.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.410
146.222
46.778
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
330
57
74
10.1016/S0022-2836(03)00554-0
12818202
Staying Straight with A-tracts: A DNA Analog of the HIV-1 Polypurine Tract
2003
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
296
613
632
10.1006/jmbi.1999.3477
Crystal Structures of an N-terminal Fragment from Moloney Murine
Leukemia Virus Reverse Transcriptase Complexed with Nucleic Acid:
Functional Implications for Template-primer Binding to the Fingers
Domain
2000
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
1120
1131
10.1107/S0907444900008246
Use of an N-terminal fragment from Moloney murine leukemia virus
reverse transcriptase to facilitate crystallization and analysis of a
pseudo-16-mer DNA molecule containing G-A mispairs
2000
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1238
1250
10.1107/S090744490100943X
Structure of a pseudo-16-mer DNA with stacked guanines and two G-A
mispairs coomplexed with the N-terminal fragment of Moloney murine
leukemia virus reverse transcriptase
2001
10.2210/pdb1n4l/pdb
pdb_00001n4l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
108
1
108
1
CCD
2002-02-02
ADSC QUANTUM 315
Yale mirrors
IMAGE PLATE
2001-04-05
RIGAKU RAXIS IV
Si 111 Channel
SINGLE WAVELENGTH
M
x-ray
1
Ni Filter
SINGLE WAVELENGTH
M
x-ray
1
1.1123
1.0
1.5418
1.0
X25
NSLS
1.1123
SYNCHROTRON
NSLS BEAMLINE X25
1.5418
ROTATING ANODE
RIGAKU
4929.254
5'-D(*CP*TP*TP*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'
1
syn
polymer
4862.188
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*G)-3'
1
syn
polymer
part of Pol polyprotein
28934.287
Reverse Transcriptase
2.7.7.49
1
man
polymer
18.015
water
145
nat
water
MMLV RT
E.C.2.7.7.49
no
no
(DC)(DT)(DT)(DT)(DT)(DT)(DA)(DA)(DA)(DA)(DG)(DA)(DA)(DA)(DA)(DG)
CTTTTTAAAAGAAAAG
B
polydeoxyribonucleotide
no
no
(DC)(DT)(DT)(DT)(DT)(DC)(DT)(DT)(DT)(DT)(DA)(DA)(DA)(DA)(DA)(DG)
CTTTTCTTTTAAAAAG
D
polydeoxyribonucleotide
no
no
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gammaretrovirus
Murine leukemia virus
Escherichia
Escherichia coli
sample
11801
Moloney murine leukemia virus
511693
Escherichia coli BL21
BL21
Plasmid
pET15b
2
2.35
47.1
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 4000, NaCl, ADA, MgCl2, HEPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP at 277K
277
NaCl
1
MgCl2
1
ADA
1
HEPES
1
PEG 4000
1
NaCl
2
MgCl2
2
ADA
2
HEPES
2
PEG 4000
2
-18.905
1
19
B
1
B
16
-6.605
B_DC1:DG16_B
1
0.491
-0.789
0.003
-0.190
-11.538
1
20
B
2
B
15
0.880
B_DT2:DA15_B
2
-1.824
-0.425
0.010
-0.298
1.564
B
3
B
14
10.309
B_DT3:DA14_B
3
-14.576
-1.216
-0.027
0.742
1.997
1
20
B
4
B
13
2.671
B_DT4:DA13_B
4
-16.656
-1.083
-0.091
-0.123
10.621
1
20
B
5
B
12
-8.849
B_DT5:DA12_B
5
-1.719
-0.389
-0.381
0.059
2.340
1
27
B
6
B
11
-11.812
B_DT6:DG11_B
6
-8.221
0.113
-0.279
-0.200
-0.806
1
1
B
7
B
10
4.324
B_DA7:DA10_B
7
-9.835
0.850
0.285
0.601
2.896
1
1
B
8
B
9
-9.089
B_DA8:DA9_B
8
-1.986
0.459
-0.265
0.484
-2.896
1
1
B
9
B
8
-9.089
B_DA9:DA8_B
9
-1.986
-0.459
-0.265
0.484
0.806
1
1
B
10
B
7
4.324
B_DA10:DA7_B
10
-9.835
-0.850
0.285
0.601
-2.340
1
27
B
11
B
6
-11.812
B_DG11:DT6_B
11
-8.221
-0.113
-0.279
-0.200
-10.621
1
20
B
12
B
5
-8.849
B_DA12:DT5_B
12
-1.719
0.389
-0.381
0.059
-1.997
1
20
B
13
B
4
2.671
B_DA13:DT4_B
13
-16.656
1.083
-0.091
-0.123
-1.564
B
14
B
3
10.309
B_DA14:DT3_B
14
-14.576
1.216
-0.027
0.742
11.538
1
20
B
15
B
2
0.880
B_DA15:DT2_B
15
-1.824
0.425
0.010
-0.298
18.905
1
19
B
16
B
1
-6.605
B_DG16:DC1_B
16
0.491
0.789
0.003
-0.190
-18.905
1
19
D
17
D
32
-6.605
D_DC17:DG32_D
17
0.491
-0.789
0.003
-0.190
-11.538
1
20
D
18
D
31
0.880
D_DT18:DA31_D
18
-1.824
-0.425
0.010
-0.298
1.564
D
19
D
30
10.309
D_DT19:DA30_D
19
-14.576
-1.216
-0.027
0.742
1.997
1
20
D
20
D
29
2.671
D_DT20:DA29_D
20
-16.656
-1.083
-0.091
-0.123
10.621
1
20
D
21
D
28
-8.849
D_DT21:DA28_D
21
-1.719
-0.389
-0.381
0.059
-0.049
D
22
D
27
-7.663
D_DC22:DA27_D
22
-11.839
1.465
0.090
-0.295
-18.905
1
19
D
17
D
32
-6.605
D_DC17:DG32_D
23
0.491
-0.789
0.003
-0.190
-11.538
1
20
D
18
D
31
0.880
D_DT18:DA31_D
24
-1.824
-0.425
0.010
-0.298
1.564
D
19
D
30
10.309
D_DT19:DA30_D
25
-14.576
-1.216
-0.027
0.742
1.997
1
20
D
20
D
29
2.671
D_DT20:DA29_D
26
-16.656
-1.083
-0.091
-0.123
10.621
1
20
D
21
D
28
-8.849
D_DT21:DA28_D
27
-1.719
-0.389
-0.381
0.059
-0.049
D
22
D
27
-7.663
D_DC22:DA27_D
28
-11.839
1.465
0.090
-0.295
3.301
35.567
B
B
1
2
8.635
B
B
16
15
3.331
5.256
0.313
0.106
BB_DC1DT2:DA15DG16_BB
1
-1.062
1.745
35.174
-0.607
-0.671
2.816
26.744
B
B
2
3
6.918
B
B
15
14
2.911
3.192
0.136
-0.667
BB_DT2DT3:DA14DA15_BB
2
0.841
-1.823
26.543
-2.171
-0.103
3.120
35.938
B
B
3
4
5.126
B
B
14
13
3.151
3.159
0.121
-0.221
BB_DT3DT4:DA13DA14_BB
3
-0.132
0.215
35.803
-0.791
-0.215
3.085
35.205
B
B
4
5
7.087
B
B
13
12
3.138
4.275
-0.038
-0.231
BB_DT4DT5:DA12DA13_BB
4
1.585
-2.627
34.918
-0.989
0.287
3.394
41.088
B
B
5
6
-6.131
B
B
12
11
3.393
-4.295
0.137
-0.224
BB_DT5DT6:DG11DA12_BB
5
-1.127
1.609
40.858
0.166
-0.323
3.320
38.727
B
B
6
7
2.840
B
B
11
10
3.348
1.882
0.965
-0.537
BB_DT6DA7:DA10DG11_BB
6
0.001
-0.001
38.683
-1.045
-1.455
3.029
33.299
B
B
7
8
-5.516
B
B
10
9
3.129
-3.150
-0.849
-0.266
BB_DA7DA8:DA9DA10_BB
7
3.738
-6.545
32.948
0.033
2.070
3.382
29.598
B
B
8
9
-4.646
B
B
9
8
3.356
-2.371
0.000
-0.459
BB_DA8DA9:DA8DA9_BB
8
0.000
0.000
29.505
-0.382
0.000
3.029
33.299
B
B
9
10
-5.516
B
B
8
7
3.129
-3.150
0.849
-0.266
BB_DA9DA10:DA7DA8_BB
9
-3.738
6.545
32.948
0.033
-2.070
3.320
38.727
B
B
10
11
2.840
B
B
7
6
3.348
1.882
-0.965
-0.537
BB_DA10DG11:DT6DA7_BB
10
-0.001
0.001
38.683
-1.045
1.455
3.394
41.088
B
B
11
12
-6.131
B
B
6
5
3.393
-4.295
-0.137
-0.224
BB_DG11DA12:DT5DT6_BB
11
1.127
-1.609
40.858
0.166
0.323
3.085
35.205
B
B
12
13
7.087
B
B
5
4
3.138
4.275
0.038
-0.231
BB_DA12DA13:DT4DT5_BB
12
-1.585
2.627
34.918
-0.989
-0.287
3.120
35.938
B
B
13
14
5.126
B
B
4
3
3.151
3.159
-0.121
-0.221
BB_DA13DA14:DT3DT4_BB
13
0.132
-0.215
35.803
-0.791
0.215
2.816
26.744
B
B
14
15
6.918
B
B
3
2
2.911
3.192
-0.136
-0.667
BB_DA14DA15:DT2DT3_BB
14
-0.841
1.823
26.543
-2.171
0.103
3.301
35.567
B
B
15
16
8.635
B
B
2
1
3.331
5.256
-0.313
0.106
BB_DA15DG16:DC1DT2_BB
15
1.062
-1.745
35.174
-0.607
0.671
3.301
35.567
D
D
17
18
8.635
D
D
32
31
3.331
5.256
0.313
0.106
DD_DC17DT18:DA31DG32_DD
16
-1.062
1.745
35.174
-0.607
-0.671
2.816
26.744
D
D
18
19
6.918
D
D
31
30
2.911
3.192
0.136
-0.667
DD_DT18DT19:DA30DA31_DD
17
0.841
-1.823
26.543
-2.171
-0.103
3.120
35.938
D
D
19
20
5.126
D
D
30
29
3.151
3.159
0.121
-0.221
DD_DT19DT20:DA29DA30_DD
18
-0.132
0.215
35.803
-0.791
-0.215
3.085
35.205
D
D
20
21
7.087
D
D
29
28
3.138
4.275
-0.038
-0.231
DD_DT20DT21:DA28DA29_DD
19
1.585
-2.627
34.918
-0.989
0.287
3.482
46.316
D
D
21
22
-5.289
D
D
28
27
3.532
-4.149
0.305
-0.048
DD_DT21DC22:DA27DA28_DD
20
-4.440
5.659
45.938
0.318
-0.794
3.301
35.567
D
D
17
18
8.635
D
D
32
31
3.331
5.256
0.313
0.106
DD_DC17DT18:DA31DG32_DD
21
-1.062
1.745
35.174
-0.607
-0.671
2.816
26.744
D
D
18
19
6.918
D
D
31
30
2.911
3.192
0.136
-0.667
DD_DT18DT19:DA30DA31_DD
22
0.841
-1.823
26.543
-2.171
-0.103
3.120
35.938
D
D
19
20
5.126
D
D
30
29
3.151
3.159
0.121
-0.221
DD_DT19DT20:DA29DA30_DD
23
-0.132
0.215
35.803
-0.791
-0.215
3.085
35.205
D
D
20
21
7.087
D
D
29
28
3.138
4.275
-0.038
-0.231
DD_DT20DT21:DA28DA29_DD
24
1.585
-2.627
34.918
-0.989
0.287
3.482
46.316
D
D
21
22
-5.289
D
D
28
27
3.532
-4.149
0.305
-0.048
DD_DT21DC22:DA27DA28_DD
25
-4.440
5.659
45.938
0.318
-0.794
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Other
Structure summary
Data collection
Database references
Refinement description
1
0
2003-06-24
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-01-11
1
4
2017-02-01
1
5
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2002-10-31
REL
REL
HOH
water
1D1U
PDB ENTRY 1D1U
PDB
experimental model
HOH
15
4
HOH
HOH
15
D
HOH
33
4
HOH
HOH
33
D
HOH
1
4
HOH
HOH
279
A
HOH
2
4
HOH
HOH
280
A
HOH
3
4
HOH
HOH
281
A
HOH
4
4
HOH
HOH
282
A
HOH
5
4
HOH
HOH
283
A
HOH
6
4
HOH
HOH
284
A
HOH
7
4
HOH
HOH
285
A
HOH
8
4
HOH
HOH
286
A
HOH
9
4
HOH
HOH
287
A
HOH
10
4
HOH
HOH
288
A
HOH
11
4
HOH
HOH
289
A
HOH
12
4
HOH
HOH
290
A
HOH
13
4
HOH
HOH
291
A
HOH
14
4
HOH
HOH
292
A
HOH
16
4
HOH
HOH
293
A
HOH
17
4
HOH
HOH
294
A
HOH
18
4
HOH
HOH
295
A
HOH
19
4
HOH
HOH
296
A
HOH
20
4
HOH
HOH
297
A
HOH
21
4
HOH
HOH
298
A
HOH
22
4
HOH
HOH
299
A
HOH
23
4
HOH
HOH
300
A
HOH
24
4
HOH
HOH
301
A
HOH
25
4
HOH
HOH
302
A
HOH
26
4
HOH
HOH
303
A
HOH
27
4
HOH
HOH
304
A
HOH
28
4
HOH
HOH
305
A
HOH
29
4
HOH
HOH
306
A
HOH
30
4
HOH
HOH
307
A
HOH
31
4
HOH
HOH
308
A
HOH
32
4
HOH
HOH
309
A
HOH
34
4
HOH
HOH
310
A
HOH
35
4
HOH
HOH
311
A
HOH
36
4
HOH
HOH
312
A
HOH
37
4
HOH
HOH
313
A
HOH
38
4
HOH
HOH
314
A
HOH
39
4
HOH
HOH
315
A
HOH
40
4
HOH
HOH
316
A
HOH
41
4
HOH
HOH
317
A
HOH
42
4
HOH
HOH
318
A
HOH
43
4
HOH
HOH
319
A
HOH
44
4
HOH
HOH
320
A
HOH
45
4
HOH
HOH
321
A
HOH
46
4
HOH
HOH
322
A
HOH
47
4
HOH
HOH
323
A
HOH
48
4
HOH
HOH
324
A
HOH
49
4
HOH
HOH
325
A
HOH
50
4
HOH
HOH
326
A
HOH
51
4
HOH
HOH
327
A
HOH
52
4
HOH
HOH
328
A
HOH
53
4
HOH
HOH
329
A
HOH
54
4
HOH
HOH
330
A
HOH
55
4
HOH
HOH
331
A
HOH
56
4
HOH
HOH
332
A
HOH
57
4
HOH
HOH
333
A
HOH
58
4
HOH
HOH
334
A
HOH
59
4
HOH
HOH
335
A
HOH
60
4
HOH
HOH
336
A
HOH
61
4
HOH
HOH
337
A
HOH
62
4
HOH
HOH
338
A
HOH
63
4
HOH
HOH
339
A
HOH
64
4
HOH
HOH
340
A
HOH
65
4
HOH
HOH
341
A
HOH
66
4
HOH
HOH
342
A
HOH
67
4
HOH
HOH
343
A
HOH
68
4
HOH
HOH
344
A
HOH
69
4
HOH
HOH
345
A
HOH
70
4
HOH
HOH
346
A
HOH
71
4
HOH
HOH
347
A
HOH
72
4
HOH
HOH
348
A
HOH
73
4
HOH
HOH
349
A
HOH
74
4
HOH
HOH
350
A
HOH
75
4
HOH
HOH
351
A
HOH
76
4
HOH
HOH
352
A
HOH
77
4
HOH
HOH
353
A
HOH
78
4
HOH
HOH
354
A
HOH
79
4
HOH
HOH
355
A
HOH
80
4
HOH
HOH
356
A
HOH
81
4
HOH
HOH
357
A
HOH
82
4
HOH
HOH
358
A
HOH
83
4
HOH
HOH
359
A
HOH
84
4
HOH
HOH
360
A
HOH
85
4
HOH
HOH
361
A
HOH
86
4
HOH
HOH
362
A
HOH
87
4
HOH
HOH
363
A
HOH
88
4
HOH
HOH
364
A
HOH
89
4
HOH
HOH
365
A
HOH
90
4
HOH
HOH
366
A
HOH
91
4
HOH
HOH
367
A
HOH
92
4
HOH
HOH
368
A
HOH
93
4
HOH
HOH
369
A
HOH
94
4
HOH
HOH
370
A
HOH
95
4
HOH
HOH
371
A
HOH
96
4
HOH
HOH
372
A
HOH
97
4
HOH
HOH
373
A
HOH
98
4
HOH
HOH
374
A
HOH
99
4
HOH
HOH
375
A
HOH
100
4
HOH
HOH
376
A
HOH
101
4
HOH
HOH
377
A
HOH
102
4
HOH
HOH
378
A
HOH
103
4
HOH
HOH
379
A
HOH
104
4
HOH
HOH
380
A
HOH
105
4
HOH
HOH
381
A
HOH
106
4
HOH
HOH
382
A
HOH
107
4
HOH
HOH
383
A
HOH
108
4
HOH
HOH
384
A
HOH
109
4
HOH
HOH
385
A
HOH
110
4
HOH
HOH
386
A
HOH
111
4
HOH
HOH
387
A
HOH
112
4
HOH
HOH
388
A
HOH
113
4
HOH
HOH
389
A
HOH
114
4
HOH
HOH
390
A
HOH
115
4
HOH
HOH
391
A
HOH
116
4
HOH
HOH
392
A
HOH
117
4
HOH
HOH
393
A
HOH
118
4
HOH
HOH
394
A
HOH
119
4
HOH
HOH
395
A
HOH
120
4
HOH
HOH
396
A
HOH
121
4
HOH
HOH
397
A
HOH
122
4
HOH
HOH
398
A
HOH
123
4
HOH
HOH
399
A
HOH
124
4
HOH
HOH
400
A
HOH
125
4
HOH
HOH
401
A
HOH
126
4
HOH
HOH
402
A
HOH
127
4
HOH
HOH
403
A
HOH
128
4
HOH
HOH
404
A
HOH
129
4
HOH
HOH
405
A
HOH
130
4
HOH
HOH
406
A
HOH
131
4
HOH
HOH
407
A
HOH
132
4
HOH
HOH
408
A
HOH
133
4
HOH
HOH
409
A
HOH
134
4
HOH
HOH
410
A
HOH
135
4
HOH
HOH
411
A
HOH
136
4
HOH
HOH
412
A
HOH
137
4
HOH
HOH
413
A
HOH
138
4
HOH
HOH
414
A
HOH
139
4
HOH
HOH
415
A
HOH
140
4
HOH
HOH
416
A
HOH
141
4
HOH
HOH
417
A
HOH
142
4
HOH
HOH
418
A
HOH
143
4
HOH
HOH
419
A
HOH
144
4
HOH
HOH
420
A
HOH
145
4
HOH
HOH
421
A
C
1
n
1
DC
1
B
T
2
n
2
DT
2
B
T
3
n
3
DT
3
B
T
4
n
4
DT
4
B
T
5
n
5
DT
5
B
T
6
n
6
DT
6
B
A
7
n
7
DA
7
B
A
8
n
8
DA
8
B
A
9
n
9
DA
9
B
A
10
n
10
DA
10
B
G
11
n
11
DG
11
B
A
12
n
12
DA
12
B
A
13
n
13
DA
13
B
A
14
n
14
DA
14
B
A
15
n
15
DA
15
B
G
16
n
16
DG
16
B
C
17
n
1
DC
17
D
T
18
n
2
DT
18
D
T
19
n
3
DT
19
D
T
20
n
4
DT
20
D
T
21
n
5
DT
21
D
C
22
n
6
DC
22
D
T
23
n
7
DT
23
D
T
24
n
8
DT
24
D
T
25
n
9
DT
25
D
T
26
n
10
DT
26
D
A
27
n
11
DA
27
D
A
28
n
12
DA
28
D
A
29
n
13
DA
29
D
A
30
n
14
DA
30
D
A
31
n
15
DA
31
D
G
32
n
16
DG
32
D
THR
24
n
1
THR
24
A
TRP
25
n
2
TRP
25
A
LEU
26
n
3
LEU
26
A
SER
27
n
4
SER
27
A
ASP
28
n
5
ASP
28
A
PHE
29
n
6
PHE
29
A
PRO
30
n
7
PRO
30
A
GLN
31
n
8
GLN
31
A
ALA
32
n
9
ALA
32
A
TRP
33
n
10
TRP
33
A
ALA
34
n
11
ALA
34
A
GLU
35
n
12
GLU
35
A
THR
36
n
13
THR
36
A
GLY
37
n
14
GLY
37
A
GLY
38
n
15
GLY
38
A
MET
39
n
16
MET
39
A
GLY
40
n
17
GLY
40
A
LEU
41
n
18
LEU
41
A
ALA
42
n
19
ALA
42
A
VAL
43
n
20
VAL
43
A
ARG
44
n
21
ARG
44
A
GLN
45
n
22
GLN
45
A
ALA
46
n
23
ALA
46
A
PRO
47
n
24
PRO
47
A
LEU
48
n
25
LEU
48
A
ILE
49
n
26
ILE
49
A
ILE
50
n
27
ILE
50
A
PRO
51
n
28
PRO
51
A
LEU
52
n
29
LEU
52
A
LYS
53
n
30
LYS
53
A
ALA
54
n
31
ALA
54
A
THR
55
n
32
THR
55
A
SER
56
n
33
SER
56
A
THR
57
n
34
THR
57
A
PRO
58
n
35
PRO
58
A
VAL
59
n
36
VAL
59
A
SER
60
n
37
SER
60
A
ILE
61
n
38
ILE
61
A
LYS
62
n
39
LYS
62
A
GLN
63
n
40
GLN
63
A
TYR
64
n
41
TYR
64
A
PRO
65
n
42
PRO
65
A
MET
66
n
43
MET
66
A
SER
67
n
44
SER
67
A
GLN
68
n
45
GLN
68
A
GLU
69
n
46
GLU
69
A
ALA
70
n
47
ALA
70
A
ARG
71
n
48
ARG
71
A
LEU
72
n
49
LEU
72
A
GLY
73
n
50
GLY
73
A
ILE
74
n
51
ILE
74
A
LYS
75
n
52
LYS
75
A
PRO
76
n
53
PRO
76
A
HIS
77
n
54
HIS
77
A
ILE
78
n
55
ILE
78
A
GLN
79
n
56
GLN
79
A
ARG
80
n
57
ARG
80
A
LEU
81
n
58
LEU
81
A
LEU
82
n
59
LEU
82
A
ASP
83
n
60
ASP
83
A
GLN
84
n
61
GLN
84
A
GLY
85
n
62
GLY
85
A
ILE
86
n
63
ILE
86
A
LEU
87
n
64
LEU
87
A
VAL
88
n
65
VAL
88
A
PRO
89
n
66
PRO
89
A
CYS
90
n
67
CYS
90
A
GLN
91
n
68
GLN
91
A
SER
92
n
69
SER
92
A
PRO
93
n
70
PRO
93
A
TRP
94
n
71
TRP
94
A
ASN
95
n
72
ASN
95
A
THR
96
n
73
THR
96
A
PRO
97
n
74
PRO
97
A
LEU
98
n
75
LEU
98
A
LEU
99
n
76
LEU
99
A
PRO
100
n
77
PRO
100
A
VAL
101
n
78
VAL
101
A
LYS
102
n
79
LYS
102
A
LYS
103
n
80
LYS
103
A
PRO
104
n
81
PRO
104
A
GLY
105
n
82
GLY
105
A
THR
106
n
83
THR
106
A
ASN
107
n
84
ASN
107
A
ASP
108
n
85
ASP
108
A
TYR
109
n
86
TYR
109
A
ARG
110
n
87
ARG
110
A
PRO
111
n
88
PRO
111
A
VAL
112
n
89
VAL
112
A
GLN
113
n
90
GLN
113
A
ASP
114
n
91
ASP
114
A
LEU
115
n
92
LEU
115
A
ARG
116
n
93
ARG
116
A
GLU
117
n
94
GLU
117
A
VAL
118
n
95
VAL
118
A
ASN
119
n
96
ASN
119
A
LYS
120
n
97
LYS
120
A
ARG
121
n
98
ARG
121
A
VAL
122
n
99
VAL
122
A
GLU
123
n
100
GLU
123
A
ASP
124
n
101
ASP
124
A
ILE
125
n
102
ILE
125
A
HIS
126
n
103
HIS
126
A
PRO
127
n
104
PRO
127
A
THR
128
n
105
THR
128
A
VAL
129
n
106
VAL
129
A
PRO
130
n
107
PRO
130
A
ASN
131
n
108
ASN
131
A
PRO
132
n
109
PRO
132
A
TYR
133
n
110
TYR
133
A
ASN
134
n
111
ASN
134
A
LEU
135
n
112
LEU
135
A
LEU
136
n
113
LEU
136
A
SER
137
n
114
SER
137
A
GLY
138
n
115
GLY
138
A
LEU
139
n
116
LEU
139
A
PRO
140
n
117
PRO
140
A
PRO
141
n
118
PRO
141
A
SER
142
n
119
SER
142
A
HIS
143
n
120
HIS
143
A
GLN
144
n
121
GLN
144
A
TRP
145
n
122
TRP
145
A
TYR
146
n
123
TYR
146
A
THR
147
n
124
THR
147
A
VAL
148
n
125
VAL
148
A
LEU
149
n
126
LEU
149
A
ASP
150
n
127
ASP
150
A
LEU
151
n
128
LEU
151
A
LYS
152
n
129
LYS
152
A
ASP
153
n
130
ASP
153
A
ALA
154
n
131
ALA
154
A
PHE
155
n
132
PHE
155
A
PHE
156
n
133
PHE
156
A
CYS
157
n
134
CYS
157
A
LEU
158
n
135
LEU
158
A
ARG
159
n
136
ARG
159
A
LEU
160
n
137
LEU
160
A
HIS
161
n
138
HIS
161
A
PRO
162
n
139
PRO
162
A
THR
163
n
140
THR
163
A
SER
164
n
141
SER
164
A
GLN
165
n
142
GLN
165
A
PRO
166
n
143
PRO
166
A
LEU
167
n
144
LEU
167
A
PHE
168
n
145
PHE
168
A
ALA
169
n
146
ALA
169
A
PHE
170
n
147
PHE
170
A
GLU
171
n
148
GLU
171
A
TRP
172
n
149
TRP
172
A
ARG
173
n
150
ARG
173
A
ASP
174
n
151
ASP
174
A
PRO
175
n
152
PRO
175
A
GLU
176
n
153
GLU
176
A
MET
177
n
154
MET
177
A
GLY
178
n
155
GLY
178
A
ILE
179
n
156
ILE
179
A
SER
180
n
157
SER
180
A
GLY
181
n
158
GLY
181
A
GLN
182
n
159
GLN
182
A
LEU
183
n
160
LEU
183
A
THR
184
n
161
THR
184
A
TRP
185
n
162
TRP
185
A
THR
186
n
163
THR
186
A
ARG
187
n
164
ARG
187
A
LEU
188
n
165
LEU
188
A
PRO
189
n
166
PRO
189
A
GLN
190
n
167
GLN
190
A
GLY
191
n
168
GLY
191
A
PHE
192
n
169
PHE
192
A
LYS
193
n
170
LYS
193
A
ASN
194
n
171
ASN
194
A
SER
195
n
172
SER
195
A
PRO
196
n
173
PRO
196
A
THR
197
n
174
THR
197
A
LEU
198
n
175
LEU
198
A
PHE
199
n
176
PHE
199
A
ASP
200
n
177
ASP
200
A
GLU
201
n
178
GLU
201
A
ALA
202
n
179
ALA
202
A
LEU
203
n
180
LEU
203
A
HIS
204
n
181
HIS
204
A
ARG
205
n
182
ARG
205
A
ASP
206
n
183
ASP
206
A
LEU
207
n
184
LEU
207
A
ALA
208
n
185
ALA
208
A
ASP
209
n
186
ASP
209
A
PHE
210
n
187
PHE
210
A
ARG
211
n
188
ARG
211
A
ILE
212
n
189
ILE
212
A
GLN
213
n
190
GLN
213
A
HIS
214
n
191
HIS
214
A
PRO
215
n
192
PRO
215
A
ASP
216
n
193
ASP
216
A
LEU
217
n
194
LEU
217
A
ILE
218
n
195
ILE
218
A
LEU
219
n
196
LEU
219
A
LEU
220
n
197
LEU
220
A
GLN
221
n
198
GLN
221
A
TYR
222
n
199
TYR
222
A
VAL
223
n
200
VAL
223
A
ASP
224
n
201
ASP
224
A
ASP
225
n
202
ASP
225
A
LEU
226
n
203
LEU
226
A
LEU
227
n
204
LEU
227
A
LEU
228
n
205
LEU
228
A
ALA
229
n
206
ALA
229
A
ALA
230
n
207
ALA
230
A
THR
231
n
208
THR
231
A
SER
232
n
209
SER
232
A
GLU
233
n
210
GLU
233
A
LEU
234
n
211
LEU
234
A
ASP
235
n
212
ASP
235
A
CYS
236
n
213
CYS
236
A
GLN
237
n
214
GLN
237
A
GLN
238
n
215
GLN
238
A
GLY
239
n
216
GLY
239
A
THR
240
n
217
THR
240
A
ARG
241
n
218
ARG
241
A
ALA
242
n
219
ALA
242
A
LEU
243
n
220
LEU
243
A
LEU
244
n
221
LEU
244
A
GLN
245
n
222
GLN
245
A
THR
246
n
223
THR
246
A
LEU
247
n
224
LEU
247
A
GLY
248
n
225
GLY
248
A
ASN
249
n
226
ASN
249
A
LEU
250
n
227
LEU
250
A
GLY
251
n
228
GLY
251
A
TYR
252
n
229
TYR
252
A
ARG
253
n
230
ARG
253
A
ALA
254
n
231
ALA
254
A
SER
255
n
232
SER
255
A
ALA
256
n
233
ALA
256
A
LYS
257
n
234
LYS
257
A
LYS
258
n
235
LYS
258
A
ALA
259
n
236
ALA
259
A
GLN
260
n
237
GLN
260
A
ILE
261
n
238
ILE
261
A
CYS
262
n
239
CYS
262
A
GLN
263
n
240
GLN
263
A
LYS
264
n
241
LYS
264
A
GLN
265
n
242
GLN
265
A
VAL
266
n
243
VAL
266
A
LYS
267
n
244
LYS
267
A
TYR
268
n
245
TYR
268
A
LEU
269
n
246
LEU
269
A
GLY
270
n
247
GLY
270
A
TYR
271
n
248
TYR
271
A
LEU
272
n
249
LEU
272
A
LEU
273
n
250
LEU
273
A
LYS
274
n
251
LYS
274
A
GLU
275
n
252
GLU
275
A
GLY
276
n
253
GLY
276
A
GLN
277
n
254
GLN
277
A
ARG
278
n
255
ARG
278
A
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_765
-x+2,-y+1,z
crystal symmetry operation
108.8200000000
146.2220000000
0.0000000000
A
N
VAL
88
C
N
VAL
65
A
O
THR
184
C
O
THR
161
A
O
LEU
183
C
O
LEU
160
A
N
PHE
170
C
N
PHE
147
A
N
LEU
99
C
N
LEU
76
A
O
VAL
112
C
O
VAL
89
A
N
TYR
222
C
N
TYR
199
A
O
ASP
225
C
O
ASP
202
A
O
ALA
230
C
O
ALA
207
A
N
TRP
145
C
N
TRP
122
A
N
TYR
146
C
N
TYR
123
A
O
GLN
263
C
O
GLN
240
A
N
VAL
266
C
N
VAL
243
A
O
LEU
273
C
O
LEU
250
1
A
O
ARG
278
C
O
ARG
255
1
Y
1
A
A
O
O
HOH
HOH
327
403
2.10
1
A
A
O
O
HOH
HOH
300
396
2.14
1
A
A
CD
O
ARG
HOH
278
377
2.18
1
A
A
NH1
O
ARG
HOH
80
330
2.19
1
D
D
O3'
P
DT
DT
24
25
1.34
D
D
1
5.63
0.70
118.00
123.63
B
B
B
N3
C4
N4
DC
DC
DC
1
1
1
B
B
B
N
1
-6.01
0.70
120.20
114.19
B
B
B
C5
C4
N4
DC
DC
DC
1
1
1
B
B
B
N
1
-3.99
0.60
122.30
118.31
B
B
B
N3
C2
O2
DT
DT
DT
2
2
2
B
B
B
N
1
4.47
0.60
119.90
124.37
B
B
B
N3
C4
O4
DT
DT
DT
2
2
2
B
B
B
N
1
-3.99
0.60
122.30
118.31
B
B
B
N3
C2
O2
DT
DT
DT
3
3
3
B
B
B
N
1
-5.41
0.80
109.40
103.99
B
B
B
O5'
C5'
C4'
DT
DT
DT
5
5
5
B
B
B
N
1
7.48
0.60
119.90
127.38
B
B
B
N3
C4
O4
DT
DT
DT
5
5
5
B
B
B
N
1
-6.66
0.70
124.90
118.24
B
B
B
C5
C4
O4
DT
DT
DT
5
5
5
B
B
B
N
1
-5.45
0.60
122.90
117.45
B
B
B
C6
C5
C7
DT
DT
DT
5
5
5
B
B
B
N
1
59.73
1.90
104.00
163.73
B
B
B
O3'
P
O5'
DA
DA
DA
8
9
9
B
B
B
Y
1
-39.62
2.20
105.20
65.58
B
B
B
O3'
P
OP2
DA
DA
DA
8
9
9
B
B
B
Y
1
-18.74
2.20
105.20
86.46
B
B
B
O3'
P
OP1
DA
DA
DA
8
9
9
B
B
B
Y
1
-6.52
0.80
102.40
95.88
B
B
B
C3'
C2'
C1'
DA
DA
DA
9
9
9
B
B
B
N
1
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
B
B
B
N
1
11.00
1.20
119.70
130.70
B
B
B
C3'
O3'
P
DG
DG
DA
11
11
12
B
B
B
Y
1
-25.98
2.20
105.20
79.22
B
B
B
O3'
P
OP2
DG
DA
DA
11
12
12
B
B
B
Y
1
18.65
1.10
110.50
129.15
B
B
B
O3'
P
OP1
DG
DA
DA
11
12
12
B
B
B
Y
1
3.42
0.30
108.30
111.72
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
B
B
B
N
1
-5.19
0.60
118.60
113.41
B
B
B
N1
C6
N6
DA
DA
DA
12
12
12
B
B
B
N
1
4.88
0.80
123.70
128.58
B
B
B
C5
C6
N6
DA
DA
DA
12
12
12
B
B
B
N
1
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
B
B
B
N
1
-4.36
0.60
118.60
114.24
B
B
B
N1
C6
N6
DA
DA
DA
14
14
14
B
B
B
N
1
-8.56
1.20
119.70
111.14
B
B
B
C3'
O3'
P
DA
DA
DA
14
14
15
B
B
B
Y
1
4.27
0.60
118.60
122.87
B
B
B
N1
C6
N6
DA
DA
DA
15
15
15
B
B
B
N
1
-6.80
0.60
119.90
113.10
B
B
B
N1
C6
O6
DG
DG
DG
16
16
16
B
B
B
N
1
4.49
0.60
128.60
133.09
B
B
B
C5
C6
O6
DG
DG
DG
16
16
16
B
B
B
N
1
5.63
0.70
118.00
123.63
D
D
D
N3
C4
N4
DC
DC
DC
17
17
17
D
D
D
N
1
-6.01
0.70
120.20
114.19
D
D
D
C5
C4
N4
DC
DC
DC
17
17
17
D
D
D
N
1
-3.99
0.60
122.30
118.31
D
D
D
N3
C2
O2
DT
DT
DT
18
18
18
D
D
D
N
1
4.47
0.60
119.90
124.37
D
D
D
N3
C4
O4
DT
DT
DT
18
18
18
D
D
D
N
1
-3.99
0.60
122.30
118.31
D
D
D
N3
C2
O2
DT
DT
DT
19
19
19
D
D
D
N
1
-5.41
0.80
109.40
103.99
D
D
D
O5'
C5'
C4'
DT
DT
DT
21
21
21
D
D
D
N
1
7.48
0.60
119.90
127.38
D
D
D
N3
C4
O4
DT
DT
DT
21
21
21
D
D
D
N
1
-6.66
0.70
124.90
118.24
D
D
D
C5
C4
O4
DT
DT
DT
21
21
21
D
D
D
N
1
-5.45
0.60
122.90
117.45
D
D
D
C6
C5
C7
DT
DT
DT
21
21
21
D
D
D
N
1
12.84
1.20
119.70
132.54
D
D
D
C3'
O3'
P
DT
DT
DC
21
21
22
D
D
D
Y
1
-21.32
2.20
105.20
83.88
D
D
D
O3'
P
OP2
DT
DC
DC
21
22
22
D
D
D
Y
1
7.41
1.10
110.50
117.91
D
D
D
O3'
P
OP1
DT
DC
DC
21
22
22
D
D
D
Y
1
36.61
1.20
119.70
156.31
D
D
D
C3'
O3'
P
DT
DT
DT
24
24
25
D
D
D
Y
1
14.14
1.90
104.00
118.14
D
D
D
O3'
P
O5'
DT
DT
DT
24
25
25
D
D
D
Y
1
13.90
1.10
110.50
124.40
D
D
D
O3'
P
OP2
DT
DT
DT
24
25
25
D
D
D
Y
1
-37.01
2.20
105.20
68.19
D
D
D
O3'
P
OP1
DT
DT
DT
24
25
25
D
D
D
Y
1
2.50
0.30
108.30
110.80
D
D
D
O4'
C1'
N1
DT
DT
DT
25
25
25
D
D
D
N
1
10.25
1.20
119.70
129.95
D
D
D
C3'
O3'
P
DT
DT
DT
25
25
26
D
D
D
Y
1
3.42
0.30
108.30
111.72
D
D
D
O4'
C1'
N9
DA
DA
DA
28
28
28
D
D
D
N
1
-5.19
0.60
118.60
113.41
D
D
D
N1
C6
N6
DA
DA
DA
28
28
28
D
D
D
N
1
4.88
0.80
123.70
128.58
D
D
D
C5
C6
N6
DA
DA
DA
28
28
28
D
D
D
N
1
1.96
0.30
108.30
110.26
D
D
D
O4'
C1'
N9
DA
DA
DA
30
30
30
D
D
D
N
1
-4.36
0.60
118.60
114.24
D
D
D
N1
C6
N6
DA
DA
DA
30
30
30
D
D
D
N
1
-8.56
1.20
119.70
111.14
D
D
D
C3'
O3'
P
DA
DA
DA
30
30
31
D
D
D
Y
1
4.27
0.60
118.60
122.87
D
D
D
N1
C6
N6
DA
DA
DA
31
31
31
D
D
D
N
1
-6.80
0.60
119.90
113.10
D
D
D
N1
C6
O6
DG
DG
DG
32
32
32
D
D
D
N
1
4.49
0.60
128.60
133.09
D
D
D
C5
C6
O6
DG
DG
DG
32
32
32
D
D
D
N
1
-3.08
0.50
120.30
117.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
44
44
44
N
1
4.24
0.50
120.30
124.54
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
44
44
44
N
1
3.61
0.50
120.30
123.91
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
80
80
80
N
1
5.48
0.90
118.30
123.78
A
A
A
CB
CG
OD1
ASP
ASP
ASP
83
83
83
N
1
6.56
0.90
118.30
124.86
A
A
A
CB
CG
OD1
ASP
ASP
ASP
150
150
150
N
1
-3.29
0.50
120.30
117.01
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
159
159
159
N
1
-16.31
2.70
111.00
94.69
A
A
A
N
CA
C
ASP
ASP
ASP
174
174
174
N
1
4.98
0.50
120.30
125.28
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
187
187
187
N
1
-4.00
0.50
120.30
116.30
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
1
-4.15
0.50
120.30
116.15
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
211
211
211
N
1
3.78
0.50
120.30
124.08
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
241
241
241
N
1
10.99
1.40
123.60
134.59
A
A
A
CD
NE
CZ
ARG
ARG
ARG
278
278
278
N
1
4.67
0.50
120.30
124.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
278
278
278
N
1
D
D
O3'
P
DT
DT
24
25
-0.268
0.012
1.607
1.339
D
D
Y
1
A
A
OH
OH
TYR
TYR
271
271
2.07
1_555
2_665
1
A
LEU
41
-166.22
108.76
1
A
LYS
103
-65.15
-94.37
1
A
PRO
104
-63.78
-79.09
1
A
ASP
108
42.93
82.52
1
A
PRO
175
-3.99
-68.60
1
A
VAL
223
54.49
-106.36
42.8
0.269
0.24
0.241
0.241
2.00
50.0
1249
24798
23122
5.4
93.2
RANDOM
1,2
Isotropic
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1D1U
Engh & Huber
0.29
0.20
2.00
50.0
145
2834
0
650
2039
0.006
1.3
23.0
0.245
0.215
2.10
1249
76.1
2.00
50.
1N4L
24798
23122
-3
1,2
93.2
2.00
2.10
5.8
2691
0.15
1,2
3.1
76.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
REFMAC
A DNA analogue of the polypurine tract of HIV-1
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
24
C
THR
1
HELX_P
A
PHE
29
C
PHE
6
1
1
6
A
TRP
33
C
TRP
10
HELX_P
A
GLY
38
C
GLY
15
1
2
6
A
SER
67
C
SER
44
HELX_P
A
GLN
84
C
GLN
61
1
3
18
A
LEU
115
C
LEU
92
HELX_P
A
LYS
120
C
LYS
97
1
4
6
A
ASN
131
C
ASN
108
HELX_P
A
GLY
138
C
GLY
115
1
5
8
A
ALA
154
C
ALA
131
HELX_P
A
LEU
158
C
LEU
135
5
6
5
A
SER
164
C
SER
141
HELX_P
A
ALA
169
C
ALA
146
5
7
6
A
ASN
194
C
ASN
171
HELX_P
A
LEU
207
C
LEU
184
1
8
14
A
LEU
207
C
LEU
184
HELX_P
A
HIS
214
C
HIS
191
1
9
8
A
SER
232
C
SER
209
HELX_P
A
GLY
251
C
GLY
228
1
10
20
hydrog
WATSON-CRICK
B
B
B
DC
1
A
N3
DC
1
1_555
B
DG
16
A
N1
DG
16
2_765
hydrog
WATSON-CRICK
B
B
B
DC
1
A
N4
DC
1
1_555
B
DG
16
A
O6
DG
16
2_765
hydrog
WATSON-CRICK
B
B
B
DC
1
A
O2
DC
1
1_555
B
DG
16
A
N2
DG
16
2_765
hydrog
WATSON-CRICK
B
B
B
DT
2
A
N3
DT
2
1_555
B
DA
15
A
N1
DA
15
2_765
hydrog
WATSON-CRICK
B
B
B
DT
2
A
O4
DT
2
1_555
B
DA
15
A
N6
DA
15
2_765
hydrog
DT-DA PAIR
B
B
B
DT
3
A
N3
DT
3
1_555
B
DA
14
A
N1
DA
14
2_765
hydrog
WATSON-CRICK
B
B
B
DT
4
A
N3
DT
4
1_555
B
DA
13
A
N1
DA
13
2_765
hydrog
WATSON-CRICK
B
B
B
DT
4
A
O4
DT
4
1_555
B
DA
13
A
N6
DA
13
2_765
hydrog
WATSON-CRICK
B
B
B
DT
5
A
N3
DT
5
1_555
B
DA
12
A
N1
DA
12
2_765
hydrog
WATSON-CRICK
B
B
B
DT
5
A
O4
DT
5
1_555
B
DA
12
A
N6
DA
12
2_765
hydrog
TYPE_27_PAIR
B
B
B
DT
6
A
N3
DT
6
1_555
B
DG
11
A
O6
DG
11
2_765
hydrog
TYPE_27_PAIR
B
B
B
DT
6
A
O4
DT
6
1_555
B
DG
11
A
N1
DG
11
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
7
A
N1
DA
7
1_555
B
DA
10
A
N6
DA
10
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
7
A
N6
DA
7
1_555
B
DA
10
A
N1
DA
10
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
8
A
N1
DA
8
1_555
B
DA
9
A
N6
DA
9
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
8
A
N6
DA
8
1_555
B
DA
9
A
N1
DA
9
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
9
A
N1
DA
9
1_555
B
DA
8
A
N6
DA
8
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
9
A
N6
DA
9
1_555
B
DA
8
A
N1
DA
8
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
10
A
N1
DA
10
1_555
B
DA
7
A
N6
DA
7
2_765
hydrog
TYPE_1_PAIR
B
B
B
DA
10
A
N6
DA
10
1_555
B
DA
7
A
N1
DA
7
2_765
hydrog
TYPE_27_PAIR
B
B
B
DG
11
A
N1
DG
11
1_555
B
DT
6
A
O4
DT
6
2_765
hydrog
TYPE_27_PAIR
B
B
B
DG
11
A
O6
DG
11
1_555
B
DT
6
A
N3
DT
6
2_765
hydrog
WATSON-CRICK
B
B
B
DA
12
A
N1
DA
12
1_555
B
DT
5
A
N3
DT
5
2_765
hydrog
WATSON-CRICK
B
B
B
DA
12
A
N6
DA
12
1_555
B
DT
5
A
O4
DT
5
2_765
hydrog
WATSON-CRICK
B
B
B
DA
13
A
N1
DA
13
1_555
B
DT
4
A
N3
DT
4
2_765
hydrog
WATSON-CRICK
B
B
B
DA
13
A
N6
DA
13
1_555
B
DT
4
A
O4
DT
4
2_765
hydrog
DA-DT PAIR
B
B
B
DA
14
A
N1
DA
14
1_555
B
DT
3
A
N3
DT
3
2_765
hydrog
WATSON-CRICK
B
B
B
DA
15
A
N1
DA
15
1_555
B
DT
2
A
N3
DT
2
2_765
hydrog
WATSON-CRICK
B
B
B
DA
15
A
N6
DA
15
1_555
B
DT
2
A
O4
DT
2
2_765
hydrog
WATSON-CRICK
B
B
B
DG
16
A
N1
DG
16
1_555
B
DC
1
A
N3
DC
1
2_765
hydrog
WATSON-CRICK
B
B
B
DG
16
A
N2
DG
16
1_555
B
DC
1
A
O2
DC
1
2_765
hydrog
WATSON-CRICK
B
B
B
DG
16
A
O6
DG
16
1_555
B
DC
1
A
N4
DC
1
2_765
hydrog
WATSON-CRICK
D
D
D
DC
17
B
N3
DC
1
1_555
D
DG
32
B
N1
DG
16
2_765
hydrog
WATSON-CRICK
D
D
D
DC
17
B
N4
DC
1
1_555
D
DG
32
B
O6
DG
16
2_765
hydrog
WATSON-CRICK
D
D
D
DC
17
B
O2
DC
1
1_555
D
DG
32
B
N2
DG
16
2_765
hydrog
WATSON-CRICK
D
D
D
DT
18
B
N3
DT
2
1_555
D
DA
31
B
N1
DA
15
2_765
hydrog
WATSON-CRICK
D
D
D
DT
18
B
O4
DT
2
1_555
D
DA
31
B
N6
DA
15
2_765
hydrog
DT-DA PAIR
D
D
D
DT
19
B
N3
DT
3
1_555
D
DA
30
B
N1
DA
14
2_765
hydrog
WATSON-CRICK
D
D
D
DT
20
B
N3
DT
4
1_555
D
DA
29
B
N1
DA
13
2_765
hydrog
WATSON-CRICK
D
D
D
DT
20
B
O4
DT
4
1_555
D
DA
29
B
N6
DA
13
2_765
hydrog
WATSON-CRICK
D
D
D
DT
21
B
N3
DT
5
1_555
D
DA
28
B
N1
DA
12
2_765
hydrog
WATSON-CRICK
D
D
D
DT
21
B
O4
DT
5
1_555
D
DA
28
B
N6
DA
12
2_765
hydrog
DC-DA MISPAIR
D
D
D
DC
22
B
N3
DC
6
1_555
D
DA
27
B
N6
DA
11
2_765
hydrog
DA-DC MISPAIR
D
D
D
DA
27
B
N6
DA
11
1_555
D
DC
22
B
N3
DC
6
2_765
hydrog
WATSON-CRICK
D
D
D
DA
28
B
N1
DA
12
1_555
D
DT
21
B
N3
DT
5
2_765
hydrog
WATSON-CRICK
D
D
D
DA
28
B
N6
DA
12
1_555
D
DT
21
B
O4
DT
5
2_765
hydrog
WATSON-CRICK
D
D
D
DA
29
B
N1
DA
13
1_555
D
DT
20
B
N3
DT
4
2_765
hydrog
WATSON-CRICK
D
D
D
DA
29
B
N6
DA
13
1_555
D
DT
20
B
O4
DT
4
2_765
hydrog
DA-DT PAIR
D
D
D
DA
30
B
N1
DA
14
1_555
D
DT
19
B
N3
DT
3
2_765
hydrog
WATSON-CRICK
D
D
D
DA
31
B
N1
DA
15
1_555
D
DT
18
B
N3
DT
2
2_765
hydrog
WATSON-CRICK
D
D
D
DA
31
B
N6
DA
15
1_555
D
DT
18
B
O4
DT
2
2_765
hydrog
WATSON-CRICK
D
D
D
DG
32
B
N1
DG
16
1_555
D
DC
17
B
N3
DC
1
2_765
hydrog
WATSON-CRICK
D
D
D
DG
32
B
N2
DG
16
1_555
D
DC
17
B
O2
DC
1
2_765
hydrog
WATSON-CRICK
D
D
D
DG
32
B
O6
DG
16
1_555
D
DC
17
B
N4
DC
1
2_765
TRANSFERASE/DNA
MMLV RT; Polypurine Tract; HIV-1; Asymmetric DNA; protein-DNA complex, TRANSFERASE-DNA COMPLEX
POL_MLVMO
UNP
3
144
P03355
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
1N4L
PDB
1
1N4L
1N4L
PDB
2
1N4L
144
398
1N4L
24
278
P03355
A
1
1
255
1
16
1N4L
1
16
1N4L
B
2
1
16
17
32
1N4L
17
32
1N4L
D
3
1
16
3
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
87
C
LEU
64
A
CYS
90
C
CYS
67
A
GLN
182
C
GLN
159
A
TRP
185
C
TRP
162
A
PHE
170
C
PHE
147
A
GLU
171
C
GLU
148
A
LEU
98
C
LEU
75
A
PRO
100
C
PRO
77
A
PRO
111
C
PRO
88
A
GLN
113
C
GLN
90
A
ILE
218
C
ILE
195
A
TYR
222
C
TYR
199
A
ASP
225
C
ASP
202
A
ALA
230
C
ALA
207
A
TRP
145
C
TRP
122
A
ASP
150
C
ASP
127
A
GLN
260
C
GLN
237
A
GLN
263
C
GLN
240
A
VAL
266
C
VAL
243
A
TYR
268
C
TYR
245
A
TYR
271
C
TYR
248
A
LEU
273
C
LEU
250
18
orthorhombic
P 21 21 2