1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Janssen, B.J.C. Schirra, H.J. Lay, F.T. Anderson, M.A. Craik, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 8214 8222 10.1021/bi034379o 12846570 Structure of Petunia hybrida defensin 1, a novel plant defensin with five disulfide bonds 2003 10.2210/pdb1n4n/pdb pdb_00001n4n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5222.335 floral defensin-like protein 1 residues 1-47 1 nat polymer PhD1 no no ATCKAECPTWDSVCINKKPCVACCKKAKFSDGHCSKILRRCLCTKEC ATCKAECPTWDSVCINKKPCVACCKKAKFSDGHCSKILRRCLCTKEC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Petunia sample 4102 Petunia x hybrida database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-11-01 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y PDBJ 2002-11-01 REL REL This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 50 20 2D NOESY DQF-COSY 2D NOESY E-COSY 2D NOESY DQF-COSY 0.94mM 3.1 ambient 310 K 0.94mM 3.1 ambient 280 K The structures are based on 407 NOE-derived inter-residual distance constraints, 26 phi- and 28 chi1- angle constraints, and 30 distance constraints for 15 hydrogen bonds. Torsion angle simulated annealing protocol, incorporated in CNS. Refinement in a box with explicit water molecules using the method of Linge & Nilges (1999) 19 lowest energy 0.94mM 1H-PhD1 90% H2O/10% D2O 0.94mM 1H-PhD1 99% D2O, 1% H2O Bruker collection XwinNMR 2.6 Bruker processing XwinNMR 2.6 Cieslar & Kalus data analysis CCNMR glxccExplorer Brunger structure solution X-PLOR 3.851 Brunger structure solution CNS 1.1 Brunger refinement CNS 1.1 750 Bruker DMX ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A CYS 3 n 3 CYS 3 A LYS 4 n 4 LYS 4 A ALA 5 n 5 ALA 5 A GLU 6 n 6 GLU 6 A CYS 7 n 7 CYS 7 A PRO 8 n 8 PRO 8 A THR 9 n 9 THR 9 A TRP 10 n 10 TRP 10 A ASP 11 n 11 ASP 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A CYS 14 n 14 CYS 14 A ILE 15 n 15 ILE 15 A ASN 16 n 16 ASN 16 A LYS 17 n 17 LYS 17 A LYS 18 n 18 LYS 18 A PRO 19 n 19 PRO 19 A CYS 20 n 20 CYS 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A CYS 23 n 23 CYS 23 A CYS 24 n 24 CYS 24 A LYS 25 n 25 LYS 25 A LYS 26 n 26 LYS 26 A ALA 27 n 27 ALA 27 A LYS 28 n 28 LYS 28 A PHE 29 n 29 PHE 29 A SER 30 n 30 SER 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A HIS 33 n 33 HIS 33 A CYS 34 n 34 CYS 34 A SER 35 n 35 SER 35 A LYS 36 n 36 LYS 36 A ILE 37 n 37 ILE 37 A LEU 38 n 38 LEU 38 A ARG 39 n 39 ARG 39 A ARG 40 n 40 ARG 40 A CYS 41 n 41 CYS 41 A LEU 42 n 42 LEU 42 A CYS 43 n 43 CYS 43 A THR 44 n 44 THR 44 A LYS 45 n 45 LYS 45 A GLU 46 n 46 GLU 46 A CYS 47 n 47 CYS 47 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 3 A N CYS 3 A O LYS 45 A O LYS 45 A O LEU 42 A O LEU 42 A N HIS 33 A N HIS 33 1 A A HZ1 OE1 LYS GLU 4 6 1.59 2 A A H3 OXT ALA CYS 1 47 1.51 2 A A HZ1 OD1 LYS ASP 25 31 1.53 2 A A HZ2 OE2 LYS GLU 45 46 1.58 3 A A H3 OXT ALA CYS 1 47 1.52 4 A A H3 OXT ALA CYS 1 47 1.50 5 A A HZ3 OE2 LYS GLU 4 6 1.51 5 A A HZ3 OD1 LYS ASP 17 31 1.57 7 A A HZ1 OE2 LYS GLU 4 6 1.52 7 A A HZ1 OE1 LYS GLU 45 46 1.53 9 A A HA HH12 ASP ARG 11 40 1.00 9 A A HB3 HD13 SER LEU 35 42 1.34 9 A A HZ3 OE2 LYS GLU 45 46 1.50 9 A A HZ2 OD2 LYS ASP 17 31 1.58 10 A A HB3 HD11 SER LEU 35 42 1.31 10 A A HZ3 OE2 LYS GLU 4 6 1.52 11 A A H3 OXT ALA CYS 1 47 1.50 13 A A HA HE3 CYS LYS 23 26 1.29 13 A A H1 OXT ALA CYS 1 47 1.49 15 A A H3 O ALA CYS 1 47 1.49 16 A A H HB2 CYS ARG 14 39 1.30 17 A A HB3 HD12 SER LEU 35 42 1.29 17 A A HZ1 OE2 LYS GLU 4 6 1.59 18 A A H2 O ALA CYS 1 47 1.50 18 A A HZ3 OE2 LYS GLU 45 46 1.54 19 A A HZ2 OE2 LYS GLU 4 6 1.52 20 A A HA HZ3 CYS LYS 23 26 1.28 20 A A HZ1 OE2 LYS GLU 4 6 1.57 1 A THR 9 -89.52 44.50 1 A ASP 11 -150.36 51.44 1 A LYS 28 72.52 49.46 1 A ILE 37 -69.45 -100.64 2 A ASP 11 -150.75 62.97 2 A ILE 15 -130.76 -61.09 2 A ILE 37 -64.69 -82.59 3 A THR 9 -98.31 47.26 3 A ASP 11 -147.63 -20.78 3 A LYS 45 -161.52 -156.23 4 A THR 9 -97.36 44.10 4 A ASP 11 -151.11 67.76 4 A LYS 28 64.29 61.96 4 A ILE 37 -67.62 -72.19 4 A ARG 40 -83.79 -145.54 5 A THR 9 -91.97 48.56 5 A SER 12 -100.60 -169.21 5 A ILE 37 -67.72 -105.88 6 A THR 9 -92.09 49.74 6 A ASP 11 -150.11 -29.84 6 A LYS 28 66.55 70.84 6 A SER 35 -74.18 -159.54 7 A THR 9 -90.63 46.02 7 A ASP 11 -150.34 53.07 7 A LYS 28 72.39 45.71 7 A SER 35 -77.97 -165.12 7 A ILE 37 -77.99 -100.74 8 A THR 9 -90.99 43.71 8 A ASP 11 -151.20 59.85 8 A LYS 28 71.07 43.67 8 A SER 35 -99.19 -157.27 8 A LYS 36 -150.32 -39.47 8 A ILE 37 -55.34 -76.93 8 A ARG 40 -87.46 -91.22 8 A CYS 41 -176.23 106.76 9 A THR 9 -90.86 43.56 9 A TRP 10 -150.32 85.91 9 A LYS 28 71.55 35.98 9 A SER 35 -87.80 -156.08 9 A LYS 36 -133.58 -34.28 9 A ILE 37 -61.28 -98.96 10 A THR 9 -86.80 44.48 10 A ASP 11 -151.22 66.66 10 A SER 35 -92.84 -159.00 10 A ILE 37 -67.43 -102.30 11 A THR 9 -92.83 50.64 11 A ASP 11 -150.54 -29.51 11 A LYS 28 65.22 68.17 11 A ILE 37 -69.96 -101.76 12 A THR 9 -97.78 45.36 12 A ASP 11 -148.01 58.97 12 A LYS 28 71.40 56.83 12 A ILE 37 -67.16 -75.71 13 A THR 9 -88.58 45.43 13 A ASP 11 -150.50 68.57 13 A SER 35 -81.45 -155.06 13 A ILE 37 -60.54 -89.63 14 A THR 9 -92.71 47.30 14 A ASP 11 -150.71 62.50 14 A ILE 37 -71.03 -106.17 15 A ASP 11 -143.58 29.27 15 A LYS 28 70.51 57.40 15 A SER 35 -77.90 -162.59 15 A ILE 37 -61.11 -88.64 16 A THR 2 -152.73 88.23 16 A THR 9 -90.44 41.02 16 A ASP 11 -151.03 55.59 16 A ILE 37 -71.65 -95.51 16 A LYS 45 -160.40 -168.68 17 A ASP 11 -150.35 18.97 17 A SER 35 -87.31 -156.69 17 A LEU 38 -140.76 23.03 18 A THR 9 -93.66 50.52 18 A ASP 11 -150.96 -28.18 18 A LYS 28 72.72 36.08 18 A ILE 37 -69.98 -104.50 19 A THR 9 -91.14 46.32 19 A ASP 11 -150.63 57.27 19 A LYS 28 78.93 36.02 19 A ILE 37 -68.85 -102.16 20 A THR 9 -87.19 46.27 20 A ASP 11 -150.31 60.06 20 A SER 35 -79.39 -157.03 Structure of the Plant Defensin PhD1 from Petunia Hybrida 1 N N A ASN 16 A ASN 16 HELX_P A ALA 27 A ALA 27 1 1 12 disulf 2.029 A CYS 3 A SG CYS 3 1_555 A CYS 47 A SG CYS 47 1_555 disulf 2.023 A CYS 7 A SG CYS 7 1_555 A CYS 23 A SG CYS 23 1_555 disulf 2.027 A CYS 14 A SG CYS 14 1_555 A CYS 34 A SG CYS 34 1_555 disulf 2.023 A CYS 20 A SG CYS 20 1_555 A CYS 41 A SG CYS 41 1_555 disulf 2.029 A CYS 24 A SG CYS 24 1_555 A CYS 43 A SG CYS 43 1_555 PLANT PROTEIN Cysteine-stabilised alpha-beta motif, fifth disulfide bond, Plant protein DEF1_PETHY UNP 1 26 Q8H6Q1 ATCKAECPTWDSVCINKKPCVACCKKAKFSDGHCSKILRRCLCTKEC 26 72 1N4N 1 47 Q8H6Q1 A 1 1 47 3 anti-parallel anti-parallel A CYS 3 A CYS 3 A GLU 6 A GLU 6 A CYS 41 A CYS 41 A LYS 45 A LYS 45 A ASP 31 A ASP 31 A CYS 34 A CYS 34