0.013115
0.007572
0.000000
0.000000
0.015144
0.000000
0.000000
0.000000
0.007401
0.00000
0.00000
0.00000
Fioravanti, E.
Haouz, A.
Ursby, T.
Munier-Lehmann, H.
Delarue, M.
Bourgeois, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
76.248
76.248
135.114
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C10 H17 N2 O14 P3
482.168
THYMIDINE-5'-TRIPHOSPHATE
non-polymer
C10 H16 N2 O11 P2
402.188
THYMIDINE-5'-DIPHOSPHATE
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
S
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
N
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
S
P
N
355
N
O
N
356
N
O
N
357
N
O
N
358
S
P
N
359
N
O
N
360
N
O
N
361
N
O
N
362
N
P
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
C
N
368
R
C
N
369
N
O
N
370
S
C
N
371
N
O
N
372
N
C
N
373
R
C
N
374
N
N
N
375
N
C
N
376
N
O
N
377
N
N
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
S
P
N
401
N
O
N
402
N
O
N
403
N
O
N
404
N
P
N
405
N
O
N
406
N
O
N
407
N
O
N
408
N
O
N
409
N
C
N
410
R
C
N
411
N
O
N
412
S
C
N
413
N
O
N
414
N
C
N
415
R
C
Y
416
N
N
Y
417
N
C
N
418
N
O
Y
419
N
N
Y
420
N
C
N
421
N
O
Y
422
N
C
N
423
N
C
Y
424
N
C
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
sing
N
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
doub
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
327
1077
1092
10.1016/S0022-2836(03)00202-X
12662932
Mycobacterium tuberculosis Thymidylate Kinase: Structural Studies of Intermediates along the
Reaction Pathway
2003
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
607
614
10.1107/S0907444902002135
Cryo-Photolysis of Caged Compounds: A Technique for Trapping Intermediate States in Protein
Crystals
2002
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
87
100
10.1006/jmbi.2001.4843
X-Ray Structure of Tmp Kinase from Mycobacterium Tuberculosis Complexed with Tmp at 1.95
A Resolution
2001
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
226
228
10.1107/S0907444999016212
Crystallization and Preliminary X-Ray Analysis of the Thymidylate Kinase from Mycobacterium
Tuberculosis
2000
10.2210/pdb1n5j/pdb
pdb_00001n5j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-05-15
MARRESEARCH
Silicon
SINGLE WAVELENGTH
M
x-ray
1
0.90
1.0
BM30A
ESRF
0.90
SYNCHROTRON
ESRF BEAMLINE BM30A
22662.525
THYMIDYLATE KINASE
2.7.4.9
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
402.188
THYMIDINE-5'-DIPHOSPHATE
1
syn
non-polymer
482.168
THYMIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
154
nat
water
no
no
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT
IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR
ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT
IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR
ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mycobacterium
Escherichia
sample
1773
Mycobacterium tuberculosis
562
Escherichia coli
Plasmid
PET22B
1
2.29
45.84
5.4
Soaking in 30mM ATP, 40% PEG 2000, 10 mM ammonium sulphate, 0.1 M MES pH 5.4, 25 mM magnesium acetate, 2 mM mercaptoethanol, 3 mM EDTA, 1.5 mM DTT, VAPOR DIFFUSION, HANGING DROP + SOAKING
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-04-15
1
1
2007-10-16
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE
MONOPHOSPHATE (TMP) AND MAGNESIUM (1.6 A RESOLUTION)
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE
MONOPHOSPHATE (TMP) AND MAGNESIUM (1.95 A RESOLUTION)
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE CRYSTALLIZED IN
SODIUM MALONATE (RESOLUTION 2.1 A)
CRYSTAL STRUCTURE OF INACTIVE MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH
THYMIDINE MONOPHOSPHATE (TMP) AT PH 4.6 (RESOLUTION 1.85 A)
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE CRYSTALLIZED IN SODIUM MALONATE, AFTER
CATALYSIS IN THE CRYSTAL (2.3 A RESOLUTION)
RCSB
Y
RCSB
2002-11-06
REL
REL
SO4
SULFATE ION
MG
MAGNESIUM ION
TYD
THYMIDINE-5'-DIPHOSPHATE
TTP
THYMIDINE-5'-TRIPHOSPHATE
HOH
water
1GSI
PDB
experimental model
SO4
209
2
SO4
SO4
215
A
SO4
210
2
SO4
SO4
216
A
MG
211
3
MG
MG
217
A
TYD
213
4
TYD
TYD
218
A
TTP
214
5
TTP
TTP
219
A
HOH
1001
6
HOH
HOH
1001
A
HOH
1002
6
HOH
HOH
1002
A
HOH
1003
6
HOH
HOH
1003
A
HOH
1004
6
HOH
HOH
1004
A
HOH
1006
6
HOH
HOH
1006
A
HOH
1007
6
HOH
HOH
1007
A
HOH
1008
6
HOH
HOH
1008
A
HOH
1009
6
HOH
HOH
1009
A
HOH
1010
6
HOH
HOH
1010
A
HOH
1011
6
HOH
HOH
1011
A
HOH
1012
6
HOH
HOH
1012
A
HOH
1013
6
HOH
HOH
1013
A
HOH
1014
6
HOH
HOH
1014
A
HOH
1015
6
HOH
HOH
1015
A
HOH
1016
6
HOH
HOH
1016
A
HOH
1017
6
HOH
HOH
1017
A
HOH
1018
6
HOH
HOH
1018
A
HOH
1020
6
HOH
HOH
1020
A
HOH
1021
6
HOH
HOH
1021
A
HOH
1022
6
HOH
HOH
1022
A
HOH
1023
6
HOH
HOH
1023
A
HOH
1024
6
HOH
HOH
1024
A
HOH
1025
6
HOH
HOH
1025
A
HOH
1026
6
HOH
HOH
1026
A
HOH
1027
6
HOH
HOH
1027
A
HOH
1028
6
HOH
HOH
1028
A
HOH
1029
6
HOH
HOH
1029
A
HOH
1030
6
HOH
HOH
1030
A
HOH
1032
6
HOH
HOH
1032
A
HOH
1033
6
HOH
HOH
1033
A
HOH
1034
6
HOH
HOH
1034
A
HOH
1035
6
HOH
HOH
1035
A
HOH
1036
6
HOH
HOH
1036
A
HOH
1038
6
HOH
HOH
1038
A
HOH
1039
6
HOH
HOH
1039
A
HOH
1040
6
HOH
HOH
1040
A
HOH
1041
6
HOH
HOH
1041
A
HOH
1042
6
HOH
HOH
1042
A
HOH
1043
6
HOH
HOH
1043
A
HOH
1044
6
HOH
HOH
1044
A
HOH
1045
6
HOH
HOH
1045
A
HOH
1046
6
HOH
HOH
1046
A
HOH
1047
6
HOH
HOH
1047
A
HOH
1048
6
HOH
HOH
1048
A
HOH
1049
6
HOH
HOH
1049
A
HOH
1051
6
HOH
HOH
1051
A
HOH
1052
6
HOH
HOH
1052
A
HOH
1053
6
HOH
HOH
1053
A
HOH
1054
6
HOH
HOH
1054
A
HOH
1055
6
HOH
HOH
1055
A
HOH
1056
6
HOH
HOH
1056
A
HOH
1057
6
HOH
HOH
1057
A
HOH
1058
6
HOH
HOH
1058
A
HOH
1059
6
HOH
HOH
1059
A
HOH
1060
6
HOH
HOH
1060
A
HOH
1061
6
HOH
HOH
1061
A
HOH
1062
6
HOH
HOH
1062
A
HOH
1063
6
HOH
HOH
1063
A
HOH
1064
6
HOH
HOH
1064
A
HOH
1065
6
HOH
HOH
1065
A
HOH
1066
6
HOH
HOH
1066
A
HOH
1067
6
HOH
HOH
1067
A
HOH
1068
6
HOH
HOH
1068
A
HOH
1070
6
HOH
HOH
1070
A
HOH
1071
6
HOH
HOH
1071
A
HOH
1072
6
HOH
HOH
1072
A
HOH
1073
6
HOH
HOH
1073
A
HOH
1074
6
HOH
HOH
1074
A
HOH
1075
6
HOH
HOH
1075
A
HOH
1076
6
HOH
HOH
1076
A
HOH
1077
6
HOH
HOH
1077
A
HOH
1078
6
HOH
HOH
1078
A
HOH
1079
6
HOH
HOH
1079
A
HOH
1080
6
HOH
HOH
1080
A
HOH
1081
6
HOH
HOH
1081
A
HOH
1082
6
HOH
HOH
1082
A
HOH
1083
6
HOH
HOH
1083
A
HOH
1084
6
HOH
HOH
1084
A
HOH
1085
6
HOH
HOH
1085
A
HOH
1086
6
HOH
HOH
1086
A
HOH
1087
6
HOH
HOH
1087
A
HOH
1088
6
HOH
HOH
1088
A
HOH
1089
6
HOH
HOH
1089
A
HOH
1090
6
HOH
HOH
1090
A
HOH
1091
6
HOH
HOH
1091
A
HOH
1092
6
HOH
HOH
1092
A
HOH
1093
6
HOH
HOH
1093
A
HOH
1094
6
HOH
HOH
1094
A
HOH
1095
6
HOH
HOH
1095
A
HOH
1096
6
HOH
HOH
1096
A
HOH
1097
6
HOH
HOH
1097
A
HOH
1098
6
HOH
HOH
1098
A
HOH
1099
6
HOH
HOH
1099
A
HOH
1100
6
HOH
HOH
1100
A
HOH
1101
6
HOH
HOH
1101
A
HOH
1102
6
HOH
HOH
1102
A
HOH
1103
6
HOH
HOH
1103
A
HOH
1104
6
HOH
HOH
1104
A
HOH
1105
6
HOH
HOH
1105
A
HOH
1106
6
HOH
HOH
1106
A
HOH
1107
6
HOH
HOH
1107
A
HOH
1108
6
HOH
HOH
1108
A
HOH
1111
6
HOH
HOH
1111
A
HOH
1112
6
HOH
HOH
1112
A
HOH
1113
6
HOH
HOH
1113
A
HOH
1114
6
HOH
HOH
1114
A
HOH
1115
6
HOH
HOH
1115
A
HOH
1116
6
HOH
HOH
1116
A
HOH
1117
6
HOH
HOH
1117
A
HOH
1118
6
HOH
HOH
1118
A
HOH
1119
6
HOH
HOH
1119
A
HOH
1120
6
HOH
HOH
1120
A
HOH
1121
6
HOH
HOH
1121
A
HOH
1122
6
HOH
HOH
1122
A
HOH
1123
6
HOH
HOH
1123
A
HOH
1124
6
HOH
HOH
1124
A
HOH
1125
6
HOH
HOH
1125
A
HOH
1126
6
HOH
HOH
1126
A
HOH
1127
6
HOH
HOH
1127
A
HOH
1128
6
HOH
HOH
1128
A
HOH
1129
6
HOH
HOH
1129
A
HOH
1130
6
HOH
HOH
1130
A
HOH
1131
6
HOH
HOH
1131
A
HOH
1132
6
HOH
HOH
1132
A
HOH
1133
6
HOH
HOH
1133
A
HOH
1134
6
HOH
HOH
1134
A
HOH
1135
6
HOH
HOH
1135
A
HOH
1137
6
HOH
HOH
1137
A
HOH
1138
6
HOH
HOH
1138
A
HOH
1139
6
HOH
HOH
1139
A
HOH
1140
6
HOH
HOH
1140
A
HOH
1142
6
HOH
HOH
1142
A
HOH
1143
6
HOH
HOH
1143
A
HOH
1145
6
HOH
HOH
1145
A
HOH
1146
6
HOH
HOH
1146
A
HOH
1147
6
HOH
HOH
1147
A
HOH
1148
6
HOH
HOH
1148
A
HOH
1149
6
HOH
HOH
1149
A
HOH
1150
6
HOH
HOH
1150
A
HOH
1151
6
HOH
HOH
1151
A
HOH
1152
6
HOH
HOH
1152
A
HOH
1153
6
HOH
HOH
1153
A
HOH
1154
6
HOH
HOH
1154
A
HOH
1155
6
HOH
HOH
1155
A
HOH
1156
6
HOH
HOH
1156
A
HOH
1157
6
HOH
HOH
1157
A
HOH
1158
6
HOH
HOH
1158
A
HOH
1159
6
HOH
HOH
1159
A
HOH
1160
6
HOH
HOH
1160
A
HOH
1161
6
HOH
HOH
1161
A
HOH
1162
6
HOH
HOH
1162
A
HOH
1163
6
HOH
HOH
1163
A
HOH
1169
6
HOH
HOH
1169
A
HOH
1234
6
HOH
HOH
1234
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ILE
3
n
3
ILE
3
A
ALA
4
n
4
ALA
4
A
ILE
5
n
5
ILE
5
A
GLU
6
n
6
GLU
6
A
GLY
7
n
7
GLY
7
A
VAL
8
n
8
VAL
8
A
ASP
9
n
9
ASP
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
THR
15
n
15
THR
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
LYS
19
n
19
LYS
19
A
LEU
20
n
20
LEU
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
PHE
24
n
24
PHE
24
A
ARG
25
n
25
ARG
25
A
ALA
26
n
26
ALA
26
A
ALA
27
n
27
ALA
27
A
GLY
28
n
28
GLY
28
A
ARG
29
n
29
ARG
29
A
SER
30
n
30
SER
30
A
VAL
31
n
31
VAL
31
A
ALA
32
n
32
ALA
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
ALA
35
n
35
ALA
35
A
PHE
36
n
36
PHE
36
A
PRO
37
n
37
PRO
37
A
ARG
38
n
38
ARG
38
A
TYR
39
n
39
TYR
39
A
GLY
40
n
40
GLY
40
A
GLN
41
n
41
GLN
41
A
SER
42
n
42
SER
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
ALA
45
n
45
ALA
45
A
ASP
46
n
46
ASP
46
A
ILE
47
n
47
ILE
47
A
ALA
48
n
48
ALA
48
A
ALA
49
n
49
ALA
49
A
GLU
50
n
50
GLU
50
A
ALA
51
n
51
ALA
51
A
LEU
52
n
52
LEU
52
A
HIS
53
n
53
HIS
53
A
GLY
54
n
54
GLY
54
A
GLU
55
n
55
GLU
55
A
HIS
56
n
56
HIS
56
A
GLY
57
n
57
GLY
57
A
ASP
58
n
58
ASP
58
A
LEU
59
n
59
LEU
59
A
ALA
60
n
60
ALA
60
A
SER
61
n
61
SER
61
A
SER
62
n
62
SER
62
A
VAL
63
n
63
VAL
63
A
TYR
64
n
64
TYR
64
A
ALA
65
n
65
ALA
65
A
MET
66
n
66
MET
66
A
ALA
67
n
67
ALA
67
A
THR
68
n
68
THR
68
A
LEU
69
n
69
LEU
69
A
PHE
70
n
70
PHE
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
ASP
73
n
73
ASP
73
A
ARG
74
n
74
ARG
74
A
ALA
75
n
75
ALA
75
A
GLY
76
n
76
GLY
76
A
ALA
77
n
77
ALA
77
A
VAL
78
n
78
VAL
78
A
HIS
79
n
79
HIS
79
A
THR
80
n
80
THR
80
A
ILE
81
n
81
ILE
81
A
GLN
82
n
82
GLN
82
A
GLY
83
n
83
GLY
83
A
LEU
84
n
84
LEU
84
A
CYS
85
n
85
CYS
85
A
ARG
86
n
86
ARG
86
A
GLY
87
n
87
GLY
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
VAL
90
n
90
VAL
90
A
VAL
91
n
91
VAL
91
A
ILE
92
n
92
ILE
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
ARG
95
n
95
ARG
95
A
TYR
96
n
96
TYR
96
A
VAL
97
n
97
VAL
97
A
ALA
98
n
98
ALA
98
A
SER
99
n
99
SER
99
A
ASN
100
n
100
ASN
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
TYR
103
n
103
TYR
103
A
SER
104
n
104
SER
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
ARG
107
n
107
ARG
107
A
LEU
108
n
108
LEU
108
A
HIS
109
n
109
HIS
109
A
GLU
110
n
110
GLU
110
A
ASN
111
n
111
ASN
111
A
ALA
112
n
112
ALA
112
A
ALA
113
n
113
ALA
113
A
GLY
114
n
114
GLY
114
A
LYS
115
n
115
LYS
115
A
ALA
116
n
116
ALA
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
TRP
119
n
119
TRP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ARG
122
n
122
ARG
122
A
ILE
123
n
123
ILE
123
A
GLU
124
n
124
GLU
124
A
PHE
125
n
125
PHE
125
A
ALA
126
n
126
ALA
126
A
ARG
127
n
127
ARG
127
A
LEU
128
n
128
LEU
128
A
GLY
129
n
129
GLY
129
A
LEU
130
n
130
LEU
130
A
PRO
131
n
131
PRO
131
A
LYS
132
n
132
LYS
132
A
PRO
133
n
133
PRO
133
A
ASP
134
n
134
ASP
134
A
TRP
135
n
135
TRP
135
A
GLN
136
n
136
GLN
136
A
VAL
137
n
137
VAL
137
A
LEU
138
n
138
LEU
138
A
LEU
139
n
139
LEU
139
A
ALA
140
n
140
ALA
140
A
VAL
141
n
141
VAL
141
A
SER
142
n
142
SER
142
A
ALA
143
n
143
ALA
143
A
GLU
144
n
144
GLU
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
GLY
147
n
147
GLY
147
A
GLU
148
n
148
GLU
148
A
ARG
149
n
149
ARG
149
A
SER
150
n
150
SER
150
A
ARG
151
n
151
ARG
151
A
GLY
152
n
152
GLY
152
A
ARG
153
n
153
ARG
153
A
ALA
154
n
154
ALA
154
A
GLN
155
n
155
GLN
155
A
ARG
156
n
156
ARG
156
A
ASP
157
n
157
ASP
157
A
PRO
158
n
158
PRO
158
A
GLY
159
n
159
GLY
159
A
ARG
160
n
160
ARG
160
A
ALA
161
n
161
ALA
161
A
ARG
162
n
162
ARG
162
A
ASP
163
n
163
ASP
163
A
ASN
164
n
164
ASN
164
A
TYR
165
n
165
TYR
165
A
GLU
166
n
166
GLU
166
A
ARG
167
n
167
ARG
167
A
ASP
168
n
168
ASP
168
A
ALA
169
n
169
ALA
169
A
GLU
170
n
170
GLU
170
A
LEU
171
n
171
LEU
171
A
GLN
172
n
172
GLN
172
A
GLN
173
n
173
GLN
173
A
ARG
174
n
174
ARG
174
A
THR
175
n
175
THR
175
A
GLY
176
n
176
GLY
176
A
ALA
177
n
177
ALA
177
A
VAL
178
n
178
VAL
178
A
TYR
179
n
179
TYR
179
A
ALA
180
n
180
ALA
180
A
GLU
181
n
181
GLU
181
A
LEU
182
n
182
LEU
182
A
ALA
183
n
183
ALA
183
A
ALA
184
n
184
ALA
184
A
GLN
185
n
185
GLN
185
A
GLY
186
n
186
GLY
186
A
TRP
187
n
187
TRP
187
A
GLY
188
n
188
GLY
188
A
GLY
189
n
189
GLY
189
A
ARG
190
n
190
ARG
190
A
TRP
191
n
191
TRP
191
A
LEU
192
n
192
LEU
192
A
VAL
193
n
193
VAL
193
A
VAL
194
n
194
VAL
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
ASP
197
n
197
ASP
197
A
VAL
198
n
198
VAL
198
A
ASP
199
n
199
ASP
199
A
PRO
200
n
200
PRO
200
A
GLY
201
n
201
GLY
201
A
ARG
202
n
202
ARG
202
A
LEU
203
n
203
LEU
203
A
ALA
204
n
204
ALA
204
A
ALA
205
n
205
ALA
205
A
THR
206
n
206
THR
206
A
LEU
207
n
207
LEU
207
A
ALA
208
n
208
ALA
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
n
213
213
A
n
214
214
A
author_defined_assembly
2
dimeric
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
A
D
MG
MG
1_555
A
GLU
166
A
OE1
GLU
166
1_555
99.2
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
A
D
MG
MG
1_555
A
TYD
218
A
E
O2A
TYD
1_555
75.3
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
A
D
MG
MG
1_555
A
TYD
218
A
E
O2A
TYD
1_555
172.3
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
A
D
MG
MG
1_555
A
TYD
218
A
E
O2B
TYD
1_555
161.0
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
A
D
MG
MG
1_555
A
TYD
218
A
E
O2B
TYD
1_555
99.8
A
TYD
218
A
E
O2A
TYD
1_555
A
MG
217
A
D
MG
MG
1_555
A
TYD
218
A
E
O2B
TYD
1_555
85.7
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1009
A
G
O
HOH
1_555
86.3
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1009
A
G
O
HOH
1_555
89.8
A
TYD
218
A
E
O2A
TYD
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1009
A
G
O
HOH
1_555
95.1
A
TYD
218
A
E
O2B
TYD
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1009
A
G
O
HOH
1_555
94.1
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1018
A
G
O
HOH
1_555
86.3
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1018
A
G
O
HOH
1_555
84.0
A
TYD
218
A
E
O2A
TYD
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1018
A
G
O
HOH
1_555
90.2
A
TYD
218
A
E
O2B
TYD
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1018
A
G
O
HOH
1_555
95.2
A
HOH
1009
A
G
O
HOH
1_555
A
MG
217
A
D
MG
MG
1_555
A
HOH
1018
A
G
O
HOH
1_555
169.5
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
B
D
MG
MG
1_555
A
GLU
166
A
OE1
GLU
166
1_555
105.3
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
B
D
MG
MG
1_555
A
TTP
219
B
F
O2A
TTP
1_555
84.6
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
B
D
MG
MG
1_555
A
TTP
219
B
F
O2A
TTP
1_555
167.6
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
B
D
MG
MG
1_555
A
TTP
219
B
F
O2B
TTP
1_555
153.3
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
B
D
MG
MG
1_555
A
TTP
219
B
F
O2B
TTP
1_555
100.5
A
TTP
219
B
F
O2A
TTP
1_555
A
MG
217
B
D
MG
MG
1_555
A
TTP
219
B
F
O2B
TTP
1_555
70.7
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1009
B
G
O
HOH
1_555
85.4
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1009
B
G
O
HOH
1_555
81.9
A
TTP
219
B
F
O2A
TTP
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1009
B
G
O
HOH
1_555
106.7
A
TTP
219
B
F
O2B
TTP
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1009
B
G
O
HOH
1_555
91.9
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1018
B
G
O
HOH
1_555
102.6
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1018
B
G
O
HOH
1_555
84.9
A
TTP
219
B
F
O2A
TTP
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1018
B
G
O
HOH
1_555
85.7
A
TTP
219
B
F
O2B
TTP
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1018
B
G
O
HOH
1_555
86.0
A
HOH
1009
B
G
O
HOH
1_555
A
MG
217
B
D
MG
MG
1_555
A
HOH
1018
B
G
O
HOH
1_555
166.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
32
A
N
ALA
32
A
O
ILE
92
A
O
ILE
92
A
O
LEU
93
A
O
LEU
93
A
N
ILE
3
A
N
ILE
3
A
N
GLU
6
A
N
GLU
6
A
O
VAL
137
A
O
VAL
137
A
N
LEU
138
A
N
LEU
138
A
O
LEU
192
A
O
LEU
192
1
A
CG
GLU
18
A
CG
GLU
18
1
Y
1
A
CD
GLU
18
A
CD
GLU
18
1
Y
1
A
OE1
GLU
18
A
OE1
GLU
18
1
Y
1
A
OE2
GLU
18
A
OE2
GLU
18
1
Y
1
A
CD
LYS
19
A
CD
LYS
19
1
Y
1
A
CE
LYS
19
A
CE
LYS
19
1
Y
1
A
NZ
LYS
19
A
NZ
LYS
19
1
Y
1
A
NE
ARG
29
A
NE
ARG
29
1
Y
1
A
CZ
ARG
29
A
CZ
ARG
29
1
Y
1
A
NH1
ARG
29
A
NH1
ARG
29
1
Y
1
A
NH2
ARG
29
A
NH2
ARG
29
1
Y
1
A
CD
ARG
86
A
CD
ARG
86
1
Y
1
A
NE
ARG
86
A
NE
ARG
86
1
Y
1
A
CZ
ARG
86
A
CZ
ARG
86
1
Y
1
A
NH1
ARG
86
A
NH1
ARG
86
1
Y
1
A
NH2
ARG
86
A
NH2
ARG
86
1
Y
1
A
CG
GLU
144
A
CG
GLU
144
1
Y
1
A
CD
GLU
144
A
CD
GLU
144
1
Y
1
A
OE1
GLU
144
A
OE1
GLU
144
1
Y
1
A
OE2
GLU
144
A
OE2
GLU
144
1
Y
1
A
CG
LEU
145
A
CG
LEU
145
1
Y
1
A
CD1
LEU
145
A
CD1
LEU
145
1
Y
1
A
CD2
LEU
145
A
CD2
LEU
145
1
Y
1
A
CD
GLU
148
A
CD
GLU
148
1
Y
1
A
OE1
GLU
148
A
OE1
GLU
148
1
Y
1
A
OE2
GLU
148
A
OE2
GLU
148
1
Y
1
A
PRO
209
A
PRO
209
1
Y
1
A
PRO
210
A
PRO
210
1
Y
1
A
ASP
211
A
ASP
211
1
Y
1
A
VAL
212
A
VAL
212
1
Y
1
A
PRO
213
A
PRO
213
1
Y
1
A
SER
214
A
SER
214
1
Y
1
A
ARG
95
81.13
144.29
1
A
TYR
96
-154.68
-151.58
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
ION.TOP
WATER.PARAM
WATER.TOP
TMP_TDP_TTP_MOD.PAR
TMP_TDP_TTP_MOD.TOP
19.2
1.88
2.08
0.00
1.88
0.00
-3.77
The structure contains two conformations: conformation A corresponds to the TYD-bound state. Conformation B corresponds to the TTP-bound state.
0.226
0.007
0.215
0.215
0.215
1.85
24.96
929
19047
19047
4.9
92.6
RANDOM
2014027.22
2014027.22
0.000000
1
RESTRAINED
THROUGHOUT
0.0
OTHER
1GSI
Engh & Huber
FLAT MODEL
45.9412
0.358426
0.25
0.22
5.00
0.19
0.14
1.85
24.96
156
1768
66
0
1546
0.005
1.1
20.8
0.73
1.04
1.50
1.50
2.00
2.89
2.00
3.66
2.50
0.27
0.022
0.254
1.97
152
3026
3026
6
4.8
95.1
16.6
1.85
24.96
1N5J
19063
19063
0.0
-3.00
0.055
1
6.0
4.7
94.1
1.85
1.95
2.3
2788
0.316
4.6
94.1
data reduction
DENZO
data scaling
SCALA
refinement
CNS
1.0
data scaling
CCP4
(SCALA)
phasing
CNS
1.0
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE DIPHOSPHATE (TDP) AND THYMIDINE TRIPHOSPHATE (TTP) AT PH 5.4 (1.85 A RESOLUTION)
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
The biological assembly is a dimer generated from the monomer in the asymmetric unit by the operations: x-y, -y, -z.
A
GLY
12
A
GLY
12
HELX_P
A
ALA
27
A
ALA
27
1
1
16
A
SER
42
A
SER
42
HELX_P
A
HIS
53
A
HIS
53
1
2
12
A
ASP
58
A
ASP
58
HELX_P
A
SER
61
A
SER
61
5
3
4
A
SER
62
A
SER
62
HELX_P
A
GLY
76
A
GLY
76
1
4
15
A
ALA
77
A
ALA
77
HELX_P
A
TYR
88
A
TYR
88
1
5
12
A
TYR
96
A
TYR
96
HELX_P
A
LEU
108
A
LEU
108
1
6
13
A
GLY
114
A
GLY
114
HELX_P
A
PHE
125
A
PHE
125
1
7
12
A
SER
142
A
SER
142
HELX_P
A
ASP
157
A
ASP
157
1
8
16
A
PRO
158
A
PRO
158
HELX_P
A
ALA
161
A
ALA
161
5
9
4
A
ASP
168
A
ASP
168
HELX_P
A
GLY
186
A
GLY
186
1
10
19
A
ASP
199
A
ASP
199
HELX_P
A
ALA
208
A
ALA
208
1
11
10
metalc
2.399
A
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
D
MG
MG
1_555
metalc
2.158
B
A
ASP
9
A
OD1
ASP
9
1_555
A
MG
217
D
MG
MG
1_555
metalc
2.217
A
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
D
MG
MG
1_555
metalc
2.267
B
A
GLU
166
A
OE1
GLU
166
1_555
A
MG
217
D
MG
MG
1_555
metalc
2.087
A
A
A
MG
217
D
MG
MG
1_555
A
TYD
218
E
O2A
TYD
1_555
metalc
1.958
A
A
A
MG
217
D
MG
MG
1_555
A
TYD
218
E
O2B
TYD
1_555
metalc
2.433
B
B
A
MG
217
D
MG
MG
1_555
A
TTP
219
F
O2A
TTP
1_555
metalc
2.394
B
B
A
MG
217
D
MG
MG
1_555
A
TTP
219
F
O2B
TTP
1_555
metalc
1.952
A
A
A
MG
217
D
MG
MG
1_555
A
HOH
1009
G
O
HOH
1_555
metalc
2.547
B
B
A
MG
217
D
MG
MG
1_555
A
HOH
1009
G
O
HOH
1_555
metalc
2.156
A
A
A
MG
217
D
MG
MG
1_555
A
HOH
1018
G
O
HOH
1_555
metalc
2.563
B
B
A
MG
217
D
MG
MG
1_555
A
HOH
1018
G
O
HOH
1_555
TRANSFERASE
TRANSFERASE (ATP:TMP PHOSPHOTRANSFERASE), KINASE, TRANSFERASE
A
PHE
36
A
PHE
36
1
A
PRO
37
A
PRO
37
0.10
KTHY_MYCTU
UNP
1
1
O05891
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT
IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR
ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
1
208
1N5J
1
208
O05891
A
1
1
208
5
parallel
parallel
parallel
parallel
A
VAL
31
A
VAL
31
A
ALA
35
A
ALA
35
A
VAL
90
A
VAL
90
A
ASP
94
A
ASP
94
A
LEU
2
A
LEU
2
A
GLU
6
A
GLU
6
A
TRP
135
A
TRP
135
A
LEU
139
A
LEU
139
A
ARG
190
A
ARG
190
A
VAL
194
A
VAL
194
BINDING SITE FOR RESIDUE MG A 217
A
MG
217
Software
6
BINDING SITE FOR RESIDUE SO4 A 215
A
SO4
215
Software
9
BINDING SITE FOR RESIDUE SO4 A 216
A
SO4
216
Software
4
BINDING SITE FOR RESIDUE TTP A 219
A
TTP
219
Software
21
BINDING SITE FOR RESIDUE TYD A 218
A
TYD
218
Software
17
A
ASP
9
A
ASP
9
6
1_555
A
GLU
166
A
GLU
166
6
1_555
A
TYD
218
E
TYD
6
1_555
A
TTP
219
F
TTP
6
1_555
A
HOH
1009
G
HOH
6
1_555
A
HOH
1018
G
HOH
6
1_555
A
GLY
10
A
GLY
10
9
1_555
A
GLY
12
A
GLY
12
9
1_555
A
LYS
13
A
LYS
13
9
1_555
A
ARG
14
A
ARG
14
9
1_555
A
ARG
153
A
ARG
153
9
1_555
A
HOH
1014
G
HOH
9
1_555
A
HOH
1027
G
HOH
9
1_555
A
HOH
1041
G
HOH
9
1_555
A
HOH
1140
G
HOH
9
1_555
A
ALA
154
A
ALA
154
4
1_555
A
ARG
162
A
ARG
162
4
1_555
A
ARG
167
A
ARG
167
4
1_555
A
HOH
1030
G
HOH
4
1_555
A
ASP
9
A
ASP
9
21
1_555
A
ARG
14
A
ARG
14
21
1_555
A
PRO
37
A
PRO
37
21
1_555
A
TYR
39
A
TYR
39
21
1_555
A
PHE
70
A
PHE
70
21
1_555
A
ARG
74
A
ARG
74
21
1_555
A
ARG
95
A
ARG
95
21
1_555
A
ASN
100
A
ASN
100
21
1_555
A
TYR
103
A
TYR
103
21
1_555
A
TYR
165
A
TYR
165
21
1_555
A
MG
217
D
MG
21
1_555
A
HOH
1002
G
HOH
21
1_555
A
HOH
1009
G
HOH
21
1_555
A
HOH
1014
G
HOH
21
1_555
A
HOH
1018
G
HOH
21
1_555
A
HOH
1046
G
HOH
21
1_555
A
HOH
1119
G
HOH
21
1_555
A
HOH
1128
G
HOH
21
1_555
A
HOH
1140
G
HOH
21
1_555
A
HOH
1151
G
HOH
21
1_555
A
HOH
1234
G
HOH
21
1_555
A
ASP
9
A
ASP
9
17
1_555
A
TYR
39
A
TYR
39
17
1_555
A
PHE
70
A
PHE
70
17
1_555
A
ARG
74
A
ARG
74
17
1_555
A
ARG
95
A
ARG
95
17
1_555
A
ASN
100
A
ASN
100
17
1_555
A
TYR
165
A
TYR
165
17
1_555
A
GLU
166
A
GLU
166
17
1_555
A
MG
217
D
MG
17
1_555
A
HOH
1002
G
HOH
17
1_555
A
HOH
1009
G
HOH
17
1_555
A
HOH
1014
G
HOH
17
1_555
A
HOH
1018
G
HOH
17
1_555
A
HOH
1046
G
HOH
17
1_555
A
HOH
1119
G
HOH
17
1_555
A
HOH
1151
G
HOH
17
1_555
A
HOH
1234
G
HOH
17
1_555
179
P 65 2 2