1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yang, Y. Sanchez, J.F. Strub, M.P. Brutscher, B. Aumelas, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 4669 4680 10.1021/bi027133c 12705830 NMR Structure of the Cathelin-like domain of the protegrin-3 Precursor 2003 10.2210/pdb1n5p/pdb pdb_00001n5p 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 11736.211 protegrins cathelin-like domain 1 man polymer protegrin 1, protegrin 2, protegrin 3, protegrin 4, protegrin 5 no no GSHMQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVK QCVGTVTLDQIKDPLDITCNEVQGV GSHMQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVK QCVGTVTLDQIKDPLDITCNEVQGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pig Sus Escherichia sample 9823 Sus scrofa 562 Escherichia coli plasmid pET-15b database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-03 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details STRUCTURE WITH THE R87-P88 AND D118-P119 AMIDE BONDS IN THE CIS CONFORMATION RCSB Y PDBJ 2002-11-07 REL structures with the least restraint violations 60 15 HNCA,HNCO,CBCA(CO)NH,3D_15N-separated_NOESY HC(C)H-TOCSY,3D_13C-separated_NOESY 100mM 6.2 ambient 300 K distance geometry and simulated annealing 1.5-2mM; U-15N, 13C; 50mM phosphate buffer; pH 6.2 95% H2O/5% D2O 1.5-2mM; U-15N, 13C; 50mM phosphate buffer; pH 6.2 100% D2O Delsuc, M.A. processing Gifa 4.4 Rice, L.M., Brunger, A.T. refinement X-PLOR 3.8 collection XwinNMR 2.0 600 Bruker AMX 800 Varian INOVA GLY 26 n 1 GLY 26 A SER 27 n 2 SER 27 A HIS 28 n 3 HIS 28 A MET 29 n 4 MET 29 A GLN 30 n 5 GLN 30 A ALA 31 n 6 ALA 31 A LEU 32 n 7 LEU 32 A SER 33 n 8 SER 33 A TYR 34 n 9 TYR 34 A ARG 35 n 10 ARG 35 A GLU 36 n 11 GLU 36 A ALA 37 n 12 ALA 37 A VAL 38 n 13 VAL 38 A LEU 39 n 14 LEU 39 A ARG 40 n 15 ARG 40 A ALA 41 n 16 ALA 41 A VAL 42 n 17 VAL 42 A ASP 43 n 18 ASP 43 A ARG 44 n 19 ARG 44 A LEU 45 n 20 LEU 45 A ASN 46 n 21 ASN 46 A GLU 47 n 22 GLU 47 A GLN 48 n 23 GLN 48 A SER 49 n 24 SER 49 A SER 50 n 25 SER 50 A GLU 51 n 26 GLU 51 A ALA 52 n 27 ALA 52 A ASN 53 n 28 ASN 53 A LEU 54 n 29 LEU 54 A TYR 55 n 30 TYR 55 A ARG 56 n 31 ARG 56 A LEU 57 n 32 LEU 57 A LEU 58 n 33 LEU 58 A GLU 59 n 34 GLU 59 A LEU 60 n 35 LEU 60 A ASP 61 n 36 ASP 61 A GLN 62 n 37 GLN 62 A PRO 63 n 38 PRO 63 A PRO 64 n 39 PRO 64 A LYS 65 n 40 LYS 65 A ALA 66 n 41 ALA 66 A ASP 67 n 42 ASP 67 A GLU 68 n 43 GLU 68 A ASP 69 n 44 ASP 69 A PRO 70 n 45 PRO 70 A GLY 71 n 46 GLY 71 A THR 72 n 47 THR 72 A PRO 73 n 48 PRO 73 A LYS 74 n 49 LYS 74 A PRO 75 n 50 PRO 75 A VAL 76 n 51 VAL 76 A SER 77 n 52 SER 77 A PHE 78 n 53 PHE 78 A THR 79 n 54 THR 79 A VAL 80 n 55 VAL 80 A LYS 81 n 56 LYS 81 A GLU 82 n 57 GLU 82 A THR 83 n 58 THR 83 A VAL 84 n 59 VAL 84 A CYS 85 n 60 CYS 85 A PRO 86 n 61 PRO 86 A ARG 87 n 62 ARG 87 A PRO 88 n 63 PRO 88 A THR 89 n 64 THR 89 A ARG 90 n 65 ARG 90 A GLN 91 n 66 GLN 91 A PRO 92 n 67 PRO 92 A PRO 93 n 68 PRO 93 A GLU 94 n 69 GLU 94 A LEU 95 n 70 LEU 95 A CYS 96 n 71 CYS 96 A ASP 97 n 72 ASP 97 A PHE 98 n 73 PHE 98 A LYS 99 n 74 LYS 99 A GLU 100 n 75 GLU 100 A ASN 101 n 76 ASN 101 A GLY 102 n 77 GLY 102 A ARG 103 n 78 ARG 103 A VAL 104 n 79 VAL 104 A LYS 105 n 80 LYS 105 A GLN 106 n 81 GLN 106 A CYS 107 n 82 CYS 107 A VAL 108 n 83 VAL 108 A GLY 109 n 84 GLY 109 A THR 110 n 85 THR 110 A VAL 111 n 86 VAL 111 A THR 112 n 87 THR 112 A LEU 113 n 88 LEU 113 A ASP 114 n 89 ASP 114 A GLN 115 n 90 GLN 115 A ILE 116 n 91 ILE 116 A LYS 117 n 92 LYS 117 A ASP 118 n 93 ASP 118 A PRO 119 n 94 PRO 119 A LEU 120 n 95 LEU 120 A ASP 121 n 96 ASP 121 A ILE 122 n 97 ILE 122 A THR 123 n 98 THR 123 A CYS 124 n 99 CYS 124 A ASN 125 n 100 ASN 125 A GLU 126 n 101 GLU 126 A VAL 127 n 102 VAL 127 A GLN 128 n 103 GLN 128 A GLY 129 n 104 GLY 129 A VAL 130 n 105 VAL 130 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 59 A N GLU 34 A O THR 79 A O THR 54 A N VAL 76 A N VAL 51 A O GLY 109 A O GLY 84 A N VAL 108 A N VAL 83 A O THR 123 A O THR 98 2 A A O H SER ALA 33 37 1.58 2 A A O HZ2 ASP LYS 69 74 1.58 3 A A HZ1 O LYS LYS 81 99 1.60 7 A A O HZ2 ASP LYS 69 74 1.51 9 A A O HZ2 ASP LYS 69 74 1.51 12 A A H O VAL GLY 76 109 1.58 14 A A O HZ2 ASP LYS 69 74 1.54 14 A A H O LYS VAL 74 111 1.56 14 A A H O VAL GLY 76 109 1.57 1 A ARG 35 0.293 SIDE CHAIN 1 A ARG 40 0.316 SIDE CHAIN 1 A ARG 44 0.311 SIDE CHAIN 1 A ARG 56 0.306 SIDE CHAIN 1 A ARG 87 0.315 SIDE CHAIN 1 A ARG 90 0.302 SIDE CHAIN 1 A ARG 103 0.312 SIDE CHAIN 2 A ARG 35 0.299 SIDE CHAIN 2 A ARG 40 0.312 SIDE CHAIN 2 A ARG 44 0.263 SIDE CHAIN 2 A ARG 56 0.317 SIDE CHAIN 2 A ARG 87 0.314 SIDE CHAIN 2 A ARG 90 0.297 SIDE CHAIN 2 A ARG 103 0.314 SIDE CHAIN 3 A ARG 35 0.311 SIDE CHAIN 3 A ARG 40 0.318 SIDE CHAIN 3 A ARG 44 0.317 SIDE CHAIN 3 A ARG 56 0.294 SIDE CHAIN 3 A ARG 87 0.116 SIDE CHAIN 3 A ARG 90 0.233 SIDE CHAIN 3 A ARG 103 0.313 SIDE CHAIN 4 A ARG 35 0.311 SIDE CHAIN 4 A ARG 40 0.247 SIDE CHAIN 4 A ARG 44 0.318 SIDE CHAIN 4 A ARG 56 0.297 SIDE CHAIN 4 A ARG 87 0.285 SIDE CHAIN 4 A ARG 90 0.312 SIDE CHAIN 4 A ARG 103 0.316 SIDE CHAIN 5 A ARG 35 0.301 SIDE CHAIN 5 A ARG 40 0.198 SIDE CHAIN 5 A ARG 44 0.314 SIDE CHAIN 5 A ARG 56 0.219 SIDE CHAIN 5 A ARG 87 0.314 SIDE CHAIN 5 A ARG 90 0.317 SIDE CHAIN 5 A ARG 103 0.282 SIDE CHAIN 6 A ARG 35 0.315 SIDE CHAIN 6 A ARG 40 0.301 SIDE CHAIN 6 A ARG 44 0.286 SIDE CHAIN 6 A ARG 56 0.275 SIDE CHAIN 6 A ARG 87 0.216 SIDE CHAIN 6 A ARG 90 0.315 SIDE CHAIN 6 A ARG 103 0.246 SIDE CHAIN 7 A ARG 35 0.265 SIDE CHAIN 7 A ARG 40 0.296 SIDE CHAIN 7 A ARG 44 0.271 SIDE CHAIN 7 A ARG 56 0.252 SIDE CHAIN 7 A ARG 87 0.264 SIDE CHAIN 7 A ARG 90 0.307 SIDE CHAIN 7 A ARG 103 0.317 SIDE CHAIN 8 A ARG 35 0.314 SIDE CHAIN 8 A ARG 40 0.277 SIDE CHAIN 8 A ARG 44 0.292 SIDE CHAIN 8 A ARG 56 0.314 SIDE CHAIN 8 A ARG 87 0.255 SIDE CHAIN 8 A ARG 90 0.315 SIDE CHAIN 8 A ARG 103 0.306 SIDE CHAIN 9 A ARG 35 0.314 SIDE CHAIN 9 A ARG 40 0.258 SIDE CHAIN 9 A ARG 44 0.311 SIDE CHAIN 9 A ARG 56 0.313 SIDE CHAIN 9 A ARG 87 0.317 SIDE CHAIN 9 A ARG 90 0.317 SIDE CHAIN 9 A ARG 103 0.319 SIDE CHAIN 10 A ARG 35 0.315 SIDE CHAIN 10 A ARG 40 0.298 SIDE CHAIN 10 A ARG 44 0.317 SIDE CHAIN 10 A ARG 56 0.213 SIDE CHAIN 10 A ARG 87 0.304 SIDE CHAIN 10 A ARG 90 0.317 SIDE CHAIN 10 A ARG 103 0.233 SIDE CHAIN 11 A ARG 35 0.306 SIDE CHAIN 11 A ARG 40 0.319 SIDE CHAIN 11 A ARG 44 0.311 SIDE CHAIN 11 A ARG 56 0.307 SIDE CHAIN 11 A ARG 87 0.318 SIDE CHAIN 11 A ARG 90 0.317 SIDE CHAIN 11 A ARG 103 0.282 SIDE CHAIN 12 A ARG 35 0.299 SIDE CHAIN 12 A ARG 40 0.314 SIDE CHAIN 12 A ARG 44 0.302 SIDE CHAIN 12 A ARG 56 0.312 SIDE CHAIN 12 A ARG 87 0.283 SIDE CHAIN 12 A ARG 90 0.306 SIDE CHAIN 12 A ARG 103 0.302 SIDE CHAIN 13 A ARG 35 0.316 SIDE CHAIN 13 A ARG 40 0.293 SIDE CHAIN 13 A ARG 44 0.307 SIDE CHAIN 13 A ARG 56 0.271 SIDE CHAIN 13 A ARG 87 0.310 SIDE CHAIN 13 A ARG 90 0.318 SIDE CHAIN 13 A ARG 103 0.284 SIDE CHAIN 14 A ARG 35 0.317 SIDE CHAIN 14 A ARG 40 0.233 SIDE CHAIN 14 A ARG 44 0.318 SIDE CHAIN 14 A ARG 56 0.311 SIDE CHAIN 14 A ARG 87 0.317 SIDE CHAIN 14 A ARG 90 0.315 SIDE CHAIN 14 A ARG 103 0.287 SIDE CHAIN 15 A ARG 35 0.318 SIDE CHAIN 15 A ARG 40 0.312 SIDE CHAIN 15 A ARG 44 0.317 SIDE CHAIN 15 A ARG 56 0.315 SIDE CHAIN 15 A ARG 87 0.316 SIDE CHAIN 15 A ARG 90 0.315 SIDE CHAIN 15 A ARG 103 0.248 SIDE CHAIN 1 A MET 29 67.91 158.10 1 A GLN 30 66.62 117.93 1 A LEU 32 -163.23 67.68 1 A TYR 34 68.28 -54.04 1 A SER 50 -101.95 43.01 1 A LYS 65 51.26 76.82 1 A GLU 68 -152.35 29.54 1 A ASP 69 -174.13 95.30 1 A VAL 84 -102.81 40.78 1 A ASP 97 -77.93 -149.68 1 A ILE 116 -98.59 -154.11 1 A LYS 117 55.75 72.94 1 A GLU 126 60.55 173.78 2 A SER 33 172.98 -29.47 2 A ALA 66 -98.17 -73.92 2 A ASP 69 57.60 80.68 2 A VAL 84 -92.37 43.48 2 A ASP 97 -80.55 -136.47 2 A ASP 114 -157.91 -56.74 2 A LYS 117 -166.61 90.34 2 A LEU 120 51.33 89.90 2 A ASN 125 -144.42 35.86 2 A GLU 126 64.59 152.01 3 A HIS 28 59.84 -169.04 3 A ALA 31 57.30 81.31 3 A SER 50 -84.96 -73.19 3 A GLU 51 55.65 -175.23 3 A ALA 66 -96.70 -74.33 3 A ASP 69 59.97 85.53 3 A VAL 84 -81.69 43.99 3 A ASP 97 -88.01 -146.32 3 A ASP 114 -120.03 -54.29 3 A ILE 116 -92.33 -159.09 3 A LYS 117 59.50 97.56 3 A GLU 126 -149.77 20.10 4 A GLN 30 63.84 178.10 4 A SER 50 -152.49 45.44 4 A ALA 52 -174.86 -38.66 4 A ASP 67 -171.57 37.00 4 A ASP 69 63.78 83.15 4 A PRO 86 -76.89 -166.93 4 A ASP 114 -152.73 -60.52 4 A ILE 116 -109.54 -156.72 4 A LYS 117 62.07 90.71 4 A ASP 121 -113.82 52.71 4 A GLU 126 64.71 160.19 5 A SER 27 59.93 -168.98 5 A MET 29 61.79 -168.41 5 A SER 50 -107.11 43.34 5 A GLU 51 -77.74 -166.92 5 A ASP 67 -174.17 44.82 5 A GLU 68 -158.52 34.91 5 A ASP 69 -172.26 105.41 5 A ASP 97 -78.64 -145.32 5 A ILE 116 -97.80 -151.21 5 A LYS 117 57.03 72.74 5 A GLU 126 58.54 172.62 6 A HIS 28 -122.24 -51.00 6 A GLN 30 62.06 167.89 6 A SER 33 -146.31 18.20 6 A TYR 34 67.48 -55.42 6 A SER 50 -96.56 31.78 6 A ASP 67 -160.13 31.41 6 A PRO 70 -73.80 -76.67 6 A THR 83 -122.79 -161.08 6 A ASP 97 -84.74 -158.62 6 A PRO 119 -84.92 44.26 6 A LEU 120 44.36 87.35 6 A ASN 125 -144.56 45.32 6 A GLU 126 64.45 158.09 7 A MET 29 50.76 70.40 7 A LEU 32 63.65 154.99 7 A TYR 34 69.07 -52.83 7 A ASP 67 -166.93 31.75 7 A GLU 68 -170.54 29.67 7 A THR 83 -110.03 -168.68 7 A VAL 84 -98.36 38.36 7 A ASP 97 -83.85 -141.82 7 A GLN 115 -172.14 -177.82 7 A GLU 126 -39.35 126.97 8 A LEU 32 -167.39 58.27 8 A SER 50 -150.75 49.75 8 A ALA 52 -172.38 -44.59 8 A LYS 65 55.03 79.73 8 A ALA 66 -103.75 -74.13 8 A GLU 68 -171.78 145.08 8 A ASP 69 60.28 78.70 8 A VAL 84 -103.55 46.18 8 A ASP 97 -85.48 -148.87 9 A TYR 34 66.81 -56.87 9 A SER 50 -152.19 49.31 9 A ALA 52 -166.46 -39.82 9 A ASP 69 57.06 74.90 9 A VAL 84 -99.78 45.11 9 A ASP 97 -72.49 -163.11 9 A LYS 117 59.21 78.10 9 A GLU 126 65.75 154.05 10 A SER 27 -157.88 44.50 10 A MET 29 -150.35 71.24 10 A ALA 31 60.32 -176.73 10 A ALA 66 -106.65 41.50 10 A ASP 67 -168.55 43.44 10 A GLU 68 -163.92 34.13 10 A ASP 69 -171.01 94.80 10 A PRO 86 -82.10 -159.38 10 A PHE 98 66.34 108.42 10 A ASP 114 -149.75 35.89 10 A LYS 117 -165.36 87.29 10 A LEU 120 39.44 68.96 10 A ASP 121 -99.79 56.60 10 A GLU 126 -148.44 19.44 10 A GLN 128 62.34 -178.93 11 A SER 27 61.48 178.83 11 A GLN 30 61.22 178.29 11 A ALA 31 63.63 174.67 11 A LYS 65 58.83 81.23 11 A ALA 66 -119.33 -77.60 11 A GLU 68 -176.23 145.69 11 A ASP 69 54.98 79.22 11 A PRO 86 -77.43 -160.75 11 A ASP 97 -90.96 -156.67 11 A LYS 117 -165.84 101.85 12 A LEU 32 60.88 99.08 12 A SER 50 -104.63 42.13 12 A ASP 67 -167.08 39.03 12 A GLU 68 -172.43 -170.64 12 A ASP 69 57.03 95.03 12 A PRO 70 -78.00 -70.10 12 A VAL 84 -88.26 39.33 12 A ASP 97 -82.24 -155.01 12 A ILE 116 -94.53 -155.55 12 A LEU 120 43.56 77.65 12 A ASP 121 -96.16 51.44 12 A GLU 126 57.76 166.42 13 A LEU 32 -112.47 71.22 13 A TYR 34 66.86 -54.81 13 A ALA 66 -83.55 -92.38 13 A GLU 68 -152.70 28.64 13 A ASP 69 -166.91 86.51 13 A PRO 86 -74.87 -164.80 13 A ASP 97 -78.59 -162.19 13 A ILE 116 -107.71 -152.84 13 A LYS 117 60.06 80.07 13 A ASP 121 -118.84 55.71 13 A ASN 125 -141.64 28.73 13 A GLU 126 -148.64 17.47 14 A MET 29 -127.45 -58.75 14 A LEU 32 62.12 178.86 14 A TYR 34 69.27 -51.82 14 A SER 50 -97.32 30.79 14 A ALA 66 -108.58 -79.82 14 A ASP 69 58.56 82.81 14 A VAL 84 -83.30 36.88 14 A ASP 97 -81.71 -142.01 14 A PRO 119 -88.92 48.44 14 A LEU 120 50.10 79.52 14 A ASP 121 -110.17 51.27 15 A SER 27 53.73 -143.38 15 A GLU 51 48.18 -152.52 15 A LYS 65 56.06 72.69 15 A ASP 67 -175.66 41.30 15 A GLU 68 -170.63 41.59 15 A ASP 69 -161.38 92.76 15 A VAL 84 -88.17 43.94 15 A ASP 97 -87.87 -150.68 15 A ASP 114 -93.71 -67.56 15 A LEU 120 49.97 89.64 15 A GLU 126 55.93 106.29 Solution structure of the cathelin-like domain of protegrins (all amide bonds involving proline residues are in trans conformation) 1 N N A TYR 34 A TYR 9 HELX_P A SER 49 A SER 24 1 1 16 A PRO 92 A PRO 67 HELX_P A CYS 96 A CYS 71 5 2 5 disulf 2.016 A CYS 85 A SG CYS 60 1_555 A CYS 96 A SG CYS 71 1_555 disulf 2.022 A CYS 107 A SG CYS 82 1_555 A CYS 124 A SG CYS 99 1_555 ANTIBIOTIC cathelin-like domain, cathelicidin, proline isomerization, cystatin fold, ANTIBIOTIC PG4_PIG UNP 1 30 P49933 QALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVG TVTLDQIKDPLDITCNEVQGV 30 130 1N5P 30 130 P49933 A 1 5 105 1 cloning artifact GLY 26 1N5P A P49933 UNP 1 1 cloning artifact SER 27 1N5P A P49933 UNP 2 1 cloning artifact HIS 28 1N5P A P49933 UNP 3 1 cloning artifact MET 29 1N5P A P49933 UNP 4 4 anti-parallel anti-parallel anti-parallel A ASN 53 A ASN 28 A LEU 60 A LEU 35 A LYS 74 A LYS 49 A PRO 86 A PRO 61 A VAL 104 A VAL 79 A VAL 111 A VAL 86 A ILE 122 A ILE 97 A CYS 124 A CYS 99