0.023708
0.000000
0.003628
0.000000
0.009833
0.000000
0.000000
0.000000
0.018333
0.00000
0.00000
0.00000
Menez, R.
Bossus, M.
Muller, B.
Sibai, G.
Dalbon, P.
Ducancel, F.
Jolivet-Reynaud, C.
Stura, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90
98.7
90
42.18
101.7
55.18
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Immunol.
JOIMA3
0952
0022-1767
170
1917
1924
12574359
Crystal structure of a hydrophobic immunodominant
antigenic site on hepatitis C virus core protein
complexed to monoclonal antibody 19D9D6.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2001-03-30
MARRESEARCH
Sagitally Focused Si (111)
SINGLE WAVELENGTH
M
x-ray
1
1.009112
1.0
BM30A
ESRF
1.009112
SYNCHROTRON
ESRF BEAMLINE BM30A
24334.051
Fab 19D9D6 light chain
1
nat
polymer
23563.430
Fab 19D9D6 heavy chain
1
man
polymer
1640.929
Genome polyprotein Capsid protein C
3.4.22.-, 3.4.21.98, 2.7.7.48
1
syn
polymer
18.015
water
202
nat
water
HCV core 13-40 peptide, Core protein, P22
no
no
DIVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGRGSGTDFTLT
ISSVQAEDQAVYYCKQAYIPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DIVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGRGSGTDFTLT
ISSVQAEDQAVYYCKQAYIPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
QIQLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAY
LQINSLKNEDTATYFCARFLLRQYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
QIQLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAY
LQINSLKNEDTATYFCARFLLRQYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
H
polypeptide(L)
no
no
PGGGQIVGGVYLLPRR
PGGGQIVGGVYLLPRR
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
10090
Mus musculus
mouse
sample
10090
Mus musculus
1
2.36
47.89
VAPOR DIFFUSION, SITTING DROP
9.0
10% MPEG 5000, 250mM NaCl, 50mM Tris-Hcl, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
repository
Initial release
Version format compliance
Version format compliance
Source and taxonomy
1
0
2003-02-25
1
1
2008-04-28
1
2
2011-07-13
1
3
2013-09-18
RCSB
Y
RCSB
2002-11-08
REL
HOH
water
SEQUENCE FROM HEPATITIS C VIRUS CORE PROTEIN
sample
HOH
3
4
HOH
HOH
215
L
HOH
4
4
HOH
HOH
216
L
HOH
5
4
HOH
HOH
217
L
HOH
11
4
HOH
HOH
218
L
HOH
12
4
HOH
HOH
219
L
HOH
13
4
HOH
HOH
220
L
HOH
14
4
HOH
HOH
221
L
HOH
17
4
HOH
HOH
222
L
HOH
20
4
HOH
HOH
223
L
HOH
21
4
HOH
HOH
224
L
HOH
22
4
HOH
HOH
225
L
HOH
25
4
HOH
HOH
226
L
HOH
26
4
HOH
HOH
227
L
HOH
28
4
HOH
HOH
228
L
HOH
30
4
HOH
HOH
229
L
HOH
31
4
HOH
HOH
230
L
HOH
32
4
HOH
HOH
231
L
HOH
34
4
HOH
HOH
232
L
HOH
35
4
HOH
HOH
233
L
HOH
37
4
HOH
HOH
234
L
HOH
40
4
HOH
HOH
235
L
HOH
41
4
HOH
HOH
236
L
HOH
42
4
HOH
HOH
237
L
HOH
46
4
HOH
HOH
238
L
HOH
50
4
HOH
HOH
239
L
HOH
51
4
HOH
HOH
240
L
HOH
53
4
HOH
HOH
241
L
HOH
55
4
HOH
HOH
242
L
HOH
57
4
HOH
HOH
243
L
HOH
58
4
HOH
HOH
244
L
HOH
61
4
HOH
HOH
245
L
HOH
63
4
HOH
HOH
246
L
HOH
64
4
HOH
HOH
247
L
HOH
73
4
HOH
HOH
248
L
HOH
74
4
HOH
HOH
249
L
HOH
76
4
HOH
HOH
250
L
HOH
77
4
HOH
HOH
251
L
HOH
79
4
HOH
HOH
252
L
HOH
87
4
HOH
HOH
253
L
HOH
88
4
HOH
HOH
254
L
HOH
89
4
HOH
HOH
255
L
HOH
90
4
HOH
HOH
256
L
HOH
92
4
HOH
HOH
257
L
HOH
93
4
HOH
HOH
258
L
HOH
95
4
HOH
HOH
259
L
HOH
97
4
HOH
HOH
260
L
HOH
100
4
HOH
HOH
261
L
HOH
101
4
HOH
HOH
262
L
HOH
102
4
HOH
HOH
263
L
HOH
103
4
HOH
HOH
264
L
HOH
106
4
HOH
HOH
265
L
HOH
107
4
HOH
HOH
266
L
HOH
112
4
HOH
HOH
267
L
HOH
113
4
HOH
HOH
268
L
HOH
118
4
HOH
HOH
269
L
HOH
120
4
HOH
HOH
270
L
HOH
121
4
HOH
HOH
271
L
HOH
124
4
HOH
HOH
272
L
HOH
127
4
HOH
HOH
273
L
HOH
131
4
HOH
HOH
274
L
HOH
134
4
HOH
HOH
275
L
HOH
135
4
HOH
HOH
276
L
HOH
136
4
HOH
HOH
277
L
HOH
137
4
HOH
HOH
278
L
HOH
139
4
HOH
HOH
279
L
HOH
141
4
HOH
HOH
280
L
HOH
143
4
HOH
HOH
281
L
HOH
144
4
HOH
HOH
282
L
HOH
145
4
HOH
HOH
283
L
HOH
146
4
HOH
HOH
284
L
HOH
147
4
HOH
HOH
285
L
HOH
149
4
HOH
HOH
286
L
HOH
150
4
HOH
HOH
287
L
HOH
151
4
HOH
HOH
288
L
HOH
152
4
HOH
HOH
289
L
HOH
153
4
HOH
HOH
290
L
HOH
158
4
HOH
HOH
291
L
HOH
160
4
HOH
HOH
292
L
HOH
161
4
HOH
HOH
293
L
HOH
168
4
HOH
HOH
294
L
HOH
169
4
HOH
HOH
295
L
HOH
170
4
HOH
HOH
296
L
HOH
171
4
HOH
HOH
297
L
HOH
172
4
HOH
HOH
298
L
HOH
173
4
HOH
HOH
299
L
HOH
174
4
HOH
HOH
300
L
HOH
175
4
HOH
HOH
301
L
HOH
176
4
HOH
HOH
302
L
HOH
179
4
HOH
HOH
303
L
HOH
180
4
HOH
HOH
304
L
HOH
181
4
HOH
HOH
305
L
HOH
185
4
HOH
HOH
306
L
HOH
190
4
HOH
HOH
307
L
HOH
193
4
HOH
HOH
308
L
HOH
195
4
HOH
HOH
309
L
HOH
196
4
HOH
HOH
310
L
HOH
199
4
HOH
HOH
311
L
HOH
200
4
HOH
HOH
312
L
HOH
1
4
HOH
HOH
214
H
HOH
2
4
HOH
HOH
215
H
HOH
6
4
HOH
HOH
216
H
HOH
7
4
HOH
HOH
217
H
HOH
8
4
HOH
HOH
218
H
HOH
9
4
HOH
HOH
219
H
HOH
10
4
HOH
HOH
220
H
HOH
15
4
HOH
HOH
221
H
HOH
16
4
HOH
HOH
222
H
HOH
18
4
HOH
HOH
223
H
HOH
19
4
HOH
HOH
224
H
HOH
23
4
HOH
HOH
225
H
HOH
24
4
HOH
HOH
226
H
HOH
27
4
HOH
HOH
227
H
HOH
29
4
HOH
HOH
228
H
HOH
33
4
HOH
HOH
229
H
HOH
36
4
HOH
HOH
230
H
HOH
38
4
HOH
HOH
231
H
HOH
39
4
HOH
HOH
232
H
HOH
43
4
HOH
HOH
233
H
HOH
44
4
HOH
HOH
234
H
HOH
45
4
HOH
HOH
235
H
HOH
47
4
HOH
HOH
236
H
HOH
48
4
HOH
HOH
237
H
HOH
49
4
HOH
HOH
238
H
HOH
52
4
HOH
HOH
239
H
HOH
54
4
HOH
HOH
240
H
HOH
56
4
HOH
HOH
241
H
HOH
59
4
HOH
HOH
242
H
HOH
60
4
HOH
HOH
243
H
HOH
62
4
HOH
HOH
244
H
HOH
65
4
HOH
HOH
245
H
HOH
66
4
HOH
HOH
246
H
HOH
67
4
HOH
HOH
247
H
HOH
68
4
HOH
HOH
248
H
HOH
69
4
HOH
HOH
249
H
HOH
70
4
HOH
HOH
250
H
HOH
71
4
HOH
HOH
251
H
HOH
75
4
HOH
HOH
252
H
HOH
78
4
HOH
HOH
253
H
HOH
81
4
HOH
HOH
254
H
HOH
82
4
HOH
HOH
255
H
HOH
83
4
HOH
HOH
256
H
HOH
84
4
HOH
HOH
257
H
HOH
85
4
HOH
HOH
258
H
HOH
86
4
HOH
HOH
259
H
HOH
91
4
HOH
HOH
260
H
HOH
94
4
HOH
HOH
261
H
HOH
96
4
HOH
HOH
262
H
HOH
98
4
HOH
HOH
263
H
HOH
99
4
HOH
HOH
264
H
HOH
104
4
HOH
HOH
265
H
HOH
105
4
HOH
HOH
266
H
HOH
108
4
HOH
HOH
267
H
HOH
109
4
HOH
HOH
268
H
HOH
110
4
HOH
HOH
269
H
HOH
111
4
HOH
HOH
270
H
HOH
114
4
HOH
HOH
271
H
HOH
115
4
HOH
HOH
272
H
HOH
116
4
HOH
HOH
273
H
HOH
117
4
HOH
HOH
274
H
HOH
119
4
HOH
HOH
275
H
HOH
122
4
HOH
HOH
276
H
HOH
123
4
HOH
HOH
277
H
HOH
125
4
HOH
HOH
278
H
HOH
126
4
HOH
HOH
279
H
HOH
128
4
HOH
HOH
280
H
HOH
129
4
HOH
HOH
281
H
HOH
132
4
HOH
HOH
282
H
HOH
133
4
HOH
HOH
283
H
HOH
138
4
HOH
HOH
284
H
HOH
140
4
HOH
HOH
285
H
HOH
142
4
HOH
HOH
286
H
HOH
155
4
HOH
HOH
287
H
HOH
156
4
HOH
HOH
288
H
HOH
157
4
HOH
HOH
289
H
HOH
159
4
HOH
HOH
290
H
HOH
162
4
HOH
HOH
291
H
HOH
163
4
HOH
HOH
292
H
HOH
164
4
HOH
HOH
293
H
HOH
165
4
HOH
HOH
294
H
HOH
166
4
HOH
HOH
295
H
HOH
167
4
HOH
HOH
296
H
HOH
177
4
HOH
HOH
297
H
HOH
178
4
HOH
HOH
298
H
HOH
182
4
HOH
HOH
299
H
HOH
183
4
HOH
HOH
300
H
HOH
184
4
HOH
HOH
301
H
HOH
186
4
HOH
HOH
302
H
HOH
187
4
HOH
HOH
303
H
HOH
188
4
HOH
HOH
304
H
HOH
189
4
HOH
HOH
305
H
HOH
191
4
HOH
HOH
306
H
HOH
192
4
HOH
HOH
307
H
HOH
197
4
HOH
HOH
308
H
HOH
198
4
HOH
HOH
309
H
HOH
201
4
HOH
HOH
310
H
HOH
202
4
HOH
HOH
311
H
HOH
72
4
HOH
HOH
72
P
HOH
80
4
HOH
HOH
80
P
HOH
130
4
HOH
HOH
130
P
HOH
148
4
HOH
HOH
148
P
HOH
154
4
HOH
HOH
154
P
HOH
194
4
HOH
HOH
194
P
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
SER
5
n
5
SER
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
ALA
12
n
12
ALA
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
ALA
15
n
15
ALA
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
LYS
18
n
18
LYS
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
MET
21
n
21
MET
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
LYS
24
n
24
LYS
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
27
n
28
A
SER
27
L
LEU
27
n
29
B
LEU
27
L
LEU
27
n
30
C
LEU
27
L
ASN
27
n
31
D
ASN
27
L
SER
27
n
32
E
SER
27
L
ARG
27
n
33
F
ARG
27
L
THR
28
n
34
THR
28
L
ARG
29
n
35
ARG
29
L
LYS
30
n
36
LYS
30
L
ASN
31
n
37
ASN
31
L
TYR
32
n
38
TYR
32
L
LEU
33
n
39
LEU
33
L
ALA
34
n
40
ALA
34
L
TRP
35
n
41
TRP
35
L
TYR
36
n
42
TYR
36
L
GLN
37
n
43
GLN
37
L
GLN
38
n
44
GLN
38
L
LYS
39
n
45
LYS
39
L
PRO
40
n
46
PRO
40
L
GLY
41
n
47
GLY
41
L
GLN
42
n
48
GLN
42
L
SER
43
n
49
SER
43
L
PRO
44
n
50
PRO
44
L
LYS
45
n
51
LYS
45
L
VAL
46
n
52
VAL
46
L
LEU
47
n
53
LEU
47
L
ILE
48
n
54
ILE
48
L
TYR
49
n
55
TYR
49
L
TRP
50
n
56
TRP
50
L
ALA
51
n
57
ALA
51
L
SER
52
n
58
SER
52
L
THR
53
n
59
THR
53
L
ARG
54
n
60
ARG
54
L
GLU
55
n
61
GLU
55
L
SER
56
n
62
SER
56
L
GLY
57
n
63
GLY
57
L
VAL
58
n
64
VAL
58
L
PRO
59
n
65
PRO
59
L
ASP
60
n
66
ASP
60
L
ARG
61
n
67
ARG
61
L
PHE
62
n
68
PHE
62
L
THR
63
n
69
THR
63
L
GLY
64
n
70
GLY
64
L
ARG
65
n
71
ARG
65
L
GLY
66
n
72
GLY
66
L
SER
67
n
73
SER
67
L
GLY
68
n
74
GLY
68
L
THR
69
n
75
THR
69
L
ASP
70
n
76
ASP
70
L
PHE
71
n
77
PHE
71
L
THR
72
n
78
THR
72
L
LEU
73
n
79
LEU
73
L
THR
74
n
80
THR
74
L
ILE
75
n
81
ILE
75
L
SER
76
n
82
SER
76
L
SER
77
n
83
SER
77
L
VAL
78
n
84
VAL
78
L
GLN
79
n
85
GLN
79
L
ALA
80
n
86
ALA
80
L
GLU
81
n
87
GLU
81
L
ASP
82
n
88
ASP
82
L
GLN
83
n
89
GLN
83
L
ALA
84
n
90
ALA
84
L
VAL
85
n
91
VAL
85
L
TYR
86
n
92
TYR
86
L
TYR
87
n
93
TYR
87
L
CYS
88
n
94
CYS
88
L
LYS
89
n
95
LYS
89
L
GLN
90
n
96
GLN
90
L
ALA
91
n
97
ALA
91
L
TYR
92
n
98
TYR
92
L
ILE
93
n
99
ILE
93
L
PRO
94
n
100
PRO
94
L
PRO
95
n
101
PRO
95
L
LEU
96
n
102
LEU
96
L
THR
97
n
103
THR
97
L
PHE
98
n
104
PHE
98
L
GLY
99
n
105
GLY
99
L
ALA
100
n
106
ALA
100
L
GLY
101
n
107
GLY
101
L
THR
102
n
108
THR
102
L
LYS
103
n
109
LYS
103
L
LEU
104
n
110
LEU
104
L
GLU
105
n
111
GLU
105
L
LEU
106
n
112
LEU
106
L
LYS
107
n
113
LYS
107
L
ARG
108
n
114
ARG
108
L
ALA
109
n
115
ALA
109
L
ASP
110
n
116
ASP
110
L
ALA
111
n
117
ALA
111
L
ALA
112
n
118
ALA
112
L
PRO
113
n
119
PRO
113
L
THR
114
n
120
THR
114
L
VAL
115
n
121
VAL
115
L
SER
116
n
122
SER
116
L
ILE
117
n
123
ILE
117
L
PHE
118
n
124
PHE
118
L
PRO
119
n
125
PRO
119
L
PRO
120
n
126
PRO
120
L
SER
121
n
127
SER
121
L
SER
122
n
128
SER
122
L
GLU
123
n
129
GLU
123
L
GLN
124
n
130
GLN
124
L
LEU
125
n
131
LEU
125
L
THR
126
n
132
THR
126
L
SER
127
n
133
SER
127
L
GLY
128
n
134
GLY
128
L
GLY
129
n
135
GLY
129
L
ALA
130
n
136
ALA
130
L
SER
131
n
137
SER
131
L
VAL
132
n
138
VAL
132
L
VAL
133
n
139
VAL
133
L
CYS
134
n
140
CYS
134
L
PHE
135
n
141
PHE
135
L
LEU
136
n
142
LEU
136
L
ASN
137
n
143
ASN
137
L
ASN
138
n
144
ASN
138
L
PHE
139
n
145
PHE
139
L
TYR
140
n
146
TYR
140
L
PRO
141
n
147
PRO
141
L
LYS
142
n
148
LYS
142
L
ASP
143
n
149
ASP
143
L
ILE
144
n
150
ILE
144
L
ASN
145
n
151
ASN
145
L
VAL
146
n
152
VAL
146
L
LYS
147
n
153
LYS
147
L
TRP
148
n
154
TRP
148
L
LYS
149
n
155
LYS
149
L
ILE
150
n
156
ILE
150
L
ASP
151
n
157
ASP
151
L
GLY
152
n
158
GLY
152
L
SER
153
n
159
SER
153
L
GLU
154
n
160
GLU
154
L
ARG
155
n
161
ARG
155
L
GLN
156
n
162
GLN
156
L
ASN
157
n
163
ASN
157
L
GLY
158
n
164
GLY
158
L
VAL
159
n
165
VAL
159
L
LEU
160
n
166
LEU
160
L
ASN
161
n
167
ASN
161
L
SER
162
n
168
SER
162
L
TRP
163
n
169
TRP
163
L
THR
164
n
170
THR
164
L
ASP
165
n
171
ASP
165
L
GLN
166
n
172
GLN
166
L
ASP
167
n
173
ASP
167
L
SER
168
n
174
SER
168
L
LYS
169
n
175
LYS
169
L
ASP
170
n
176
ASP
170
L
SER
171
n
177
SER
171
L
THR
172
n
178
THR
172
L
TYR
173
n
179
TYR
173
L
SER
174
n
180
SER
174
L
MET
175
n
181
MET
175
L
SER
176
n
182
SER
176
L
SER
177
n
183
SER
177
L
THR
178
n
184
THR
178
L
LEU
179
n
185
LEU
179
L
THR
180
n
186
THR
180
L
LEU
181
n
187
LEU
181
L
THR
182
n
188
THR
182
L
LYS
183
n
189
LYS
183
L
ASP
184
n
190
ASP
184
L
GLU
185
n
191
GLU
185
L
TYR
186
n
192
TYR
186
L
GLU
187
n
193
GLU
187
L
ARG
188
n
194
ARG
188
L
HIS
189
n
195
HIS
189
L
ASN
190
n
196
ASN
190
L
SER
191
n
197
SER
191
L
TYR
192
n
198
TYR
192
L
THR
193
n
199
THR
193
L
CYS
194
n
200
CYS
194
L
GLU
195
n
201
GLU
195
L
ALA
196
n
202
ALA
196
L
THR
197
n
203
THR
197
L
HIS
198
n
204
HIS
198
L
LYS
199
n
205
LYS
199
L
THR
200
n
206
THR
200
L
SER
201
n
207
SER
201
L
THR
202
n
208
THR
202
L
SER
203
n
209
SER
203
L
PRO
204
n
210
PRO
204
L
ILE
205
n
211
ILE
205
L
VAL
206
n
212
VAL
206
L
LYS
207
n
213
LYS
207
L
SER
208
n
214
SER
208
L
PHE
209
n
215
PHE
209
L
ASN
210
n
216
ASN
210
L
ARG
211
n
217
ARG
211
L
ASN
212
n
218
ASN
212
L
GLU
213
n
219
GLU
213
L
CYS
214
n
220
CYS
214
L
GLN
1
n
1
GLN
1
H
ILE
2
n
2
ILE
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLU
16
n
16
GLU
16
H
THR
17
n
17
THR
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
ASP
31
n
31
ASP
31
H
PHE
32
n
32
PHE
32
H
SER
33
n
33
SER
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ASN
38
n
38
ASN
38
H
GLN
39
n
39
GLN
39
H
ALA
40
n
40
ALA
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
ASN
46
n
46
ASN
46
H
TRP
47
n
47
TRP
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
TRP
50
n
50
TRP
50
H
VAL
51
n
51
VAL
51
H
ASN
52
n
52
ASN
52
H
THR
52
n
53
A
THR
52
H
GLU
53
n
54
GLU
53
H
THR
54
n
55
THR
54
H
GLY
55
n
56
GLY
55
H
GLU
56
n
57
GLU
56
H
PRO
57
n
58
PRO
57
H
THR
58
n
59
THR
58
H
TYR
59
n
60
TYR
59
H
ALA
60
n
61
ALA
60
H
ASP
61
n
62
ASP
61
H
ASP
62
n
63
ASP
62
H
PHE
63
n
64
PHE
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
PHE
67
n
68
PHE
67
H
ALA
68
n
69
ALA
68
H
PHE
69
n
70
PHE
69
H
SER
70
n
71
SER
70
H
LEU
71
n
72
LEU
71
H
GLU
72
n
73
GLU
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
ALA
75
n
76
ALA
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
ILE
82
n
83
ILE
82
H
ASN
82
n
84
A
ASN
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
ASN
84
n
88
ASN
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
THR
89
n
93
THR
89
H
TYR
90
n
94
TYR
90
H
PHE
91
n
95
PHE
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
PHE
95
n
99
PHE
95
H
LEU
96
n
100
LEU
96
H
LEU
97
n
101
LEU
97
H
ARG
98
n
102
ARG
98
H
GLN
99
n
103
GLN
99
H
TYR
100
n
104
TYR
100
H
PHE
100
n
105
A
PHE
100
H
ASP
101
n
106
ASP
101
H
VAL
102
n
107
VAL
102
H
TRP
103
n
108
TRP
103
H
GLY
104
n
109
GLY
104
H
ALA
105
n
110
ALA
105
H
GLY
106
n
111
GLY
106
H
THR
107
n
112
THR
107
H
THR
108
n
113
THR
108
H
VAL
109
n
114
VAL
109
H
THR
110
n
115
THR
110
H
VAL
111
n
116
VAL
111
H
SER
112
n
117
SER
112
H
SER
113
n
118
SER
113
H
ALA
114
n
119
ALA
114
H
LYS
115
n
120
LYS
115
H
THR
116
n
121
THR
116
H
THR
117
n
122
THR
117
H
PRO
118
n
123
PRO
118
H
PRO
119
n
124
PRO
119
H
SER
120
n
125
SER
120
H
VAL
121
n
126
VAL
121
H
TYR
122
n
127
TYR
122
H
PRO
123
n
128
PRO
123
H
LEU
124
n
129
LEU
124
H
ALA
125
n
130
ALA
125
H
PRO
126
n
131
PRO
126
H
GLY
127
n
132
GLY
127
H
SER
128
n
133
SER
128
H
ALA
129
n
134
ALA
129
H
ALA
130
n
135
ALA
130
H
GLN
131
n
136
GLN
131
H
THR
132
n
137
THR
132
H
ASN
133
n
138
ASN
133
H
SER
134
n
139
SER
134
H
MET
135
n
140
MET
135
H
VAL
136
n
141
VAL
136
H
THR
137
n
142
THR
137
H
LEU
138
n
143
LEU
138
H
GLY
139
n
144
GLY
139
H
CYS
140
n
145
CYS
140
H
LEU
141
n
146
LEU
141
H
VAL
142
n
147
VAL
142
H
LYS
143
n
148
LYS
143
H
GLY
144
n
149
GLY
144
H
TYR
145
n
150
TYR
145
H
PHE
146
n
151
PHE
146
H
PRO
147
n
152
PRO
147
H
GLU
148
n
153
GLU
148
H
PRO
149
n
154
PRO
149
H
VAL
150
n
155
VAL
150
H
THR
151
n
156
THR
151
H
VAL
152
n
157
VAL
152
H
THR
153
n
158
THR
153
H
TRP
154
n
159
TRP
154
H
ASN
155
n
160
ASN
155
H
SER
156
n
161
SER
156
H
GLY
157
n
162
GLY
157
H
SER
158
n
163
SER
158
H
LEU
159
n
164
LEU
159
H
SER
160
n
165
SER
160
H
SER
161
n
166
SER
161
H
GLY
162
n
167
GLY
162
H
VAL
163
n
168
VAL
163
H
HIS
164
n
169
HIS
164
H
THR
165
n
170
THR
165
H
PHE
166
n
171
PHE
166
H
PRO
167
n
172
PRO
167
H
ALA
168
n
173
ALA
168
H
VAL
169
n
174
VAL
169
H
LEU
170
n
175
LEU
170
H
GLN
171
n
176
GLN
171
H
SER
172
n
177
SER
172
H
ASP
173
n
178
ASP
173
H
LEU
174
n
179
LEU
174
H
TYR
175
n
180
TYR
175
H
THR
176
n
181
THR
176
H
LEU
177
n
182
LEU
177
H
SER
178
n
183
SER
178
H
SER
179
n
184
SER
179
H
SER
180
n
185
SER
180
H
VAL
181
n
186
VAL
181
H
THR
182
n
187
THR
182
H
VAL
183
n
188
VAL
183
H
PRO
184
n
189
PRO
184
H
SER
185
n
190
SER
185
H
SER
186
n
191
SER
186
H
THR
187
n
192
THR
187
H
TRP
188
n
193
TRP
188
H
PRO
189
n
194
PRO
189
H
SER
190
n
195
SER
190
H
GLU
191
n
196
GLU
191
H
THR
192
n
197
THR
192
H
VAL
193
n
198
VAL
193
H
THR
194
n
199
THR
194
H
CYS
195
n
200
CYS
195
H
ASN
196
n
201
ASN
196
H
VAL
197
n
202
VAL
197
H
ALA
198
n
203
ALA
198
H
HIS
199
n
204
HIS
199
H
PRO
200
n
205
PRO
200
H
ALA
201
n
206
ALA
201
H
SER
202
n
207
SER
202
H
SER
203
n
208
SER
203
H
THR
204
n
209
THR
204
H
LYS
205
n
210
LYS
205
H
VAL
206
n
211
VAL
206
H
ASP
207
n
212
ASP
207
H
LYS
208
n
213
LYS
208
H
LYS
209
n
214
LYS
209
H
ILE
210
n
215
ILE
210
H
VAL
211
n
216
VAL
211
H
PRO
212
n
217
PRO
212
H
ARG
213
n
218
ARG
213
H
PRO
25
n
1
PRO
25
P
GLY
26
n
2
GLY
26
P
GLY
27
n
3
GLY
27
P
GLY
28
n
4
GLY
28
P
GLN
29
n
5
GLN
29
P
ILE
30
n
6
ILE
30
P
VAL
31
n
7
VAL
31
P
GLY
32
n
8
GLY
32
P
GLY
33
n
9
GLY
33
P
VAL
34
n
10
VAL
34
P
TYR
35
n
11
TYR
35
P
LEU
36
n
12
LEU
36
P
LEU
37
n
13
LEU
37
P
PRO
38
n
14
PRO
38
P
ARG
39
n
15
ARG
39
P
ARG
40
n
16
ARG
40
P
author_and_software_defined_assembly
PISA
3
trimeric
4820
-36
20680
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
SER
5
A
N
SER
5
L
O
LYS
24
A
O
LYS
24
L
N
VAL
19
A
N
VAL
19
L
O
ILE
75
A
O
ILE
81
L
O
THR
74
A
O
THR
80
L
N
THR
63
A
N
THR
69
L
N
LEU
11
A
N
LEU
11
L
O
GLU
105
A
O
GLU
111
L
O
LEU
104
A
O
LEU
110
L
N
ALA
84
A
N
ALA
90
L
O
TYR
87
A
O
TYR
93
L
N
TYR
36
A
N
TYR
42
L
N
GLN
37
A
N
GLN
43
L
O
LYS
45
A
O
LYS
51
L
N
TYR
49
A
N
TYR
55
L
O
THR
53
A
O
THR
59
L
N
LEU
11
A
N
LEU
11
L
O
GLU
105
A
O
GLU
111
L
O
LEU
104
A
O
LEU
110
L
N
ALA
84
A
N
ALA
90
L
N
GLN
90
A
N
GLN
96
L
O
THR
97
A
O
THR
103
L
N
PHE
118
A
N
PHE
124
L
O
VAL
133
A
O
VAL
139
L
N
VAL
132
A
N
VAL
138
L
O
LEU
179
A
O
LEU
185
L
O
THR
178
A
O
THR
184
L
N
LEU
160
A
N
LEU
166
L
O
SER
153
A
O
SER
159
L
N
ILE
150
A
N
ILE
156
L
N
LYS
147
A
N
LYS
153
L
O
GLU
195
A
O
GLU
201
L
N
ALA
196
A
N
ALA
202
L
O
ILE
205
A
O
ILE
211
H
N
GLN
3
B
N
GLN
3
H
O
SER
25
B
O
SER
25
H
N
ILE
20
B
N
ILE
20
H
O
LEU
80
B
O
LEU
81
H
O
TYR
79
B
O
TYR
80
H
N
SER
70
B
N
SER
71
H
N
GLU
10
B
N
GLU
10
H
O
THR
110
B
O
THR
115
H
O
THR
58
B
O
THR
59
H
N
TRP
50
B
N
TRP
50
H
O
MET
48
B
O
MET
48
H
N
TRP
36
B
N
TRP
36
H
N
VAL
37
B
N
VAL
37
H
O
PHE
91
B
O
PHE
95
H
N
LEU
124
B
N
LEU
129
H
O
GLY
139
B
O
GLY
144
H
N
VAL
142
B
N
VAL
147
H
O
LEU
177
B
O
LEU
182
H
O
SER
180
B
O
SER
185
H
N
HIS
164
B
N
HIS
169
H
N
LEU
124
B
N
LEU
129
H
O
GLY
139
B
O
GLY
144
H
N
VAL
142
B
N
VAL
147
H
O
LEU
177
B
O
LEU
182
H
O
THR
176
B
O
THR
181
H
N
VAL
169
B
N
VAL
174
H
N
THR
153
B
N
THR
158
H
O
ASN
196
B
O
ASN
201
H
N
CYS
195
B
N
CYS
200
H
O
LYS
208
B
O
LYS
213
1
H
H
O
O
THR
THR
89
107
2.15
1
L
ALA
51
75.02
-36.49
1
L
SER
52
-142.51
25.52
1
L
ALA
84
171.93
179.54
1
L
TYR
140
-170.20
135.22
1
L
HIS
198
-111.98
-123.64
1
L
LYS
199
-139.51
-30.06
1
L
THR
200
-66.59
3.56
1
L
SER
201
-170.62
138.18
1
L
ASN
212
-70.76
-70.65
1
H
ASN
84
-68.15
43.55
1
H
GLU
85
-145.33
-19.88
1
H
TYR
90
64.24
95.11
1
H
PHE
146
-108.49
-85.90
1
H
PRO
147
-36.69
124.92
1
H
PRO
149
-41.05
104.15
36.44
0.245
0.19
0.216
0.268
2.34
20.0
724
17893
14779
92.2
RANDOM
1
ISOTROPIC
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRIES 1UCB; 1DBA; 1HIL
Engh & Huber
2.34
20.0
202
3686
0
0
3484
0.0065
1.40
2.34
20.0
1N64
19408
19303
2.0
0.0
0.071
0.067
1
9.2
3
98.9
2.34
2.39
1.5
1179
0.233
1
1.7
91.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
Fab 19D9D6 light chain , Fab 19D9D6 heavy chain, Genome polyprotein Capsid protein C
Crystal structure analysis of the immunodominant antigenic site on Hepatitis C virus protein bound to mAb 19D9D6
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
L
GLN
79
A
GLN
85
HELX_P
L
GLN
83
A
GLN
89
5
1
5
L
SER
121
A
SER
127
HELX_P
L
SER
127
A
SER
133
1
2
7
L
LYS
183
A
LYS
189
HELX_P
L
ARG
188
A
ARG
194
1
3
6
H
THR
28
B
THR
28
HELX_P
H
PHE
32
B
PHE
32
5
4
5
H
ASP
61
B
ASP
62
HELX_P
H
LYS
64
B
LYS
65
5
5
4
H
THR
73
B
THR
74
HELX_P
H
ALA
75
B
ALA
76
5
6
3
H
SER
156
B
SER
161
HELX_P
H
SER
158
B
SER
163
5
7
3
H
SER
186
B
SER
191
HELX_P
H
TRP
188
B
TRP
193
5
8
3
H
PRO
200
B
PRO
205
HELX_P
H
SER
203
B
SER
208
5
9
4
P
GLY
32
C
GLY
8
HELX_P
P
LEU
36
C
LEU
12
5
10
5
disulf
2.049
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
94
1_555
disulf
2.039
L
CYS
134
A
SG
CYS
140
1_555
L
CYS
194
A
SG
CYS
200
1_555
disulf
2.039
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.035
H
CYS
140
B
SG
CYS
145
1_555
H
CYS
195
B
SG
CYS
200
1_555
IMMUNE SYSTEM
ANTIBODY PEPTIDE COMPLEX, IMMUNE SYSTEM
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.30
L
PRO
94
A
PRO
100
1
L
PRO
95
A
PRO
101
0.05
L
TYR
140
A
TYR
146
1
L
PRO
141
A
PRO
147
0.42
H
TRP
188
B
TRP
193
1
H
PRO
189
B
PRO
194
0.42
POLG_HCVTW
UNP
3
25
P29846
PGGGQIVGGVYLLPRR
1N64
PDB
1
1N64
1N64
PDB
2
1N64
25
40
1N64
25
40
P29846
P
1
1
16
1
214
1N64
1
214
1N64
L
2
1
220
1
213
1N64
1
213
1N64
H
3
1
218
4
6
4
2
4
4
4
2
5
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
SER
7
A
SER
7
L
VAL
19
A
VAL
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
76
L
ILE
75
A
ILE
81
L
PHE
62
A
PHE
68
L
SER
67
A
SER
73
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
108
L
LYS
107
A
LYS
113
L
ALA
84
A
ALA
90
L
GLN
90
A
GLN
96
L
LEU
33
A
LEU
39
L
GLN
38
A
GLN
44
L
LYS
45
A
LYS
51
L
TYR
49
A
TYR
55
L
THR
53
A
THR
59
L
ARG
54
A
ARG
60
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
108
L
LYS
107
A
LYS
113
L
ALA
84
A
ALA
90
L
GLN
90
A
GLN
96
L
THR
97
A
THR
103
L
PHE
98
A
PHE
104
L
LYS
30
A
LYS
36
L
ASN
31
A
ASN
37
L
THR
114
A
THR
120
L
PHE
118
A
PHE
124
L
GLY
129
A
GLY
135
L
PHE
139
A
PHE
145
L
TYR
173
A
TYR
179
L
THR
182
A
THR
188
L
VAL
159
A
VAL
165
L
TRP
163
A
TRP
169
L
SER
153
A
SER
159
L
ARG
155
A
ARG
161
L
ASN
145
A
ASN
151
L
ILE
150
A
ILE
156
L
SER
191
A
SER
197
L
THR
197
A
THR
203
L
ILE
205
A
ILE
211
L
ASN
210
A
ASN
216
H
GLN
3
B
GLN
3
H
GLN
6
B
GLN
6
H
VAL
18
B
VAL
18
H
SER
25
B
SER
25
H
THR
77
B
THR
78
H
ILE
82
B
ILE
83
H
PHE
67
B
PHE
68
H
GLU
72
B
GLU
73
H
GLU
10
B
GLU
10
H
LYS
12
B
LYS
12
H
VAL
109
B
VAL
114
H
VAL
111
B
VAL
116
H
PRO
57
B
PRO
58
H
TYR
59
B
TYR
60
H
LEU
45
B
LEU
45
H
VAL
51
B
VAL
51
H
MET
34
B
MET
34
H
GLN
39
B
GLN
39
H
PHE
91
B
PHE
95
H
PHE
95
B
PHE
99
H
SER
120
B
SER
125
H
LEU
124
B
LEU
129
H
MET
135
B
MET
140
H
TYR
145
B
TYR
150
H
LEU
174
B
LEU
179
H
PRO
184
B
PRO
189
H
VAL
163
B
VAL
168
H
THR
165
B
THR
170
H
SER
120
B
SER
125
H
LEU
124
B
LEU
129
H
MET
135
B
MET
140
H
TYR
145
B
TYR
150
H
LEU
174
B
LEU
179
H
PRO
184
B
PRO
189
H
VAL
169
B
VAL
174
H
GLN
171
B
GLN
176
H
THR
151
B
THR
156
H
TRP
154
B
TRP
159
H
THR
194
B
THR
199
H
HIS
199
B
HIS
204
H
THR
204
B
THR
209
H
LYS
209
B
LYS
214
4
P 1 21 1