0.027972 0.000000 0.000000 0.000000 0.015576 0.000000 0.000000 0.000000 0.015184 0.00000 0.00000 0.00000 Zhu, G. Liu, J. Terzyan, S. Zhai, P. Li, G. Zhang, X.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 35.750 64.200 65.860 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 278 2452 2460 10.1074/jbc.M211042200 12433916 High Resolution Crystal Structures of Human Rab5a and Five Mutants with Substitutions in the Catalytically Important Phosphate-Binding Loop 2003 10.2210/pdb1n6l/pdb pdb_00001n6l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2002-08-23 MARRESEARCH OSMIC OPTICS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 19013.609 Ras-related protein Rab-5A GTPASE DOMAIN A30P 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 523.180 GUANOSINE-5'-TRIPHOSPHATE 1 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 18.015 water 254 nat water rab5a no no GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF MAIAKKLPKN GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF MAIAKKLPKN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pET11a 1 2 37.5 VAPOR DIFFUSION, HANGING DROP 6.0 PEG 6000, sodium chloride, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-11-27 1 1 2008-04-28 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id rab5a wild type rab5a A30P mutant complex with GDP rab5a A30P mutant complex with GDP and aluminum fluoride Rab5a A30R mutant complex with GppNHp Rab5a A30K mutant complex with GppNHp Rab5a A30E mutant complex with GppNHp Rab5a A30L mutant complex with GppNHp RCSB Y RCSB 2002-11-11 REL REL MG MAGNESIUM ION GTP GUANOSINE-5'-TRIPHOSPHATE BME BETA-MERCAPTOETHANOL HOH water MG2 201 2 MG MG 201 A GTP 200 3 GTP GTP 200 A BME 210 4 BME BME 210 A WAT 301 5 HOH HOH 301 A WAT 302 5 HOH HOH 302 A WAT 303 5 HOH HOH 303 A WAT 304 5 HOH HOH 304 A WAT 305 5 HOH HOH 305 A WAT 306 5 HOH HOH 306 A WAT 307 5 HOH HOH 307 A WAT 308 5 HOH HOH 308 A WAT 309 5 HOH HOH 309 A WAT 310 5 HOH HOH 310 A WAT 311 5 HOH HOH 311 A WAT 312 5 HOH HOH 312 A WAT 313 5 HOH HOH 313 A WAT 314 5 HOH HOH 314 A WAT 315 5 HOH HOH 315 A WAT 316 5 HOH HOH 316 A WAT 317 5 HOH HOH 317 A WAT 318 5 HOH HOH 318 A WAT 319 5 HOH HOH 319 A WAT 320 5 HOH HOH 320 A WAT 321 5 HOH HOH 321 A WAT 322 5 HOH HOH 322 A WAT 323 5 HOH HOH 323 A WAT 324 5 HOH HOH 324 A WAT 325 5 HOH HOH 325 A WAT 326 5 HOH HOH 326 A WAT 327 5 HOH HOH 327 A WAT 328 5 HOH HOH 328 A WAT 329 5 HOH HOH 329 A WAT 330 5 HOH HOH 330 A WAT 331 5 HOH HOH 331 A WAT 332 5 HOH HOH 332 A WAT 333 5 HOH HOH 333 A WAT 334 5 HOH HOH 334 A WAT 335 5 HOH HOH 335 A WAT 336 5 HOH HOH 336 A WAT 337 5 HOH HOH 337 A WAT 338 5 HOH HOH 338 A WAT 339 5 HOH HOH 339 A WAT 340 5 HOH HOH 340 A WAT 341 5 HOH HOH 341 A WAT 342 5 HOH HOH 342 A WAT 343 5 HOH HOH 343 A WAT 344 5 HOH HOH 344 A WAT 345 5 HOH HOH 345 A WAT 346 5 HOH HOH 346 A WAT 347 5 HOH HOH 347 A WAT 348 5 HOH HOH 348 A WAT 349 5 HOH HOH 349 A WAT 350 5 HOH HOH 350 A WAT 351 5 HOH HOH 351 A WAT 352 5 HOH HOH 352 A WAT 353 5 HOH HOH 353 A WAT 354 5 HOH HOH 354 A WAT 355 5 HOH HOH 355 A WAT 356 5 HOH HOH 356 A WAT 357 5 HOH HOH 357 A WAT 358 5 HOH HOH 358 A WAT 359 5 HOH HOH 359 A WAT 360 5 HOH HOH 360 A WAT 361 5 HOH HOH 361 A WAT 362 5 HOH HOH 362 A WAT 363 5 HOH HOH 363 A WAT 364 5 HOH HOH 364 A WAT 365 5 HOH HOH 365 A WAT 366 5 HOH HOH 366 A WAT 367 5 HOH HOH 367 A WAT 368 5 HOH HOH 368 A WAT 369 5 HOH HOH 369 A WAT 370 5 HOH HOH 370 A WAT 371 5 HOH HOH 371 A WAT 372 5 HOH HOH 372 A WAT 373 5 HOH HOH 373 A WAT 374 5 HOH HOH 374 A WAT 375 5 HOH HOH 375 A WAT 376 5 HOH HOH 376 A WAT 377 5 HOH HOH 377 A WAT 378 5 HOH HOH 378 A WAT 379 5 HOH HOH 379 A WAT 380 5 HOH HOH 380 A WAT 381 5 HOH HOH 381 A WAT 382 5 HOH HOH 382 A WAT 383 5 HOH HOH 383 A WAT 384 5 HOH HOH 384 A WAT 385 5 HOH HOH 385 A WAT 386 5 HOH HOH 386 A WAT 387 5 HOH HOH 387 A WAT 388 5 HOH HOH 388 A WAT 389 5 HOH HOH 389 A WAT 390 5 HOH HOH 390 A WAT 391 5 HOH HOH 391 A WAT 392 5 HOH HOH 392 A WAT 393 5 HOH HOH 393 A WAT 394 5 HOH HOH 394 A WAT 395 5 HOH HOH 395 A WAT 396 5 HOH HOH 396 A WAT 397 5 HOH HOH 397 A WAT 398 5 HOH HOH 398 A WAT 399 5 HOH HOH 399 A WAT 400 5 HOH HOH 400 A WAT 401 5 HOH HOH 401 A WAT 402 5 HOH HOH 402 A WAT 403 5 HOH HOH 403 A WAT 404 5 HOH HOH 404 A WAT 405 5 HOH HOH 405 A WAT 406 5 HOH HOH 406 A WAT 407 5 HOH HOH 407 A WAT 408 5 HOH HOH 408 A WAT 409 5 HOH HOH 409 A WAT 410 5 HOH HOH 410 A WAT 411 5 HOH HOH 411 A WAT 412 5 HOH HOH 412 A WAT 413 5 HOH HOH 413 A WAT 414 5 HOH HOH 414 A WAT 415 5 HOH HOH 415 A WAT 416 5 HOH HOH 416 A WAT 417 5 HOH HOH 417 A WAT 418 5 HOH HOH 418 A WAT 419 5 HOH HOH 419 A WAT 420 5 HOH HOH 420 A WAT 421 5 HOH HOH 421 A WAT 422 5 HOH HOH 422 A WAT 423 5 HOH HOH 423 A WAT 424 5 HOH HOH 424 A WAT 425 5 HOH HOH 425 A WAT 426 5 HOH HOH 426 A WAT 427 5 HOH HOH 427 A WAT 428 5 HOH HOH 428 A WAT 429 5 HOH HOH 429 A WAT 430 5 HOH HOH 430 A WAT 431 5 HOH HOH 431 A WAT 432 5 HOH HOH 432 A WAT 433 5 HOH HOH 433 A WAT 434 5 HOH HOH 434 A WAT 435 5 HOH HOH 435 A WAT 436 5 HOH HOH 436 A WAT 437 5 HOH HOH 437 A WAT 438 5 HOH HOH 438 A WAT 439 5 HOH HOH 439 A WAT 440 5 HOH HOH 440 A WAT 441 5 HOH HOH 441 A WAT 442 5 HOH HOH 442 A WAT 443 5 HOH HOH 443 A WAT 444 5 HOH HOH 444 A WAT 445 5 HOH HOH 445 A WAT 446 5 HOH HOH 446 A WAT 447 5 HOH HOH 447 A WAT 448 5 HOH HOH 448 A WAT 449 5 HOH HOH 449 A WAT 450 5 HOH HOH 450 A WAT 451 5 HOH HOH 451 A WAT 452 5 HOH HOH 452 A WAT 453 5 HOH HOH 453 A WAT 454 5 HOH HOH 454 A WAT 455 5 HOH HOH 455 A WAT 456 5 HOH HOH 456 A WAT 457 5 HOH HOH 457 A WAT 458 5 HOH HOH 458 A WAT 459 5 HOH HOH 459 A WAT 460 5 HOH HOH 460 A WAT 461 5 HOH HOH 461 A WAT 462 5 HOH HOH 462 A WAT 463 5 HOH HOH 463 A WAT 464 5 HOH HOH 464 A WAT 465 5 HOH HOH 465 A WAT 466 5 HOH HOH 466 A WAT 467 5 HOH HOH 467 A WAT 468 5 HOH HOH 468 A WAT 469 5 HOH HOH 469 A WAT 470 5 HOH HOH 470 A WAT 471 5 HOH HOH 471 A WAT 472 5 HOH HOH 472 A WAT 473 5 HOH HOH 473 A WAT 474 5 HOH HOH 474 A WAT 475 5 HOH HOH 475 A WAT 476 5 HOH HOH 476 A WAT 477 5 HOH HOH 477 A WAT 478 5 HOH HOH 478 A WAT 479 5 HOH HOH 479 A WAT 480 5 HOH HOH 480 A WAT 481 5 HOH HOH 481 A WAT 482 5 HOH HOH 482 A WAT 483 5 HOH HOH 483 A WAT 484 5 HOH HOH 484 A WAT 485 5 HOH HOH 485 A WAT 486 5 HOH HOH 486 A WAT 487 5 HOH HOH 487 A WAT 488 5 HOH HOH 488 A WAT 489 5 HOH HOH 489 A WAT 490 5 HOH HOH 490 A WAT 491 5 HOH HOH 491 A WAT 492 5 HOH HOH 492 A WAT 493 5 HOH HOH 493 A WAT 494 5 HOH HOH 494 A WAT 495 5 HOH HOH 495 A WAT 496 5 HOH HOH 496 A WAT 497 5 HOH HOH 497 A WAT 498 5 HOH HOH 498 A WAT 499 5 HOH HOH 499 A WAT 500 5 HOH HOH 500 A WAT 501 5 HOH HOH 501 A WAT 502 5 HOH HOH 502 A WAT 503 5 HOH HOH 503 A WAT 504 5 HOH HOH 504 A WAT 505 5 HOH HOH 505 A WAT 506 5 HOH HOH 506 A WAT 507 5 HOH HOH 507 A WAT 508 5 HOH HOH 508 A WAT 509 5 HOH HOH 509 A WAT 510 5 HOH HOH 510 A WAT 511 5 HOH HOH 511 A WAT 512 5 HOH HOH 512 A WAT 513 5 HOH HOH 513 A WAT 514 5 HOH HOH 514 A WAT 515 5 HOH HOH 515 A WAT 516 5 HOH HOH 516 A WAT 517 5 HOH HOH 517 A WAT 518 5 HOH HOH 518 A WAT 519 5 HOH HOH 519 A WAT 520 5 HOH HOH 520 A WAT 521 5 HOH HOH 521 A WAT 522 5 HOH HOH 522 A WAT 523 5 HOH HOH 523 A WAT 524 5 HOH HOH 524 A WAT 525 5 HOH HOH 525 A WAT 526 5 HOH HOH 526 A WAT 527 5 HOH HOH 527 A WAT 528 5 HOH HOH 528 A WAT 529 5 HOH HOH 529 A WAT 530 5 HOH HOH 530 A WAT 531 5 HOH HOH 531 A WAT 532 5 HOH HOH 532 A WAT 533 5 HOH HOH 533 A WAT 534 5 HOH HOH 534 A WAT 535 5 HOH HOH 535 A WAT 536 5 HOH HOH 536 A WAT 537 5 HOH HOH 537 A WAT 538 5 HOH HOH 538 A WAT 539 5 HOH HOH 539 A WAT 540 5 HOH HOH 540 A WAT 541 5 HOH HOH 541 A WAT 542 5 HOH HOH 542 A WAT 543 5 HOH HOH 543 A WAT 544 5 HOH HOH 544 A WAT 545 5 HOH HOH 545 A WAT 546 5 HOH HOH 546 A WAT 547 5 HOH HOH 547 A WAT 548 5 HOH HOH 548 A WAT 549 5 HOH HOH 549 A WAT 550 5 HOH HOH 550 A WAT 551 5 HOH HOH 551 A WAT 552 5 HOH HOH 552 A WAT 553 5 HOH HOH 553 A WAT 554 5 HOH HOH 554 A GLY 15 n 1 GLY 15 A ASN 16 n 2 ASN 16 A LYS 17 n 3 LYS 17 A ILE 18 n 4 ILE 18 A CYS 19 n 5 CYS 19 A GLN 20 n 6 GLN 20 A PHE 21 n 7 PHE 21 A LYS 22 n 8 LYS 22 A LEU 23 n 9 LEU 23 A VAL 24 n 10 VAL 24 A LEU 25 n 11 LEU 25 A LEU 26 n 12 LEU 26 A GLY 27 n 13 GLY 27 A GLU 28 n 14 GLU 28 A SER 29 n 15 SER 29 A PRO 30 n 16 PRO 30 A VAL 31 n 17 VAL 31 A GLY 32 n 18 GLY 32 A LYS 33 n 19 LYS 33 A SER 34 n 20 SER 34 A SER 35 n 21 SER 35 A LEU 36 n 22 LEU 36 A VAL 37 n 23 VAL 37 A LEU 38 n 24 LEU 38 A ARG 39 n 25 ARG 39 A PHE 40 n 26 PHE 40 A VAL 41 n 27 VAL 41 A LYS 42 n 28 LYS 42 A GLY 43 n 29 GLY 43 A GLN 44 n 30 GLN 44 A PHE 45 n 31 PHE 45 A HIS 46 n 32 HIS 46 A GLU 47 n 33 GLU 47 A PHE 48 n 34 PHE 48 A GLN 49 n 35 GLN 49 A GLU 50 n 36 GLU 50 A SER 51 n 37 SER 51 A THR 52 n 38 THR 52 A ILE 53 n 39 ILE 53 A GLY 54 n 40 GLY 54 A ALA 55 n 41 ALA 55 A ALA 56 n 42 ALA 56 A PHE 57 n 43 PHE 57 A LEU 58 n 44 LEU 58 A THR 59 n 45 THR 59 A GLN 60 n 46 GLN 60 A THR 61 n 47 THR 61 A VAL 62 n 48 VAL 62 A CYS 63 n 49 CYS 63 A LEU 64 n 50 LEU 64 A ASP 65 n 51 ASP 65 A ASP 66 n 52 ASP 66 A THR 67 n 53 THR 67 A THR 68 n 54 THR 68 A VAL 69 n 55 VAL 69 A LYS 70 n 56 LYS 70 A PHE 71 n 57 PHE 71 A GLU 72 n 58 GLU 72 A ILE 73 n 59 ILE 73 A TRP 74 n 60 TRP 74 A ASP 75 n 61 ASP 75 A THR 76 n 62 THR 76 A ALA 77 n 63 ALA 77 A GLY 78 n 64 GLY 78 A GLN 79 n 65 GLN 79 A GLU 80 n 66 GLU 80 A ARG 81 n 67 ARG 81 A TYR 82 n 68 TYR 82 A HIS 83 n 69 HIS 83 A SER 84 n 70 SER 84 A LEU 85 n 71 LEU 85 A ALA 86 n 72 ALA 86 A PRO 87 n 73 PRO 87 A MET 88 n 74 MET 88 A TYR 89 n 75 TYR 89 A TYR 90 n 76 TYR 90 A ARG 91 n 77 ARG 91 A GLY 92 n 78 GLY 92 A ALA 93 n 79 ALA 93 A GLN 94 n 80 GLN 94 A ALA 95 n 81 ALA 95 A ALA 96 n 82 ALA 96 A ILE 97 n 83 ILE 97 A VAL 98 n 84 VAL 98 A VAL 99 n 85 VAL 99 A TYR 100 n 86 TYR 100 A ASP 101 n 87 ASP 101 A ILE 102 n 88 ILE 102 A THR 103 n 89 THR 103 A ASN 104 n 90 ASN 104 A GLU 105 n 91 GLU 105 A GLU 106 n 92 GLU 106 A SER 107 n 93 SER 107 A PHE 108 n 94 PHE 108 A ALA 109 n 95 ALA 109 A ARG 110 n 96 ARG 110 A ALA 111 n 97 ALA 111 A LYS 112 n 98 LYS 112 A ASN 113 n 99 ASN 113 A TRP 114 n 100 TRP 114 A VAL 115 n 101 VAL 115 A LYS 116 n 102 LYS 116 A GLU 117 n 103 GLU 117 A LEU 118 n 104 LEU 118 A GLN 119 n 105 GLN 119 A ARG 120 n 106 ARG 120 A GLN 121 n 107 GLN 121 A ALA 122 n 108 ALA 122 A SER 123 n 109 SER 123 A PRO 124 n 110 PRO 124 A ASN 125 n 111 ASN 125 A ILE 126 n 112 ILE 126 A VAL 127 n 113 VAL 127 A ILE 128 n 114 ILE 128 A ALA 129 n 115 ALA 129 A LEU 130 n 116 LEU 130 A SER 131 n 117 SER 131 A GLY 132 n 118 GLY 132 A ASN 133 n 119 ASN 133 A LYS 134 n 120 LYS 134 A ALA 135 n 121 ALA 135 A ASP 136 n 122 ASP 136 A LEU 137 n 123 LEU 137 A ALA 138 n 124 ALA 138 A ASN 139 n 125 ASN 139 A LYS 140 n 126 LYS 140 A ARG 141 n 127 ARG 141 A ALA 142 n 128 ALA 142 A VAL 143 n 129 VAL 143 A ASP 144 n 130 ASP 144 A PHE 145 n 131 PHE 145 A GLN 146 n 132 GLN 146 A GLU 147 n 133 GLU 147 A ALA 148 n 134 ALA 148 A GLN 149 n 135 GLN 149 A SER 150 n 136 SER 150 A TYR 151 n 137 TYR 151 A ALA 152 n 138 ALA 152 A ASP 153 n 139 ASP 153 A ASP 154 n 140 ASP 154 A ASN 155 n 141 ASN 155 A SER 156 n 142 SER 156 A LEU 157 n 143 LEU 157 A LEU 158 n 144 LEU 158 A PHE 159 n 145 PHE 159 A MET 160 n 146 MET 160 A GLU 161 n 147 GLU 161 A THR 162 n 148 THR 162 A SER 163 n 149 SER 163 A ALA 164 n 150 ALA 164 A LYS 165 n 151 LYS 165 A THR 166 n 152 THR 166 A SER 167 n 153 SER 167 A MET 168 n 154 MET 168 A ASN 169 n 155 ASN 169 A VAL 170 n 156 VAL 170 A ASN 171 n 157 ASN 171 A GLU 172 n 158 GLU 172 A ILE 173 n 159 ILE 173 A PHE 174 n 160 PHE 174 A MET 175 n 161 MET 175 A ALA 176 n 162 ALA 176 A ILE 177 n 163 ILE 177 A ALA 178 n 164 ALA 178 A LYS 179 n 165 LYS 179 A LYS 180 n 166 LYS 180 A LEU 181 n 167 LEU 181 A PRO 182 n 168 PRO 182 A n 169 183 A n 170 184 A author_defined_assembly 1 monomeric A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 A THR 52 A OG1 THR 38 1_555 85.2 A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 A GTP 200 C O2G GTP 1_555 175.3 A THR 52 A OG1 THR 38 1_555 A MG 201 B MG MG 1_555 A GTP 200 C O2G GTP 1_555 90.1 A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 A GTP 200 C O2B GTP 1_555 91.7 A THR 52 A OG1 THR 38 1_555 A MG 201 B MG MG 1_555 A GTP 200 C O2B GTP 1_555 176.0 A GTP 200 C O2G GTP 1_555 A MG 201 B MG MG 1_555 A GTP 200 C O2B GTP 1_555 92.9 A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 A HOH 301 E O HOH 1_555 86.5 A THR 52 A OG1 THR 38 1_555 A MG 201 B MG MG 1_555 A HOH 301 E O HOH 1_555 92.1 A GTP 200 C O2G GTP 1_555 A MG 201 B MG MG 1_555 A HOH 301 E O HOH 1_555 94.5 A GTP 200 C O2B GTP 1_555 A MG 201 B MG MG 1_555 A HOH 301 E O HOH 1_555 90.3 A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 87.0 A THR 52 A OG1 THR 38 1_555 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 88.6 A GTP 200 C O2G GTP 1_555 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 92.0 A GTP 200 C O2B GTP 1_555 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 88.7 A HOH 301 E O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 173.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 60 A N GLN 46 A O PHE 71 A O PHE 57 A O THR 68 A O THR 54 A N LYS 17 A N LYS 3 A N LEU 26 A N LEU 12 A O VAL 99 A O VAL 85 A N VAL 98 A N VAL 84 A O ALA 129 A O ALA 115 A N LEU 130 A N LEU 116 A O LEU 158 A O LEU 144 1 A LYS 183 A LYS 169 1 Y 1 A ASN 184 A ASN 170 1 Y 1 A PRO 30 -119.49 76.99 1 A ASP 65 63.71 -110.65 1 A LEU 137 -98.95 34.65 1 A SER 167 97.88 -2.62 1 A ASN 169 58.15 12.67 protein_rep.param protein.top gtp.param gtp.top water_rep.param water.top ion.param ion.top bme1.param bme1.top 1.938 0 0 -1.332 0 -0.606 0.211 0.173 0.18 0.18 1.60 20 19501 20631 20496 99.2 RANDOM 1 THROUGHOUT 0.0 FOURIER SYNTHESIS Engh & Huber 0.20 0.16 5 0.12 0.06 1.60 20 254 1633 37 0 1342 0.010 1.48 1.808 1.5 2.504 2 3.199 2 4.406 2.5 18.1 1.60 20 1N6L 20631 20496 0.0 0.0 0.042 1 41.1 7.6 99.3 0.13 1.60 1.66 15.9 98.8 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS Crystal Structure of Human Rab5a A30P mutant complex with GTP 1 N N 2 N N 3 N N 4 N N 5 N N A GLY 32 A GLY 18 HELX_P A GLY 43 A GLY 29 1 1 12 A GLN 79 A GLN 65 HELX_P A SER 84 A SER 70 5 2 6 A LEU 85 A LEU 71 HELX_P A ARG 91 A ARG 77 1 3 7 A ASN 104 A ASN 90 HELX_P A ALA 122 A ALA 108 1 4 19 A LYS 134 A LYS 120 HELX_P A ARG 141 A ARG 127 5 5 8 A ASP 144 A ASP 130 HELX_P A ASN 155 A ASN 141 1 6 12 A ASN 169 A ASN 155 HELX_P A LEU 181 A LEU 167 1 7 13 covale 2.035 none A CYS 63 A SG CYS 49 1_555 A BME 210 D S2 BME 1_555 metalc 2.123 A SER 34 A OG SER 20 1_555 A MG 201 B MG MG 1_555 metalc 2.123 A THR 52 A OG1 THR 38 1_555 A MG 201 B MG MG 1_555 metalc 2.020 A GTP 200 C O2G GTP 1_555 A MG 201 B MG MG 1_555 metalc 2.065 A GTP 200 C O2B GTP 1_555 A MG 201 B MG MG 1_555 metalc 2.120 A MG 201 B MG MG 1_555 A HOH 301 E O HOH 1_555 metalc 2.131 A MG 201 B MG MG 1_555 A HOH 302 E O HOH 1_555 PROTEIN TRANSPORT Rab, GTPase, protein transport A SER 29 A SER 15 1 A PRO 30 A PRO 16 -0.19 RAB5A_HUMAN UNP 1 15 P20339 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF MAIAKKLPKN 15 184 1N6L 15 184 P20339 A 1 1 170 1 ALA engineered mutation PRO 30 1N6L A P20339 UNP 30 16 6 anti-parallel parallel parallel parallel parallel A ALA 55 A ALA 41 A LEU 64 A LEU 50 A THR 67 A THR 53 A THR 76 A THR 62 A LYS 17 A LYS 3 A GLY 27 A GLY 13 A ALA 95 A ALA 81 A ASP 101 A ASP 87 A VAL 127 A VAL 113 A ASN 133 A ASN 119 A LEU 158 A LEU 144 A GLU 161 A GLU 147 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 5 BINDING SITE FOR RESIDUE GTP A 200 A GTP 200 Software 30 BINDING SITE FOR RESIDUE BME A 210 A BME 210 Software 7 A SER 34 A SER 20 5 1_555 A THR 52 A THR 38 5 1_555 A GTP 200 C GTP 5 1_555 A HOH 301 E HOH 5 1_555 A HOH 302 E HOH 5 1_555 A SER 29 A SER 15 30 1_555 A PRO 30 A PRO 16 30 1_555 A VAL 31 A VAL 17 30 1_555 A GLY 32 A GLY 18 30 1_555 A LYS 33 A LYS 19 30 1_555 A SER 34 A SER 20 30 1_555 A SER 35 A SER 21 30 1_555 A PHE 45 A PHE 31 30 1_555 A HIS 46 A HIS 32 30 1_555 A GLU 47 A GLU 33 30 1_555 A GLN 49 A GLN 35 30 1_555 A THR 52 A THR 38 30 1_555 A GLY 78 A GLY 64 30 1_555 A ASN 133 A ASN 119 30 1_555 A LYS 134 A LYS 120 30 1_555 A ASP 136 A ASP 122 30 1_555 A LEU 137 A LEU 123 30 1_555 A SER 163 A SER 149 30 1_555 A ALA 164 A ALA 150 30 1_555 A LYS 165 A LYS 151 30 1_555 A LYS 180 A LYS 166 30 2_555 A MG 201 B MG 30 1_555 A HOH 301 E HOH 30 1_555 A HOH 302 E HOH 30 1_555 A HOH 303 E HOH 30 1_555 A HOH 304 E HOH 30 1_555 A HOH 333 E HOH 30 1_555 A HOH 341 E HOH 30 1_555 A HOH 400 E HOH 30 1_555 A HOH 474 E HOH 30 1_555 A GLY 15 A GLY 1 7 1_555 A ALA 55 A ALA 41 7 4_556 A CYS 63 A CYS 49 7 1_555 A ASP 65 A ASP 51 7 1_555 A ASP 66 A ASP 52 7 1_555 A THR 67 A THR 53 7 1_555 A THR 68 A THR 54 7 1_555 19 P 21 21 21