1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Pineda-Lucena, A. Arrowsmith, C.H. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US PROTEIN SCI. PRCIEI 0795 0961-8368 12 1136 1140 10.1110/ps.0240903 12717036 A novel member of the split beta-alpha-beta fold: Solution structure of the hypothetical protein YML108W from Saccharomyces cerevisiae. Ontario Centre for Structural Proteomics target (YST0204_1_105); Northeast Structural Genomics Target (YT601). 2003 10.2210/pdb1n6z/pdb pdb_00001n6z 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12355.082 Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region YML108W 1 man polymer no no MSKSNTYRMLVLLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDELDELNTWFDKFDAEICIPNEGHIKYEISSDG LIVLMLDKEIEEVVEKVKKFVEENN MSKSNTYRMLVLLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDELDELNTWFDKFDAEICIPNEGHIKYEISSDG LIVLMLDKEIEEVVEKVKKFVEENN A YT601 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample YML108W OR YM8339.11 4932 Saccharomyces cerevisiae 562 Escherichia coli Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2003-05-06 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession The protein that was structurally determined also contains a His tag prior to the sequence listed in the SEQRES. The His tag sequence is MGSSHHHHHHSSGLVPRGSH. These His tag residues were missing in the electron density. Y RCSB Y RCSB 2002-11-12 REL REL THIS STRUCTURE WAS DETERMINED USING STANDARD 3D HETERONUECLEAR NMR TECHNIQUES structures with the lowest energy 200 10 3D_13C-separated_NOESY 3D_15N-separated_NOESY 900E-3 6.5 AMBIENT 298 K torsion angle dynamics 1 lowest energy 1 mM, U-15N,13C 25 mM sodium phosphate (pH=6.5), 450 mM NaCl, 1 mM DTT 95% H20/5% D2O DELAGLIO ET AL. processing NMRPipe 2.1 GUNTERT ET AL. structure solution DYANA 1.5 BARTELS ET AL. data analysis XEASY 1.3.14 HERRMANN ET AL. structure solution CYANA 1.0.5 GUNTERT ET AL. refinement DYANA 1.5 600 Varian UNITY MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A LYS 3 n 3 LYS 3 A SER 4 n 4 SER 4 A ASN 5 n 5 ASN 5 A THR 6 n 6 THR 6 A TYR 7 n 7 TYR 7 A ARG 8 n 8 ARG 8 A MET 9 n 9 MET 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A LEU 12 n 12 LEU 12 A LEU 13 n 13 LEU 13 A GLU 14 n 14 GLU 14 A ASP 15 n 15 ASP 15 A ASP 16 n 16 ASP 16 A THR 17 n 17 THR 17 A LYS 18 n 18 LYS 18 A ILE 19 n 19 ILE 19 A ASN 20 n 20 ASN 20 A LYS 21 n 21 LYS 21 A GLU 22 n 22 GLU 22 A ASP 23 n 23 ASP 23 A GLU 24 n 24 GLU 24 A LYS 25 n 25 LYS 25 A PHE 26 n 26 PHE 26 A LEU 27 n 27 LEU 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A LYS 30 n 30 LYS 30 A PRO 31 n 31 PRO 31 A GLY 32 n 32 GLY 32 A LYS 33 n 33 LYS 33 A MET 34 n 34 MET 34 A HIS 35 n 35 HIS 35 A GLU 36 n 36 GLU 36 A PHE 37 n 37 PHE 37 A VAL 38 n 38 VAL 38 A ASP 39 n 39 ASP 39 A GLU 40 n 40 GLU 40 A LEU 41 n 41 LEU 41 A ILE 42 n 42 ILE 42 A LEU 43 n 43 LEU 43 A PRO 44 n 44 PRO 44 A PHE 45 n 45 PHE 45 A ASN 46 n 46 ASN 46 A VAL 47 n 47 VAL 47 A ASP 48 n 48 ASP 48 A GLU 49 n 49 GLU 49 A LEU 50 n 50 LEU 50 A ASP 51 n 51 ASP 51 A GLU 52 n 52 GLU 52 A LEU 53 n 53 LEU 53 A ASN 54 n 54 ASN 54 A THR 55 n 55 THR 55 A TRP 56 n 56 TRP 56 A PHE 57 n 57 PHE 57 A ASP 58 n 58 ASP 58 A LYS 59 n 59 LYS 59 A PHE 60 n 60 PHE 60 A ASP 61 n 61 ASP 61 A ALA 62 n 62 ALA 62 A GLU 63 n 63 GLU 63 A ILE 64 n 64 ILE 64 A CYS 65 n 65 CYS 65 A ILE 66 n 66 ILE 66 A PRO 67 n 67 PRO 67 A ASN 68 n 68 ASN 68 A GLU 69 n 69 GLU 69 A GLY 70 n 70 GLY 70 A HIS 71 n 71 HIS 71 A ILE 72 n 72 ILE 72 A LYS 73 n 73 LYS 73 A TYR 74 n 74 TYR 74 A GLU 75 n 75 GLU 75 A ILE 76 n 76 ILE 76 A SER 77 n 77 SER 77 A SER 78 n 78 SER 78 A ASP 79 n 79 ASP 79 A GLY 80 n 80 GLY 80 A LEU 81 n 81 LEU 81 A ILE 82 n 82 ILE 82 A VAL 83 n 83 VAL 83 A LEU 84 n 84 LEU 84 A MET 85 n 85 MET 85 A LEU 86 n 86 LEU 86 A ASP 87 n 87 ASP 87 A LYS 88 n 88 LYS 88 A GLU 89 n 89 GLU 89 A ILE 90 n 90 ILE 90 A GLU 91 n 91 GLU 91 A GLU 92 n 92 GLU 92 A VAL 93 n 93 VAL 93 A VAL 94 n 94 VAL 94 A GLU 95 n 95 GLU 95 A LYS 96 n 96 LYS 96 A VAL 97 n 97 VAL 97 A LYS 98 n 98 LYS 98 A LYS 99 n 99 LYS 99 A PHE 100 n 100 PHE 100 A VAL 101 n 101 VAL 101 A GLU 102 n 102 GLU 102 A GLU 103 n 103 GLU 103 A ASN 104 n 104 ASN 104 A ASN 105 n 105 ASN 105 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 41 A O LEU 41 A N MET 9 A N MET 9 A N LEU 10 A N LEU 10 A O LEU 84 A O LEU 84 A O LEU 81 A O LEU 81 A N SER 77 A N SER 77 1 A A H O SER LEU 77 81 1.53 1 A A O H SER GLY 77 80 1.57 2 A A H O SER LEU 77 81 1.50 2 A A O H LEU LEU 10 84 1.58 2 A A O HD21 LEU ASN 50 54 1.58 2 A A O H SER GLY 77 80 1.59 3 A A H O SER LEU 77 81 1.51 3 A A O H LEU PHE 53 57 1.54 4 A A H O SER LEU 77 81 1.50 4 A A O H SER GLY 77 80 1.53 5 A A O H GLU LEU 49 53 1.55 5 A A O H SER GLY 77 80 1.58 5 A A H O MET LEU 9 41 1.59 6 A A O HD22 SER ASN 4 46 1.49 6 A A O H SER GLY 77 80 1.56 6 A A O HD21 VAL ASN 101 105 1.58 7 A A H O SER LEU 77 81 1.50 7 A A O H SER GLY 77 80 1.55 7 A A H O MET LEU 9 41 1.57 7 A A O H TRP PHE 56 60 1.59 7 A A O HD21 VAL ASN 101 105 1.59 7 A A O H VAL VAL 93 97 1.59 7 A A O H ALA ILE 62 66 1.60 8 A A H O SER LEU 77 81 1.50 8 A A O H LEU PHE 53 57 1.56 8 A A O HD21 VAL ASN 101 105 1.57 9 A A H O SER LEU 77 81 1.50 9 A A H O MET LEU 9 41 1.58 9 A A O H SER GLY 77 80 1.60 9 A A O H LEU LEU 10 84 1.60 10 A A H O SER LEU 77 81 1.49 10 A A O H SER GLY 77 80 1.54 10 A A O H LEU PHE 53 57 1.57 10 A A O H VAL VAL 93 97 1.59 1 A LYS 3 -49.18 154.23 1 A ASN 5 -164.35 103.29 1 A ASN 20 -63.77 -158.47 1 A ASP 23 -144.98 -71.30 1 A GLU 24 -161.20 100.22 1 A LYS 28 -65.31 74.41 1 A PRO 44 -75.00 42.89 1 A ASP 48 -108.48 40.95 1 A GLU 49 -151.61 35.47 2 A SER 2 165.37 42.88 2 A LYS 3 73.57 89.81 2 A SER 4 -179.30 -174.56 2 A LYS 18 -172.37 35.08 2 A ASN 20 -64.93 -155.76 2 A ASP 23 -147.12 -65.90 2 A PHE 26 178.64 47.83 2 A HIS 35 39.09 78.97 2 A PRO 44 -74.99 41.53 2 A GLU 49 -155.42 35.82 3 A LYS 3 68.40 166.06 3 A ASN 5 -161.40 108.29 3 A THR 17 46.79 -174.77 3 A ASN 20 -65.22 -152.78 3 A ASP 23 -150.67 -66.56 3 A PHE 26 179.25 79.21 3 A HIS 35 46.56 71.60 3 A PRO 44 -75.04 41.93 3 A GLU 49 -162.96 38.50 4 A SER 2 -129.61 -52.76 4 A LYS 3 -152.75 50.52 4 A THR 17 47.40 -174.79 4 A ASN 20 -64.89 -152.27 4 A ASP 23 -151.63 -65.75 4 A PHE 26 -168.82 61.80 4 A HIS 35 44.58 71.27 4 A PRO 44 -74.95 40.51 4 A GLU 49 -153.01 36.06 5 A SER 2 39.17 35.34 5 A SER 4 76.38 -55.88 5 A ASN 5 174.07 122.41 5 A LYS 18 -170.16 74.88 5 A ASN 20 -65.10 -149.98 5 A ASP 23 -153.08 -70.77 5 A PHE 26 -178.60 76.97 5 A HIS 35 45.86 74.89 5 A PRO 44 -74.93 41.47 5 A GLU 49 -159.35 32.62 6 A SER 2 157.65 -32.34 6 A LYS 3 -40.11 -70.34 6 A ASN 5 79.41 97.11 6 A TYR 7 -124.02 -169.29 6 A LYS 18 179.18 79.35 6 A ASN 20 -64.97 -159.96 6 A ASP 23 -149.46 -67.39 6 A GLU 24 -161.44 102.62 6 A HIS 35 50.93 79.03 6 A PRO 44 -75.11 41.63 6 A GLU 49 -157.16 38.49 7 A SER 2 -99.89 -63.58 7 A THR 17 -58.16 171.85 7 A LYS 18 -157.83 53.98 7 A ASN 20 -62.70 -156.13 7 A ASP 23 -143.12 -66.33 7 A LYS 28 -61.84 -76.83 7 A PRO 44 -74.85 41.60 7 A ASP 48 -107.11 40.18 7 A GLU 49 -154.18 37.04 8 A SER 2 164.38 -29.07 8 A LYS 3 -116.63 -73.56 8 A SER 4 157.90 76.17 8 A ASN 5 157.63 116.25 8 A LYS 18 -177.59 36.50 8 A ASN 20 -66.73 -162.68 8 A ASP 23 -153.92 -69.52 8 A HIS 35 69.54 73.70 8 A PRO 44 -74.92 41.30 8 A ASP 48 -108.25 40.64 8 A GLU 49 -155.69 38.21 9 A SER 4 160.92 44.13 9 A ASN 5 172.41 107.48 9 A TYR 7 -126.35 -169.08 9 A THR 17 -53.40 97.46 9 A ASN 20 -64.49 -157.01 9 A ASP 23 -141.30 -70.69 9 A GLU 24 -160.76 100.61 9 A LYS 28 -67.79 68.75 9 A HIS 35 -38.60 124.80 9 A PRO 44 -75.00 41.80 9 A ASP 48 -104.86 41.59 9 A GLU 49 -150.38 30.05 10 A LYS 3 -41.18 158.32 10 A SER 4 79.58 -69.26 10 A ASN 5 174.80 125.50 10 A THR 17 45.54 -161.99 10 A ASN 20 -65.56 -157.04 10 A ASP 23 -142.38 -66.69 10 A GLU 24 -160.44 100.03 10 A LYS 28 -32.18 -91.43 10 A HIS 35 50.61 73.11 10 A PRO 44 -74.95 43.12 10 A GLU 49 -152.02 34.67 Solution NMR Structure of Protein YML108W from Saccharomyces cerevisiae. A novel member of the split bab fold. Northeast Structural Genomics Consortium Target YT601. 1 N N A GLU 49 A GLU 49 HELX_P A ILE 66 A ILE 66 1 1 18 A ILE 90 A ILE 90 HELX_P A ASN 105 A ASN 105 1 2 16 STRUCTURAL GENOMICS, UNKNOWN FUNCTION STRUCTURAL PROTEOMICS, STRUCTURAL GENOMICS, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, PSI, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION YMK8_YEAST UNP 1 1 Q03759 MSKSNTYRMLVLLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDELDELNTWFDKFDAEICIPNEGHIKYEISSDG LIVLMLDKEIEEVVEKVKKFVEENN 1 105 1N6Z 1 105 Q03759 A 1 1 105 4 anti-parallel parallel anti-parallel A PHE 37 A PHE 37 A LEU 43 A LEU 43 A TYR 7 A TYR 7 A LEU 13 A LEU 13 A LEU 81 A LEU 81 A LEU 86 A LEU 86 A ILE 72 A ILE 72 A SER 77 A SER 77