1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Volk, D.E.
Thiviyanathan, V.
Rice, J.S.
Luxon, B.A.
Shah, J.H.
Yagi, H.
Sayer, J.M.
Yeh, H.J.C.
Jerina, D.M.
Gorenstein, D.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C20 H16 O
272.340
(9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYRENE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
C
Y
151
N
C
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
doub
Y
155
N
sing
Y
156
N
sing
Y
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
doub
Y
163
N
sing
N
164
N
sing
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
doub
N
170
N
sing
Y
171
N
sing
Y
172
N
doub
N
173
N
sing
Y
174
N
sing
N
175
N
sing
Y
176
N
doub
Y
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
1410
1420
10.1021/bi026745u
12578353
Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex
2003
10.2210/pdb1n8c/pdb
pdb_00001n8c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3399.223
5'-D(*CP*GP*GP*TP*CP*AP*CP*GP*AP*GP*G)-3'
1
syn
polymer
3310.161
5'-D(*CP*CP*TP*CP*GP*TP*GP*AP*CP*CP*G)-3'
1
syn
polymer
272.340
(9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYRENE
1
syn
non-polymer
no
no
(DC)(DG)(DG)(DT)(DC)(DA)(DC)(DG)(DA)(DG)(DG)
CGGTCACGAGG
A
polydeoxyribonucleotide
no
no
(DC)(DC)(DT)(DC)(DG)(DT)(DG)(DA)(DC)(DC)(DG)
CCTCGTGACCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-0.907
1
19
A
1
B
22
-0.892
A_DC1:DG22_B
1
-3.293
0.218
-0.206
-0.136
20.688
1
19
A
2
B
21
1.801
A_DG2:DC21_B
2
4.039
-0.591
0.503
-0.171
6.215
1
19
A
3
B
20
-2.803
A_DG3:DC20_B
3
-5.011
-0.185
0.267
-0.125
9.493
1
20
A
4
B
19
0.114
A_DT4:DA19_B
4
-11.816
-0.482
0.013
-0.049
6.822
1
19
A
5
B
18
4.113
A_DC5:DG18_B
5
-19.063
0.555
-0.134
-0.226
-18.057
1
20
A
6
B
17
8.208
A_DA6:DT17_B
6
33.634
-0.402
-0.104
-0.040
-4.480
1
19
A
7
B
16
2.674
A_DC7:DG16_B
7
22.018
0.487
0.118
-0.191
12.892
1
19
A
8
B
15
-0.457
A_DG8:DC15_B
8
-12.503
-0.339
0.290
-0.158
4.299
1
20
A
9
B
14
-1.255
A_DA9:DT14_B
9
-11.411
0.158
0.196
-0.092
-5.976
1
19
A
10
B
13
-2.379
A_DG10:DC13_B
10
-13.808
-0.260
0.191
-0.203
-12.723
1
19
A
11
B
12
-1.973
A_DG11:DC12_B
11
-19.025
-0.321
0.152
-0.191
3.130
24.156
A
A
1
2
23.125
B
B
22
21
3.018
9.293
0.101
1.309
AA_DC1DG2:DC21DG22_BB
1
-6.837
17.013
21.258
0.159
-2.427
3.755
37.597
A
A
2
3
-2.228
B
B
21
20
3.707
-1.435
0.211
-1.246
AA_DG2DG3:DC20DC21_BB
2
1.143
-1.775
37.553
-1.720
-0.158
3.252
33.063
A
A
3
4
-6.199
B
B
20
19
3.233
-3.516
-0.234
-0.725
AA_DG3DT4:DA19DC20_BB
3
3.341
-5.891
32.715
-0.682
0.974
3.287
39.729
A
A
4
5
3.474
B
B
19
18
3.243
2.354
0.674
-0.117
AA_DT4DC5:DG18DA19_BB
4
4.806
-7.091
39.381
-0.447
-0.432
5.374
25.613
A
A
5
6
28.073
B
B
18
17
6.690
10.275
-1.595
2.140
AA_DC5DA6:DT17DG18_BB
5
-19.907
54.390
12.496
-2.467
-10.532
2.579
18.122
A
A
6
7
25.855
B
B
17
16
3.250
7.869
-0.693
-0.680
AA_DA6DC7:DG16DT17_BB
6
1.330
-4.371
16.283
-6.363
2.911
2.939
34.969
A
A
7
8
-10.303
B
B
16
15
3.089
-6.158
-0.892
0.857
AA_DC7DG8:DC15DG16_BB
7
-1.878
3.143
34.390
2.290
1.222
3.427
40.164
A
A
8
9
3.682
B
B
15
14
3.444
2.527
0.126
-0.145
AA_DG8DA9:DT14DC15_BB
8
-0.398
0.580
40.086
-0.513
-0.230
3.419
34.829
A
A
9
10
4.127
B
B
14
13
3.474
2.467
-0.136
-0.719
AA_DA9DG10:DC13DT14_BB
9
-1.842
3.082
34.697
-1.598
-0.068
3.357
37.069
A
A
10
11
8.423
B
B
13
12
3.466
5.337
0.088
-0.529
AA_DG10DG11:DC12DC13_BB
10
-0.522
0.824
36.693
-1.581
-0.211
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2003-02-14
1
1
2008-04-28
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-11-20
REL
REL
TBC
(9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYRENE
10 structures and their minimized average were deposited
11
11
2D NOESY
2D NOESY
2D TOCSY
2D ROESY
Exchange-Only
100 mM
6.7
ambient
278
K
100 mM
6.7
ambient
288
K
1
minimized average structure
1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide
90% H2O/10% D2O
1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide
99.96% D2O
collection
VNMR
6.1
data analysis
VNMR
6.1
D.G.Gorenstein, et al. UTMB
iterative matrix relaxation
MORASS
2.51
PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN
refinement
Amber
5.0, 6.0, and 7.0
750
Varian
UNITYPLUS
600
Varian
UNITYPLUS
THB
23
3
TBC
TBC
23
A
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
+A
6
n
6
DA
6
A
C
7
n
7
DC
7
A
G
8
n
8
DG
8
A
A
9
n
9
DA
9
A
G
10
n
10
DG
10
A
G
11
n
11
DG
11
A
C
12
n
1
DC
12
B
C
13
n
2
DC
13
B
T
14
n
3
DT
14
B
C
15
n
4
DC
15
B
G
16
n
5
DG
16
B
T
17
n
6
DT
17
B
G
18
n
7
DG
18
B
A
19
n
8
DA
19
B
C
20
n
9
DC
20
B
C
21
n
10
DC
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
8
0.069
SIDE CHAIN
1
B
DG
18
0.113
SIDE CHAIN
2
A
DG
3
0.099
SIDE CHAIN
2
A
DT
4
0.102
SIDE CHAIN
2
A
DC
5
0.119
SIDE CHAIN
2
A
DA
6
0.058
SIDE CHAIN
2
A
DG
8
0.073
SIDE CHAIN
2
A
DG
10
0.095
SIDE CHAIN
2
A
DG
11
0.064
SIDE CHAIN
2
B
DT
14
0.099
SIDE CHAIN
2
B
DG
18
0.181
SIDE CHAIN
3
A
DC
1
0.075
SIDE CHAIN
3
A
DC
5
0.095
SIDE CHAIN
3
A
DG
8
0.065
SIDE CHAIN
3
B
DG
18
0.082
SIDE CHAIN
3
B
DA
19
0.093
SIDE CHAIN
3
B
DG
22
0.115
SIDE CHAIN
4
A
DT
4
0.072
SIDE CHAIN
4
A
DG
8
0.077
SIDE CHAIN
4
A
DG
11
0.076
SIDE CHAIN
4
B
DC
12
0.084
SIDE CHAIN
4
B
DG
18
0.091
SIDE CHAIN
4
B
DG
22
0.068
SIDE CHAIN
5
A
DG
2
0.053
SIDE CHAIN
5
A
DG
3
0.067
SIDE CHAIN
5
A
DT
4
0.076
SIDE CHAIN
5
A
DA
6
0.061
SIDE CHAIN
5
A
DG
8
0.087
SIDE CHAIN
5
A
DG
11
0.079
SIDE CHAIN
5
B
DC
15
0.085
SIDE CHAIN
5
B
DG
18
0.133
SIDE CHAIN
5
B
DG
22
0.070
SIDE CHAIN
6
A
DT
4
0.072
SIDE CHAIN
6
A
DG
8
0.080
SIDE CHAIN
6
A
DA
9
0.060
SIDE CHAIN
6
B
DC
15
0.073
SIDE CHAIN
6
B
DG
18
0.129
SIDE CHAIN
6
B
DC
21
0.112
SIDE CHAIN
7
B
DG
18
0.125
SIDE CHAIN
8
A
DT
4
0.098
SIDE CHAIN
8
A
DG
8
0.083
SIDE CHAIN
8
A
DA
9
0.061
SIDE CHAIN
8
B
DG
18
0.140
SIDE CHAIN
8
B
DG
22
0.056
SIDE CHAIN
9
A
DG
2
0.063
SIDE CHAIN
9
A
DC
5
0.061
SIDE CHAIN
9
A
DC
7
0.103
SIDE CHAIN
9
A
DA
9
0.058
SIDE CHAIN
9
A
DG
11
0.065
SIDE CHAIN
9
B
DG
18
0.127
SIDE CHAIN
10
A
DC
7
0.090
SIDE CHAIN
10
A
DG
8
0.086
SIDE CHAIN
10
A
DA
9
0.054
SIDE CHAIN
10
A
DG
11
0.061
SIDE CHAIN
10
B
DC
15
0.079
SIDE CHAIN
10
B
DG
16
0.064
SIDE CHAIN
10
B
DG
18
0.107
SIDE CHAIN
10
B
DC
20
0.062
SIDE CHAIN
10
B
DC
21
0.083
SIDE CHAIN
11
B
DG
18
0.105
SIDE CHAIN
11
B
DC
21
0.078
SIDE CHAIN
1
3.92
0.60
106.00
109.92
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
-4.38
0.70
121.90
117.52
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
1
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.61
0.60
106.00
109.61
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
1
7.20
1.20
119.70
126.90
A
A
A
C3'
O3'
P
DC
DC
DA
5
5
6
Y
1
-6.01
0.60
118.60
112.59
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
1
-3.83
0.50
117.00
113.17
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
1
3.71
0.50
117.70
121.41
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
1
-4.30
0.60
118.60
114.30
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
1
3.66
0.60
106.00
109.66
B
B
B
O4'
C4'
C3'
DC
DC
DC
12
12
12
N
1
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
1.86
0.30
108.30
110.16
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
1
-4.05
0.60
122.90
118.85
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
1
-4.63
0.70
119.90
115.27
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
1
-3.57
0.50
117.00
113.43
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
1
3.16
0.50
117.70
120.86
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
1
-4.51
0.60
118.60
114.09
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
1
2.81
0.30
108.30
111.11
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
1
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
3.50
0.30
108.30
111.80
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
7.31
1.20
102.50
109.81
A
A
A
C3'
C2'
C1'
DC
DC
DC
1
1
1
N
2
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
4.12
0.60
118.90
123.02
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
2
3.99
0.60
106.00
109.99
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
2
-5.12
0.70
119.90
114.78
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
2
2.86
0.30
108.30
111.16
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
-3.39
0.50
128.60
125.21
A
A
A
N3
C4
C5
DG
DG
DG
3
3
3
N
2
8.25
1.20
119.70
127.95
A
A
A
C3'
O3'
P
DG
DG
DT
3
3
4
Y
2
4.13
0.60
106.00
110.13
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
2
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
-3.06
0.50
121.30
118.24
A
A
A
C6
N1
C2
DT
DT
DT
4
4
4
N
2
4.32
0.70
124.90
129.22
A
A
A
C5
C4
O4
DT
DT
DT
4
4
4
N
2
3.79
0.60
118.90
122.69
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
2
-4.25
0.70
121.90
117.65
A
A
A
N3
C2
O2
DC
DC
DC
5
5
5
N
2
-4.18
0.40
104.50
100.32
A
A
A
O4'
C4'
C3'
DA
DA
DA
6
6
6
N
2
6.93
0.30
108.30
115.23
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
2
-4.21
0.60
118.60
114.39
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
2
-5.87
0.70
118.00
112.13
A
A
A
N3
C4
N4
DC
DC
DC
7
7
7
N
2
5.02
0.70
120.20
125.22
A
A
A
C5
C4
N4
DC
DC
DC
7
7
7
N
2
4.52
0.60
106.00
110.52
A
A
A
O4'
C4'
C3'
DA
DA
DA
9
9
9
N
2
-4.67
0.70
108.00
103.33
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
2
-6.64
0.60
118.60
111.96
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
2
-4.90
0.70
108.00
103.10
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
2
-5.04
0.80
102.40
97.36
B
B
B
C3'
C2'
C1'
DC
DC
DC
13
13
13
N
2
-5.14
0.70
121.90
116.76
B
B
B
N3
C2
O2
DC
DC
DC
13
13
13
N
2
7.26
1.20
119.70
126.96
B
B
B
C3'
O3'
P
DT
DT
DC
14
14
15
Y
2
2.42
0.30
108.30
110.72
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
3.25
0.40
121.90
125.15
B
B
B
N3
C4
C5
DC
DC
DC
15
15
15
N
2
-3.50
0.50
117.40
113.90
B
B
B
C4
C5
C6
DC
DC
DC
15
15
15
N
2
4.13
0.50
106.80
110.93
B
B
B
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
2
-2.49
0.40
110.80
108.31
B
B
B
C4
C5
N7
DG
DG
DG
16
16
16
N
2
5.24
0.60
130.40
135.64
B
B
B
C6
C5
N7
DG
DG
DG
16
16
16
N
2
-5.38
0.60
119.90
114.52
B
B
B
N1
C6
O6
DG
DG
DG
16
16
16
N
2
5.61
0.30
108.30
113.91
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
2
3.81
0.60
114.60
118.41
B
B
B
N1
C2
N3
DT
DT
DT
17
17
17
N
2
-4.47
0.60
123.70
119.23
B
B
B
C5
C6
N1
DT
DT
DT
17
17
17
N
2
-3.81
0.60
122.30
118.49
B
B
B
N3
C2
O2
DT
DT
DT
17
17
17
N
2
-6.46
0.60
122.90
116.44
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
2
2.87
0.30
108.30
111.17
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
2
7.80
0.90
116.20
124.00
B
B
B
N1
C2
N2
DG
DG
DG
18
18
18
N
2
-8.20
0.70
119.90
111.70
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
2
-5.58
0.60
119.90
114.32
B
B
B
N1
C6
O6
DG
DG
DG
18
18
18
N
2
8.11
1.10
109.80
117.91
B
B
B
C5'
C4'
O4'
DA
DA
DA
19
19
19
N
2
-3.63
0.50
117.00
113.37
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
2
8.08
0.30
108.30
116.38
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
2
4.72
0.60
106.00
110.72
B
B
B
O4'
C4'
C3'
DC
DC
DC
21
21
21
N
2
5.86
0.30
108.30
114.16
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
2
4.26
0.60
118.90
123.16
B
B
B
N1
C2
O2
DC
DC
DC
21
21
21
N
2
-5.89
0.70
121.90
116.01
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
2
4.45
0.30
108.30
112.75
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
4.05
0.50
113.10
117.15
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
2
-3.71
0.40
106.40
102.69
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
2
-5.20
0.70
119.90
114.70
B
B
B
N3
C2
N2
DG
DG
DG
22
22
22
N
3
-4.45
0.70
121.90
117.45
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
3
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
3
3.99
0.60
106.00
109.99
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
3
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
8.67
1.20
119.70
128.37
A
A
A
C3'
O3'
P
DC
DC
DA
5
5
6
Y
3
-5.70
0.60
118.60
112.90
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
3
3.68
0.60
118.90
122.58
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
3
-4.49
0.70
121.90
117.41
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
3
-4.82
0.70
118.00
113.18
A
A
A
N3
C4
N4
DC
DC
DC
7
7
7
N
3
1.97
0.30
108.30
110.27
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
-3.22
0.50
117.00
113.78
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
3
3.58
0.50
117.70
121.28
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
3
2.22
0.30
108.30
110.52
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
3
-3.65
0.50
117.00
113.35
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
3
3.21
0.50
117.70
120.91
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
3
-3.73
0.60
118.60
114.87
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
3
4.48
0.30
108.30
112.78
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
3
2.42
0.30
108.30
110.72
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
3
-4.55
0.70
121.90
117.35
B
B
B
N3
C2
O2
DC
DC
DC
21
21
21
N
3
4.02
0.30
108.30
112.32
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
4
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
-4.39
0.70
121.90
117.51
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
4
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
4
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
4.43
0.60
106.00
110.43
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
4
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
4
-3.77
0.60
122.90
119.13
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
4
-4.95
0.60
118.60
113.65
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
4
-3.43
0.50
117.00
113.57
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
4
3.39
0.50
117.70
121.09
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
4
-4.87
0.60
118.60
113.73
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
4
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
4
-4.90
0.60
122.90
118.00
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
4
-4.44
0.70
119.90
115.46
B
B
B
N3
C2
N2
DG
DG
DG
16
16
16
N
4
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
4
-3.83
0.60
122.90
119.07
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
4
2.05
0.30
108.30
110.35
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
4
-3.13
0.50
117.00
113.87
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
4
3.17
0.50
117.70
120.87
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
4
-4.50
0.60
118.60
114.10
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
4
4.10
0.30
108.30
112.40
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
5
-4.67
0.70
121.90
117.23
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
5
3.72
0.60
106.00
109.72
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
5
-6.85
0.70
119.90
113.05
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
5
3.63
0.60
106.00
109.63
A
A
A
O4'
C4'
C3'
DG
DG
DG
3
3
3
N
5
4.03
0.60
106.00
110.03
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
5
-3.43
0.40
104.50
101.07
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
5
8.19
1.20
119.70
127.89
A
A
A
C3'
O3'
P
DC
DC
DA
5
5
6
Y
5
-5.30
0.60
118.60
113.30
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
5
-4.31
0.50
117.00
112.69
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
5
4.28
0.50
117.70
121.98
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
5
-4.55
0.60
118.60
114.05
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
5
4.02
0.60
106.00
110.02
B
B
B
O4'
C4'
C3'
DC
DC
DC
13
13
13
N
5
2.81
0.30
108.30
111.11
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
5
-4.31
0.70
119.90
115.59
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
5
3.98
0.60
106.00
109.98
B
B
B
O4'
C4'
C3'
DA
DA
DA
19
19
19
N
5
-4.12
0.50
117.00
112.88
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
5
3.35
0.50
117.70
121.05
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
5
-5.30
0.60
118.60
113.30
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
5
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
5
-5.26
0.70
118.00
112.74
B
B
B
N3
C4
N4
DC
DC
DC
21
21
21
N
5
4.82
0.30
108.30
113.12
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
6
3.74
0.60
106.00
109.74
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
6
-4.66
0.70
121.90
117.24
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
6
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
6
9.27
1.20
119.70
128.97
A
A
A
C3'
O3'
P
DC
DC
DA
5
5
6
Y
6
-5.65
0.60
118.60
112.95
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
6
-3.59
0.50
117.00
113.41
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
6
3.95
0.50
117.70
121.65
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
6
-4.90
0.60
118.60
113.70
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
6
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
6
-4.17
0.60
122.90
118.73
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
6
2.91
0.30
108.30
111.21
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
6
-3.77
0.60
122.90
119.13
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
6
-4.49
0.70
119.90
115.41
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
6
-3.65
0.50
117.00
113.35
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
6
3.13
0.50
117.70
120.83
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
6
-4.60
0.60
118.60
114.00
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
6
2.89
0.30
108.30
111.19
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
6
-4.28
0.70
121.90
117.62
B
B
B
N3
C2
O2
DC
DC
DC
20
20
20
N
6
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
6
2.39
0.30
108.30
110.69
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
7
4.54
0.60
106.00
110.54
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
7
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
-4.64
0.70
121.90
117.26
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
7
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
7
2.86
0.30
108.30
111.16
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
7
3.94
0.30
108.30
112.24
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
7
-3.85
0.60
122.90
119.05
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
7
-5.65
0.60
118.60
112.95
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
7
-3.75
0.50
117.00
113.25
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
7
3.48
0.50
117.70
121.18
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
7
-4.16
0.60
118.60
114.44
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
7
3.63
0.60
106.00
109.63
B
B
B
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
7
3.61
0.60
106.00
109.61
B
B
B
O4'
C4'
C3'
DG
DG
DG
16
16
16
N
7
-4.26
0.60
122.90
118.64
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
7
-4.39
0.70
119.90
115.51
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
7
-3.48
0.50
117.00
113.52
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
7
3.67
0.50
117.70
121.37
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
7
4.33
0.30
108.30
112.63
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
7
2.60
0.30
108.30
110.90
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
8
-6.51
0.60
118.60
112.09
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
8
-4.50
0.70
121.90
117.40
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
8
-4.47
0.70
118.00
113.53
A
A
A
N3
C4
N4
DC
DC
DC
7
7
7
N
8
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
8
-3.66
0.50
117.00
113.34
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
8
3.65
0.50
117.70
121.35
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
8
-4.75
0.60
118.60
113.85
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
8
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
8
2.70
0.30
108.30
111.00
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
8
3.84
0.60
106.00
109.84
B
B
B
O4'
C4'
C3'
DC
DC
DC
12
12
12
N
8
3.78
0.60
106.00
109.78
B
B
B
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
8
-4.21
0.70
121.90
117.69
B
B
B
N3
C2
O2
DC
DC
DC
15
15
15
N
8
3.82
0.30
108.30
112.12
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
8
-4.10
0.60
122.90
118.80
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
8
1.87
0.30
108.30
110.17
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
8
-4.29
0.70
119.90
115.61
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
8
-3.59
0.50
117.00
113.41
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
8
3.02
0.50
117.70
120.72
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
8
-4.84
0.60
118.60
113.76
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
8
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
8
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
9
3.75
0.60
106.00
109.75
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
9
3.47
0.30
108.30
111.77
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
-4.51
0.70
121.90
117.39
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
9
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
9
-5.32
0.60
118.60
113.28
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
9
-4.43
0.70
121.90
117.47
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
9
-3.77
0.50
117.00
113.23
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
9
3.88
0.50
117.70
121.58
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
9
-5.10
0.60
118.60
113.50
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
9
3.07
0.30
108.30
111.37
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
9
-3.91
0.60
122.90
118.99
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
9
3.74
0.60
106.00
109.74
B
B
B
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
9
-5.31
0.70
119.90
114.59
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
9
3.43
0.50
117.70
121.13
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
9
-4.02
0.60
118.60
114.58
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
9
4.10
0.30
108.30
112.40
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
9
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
9
4.53
0.30
108.30
112.83
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
10
4.57
0.30
108.30
112.87
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
10
4.18
0.60
106.00
110.18
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
10
-5.34
0.60
118.60
113.26
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
10
-4.89
0.70
121.90
117.01
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
10
-3.69
0.50
117.00
113.31
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
10
3.54
0.50
117.70
121.24
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
10
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
10
4.05
0.60
106.00
110.05
B
B
B
O4'
C4'
C3'
DC
DC
DC
12
12
12
N
10
3.42
0.30
108.30
111.72
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
10
2.79
0.30
108.30
111.09
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
10
-3.51
0.50
117.00
113.49
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
10
3.36
0.50
117.70
121.06
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
10
3.66
0.30
108.30
111.96
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
10
-4.23
0.70
121.90
117.67
B
B
B
N3
C2
O2
DC
DC
DC
20
20
20
N
10
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
10
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
11
4.06
0.60
106.00
110.06
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
11
1.97
0.30
108.30
110.27
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
11
-4.69
0.70
121.90
117.21
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
11
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
11
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
11
3.65
0.60
106.00
109.65
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
11
-5.81
0.60
118.60
112.79
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
11
-4.39
0.70
121.90
117.51
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
11
-3.72
0.50
117.00
113.28
A
A
A
C4
C5
C6
DA
DA
DA
9
9
9
N
11
3.86
0.50
117.70
121.56
A
A
A
C5
C6
N1
DA
DA
DA
9
9
9
N
11
-4.38
0.60
118.60
114.22
A
A
A
N1
C6
N6
DA
DA
DA
9
9
9
N
11
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
11
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
11
2.27
0.30
108.30
110.57
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
11
-3.65
0.60
122.90
119.25
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
11
-4.20
0.70
119.90
115.70
B
B
B
N3
C2
N2
DG
DG
DG
18
18
18
N
11
-3.53
0.50
117.00
113.47
B
B
B
C4
C5
C6
DA
DA
DA
19
19
19
N
11
3.36
0.50
117.70
121.06
B
B
B
C5
C6
N1
DA
DA
DA
19
19
19
N
11
-4.30
0.60
118.60
114.30
B
B
B
N1
C6
N6
DA
DA
DA
19
19
19
N
11
3.00
0.30
108.30
111.30
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
11
2.26
0.30
108.30
110.56
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
11
3.26
0.30
108.30
111.56
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
A
A
C5'
C4'
DC
DC
1
1
0.048
0.007
1.512
1.560
N
minimized average
Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex
1
N
N
2
N
N
3
N
N
covale
1.378
none
A
DA
6
A
N6
DA
6
1_555
A
TBC
23
C
C10
TBC
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
21
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
21
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
21
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
20
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
20
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
20
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
19
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
19
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
18
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
18
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
18
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
17
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
17
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
16
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
16
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
16
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
15
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
15
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
15
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
14
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
14
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
13
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
13
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
13
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
12
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
12
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
12
B
N4
DC
1
1_555
DNA
Benzo[a]pyrene, 7, 8, 9, 10-Tetrahydrobenzo[a]pyrene, DNA
1N8C
PDB
1
1N8C
1N8C
PDB
2
1N8C
1
11
1N8C
1
11
1N8C
A
1
1
11
12
22
1N8C
12
22
1N8C
B
2
1
11
BINDING SITE FOR RESIDUE TBC A 23
A
TBC
23
Software
5
A
DC
5
A
DC
5
5
1_555
A
DA
6
A
DA
6
5
1_555
A
DC
7
A
DC
7
5
1_555
B
DT
17
B
DT
6
5
1_555
B
DG
18
B
DG
7
5
1_555