1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bartalesi, I. Bertini, I. Rosato, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 739 745 10.1021/bi0266028 12534286 Structure and dynamics of reduced Bacillus pasteurii cytochrome c: oxidation state dependent properties and implications for electron transfer processes 2003 GE Chembiochem 1439-4227 3 299 310 10.1002/1439-7633(20020402)3:4<299::AID-CBIC299>3.0.CO;2-0 NMR solution structure, backbone mobility and homology modeling of c-type cytochromes from gram-positive bacteria 2002 10.2210/pdb1n9c/pdb pdb_00001n9c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 7115.937 Cytochrome c-553 soluble part of membrane-anchored cytochrome c 1 man polymer 618.503 HEME C 1 syn non-polymer C553 no no VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sporosarcina Escherichia sample 1474 Sporosarcina pasteurii 562 Escherichia coli C41(DE3) database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-02-04 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Solution structure of the oxidized protein RCSB Y RCSB 2002-11-23 REL REL HEC HEME C structures with the least restraint violations 130 30 2D NOESY 2D TOCSY 3D_15N-separated_NOESY HNHA HNHB 3D-15N-separated_TOCSY 100 mM Pi 7.0 ambient 296 K restrained energy minimization 2 mM cytochrome, 100mM phosphate buffer, pH 7.0 90% H2O/10% D2O 1 mM cytochrome U-15N, 100mM phosphate buffer, pH 7.0 90% H2O/10% D2O Guentert structure solution DYANA 1.5 Bruker collection XwinNMR Guentert refinement DYANA 1.5 800 Bruker AVANCE 500 Bruker AVANCE HEC 93 2 HEC HEC 93 A VAL 22 n 1 VAL 22 A ASP 23 n 2 ASP 23 A ALA 24 n 3 ALA 24 A GLU 25 n 4 GLU 25 A ALA 26 n 5 ALA 26 A VAL 27 n 6 VAL 27 A VAL 28 n 7 VAL 28 A GLN 29 n 8 GLN 29 A GLN 30 n 9 GLN 30 A LYS 31 n 10 LYS 31 A CYS 32 n 11 CYS 32 A ILE 33 n 12 ILE 33 A SER 34 n 13 SER 34 A CYS 35 n 14 CYS 35 A HIS 36 n 15 HIS 36 A GLY 37 n 16 GLY 37 A GLY 38 n 17 GLY 38 A ASP 39 n 18 ASP 39 A LEU 40 n 19 LEU 40 A THR 41 n 20 THR 41 A GLY 42 n 21 GLY 42 A ALA 43 n 22 ALA 43 A SER 44 n 23 SER 44 A ALA 45 n 24 ALA 45 A PRO 46 n 25 PRO 46 A ALA 47 n 26 ALA 47 A ILE 48 n 27 ILE 48 A ASP 49 n 28 ASP 49 A LYS 50 n 29 LYS 50 A ALA 51 n 30 ALA 51 A GLY 52 n 31 GLY 52 A ALA 53 n 32 ALA 53 A ASN 54 n 33 ASN 54 A TYR 55 n 34 TYR 55 A SER 56 n 35 SER 56 A GLU 57 n 36 GLU 57 A GLU 58 n 37 GLU 58 A GLU 59 n 38 GLU 59 A ILE 60 n 39 ILE 60 A LEU 61 n 40 LEU 61 A ASP 62 n 41 ASP 62 A ILE 63 n 42 ILE 63 A ILE 64 n 43 ILE 64 A LEU 65 n 44 LEU 65 A ASN 66 n 45 ASN 66 A GLY 67 n 46 GLY 67 A GLN 68 n 47 GLN 68 A GLY 69 n 48 GLY 69 A GLY 70 n 49 GLY 70 A MET 71 n 50 MET 71 A PRO 72 n 51 PRO 72 A GLY 73 n 52 GLY 73 A GLY 74 n 53 GLY 74 A ILE 75 n 54 ILE 75 A ALA 76 n 55 ALA 76 A LYS 77 n 56 LYS 77 A GLY 78 n 57 GLY 78 A ALA 79 n 58 ALA 79 A GLU 80 n 59 GLU 80 A ALA 81 n 60 ALA 81 A GLU 82 n 61 GLU 82 A ALA 83 n 62 ALA 83 A VAL 84 n 63 VAL 84 A ALA 85 n 64 ALA 85 A ALA 86 n 65 ALA 86 A TRP 87 n 66 TRP 87 A LEU 88 n 67 LEU 88 A ALA 89 n 68 ALA 89 A GLU 90 n 69 GLU 90 A LYS 91 n 70 LYS 91 A LYS 92 n 71 LYS 92 A author_defined_assembly 1 monomeric A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NA HEC 1_555 94.8 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NB HEC 1_555 91.9 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NB HEC 1_555 90.6 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 89.9 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 174.4 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 92.3 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 88.8 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 90.3 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 178.8 A HEC 93 B NC HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 86.8 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 169.6 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 80.6 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 97.4 A HEC 93 B NC HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 94.2 A HEC 93 B ND HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 82.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A A VAL ASP 22 23 -138.55 4 A A LYS LYS 91 92 -125.59 7 A A LYS LYS 91 92 -149.81 8 A A LYS LYS 91 92 -143.35 11 A A LYS LYS 91 92 -146.19 12 A A LYS LYS 91 92 -131.73 13 A A LYS LYS 91 92 -128.47 15 A A LYS LYS 91 92 -145.45 16 A A LYS LYS 91 92 -124.92 17 A A LYS LYS 91 92 -126.37 23 A A LYS LYS 91 92 -148.44 29 A A VAL ASP 22 23 -146.42 29 A A GLU LYS 90 91 -149.98 29 A A LYS LYS 91 92 -107.28 8 A TYR 55 0.081 SIDE CHAIN 1 A GLN 29 -62.37 1.33 1 A GLN 30 -142.73 -8.13 1 A SER 34 -39.40 -38.52 1 A ALA 43 -81.49 -85.31 1 A GLN 68 -170.59 122.16 2 A GLN 29 -61.23 0.76 2 A ALA 43 -76.96 -78.43 3 A GLN 29 -61.04 0.19 3 A ALA 43 -86.68 -84.09 4 A GLN 29 -61.29 0.40 4 A GLN 30 -140.81 -13.43 4 A ALA 43 -81.57 -81.74 4 A ASN 66 -102.50 -60.17 4 A LYS 91 -64.51 4.09 5 A ASP 23 -68.61 97.71 5 A LYS 31 -125.01 -54.61 5 A ALA 43 -82.66 -78.92 5 A ALA 79 -55.10 -6.73 6 A GLN 29 -56.02 -2.32 6 A LYS 31 -129.33 -53.06 6 A ALA 43 -113.56 -72.55 7 A GLN 29 -60.34 1.05 7 A ALA 43 -80.08 -80.37 7 A ASN 66 -94.81 -61.24 7 A LYS 91 -62.64 9.40 8 A GLN 29 -63.93 0.86 8 A ALA 43 -100.73 -76.50 8 A ALA 79 -39.84 -38.94 8 A LYS 91 -68.20 7.62 9 A GLN 29 -57.89 0.46 9 A ALA 43 -80.42 -78.27 10 A GLN 29 -60.37 0.89 10 A ALA 43 -80.16 -80.24 11 A GLN 29 -56.63 -3.88 11 A ALA 43 -101.80 -79.25 11 A ASN 66 -103.40 -62.31 12 A GLN 30 -140.27 -26.61 12 A ALA 43 -79.31 -75.81 12 A LYS 91 -66.93 8.75 13 A GLN 29 -59.08 0.26 13 A ALA 43 -85.24 -77.02 13 A LYS 91 -68.82 7.67 14 A ALA 24 -101.51 -69.86 14 A GLN 29 -59.92 0.83 14 A GLN 30 -140.47 -15.51 14 A SER 34 -38.46 -39.67 14 A ALA 43 -80.59 -82.53 14 A ASN 66 -105.42 -60.77 15 A SER 34 -38.64 -37.38 15 A ALA 43 -108.40 -77.11 15 A ASN 66 -101.78 -61.55 16 A GLN 29 -55.94 -3.23 16 A SER 34 -38.66 -39.22 16 A ALA 43 -114.64 -77.15 17 A GLN 29 -63.18 1.23 17 A SER 34 -38.24 -36.88 17 A ALA 43 -102.56 -77.47 18 A GLN 29 -58.06 0.61 18 A SER 34 -36.09 -38.68 18 A ALA 43 -100.31 -79.78 19 A ALA 43 -103.56 -76.75 20 A GLN 29 -61.91 0.65 20 A ALA 43 -113.07 -73.23 20 A ASN 66 -103.46 -60.95 21 A GLN 30 -144.33 -6.59 21 A SER 34 -37.90 -36.71 21 A ALA 43 -99.00 -80.21 21 A GLN 68 -163.93 116.27 21 A LYS 91 -65.02 13.53 22 A GLN 29 -63.72 0.72 22 A ALA 43 -77.58 -76.16 23 A GLN 30 -142.35 -13.83 23 A ALA 43 -87.46 -81.16 24 A GLN 29 -56.58 -6.96 24 A LYS 31 -129.16 -59.85 24 A ALA 43 -83.12 -71.17 25 A GLN 29 -62.15 0.37 25 A ALA 43 -94.18 -77.66 25 A ASN 66 -105.55 -60.29 26 A ALA 43 -103.39 -70.66 26 A ASN 66 -102.48 -65.46 27 A ALA 43 -83.59 -79.41 28 A GLN 29 -65.85 1.44 28 A ALA 43 -78.66 -77.38 29 A GLN 29 -59.97 0.17 29 A ALA 43 -155.76 -82.00 30 A GLN 30 -140.93 -11.54 30 A ALA 43 -90.10 -76.87 Structure and dynamics of reduced Bacillus pasteurii cytochrome c: oxidation state dependent properties and implications for electron transfer processes 1 N N 2 N N A ASP 23 A ASP 2 HELX_P A CYS 32 A CYS 11 1 1 10 A CYS 32 A CYS 11 HELX_P A GLY 37 A GLY 16 1 2 6 A LYS 50 A LYS 29 HELX_P A TYR 55 A TYR 34 1 3 6 A SER 56 A SER 35 HELX_P A GLY 67 A GLY 46 1 4 12 A GLY 78 A GLY 57 HELX_P A LYS 91 A LYS 70 1 5 14 covale 1.794 none A CYS 32 A SG CYS 11 1_555 A HEC 93 B CAB HEC 1_555 covale 1.804 none A CYS 35 A SG CYS 14 1_555 A HEC 93 B CAC HEC 1_555 metalc 1.978 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 metalc 2.391 A MET 71 A SD MET 50 1_555 A HEC 93 B FE HEC 1_555 ELECTRON TRANSPORT cytochrome c, respiration, electron transfer, redox, ELECTRON TRANSPORT CY553_BACPA UNP 1 22 P82599 VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK 22 92 1N9C 22 92 P82599 A 1 1 71 BINDING SITE FOR RESIDUE HEC A 93 A HEC 93 Software 16 A LYS 31 A LYS 10 16 1_555 A CYS 32 A CYS 11 16 1_555 A CYS 35 A CYS 14 16 1_555 A HIS 36 A HIS 15 16 1_555 A ALA 45 A ALA 24 16 1_555 A PRO 46 A PRO 25 16 1_555 A ILE 48 A ILE 27 16 1_555 A TYR 55 A TYR 34 16 1_555 A ILE 60 A ILE 39 16 1_555 A ILE 63 A ILE 42 16 1_555 A GLN 68 A GLN 47 16 1_555 A GLY 70 A GLY 49 16 1_555 A MET 71 A MET 50 16 1_555 A PRO 72 A PRO 51 16 1_555 A VAL 84 A VAL 63 16 1_555 A LEU 88 A LEU 67 16 1_555