0.008190
0.004729
0.000000
0.000000
0.009457
0.000000
0.000000
0.000000
0.021692
0.00000
0.00000
0.00000
Fedorov, R.
Schlichting, I.
Hartmann, E.
Domratcheva, T.
Fuhrmann, M.
Hegemann, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
122.100
122.100
46.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
N
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
C
Y
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
N
N
105
N
C
N
106
N
C
N
107
S
C
N
108
N
O
N
109
S
C
N
110
N
O
N
111
R
C
N
112
N
O
N
113
N
C
N
114
N
O
N
115
N
P
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
Y
194
N
C
Y
195
N
N
Y
196
N
C
Y
197
N
C
Y
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
S
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
N
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
S
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
S
N
357
N
O
N
358
N
O
N
359
N
O
N
360
N
O
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
R
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
N
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
Y
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
Y
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
US
Biophys.J.
BIOJAU
0030
0006-3495
84
2474
2482
10.1016/S0006-3495(03)75052-8
12668455
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii.
2003
10.2210/pdb1n9l/pdb
pdb_00001n9l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-03-01
ADSC QUANTUM 4
Si111 or Si311 crystals, LN2 cooled
SINGLE WAVELENGTH
M
x-ray
1
0.9393
1.0
ID14-4
ESRF
0.9393
SYNCHROTRON
ESRF BEAMLINE ID14-4
11989.646
putative blue light receptor
residues 17-125
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
18.015
water
108
nat
water
Phot-LOV1
no
no
GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP
FWNLLTVTPIKTPDGRVSKFVGVQVDVTS
GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP
FWNLLTVTPIKTPDGRVSKFVGVQVDVTS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chlamydomonas
Escherichia
Escherichia coli
sample
3055
Chlamydomonas reinhardtii
511693
Escherichia coli BL21
BL21
plasmid
pET16
1
3.59
65.43
VAPOR DIFFUSION, HANGING DROP
7.3
HEPES, ammonium sulfate, PEG8000, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-06-17
1
1
2008-04-28
1
2
2011-07-13
1
3
2017-10-11
1
4
2019-11-06
1
5
2023-10-25
_citation.journal_abbrev
_citation.pdbx_database_id_DOI
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure Of A Flavin-Binding Domain, Lov2, From The Chimeric Phytochrome/Phototropin Photoreceptor Phy3
Photoexcited Structure Of The Plant Photoreceptor Domain, Phy3 Lov2
Crystal structure of the same protein in illuminated state. Data set of a single crystal.
Crystal structure of the same protein in illuminated state. Composite data set.
RCSB
Y
PDBJ
2002-11-25
REL
REL
SO4
SULFATE ION
FMN
FLAVIN MONONUCLEOTIDE
HOH
water
1G28
PDB ENTRY 1G28
PDB
experimental model
SUL
900
2
SO4
SO4
900
A
FMN
500
3
FMN
FMN
500
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
687
4
HOH
HOH
687
A
HOH
689
4
HOH
HOH
689
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
708
4
HOH
HOH
708
A
HOH
710
4
HOH
HOH
710
A
HOH
811
4
HOH
HOH
811
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
816
4
HOH
HOH
816
A
HOH
817
4
HOH
HOH
817
A
HOH
818
4
HOH
HOH
818
A
HOH
819
4
HOH
HOH
819
A
HOH
820
4
HOH
HOH
820
A
HOH
821
4
HOH
HOH
821
A
HOH
822
4
HOH
HOH
822
A
HOH
823
4
HOH
HOH
823
A
HOH
824
4
HOH
HOH
824
A
GLY
17
n
1
GLY
17
A
LEU
18
n
2
LEU
18
A
ARG
19
n
3
ARG
19
A
HIS
20
n
4
HIS
20
A
THR
21
n
5
THR
21
A
PHE
22
n
6
PHE
22
A
VAL
23
n
7
VAL
23
A
VAL
24
n
8
VAL
24
A
ALA
25
n
9
ALA
25
A
ASP
26
n
10
ASP
26
A
ALA
27
n
11
ALA
27
A
THR
28
n
12
THR
28
A
LEU
29
n
13
LEU
29
A
PRO
30
n
14
PRO
30
A
ASP
31
n
15
ASP
31
A
CYS
32
n
16
CYS
32
A
PRO
33
n
17
PRO
33
A
LEU
34
n
18
LEU
34
A
VAL
35
n
19
VAL
35
A
TYR
36
n
20
TYR
36
A
ALA
37
n
21
ALA
37
A
SER
38
n
22
SER
38
A
GLU
39
n
23
GLU
39
A
GLY
40
n
24
GLY
40
A
PHE
41
n
25
PHE
41
A
TYR
42
n
26
TYR
42
A
ALA
43
n
27
ALA
43
A
MET
44
n
28
MET
44
A
THR
45
n
29
THR
45
A
GLY
46
n
30
GLY
46
A
TYR
47
n
31
TYR
47
A
GLY
48
n
32
GLY
48
A
PRO
49
n
33
PRO
49
A
ASP
50
n
34
ASP
50
A
GLU
51
n
35
GLU
51
A
VAL
52
n
36
VAL
52
A
LEU
53
n
37
LEU
53
A
GLY
54
n
38
GLY
54
A
HIS
55
n
39
HIS
55
A
ASN
56
n
40
ASN
56
A
CYS
57
n
41
CYS
57
A
ARG
58
n
42
ARG
58
A
PHE
59
n
43
PHE
59
A
LEU
60
n
44
LEU
60
A
GLN
61
n
45
GLN
61
A
GLY
62
n
46
GLY
62
A
GLU
63
n
47
GLU
63
A
GLY
64
n
48
GLY
64
A
THR
65
n
49
THR
65
A
ASP
66
n
50
ASP
66
A
PRO
67
n
51
PRO
67
A
LYS
68
n
52
LYS
68
A
GLU
69
n
53
GLU
69
A
VAL
70
n
54
VAL
70
A
GLN
71
n
55
GLN
71
A
LYS
72
n
56
LYS
72
A
ILE
73
n
57
ILE
73
A
ARG
74
n
58
ARG
74
A
ASP
75
n
59
ASP
75
A
ALA
76
n
60
ALA
76
A
ILE
77
n
61
ILE
77
A
LYS
78
n
62
LYS
78
A
LYS
79
n
63
LYS
79
A
GLY
80
n
64
GLY
80
A
GLU
81
n
65
GLU
81
A
ALA
82
n
66
ALA
82
A
CYS
83
n
67
CYS
83
A
SER
84
n
68
SER
84
A
VAL
85
n
69
VAL
85
A
ARG
86
n
70
ARG
86
A
LEU
87
n
71
LEU
87
A
LEU
88
n
72
LEU
88
A
ASN
89
n
73
ASN
89
A
TYR
90
n
74
TYR
90
A
ARG
91
n
75
ARG
91
A
LYS
92
n
76
LYS
92
A
ASP
93
n
77
ASP
93
A
GLY
94
n
78
GLY
94
A
THR
95
n
79
THR
95
A
PRO
96
n
80
PRO
96
A
PHE
97
n
81
PHE
97
A
TRP
98
n
82
TRP
98
A
ASN
99
n
83
ASN
99
A
LEU
100
n
84
LEU
100
A
LEU
101
n
85
LEU
101
A
THR
102
n
86
THR
102
A
VAL
103
n
87
VAL
103
A
THR
104
n
88
THR
104
A
PRO
105
n
89
PRO
105
A
ILE
106
n
90
ILE
106
A
LYS
107
n
91
LYS
107
A
THR
108
n
92
THR
108
A
PRO
109
n
93
PRO
109
A
ASP
110
n
94
ASP
110
A
GLY
111
n
95
GLY
111
A
ARG
112
n
96
ARG
112
A
VAL
113
n
97
VAL
113
A
SER
114
n
98
SER
114
A
LYS
115
n
99
LYS
115
A
PHE
116
n
100
PHE
116
A
VAL
117
n
101
VAL
117
A
GLY
118
n
102
GLY
118
A
VAL
119
n
103
VAL
119
A
GLN
120
n
104
GLN
120
A
VAL
121
n
105
VAL
121
A
ASP
122
n
106
ASP
122
A
VAL
123
n
107
VAL
123
A
THR
124
n
108
THR
124
A
SER
125
n
109
SER
125
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA,PQS
2
dimeric
2980
-56
11630
3440
-25
10800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_666
-y+1,-x+1,-z+7/6
crystal symmetry operation
61.0500000000
105.7417018021
53.7833333333
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
30.7333333333
A
O
TYR
36
A
O
TYR
20
A
N
VAL
24
A
N
VAL
8
A
N
ALA
25
A
N
ALA
9
A
O
PHE
116
A
O
PHE
100
A
O
LYS
115
A
O
LYS
99
A
N
ILE
106
A
N
ILE
90
A
O
ASN
99
A
O
ASN
83
A
N
LEU
87
A
N
LEU
71
1
A
SO4
900
B
SO4
1
A
HOH
677
D
HOH
1
A
HOH
678
D
HOH
1
A
HOH
689
D
HOH
1
A
HOH
818
D
HOH
1
A
HOH
822
D
HOH
1
A
ASP
50
-63.72
17.05
1
A
GLU
51
-130.06
-36.92
1
A
CYS
57
-68.59
1.70
0.248
0.232
0.233
0.233
1.9
15.0
804
16142
16142
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1G28
Engh & Huber
1.9
15.0
108
986
36
0
842
32.7
1.9
15.0
1N9L
16467
16142
2.0
2.0
0.068
1
12.8
4.8
98.0
1.9
1.97
3.5
0.351
1
96.6
data collection
ProDC
data reduction
XDS
phasing
AMoRE
refinement
CNS
1.0
data scaling
XDS
Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in the dark state.
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
38
A
SER
22
HELX_P
A
GLY
46
A
GLY
30
1
1
9
A
GLY
48
A
GLY
32
HELX_P
A
LEU
53
A
LEU
37
1
2
6
A
ASN
56
A
ASN
40
HELX_P
A
GLN
61
A
GLN
45
5
3
6
A
ASP
66
A
ASP
50
HELX_P
A
GLY
80
A
GLY
64
1
4
15
ELECTRON TRANSPORT
phototropin, flavin, Electron Transport
Q8LPE0_CHLRE
UNP
1
17
Q8LPE0
GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP
FWNLLTVTPIKTPDGRVSKFVGVQVDVTS
17
125
1N9L
17
125
Q8LPE0
A
1
1
109
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
34
A
LEU
18
A
ALA
37
A
ALA
21
A
THR
21
A
THR
5
A
ASP
26
A
ASP
10
A
VAL
113
A
VAL
97
A
ASP
122
A
ASP
106
A
PRO
96
A
PRO
80
A
LYS
107
A
LYS
91
A
CYS
83
A
CYS
67
A
TYR
90
A
TYR
74
BINDING SITE FOR RESIDUE SO4 A 900
A
SO4
900
Software
4
BINDING SITE FOR RESIDUE FMN A 500
A
FMN
500
Software
20
A
HIS
55
A
HIS
39
4
1_555
A
HIS
55
A
HIS
39
4
10_666
A
HOH
624
D
HOH
4
10_666
A
HOH
624
D
HOH
4
1_555
A
VAL
23
A
VAL
7
20
1_555
A
ASN
56
A
ASN
40
20
1_555
A
CYS
57
A
CYS
41
20
1_555
A
ARG
58
A
ARG
42
20
1_555
A
LEU
60
A
LEU
44
20
1_555
A
GLN
61
A
GLN
45
20
1_555
A
VAL
70
A
VAL
54
20
1_555
A
ARG
74
A
ARG
58
20
1_555
A
ILE
77
A
ILE
61
20
1_555
A
ASN
89
A
ASN
73
20
1_555
A
ASN
99
A
ASN
83
20
1_555
A
LEU
101
A
LEU
85
20
1_555
A
PHE
116
A
PHE
100
20
1_555
A
GLY
118
A
GLY
102
20
1_555
A
GLN
120
A
GLN
104
20
1_555
A
HOH
606
D
HOH
20
1_555
A
HOH
643
D
HOH
20
1_555
A
HOH
685
D
HOH
20
1_555
A
HOH
699
D
HOH
20
1_555
A
HOH
814
D
HOH
20
1_555
179
P 65 2 2