24.91
10.931
0.401
21.666
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1
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1
1
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24.84
11.101
1.792
22.107
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1
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1
1
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25.31
12.492
2.144
22.530
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1
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1
1
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24.60
13.638
1.596
21.843
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1
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1
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26.04
12.829
3.668
22.416
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1
1
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28.90
13.744
3.777
23.437
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1
1
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24.98
13.578
3.891
21.150
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1
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23.53
14.209
2.518
20.860
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1
1
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22.63
13.948
2.049
19.416
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1
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1
1
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21.96
14.719
2.586
18.414
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1
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1
1
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22.86
15.612
3.422
18.629
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1
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1
1
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20.60
14.481
2.182
17.135
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1
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1
1
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20.61
13.517
1.270
16.770
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1
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1
1
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1
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19.87
13.366
0.889
15.471
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1
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1
1
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21.57
12.750
0.681
17.828
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1
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1
1
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1
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21.91
12.992
1.096
19.089
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1
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1
1
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1
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30.94
13.797
5.067
24.382
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2
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1
2
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31.04
15.181
5.123
24.817
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2
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1
2
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31.62
12.712
4.738
25.240
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2
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1
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30.66
13.385
6.518
23.689
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2
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1
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29.25
14.625
7.180
23.223
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1
2
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28.81
14.167
8.103
22.164
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1
2
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27.64
13.377
7.464
21.143
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29.61
13.078
9.044
22.750
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31.59
13.366
10.281
22.227
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28.78
11.850
8.314
22.189
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1
2
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26.82
12.258
8.163
20.652
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1
2
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25.53
11.286
7.441
19.946
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2
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1
2
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25.33
10.432
6.507
20.393
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2
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1
2
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25.18
9.600
5.951
19.486
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2
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1
2
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25.09
10.001
6.613
18.326
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2
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1
2
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24.79
9.551
6.503
16.978
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2
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1
2
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24.65
8.651
5.747
16.480
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2
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1
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24.53
10.137
7.271
16.045
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2
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1
2
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24.85
11.150
8.106
16.436
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2
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1
2
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23.90
11.729
8.844
15.616
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2
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1
2
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25.42
11.672
8.299
17.671
A
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2
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1
2
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25.14
11.018
7.498
18.578
A
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2
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1
2
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1
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33.71
13.430
11.630
23.084
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3
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A
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1
3
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33.76
14.504
11.385
24.036
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3
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A
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1
3
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O
33.49
12.039
11.880
23.525
A
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3
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1
3
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1
O
32.89
13.959
12.889
22.152
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3
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A
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1
3
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O
32.62
15.162
12.647
21.439
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3
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A
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1
3
1.00
1
C
32.54
14.920
13.192
20.053
A
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3
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A
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1
3
1.00
1
C
31.98
13.895
12.288
19.442
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3
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A
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1
3
1.00
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O
32.65
14.383
14.632
19.952
A
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3
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A
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1
3
1.00
1
C
33.91
15.116
15.358
18.994
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3
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A
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1
3
1.00
1
O
31.90
12.897
14.455
19.543
A
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3
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A
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DA
1
3
1.00
1
C
30.25
12.889
13.131
18.723
A
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3
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A
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1
3
1.00
1
C
28.45
11.706
12.371
18.660
A
N9
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3
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A
N9
DA
1
3
1.00
1
N
27.66
10.999
11.880
19.650
A
C8
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3
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A
C8
DA
1
3
1.00
1
C
27.35
9.933
11.169
19.328
A
N7
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3
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A
N7
DA
1
3
1.00
1
N
27.33
10.020
11.188
17.954
A
C5
DA
3
ATOM
A
C5
DA
1
3
1.00
1
C
27.12
9.158
10.609
16.965
A
C6
DA
3
ATOM
A
C6
DA
1
3
1.00
1
C
26.33
8.057
9.850
17.318
A
N6
DA
3
ATOM
A
N6
DA
1
3
1.00
1
N
26.63
9.453
10.859
15.673
A
N1
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3
ATOM
A
N1
DA
1
3
1.00
1
N
26.46
10.538
11.581
15.371
A
C2
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3
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A
C2
DA
1
3
1.00
1
C
27.31
11.415
12.122
16.202
A
N3
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3
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A
N3
DA
1
3
1.00
1
N
27.52
11.078
11.887
17.494
A
C4
DA
3
ATOM
A
C4
DA
1
3
1.00
1
C
36.31
14.719
16.863
18.742
A
P
DT
4
ATOM
A
P
DT
1
4
1.00
1
P
36.47
15.737
17.669
18.194
A
OP1
DT
4
ATOM
A
OP1
DT
1
4
1.00
1
O
36.63
14.016
17.343
20.021
A
OP2
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4
ATOM
A
OP2
DT
1
4
1.00
1
O
35.56
13.759
17.170
17.425
A
O5'
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4
ATOM
A
O5'
DT
1
4
1.00
1
O
35.09
14.239
16.670
16.190
A
C5'
DT
4
ATOM
A
C5'
DT
1
4
1.00
1
C
34.71
12.976
16.822
15.345
A
C4'
DT
4
ATOM
A
C4'
DT
1
4
1.00
1
C
34.09
11.956
15.884
15.831
A
O4'
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4
ATOM
A
O4'
DT
1
4
1.00
1
O
35.19
12.292
18.190
15.503
A
C3'
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4
ATOM
A
C3'
DT
1
4
1.00
1
C
37.14
12.322
18.795
14.255
A
O3'
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4
ATOM
A
O3'
DT
1
4
1.00
1
O
34.35
10.897
17.873
16.013
A
C2'
DT
4
ATOM
A
C2'
DT
1
4
1.00
1
C
32.61
10.674
16.417
15.453
A
C1'
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4
ATOM
A
C1'
DT
1
4
1.00
1
C
30.94
9.653
15.563
16.127
A
N1
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4
ATOM
A
N1
DT
1
4
1.00
1
N
29.93
8.776
14.806
15.383
A
C2
DT
4
ATOM
A
C2
DT
1
4
1.00
1
C
30.29
8.814
14.787
14.167
A
O2
DT
4
ATOM
A
O2
DT
1
4
1.00
1
O
28.91
7.876
14.020
16.070
A
N3
DT
4
ATOM
A
N3
DT
1
4
1.00
1
N
28.34
7.796
13.963
17.457
A
C4
DT
4
ATOM
A
C4
DT
1
4
1.00
1
C
26.05
6.968
13.192
17.967
A
O4
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4
ATOM
A
O4
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1
4
1.00
1
O
29.19
8.700
14.791
18.156
A
C5
DT
4
ATOM
A
C5
DT
1
4
1.00
1
C
29.43
8.798
14.867
19.643
A
C7
DT
4
ATOM
A
C7
DT
1
4
1.00
1
C
29.82
9.611
15.544
17.513
A
C6
DT
4
ATOM
A
C6
DT
1
4
1.00
1
C
38.97
12.092
20.368
14.104
A
P
DC
5
ATOM
A
P
DC
1
5
1.00
1
P
39.08
12.716
20.618
12.850
A
OP1
DC
5
ATOM
A
OP1
DC
1
5
1.00
1
O
38.58
12.383
21.102
15.345
A
OP2
DC
5
ATOM
A
OP2
DC
1
5
1.00
1
O
38.58
10.439
20.565
13.795
A
O5'
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5
ATOM
A
O5'
DC
1
5
1.00
1
O
37.05
10.099
19.748
12.591
A
C5'
DC
5
ATOM
A
C5'
DC
1
5
1.00
1
C
35.22
8.568
19.756
12.516
A
C4'
DC
5
ATOM
A
C4'
DC
1
5
1.00
1
C
33.43
8.163
18.784
13.537
A
O4'
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5
ATOM
A
O4'
DC
1
5
1.00
1
O
34.81
7.925
21.124
12.856
A
C3'
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5
ATOM
A
C3'
DC
1
5
1.00
1
C
34.92
6.666
21.518
12.232
A
O3'
DC
5
ATOM
A
O3'
DC
1
5
1.00
1
O
33.63
7.849
20.909
14.400
A
C2'
DC
5
ATOM
A
C2'
DC
1
5
1.00
1
C
32.05
7.195
19.472
14.318
A
C1'
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5
ATOM
A
C1'
DC
1
5
1.00
1
C
30.66
6.931
18.792
15.616
A
N1
DC
5
ATOM
A
N1
DC
1
5
1.00
1
N
29.60
6.163
17.665
15.534
A
C2
DC
5
ATOM
A
C2
DC
1
5
1.00
1
C
28.41
5.690
17.192
14.507
A
O2
DC
5
ATOM
A
O2
DC
1
5
1.00
1
O
28.73
5.932
17.007
16.738
A
N3
DC
5
ATOM
A
N3
DC
1
5
1.00
1
N
28.53
6.458
17.442
17.948
A
C4
DC
5
ATOM
A
C4
DC
1
5
1.00
1
C
28.33
6.091
16.716
19.026
A
N4
DC
5
ATOM
A
N4
DC
1
5
1.00
1
N
29.22
7.241
18.603
17.992
A
C5
DC
5
ATOM
A
C5
DC
1
5
1.00
1
C
29.74
7.475
19.230
16.820
A
C6
DC
5
ATOM
A
C6
DC
1
5
1.00
1
C
33.89
6.333
22.815
11.350
A
P
DG
6
ATOM
A
P
DG
1
6
1.00
1
P
34.37
7.407
22.716
10.405
A
OP1
DG
6
ATOM
A
OP1
DG
1
6
1.00
1
O
33.70
6.212
23.941
12.320
A
OP2
DG
6
ATOM
A
OP2
DG
1
6
1.00
1
O
31.02
5.051
22.701
10.329
A
O5'
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6
ATOM
A
O5'
DG
1
6
1.00
1
O
26.84
4.700
21.480
9.787
A
C5'
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6
ATOM
A
C5'
DG
1
6
1.00
1
C
24.14
3.248
21.627
9.340
A
C4'
DG
6
ATOM
A
C4'
DG
1
6
1.00
1
C
22.78
2.465
21.245
10.455
A
O4'
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6
ATOM
A
O4'
DG
1
6
1.00
1
O
22.96
2.666
23.023
9.006
A
C3'
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6
ATOM
A
C3'
DG
1
6
1.00
1
C
23.42
1.580
22.777
8.048
A
O3'
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6
ATOM
A
O3'
DG
1
6
1.00
1
O
21.09
2.348
23.597
10.329
A
C2'
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6
ATOM
A
C2'
DG
1
6
1.00
1
C
20.55
1.614
22.342
10.978
A
C1'
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6
ATOM
A
C1'
DG
1
6
1.00
1
C
18.51
1.535
22.304
12.390
A
N9
DG
6
ATOM
A
N9
DG
1
6
1.00
1
N
17.93
2.318
23.049
13.171
A
C8
DG
6
ATOM
A
C8
DG
1
6
1.00
1
C
18.25
2.159
22.833
14.469
A
N7
DG
6
ATOM
A
N7
DG
1
6
1.00
1
N
18.23
1.165
21.862
14.520
A
C5
DG
6
ATOM
A
C5
DG
1
6
1.00
1
C
17.80
0.544
21.245
15.629
A
C6
DG
6
ATOM
A
C6
DG
1
6
1.00
1
C
18.27
0.798
21.408
16.877
A
O6
DG
6
ATOM
A
O6
DG
1
6
1.00
1
O
17.92
-0.401
20.319
15.364
A
N1
DG
6
ATOM
A
N1
DG
1
6
1.00
1
N
17.40
-0.677
20.058
14.035
A
C2
DG
6
ATOM
A
C2
DG
1
6
1.00
1
C
16.37
-1.554
19.192
13.814
A
N2
DG
6
ATOM
A
N2
DG
1
6
1.00
1
N
17.57
-0.159
20.572
12.913
A
N3
DG
6
ATOM
A
N3
DG
1
6
1.00
1
N
18.16
0.775
21.491
13.259
A
C4
DG
6
ATOM
A
C4
DG
1
6
1.00
1
C
22.19
-5.025
14.746
21.263
B
O5'
DC
7
ATOM
B
O5'
DC
1
1
1.00
1
O
22.56
-6.034
14.099
20.519
B
C5'
DC
7
ATOM
B
C5'
DC
1
1
1.00
1
C
23.06
-5.634
14.322
19.057
B
C4'
DC
7
ATOM
B
C4'
DC
1
1
1.00
1
C
22.57
-5.172
15.627
18.780
B
O4'
DC
7
ATOM
B
O4'
DC
1
1
1.00
1
O
24.07
-4.356
13.472
18.711
B
C3'
DC
7
ATOM
B
C3'
DC
1
1
1.00
1
C
26.26
-4.836
12.281
18.093
B
O3'
DC
7
ATOM
B
O3'
DC
1
1
1.00
1
O
22.95
-3.437
14.432
18.043
B
C2'
DC
7
ATOM
B
C2'
DC
1
1
1.00
1
C
21.94
-4.220
15.782
17.816
B
C1'
DC
7
ATOM
B
C1'
DC
1
1
1.00
1
C
21.21
-3.286
16.882
18.181
B
N1
DC
7
ATOM
B
N1
DC
1
1
1.00
1
N
21.25
-2.685
17.559
17.173
B
C2
DC
7
ATOM
B
C2
DC
1
1
1.00
1
C
21.36
-2.855
17.480
15.938
B
O2
DC
7
ATOM
B
O2
DC
1
1
1.00
1
O
20.56
-1.758
18.538
17.538
B
N3
DC
7
ATOM
B
N3
DC
1
1
1.00
1
N
19.94
-1.395
18.780
18.843
B
C4
DC
7
ATOM
B
C4
DC
1
1
1.00
1
C
20.02
-0.480
19.782
18.919
B
N4
DC
7
ATOM
B
N4
DC
1
1
1.00
1
N
19.96
-2.023
18.035
19.845
B
C5
DC
7
ATOM
B
C5
DC
1
1
1.00
1
C
20.43
-2.926
17.143
19.479
B
C6
DC
7
ATOM
B
C6
DC
1
1
1.00
1
C
27.28
-4.038
10.889
17.999
B
P
DG
8
ATOM
B
P
DG
1
2
1.00
1
P
28.64
-4.998
9.865
17.627
B
OP1
DG
8
ATOM
B
OP1
DG
1
2
1.00
1
O
27.64
-3.365
10.753
19.240
B
OP2
DG
8
ATOM
B
OP2
DG
1
2
1.00
1
O
25.57
-2.885
11.003
16.889
B
O5'
DG
8
ATOM
B
O5'
DG
1
2
1.00
1
O
22.51
-3.358
10.912
15.560
B
C5'
DG
8
ATOM
B
C5'
DG
1
2
1.00
1
C
20.72
-1.959
10.825
14.892
B
C4'
DG
8
ATOM
B
C4'
DG
1
2
1.00
1
C
18.96
-1.089
11.808
15.408
B
O4'
DG
8
ATOM
B
O4'
DG
1
2
1.00
1
O
20.67
-1.236
9.434
15.182
B
C3'
DG
8
ATOM
B
C3'
DG
1
2
1.00
1
C
21.54
-0.881
9.116
13.883
B
O3'
DG
8
ATOM
B
O3'
DG
1
2
1.00
1
O
19.78
-0.219
9.872
16.202
B
C2'
DG
8
ATOM
B
C2'
DG
1
2
1.00
1
C
18.56
0.212
11.275
15.679
B
C1'
DG
8
ATOM
B
C1'
DG
1
2
1.00
1
C
17.56
0.923
11.978
16.656
B
N9
DG
8
ATOM
B
N9
DG
1
2
1.00
1
N
17.27
0.790
11.899
17.986
B
C8
DG
8
ATOM
B
C8
DG
1
2
1.00
1
C
16.49
1.626
12.704
18.667
B
N7
DG
8
ATOM
B
N7
DG
1
2
1.00
1
N
16.55
2.306
13.328
17.715
B
C5
DG
8
ATOM
B
C5
DG
1
2
1.00
1
C
16.37
3.323
14.307
17.778
B
C6
DG
8
ATOM
B
C6
DG
1
2
1.00
1
C
16.89
3.804
14.822
18.799
B
O6
DG
8
ATOM
B
O6
DG
1
2
1.00
1
O
16.69
3.823
14.810
16.662
B
N1
DG
8
ATOM
B
N1
DG
1
2
1.00
1
N
17.46
3.308
14.285
15.503
B
C2
DG
8
ATOM
B
C2
DG
1
2
1.00
1
C
18.93
3.739
14.757
14.419
B
N2
DG
8
ATOM
B
N2
DG
1
2
1.00
1
N
17.48
2.363
13.343
15.245
B
N3
DG
8
ATOM
B
N3
DG
1
2
1.00
1
N
17.33
1.913
12.916
16.461
B
C4
DG
8
ATOM
B
C4
DG
1
2
1.00
1
C
20.79
-0.911
7.743
13.070
B
P
DA
9
ATOM
B
P
DA
1
3
1.00
1
P
20.43
-2.253
7.426
12.843
B
OP1
DA
9
ATOM
B
OP1
DA
1
3
1.00
1
O
21.42
-0.087
6.893
13.940
B
OP2
DA
9
ATOM
B
OP2
DA
1
3
1.00
1
O
20.70
-0.280
7.993
11.577
B
O5'
DA
9
ATOM
B
O5'
DA
1
3
1.00
1
O
19.15
-0.397
8.972
10.619
B
C5'
DA
9
ATOM
B
C5'
DA
1
3
1.00
1
C
19.33
0.745
9.400
9.875
B
C4'
DA
9
ATOM
B
C4'
DA
1
3
1.00
1
C
20.08
1.645
10.235
10.594
B
O4'
DA
9
ATOM
B
O4'
DA
1
3
1.00
1
O
20.47
1.792
8.224
9.579
B
C3'
DA
9
ATOM
B
C3'
DA
1
3
1.00
1
C
21.73
2.098
8.609
8.243
B
O3'
DA
9
ATOM
B
O3'
DA
1
3
1.00
1
O
19.68
2.764
8.235
10.732
B
C2'
DA
9
ATOM
B
C2'
DA
1
3
1.00
1
C
19.44
2.908
9.778
11.098
B
C1'
DA
9
ATOM
B
C1'
DA
1
3
1.00
1
C
19.54
3.195
9.974
12.472
B
N9
DA
9
ATOM
B
N9
DA
1
3
1.00
1
N
18.71
2.688
9.358
13.524
B
C8
DA
9
ATOM
B
C8
DA
1
3
1.00
1
C
18.79
3.150
9.729
14.690
B
N7
DA
9
ATOM
B
N7
DA
1
3
1.00
1
N
19.30
4.125
10.628
14.381
B
C5
DA
9
ATOM
B
C5
DA
1
3
1.00
1
C
19.80
5.029
11.388
15.200
B
C6
DA
9
ATOM
B
C6
DA
1
3
1.00
1
C
19.32
5.051
11.324
16.574
B
N6
DA
9
ATOM
B
N6
DA
1
3
1.00
1
N
19.77
5.879
12.266
14.627
B
N1
DA
9
ATOM
B
N1
DA
1
3
1.00
1
N
19.36
5.857
12.341
13.266
B
C2
DA
9
ATOM
B
C2
DA
1
3
1.00
1
C
19.55
5.070
11.668
12.409
B
N3
DA
9
ATOM
B
N3
DA
1
3
1.00
1
N
19.44
4.208
10.833
13.039
B
C4
DA
9
ATOM
B
C4
DA
1
3
1.00
1
C
22.82
3.055
7.830
7.285
B
P
DT
10
ATOM
B
P
DT
1
4
1.00
1
P
23.05
2.779
7.993
5.905
B
OP1
DT
10
ATOM
B
OP1
DT
1
4
1.00
1
O
23.37
3.017
6.420
7.720
B
OP2
DT
10
ATOM
B
OP2
DT
1
4
1.00
1
O
22.30
4.567
8.439
7.443
B
O5'
DT
10
ATOM
B
O5'
DT
1
4
1.00
1
O
22.20
4.923
9.789
7.399
B
C5'
DT
10
ATOM
B
C5'
DT
1
4
1.00
1
C
22.08
6.367
9.902
7.852
B
C4'
DT
10
ATOM
B
C4'
DT
1
4
1.00
1
C
21.87
6.401
9.989
9.245
B
O4'
DT
10
ATOM
B
O4'
DT
1
4
1.00
1
O
22.84
7.411
8.700
7.594
B
C3'
DT
10
ATOM
B
C3'
DT
1
4
1.00
1
C
23.44
8.428
9.297
6.857
B
O3'
DT
10
ATOM
B
O3'
DT
1
4
1.00
1
O
21.92
7.762
8.137
8.949
B
C2'
DT
10
ATOM
B
C2'
DT
1
4
1.00
1
C
21.68
7.600
9.392
9.850
B
C1'
DT
10
ATOM
B
C1'
DT
1
4
1.00
1
C
21.22
7.392
9.135
11.306
B
N1
DT
10
ATOM
B
N1
DT
1
4
1.00
1
N
21.67
7.993
9.914
12.251
B
C2
DT
10
ATOM
B
C2
DT
1
4
1.00
1
C
22.05
8.727
10.855
11.936
B
O2
DT
10
ATOM
B
O2
DT
1
4
1.00
1
O
21.14
7.778
9.596
13.568
B
N3
DT
10
ATOM
B
N3
DT
1
4
1.00
1
N
21.26
6.938
8.575
13.953
B
C4
DT
10
ATOM
B
C4
DT
1
4
1.00
1
C
22.05
6.738
8.341
15.182
B
O4
DT
10
ATOM
B
O4
DT
1
4
1.00
1
O
20.76
6.303
7.781
12.963
B
C5
DT
10
ATOM
B
C5
DT
1
4
1.00
1
C
20.27
5.422
6.624
13.247
B
C7
DT
10
ATOM
B
C7
DT
1
4
1.00
1
C
21.28
6.556
8.099
11.703
B
C6
DT
10
ATOM
B
C6
DT
1
4
1.00
1
C
23.80
9.539
8.806
5.905
B
P
DC
11
ATOM
B
P
DC
1
5
1.00
1
P
24.61
9.831
9.952
5.155
B
OP1
DC
11
ATOM
B
OP1
DC
1
5
1.00
1
O
24.07
9.052
7.524
5.338
B
OP2
DC
11
ATOM
B
OP2
DC
1
5
1.00
1
O
23.87
10.938
8.590
6.724
B
O5'
DC
11
ATOM
B
O5'
DC
1
5
1.00
1
O
23.92
11.630
9.464
7.518
B
C5'
DC
11
ATOM
B
C5'
DC
1
5
1.00
1
C
23.91
12.447
8.768
8.621
B
C4'
DC
11
ATOM
B
C4'
DC
1
5
1.00
1
C
23.78
11.524
8.541
9.718
B
O4'
DC
11
ATOM
B
O4'
DC
1
5
1.00
1
O
24.39
13.113
7.415
8.338
B
C3'
DC
11
ATOM
B
C3'
DC
1
5
1.00
1
C
25.01
14.485
7.271
8.665
B
O3'
DC
11
ATOM
B
O3'
DC
1
5
1.00
1
O
23.67
12.326
6.382
9.151
B
C2'
DC
11
ATOM
B
C2'
DC
1
5
1.00
1
C
23.70
11.778
7.350
10.279
B
C1'
DC
11
ATOM
B
C1'
DC
1
5
1.00
1
C
23.42
10.681
6.662
11.022
B
N1
DC
11
ATOM
B
N1
DC
1
5
1.00
1
N
23.31
10.583
7.146
12.295
B
C2
DC
11
ATOM
B
C2
DC
1
5
1.00
1
C
22.35
11.248
8.042
12.743
B
O2
DC
11
ATOM
B
O2
DC
1
5
1.00
1
O
23.49
9.679
6.507
13.127
B
N3
DC
11
ATOM
B
N3
DC
1
5
1.00
1
N
23.90
8.878
5.414
12.648
B
C4
DC
11
ATOM
B
C4
DC
1
5
1.00
1
C
24.13
8.012
4.885
13.619
B
N4
DC
11
ATOM
B
N4
DC
1
5
1.00
1
N
22.83
8.987
4.934
11.293
B
C5
DC
11
ATOM
B
C5
DC
1
5
1.00
1
C
23.50
9.906
5.573
10.568
B
C6
DC
11
ATOM
B
C6
DC
1
5
1.00
1
C
25.34
15.786
7.630
7.814
B
P
DG
12
ATOM
B
P
DG
1
6
1.00
1
P
25.65
15.525
8.991
7.518
B
OP1
DG
12
ATOM
B
OP1
DG
1
6
1.00
1
O
24.86
16.122
6.545
6.907
B
OP2
DG
12
ATOM
B
OP2
DG
1
6
1.00
1
O
24.59
16.988
7.755
8.892
B
O5'
DG
12
ATOM
B
O5'
DG
1
6
1.00
1
O
23.06
17.370
8.942
9.503
B
C5'
DG
12
ATOM
B
C5'
DG
1
6
1.00
1
C
21.32
18.349
8.572
10.594
B
C4'
DG
12
ATOM
B
C4'
DG
1
6
1.00
1
C
20.82
17.930
7.588
11.533
B
O4'
DG
12
ATOM
B
O4'
DG
1
6
1.00
1
O
21.06
19.635
7.853
10.127
B
C3'
DG
12
ATOM
B
C3'
DG
1
6
1.00
1
C
21.29
20.436
8.477
11.041
B
O3'
DG
12
ATOM
B
O3'
DG
1
6
1.00
1
O
20.19
19.389
6.333
10.279
B
C2'
DG
12
ATOM
B
C2'
DG
1
6
1.00
1
C
19.49
18.674
6.360
11.615
B
C1'
DG
12
ATOM
B
C1'
DG
1
6
1.00
1
C
18.65
17.771
5.286
11.785
B
N9
DG
12
ATOM
B
N9
DG
1
6
1.00
1
N
18.42
17.101
4.670
10.808
B
C8
DG
12
ATOM
B
C8
DG
1
6
1.00
1
C
18.17
16.247
3.747
11.218
B
N7
DG
12
ATOM
B
N7
DG
1
6
1.00
1
N
18.55
16.462
3.800
12.591
B
C5
DG
12
ATOM
B
C5
DG
1
6
1.00
1
C
18.97
15.884
3.059
13.644
B
C6
DG
12
ATOM
B
C6
DG
1
6
1.00
1
C
20.53
15.048
2.151
13.373
B
O6
DG
12
ATOM
B
O6
DG
1
6
1.00
1
O
18.18
16.205
3.301
14.917
B
N1
DG
12
ATOM
B
N1
DG
1
6
1.00
1
N
18.05
17.105
4.246
15.163
B
C2
DG
12
ATOM
B
C2
DG
1
6
1.00
1
C
18.17
17.355
4.443
16.360
B
N2
DG
12
ATOM
B
N2
DG
1
6
1.00
1
N
18.42
17.733
4.998
14.280
B
N3
DG
12
ATOM
B
N3
DG
1
6
1.00
1
N
18.30
17.362
4.722
13.007
B
C4
DG
12
ATOM
B
C4
DG
1
6
1.00
1
C
21.30
10.432
2.216
14.331
A
C1
44D
41
HETATM
C
C1
44D
2
1.00
1
C
20.83
10.050
1.543
13.108
A
C2
44D
41
HETATM
C
C2
44D
2
1.00
1
C
20.92
10.681
1.974
11.936
A
C3
44D
41
HETATM
C
C3
44D
2
1.00
1
C
21.24
11.664
3.002
11.873
A
C4
44D
41
HETATM
C
C4
44D
2
1.00
1
C
21.99
12.980
4.605
13.140
A
C5
44D
41
HETATM
C
C5
44D
2
1.00
1
C
23.44
14.164
6.155
14.369
A
C6
44D
41
HETATM
C
C6
44D
2
1.00
1
C
26.37
15.839
7.596
15.352
A
C7
44D
41
HETATM
C
C7
44D
2
1.00
1
C
27.32
16.088
8.553
16.492
A
C8
44D
41
HETATM
C
C8
44D
2
1.00
1
C
28.23
15.158
8.394
17.734
A
C9
44D
41
HETATM
C
C9
44D
2
1.00
1
C
26.27
14.784
6.840
17.841
A
C10
44D
41
HETATM
C
C10
44D
2
1.00
1
C
22.79
13.143
5.433
16.631
A
C11
44D
41
HETATM
C
C11
44D
2
1.00
1
C
22.08
11.755
3.792
15.528
A
C12
44D
41
HETATM
C
C12
44D
2
1.00
1
C
29.84
15.971
8.810
18.994
A
C13
44D
41
HETATM
C
C13
44D
2
1.00
1
C
30.80
15.941
10.216
19.498
A
C14
44D
41
HETATM
C
C14
44D
2
1.00
1
C
21.59
11.392
3.221
14.299
A
C15
44D
41
HETATM
C
C15
44D
2
1.00
1
C
21.68
12.008
3.615
13.077
A
C16
44D
41
HETATM
C
C16
44D
2
1.00
1
C
22.13
13.264
5.165
14.356
A
C17
44D
41
HETATM
C
C17
44D
2
1.00
1
C
21.98
12.712
4.802
15.528
A
C18
44D
41
HETATM
C
C18
44D
2
1.00
1
C
23.99
14.035
6.409
16.675
A
C19
44D
41
HETATM
C
C19
44D
2
1.00
1
C
24.64
14.587
6.768
15.471
A
C20
44D
41
HETATM
C
C20
44D
2
1.00
1
C
22.91
13.547
5.033
11.961
A
O5
44D
41
HETATM
C
O5
44D
2
1.00
1
O
24.36
14.576
6.390
13.096
A
O6
44D
41
HETATM
C
O6
44D
2
1.00
1
O
29.15
15.706
8.337
14.142
A
O7
44D
41
HETATM
C
O7
44D
2
1.00
1
O
28.59
13.880
9.124
17.765
A
O9
44D
41
HETATM
C
O9
44D
2
1.00
1
O
23.72
12.526
4.968
17.753
A
O11
44D
41
HETATM
C
O11
44D
2
1.00
1
O
22.81
11.116
3.331
16.574
A
O12
44D
41
HETATM
C
O12
44D
2
1.00
1
O
31.13
16.912
7.846
19.473
A
O13
44D
41
HETATM
C
O13
44D
2
1.00
1
O
31.75
16.935
10.488
20.589
A
O14
44D
41
HETATM
C
O14
44D
2
1.00
1
O
30.37
15.358
9.668
13.757
A
C1B
44D
41
HETATM
C
C1B
44D
2
1.00
1
C
30.87
14.701
10.008
12.390
A
C2B
44D
41
HETATM
C
C2B
44D
2
1.00
1
C
31.87
13.430
10.810
12.648
A
C3B
44D
41
HETATM
C
C3B
44D
2
1.00
1
C
32.84
13.861
12.050
13.474
A
C4B
44D
41
HETATM
C
C4B
44D
2
1.00
1
C
32.59
14.950
11.884
14.520
A
C5B
44D
41
HETATM
C
C5B
44D
2
1.00
1
C
33.17
15.778
13.203
14.677
A
C6B
44D
41
HETATM
C
C6B
44D
2
1.00
1
C
31.01
12.602
11.165
11.482
A
O3'
44D
41
HETATM
C
O3'
44D
2
1.00
1
O
35.02
14.217
13.052
12.484
A
O4B
44D
41
HETATM
C
O4B
44D
2
1.00
1
O
31.29
15.956
10.855
14.268
A
O5B
44D
41
HETATM
C
O5B
44D
2
1.00
1
O
35.84
13.986
14.493
12.642
A
C1'
44D
41
HETATM
C
C1'
44D
2
1.00
1
C
36.04
14.950
15.226
11.690
A
C2'
44D
41
HETATM
C
C2'
44D
2
1.00
1
C
36.75
14.621
14.557
10.316
A
C3'
44D
41
HETATM
C
C3'
44D
2
1.00
1
C
37.39
13.135
13.971
10.392
A
C4'
44D
41
HETATM
C
C4'
44D
2
1.00
1
C
36.87
12.201
15.075
10.978
A
C5'
44D
41
HETATM
C
C5'
44D
2
1.00
1
C
36.57
12.413
16.519
10.613
A
C6'
44D
41
HETATM
C
C6'
44D
2
1.00
1
C
37.58
12.636
13.139
9.251
A
O4'
44D
41
HETATM
C
O4'
44D
2
1.00
1
O
36.37
12.568
14.931
12.396
A
O5'
44D
41
HETATM
C
O5'
44D
2
1.00
1
O
36.67
14.958
15.392
9.188
A
N3'
44D
41
HETATM
C
N3'
44D
2
1.00
1
N
19.44
2.560
18.262
20.318
B
C1
44D
40
HETATM
D
C1
44D
2
1.00
1
C
19.97
3.535
19.117
20.992
B
C2
44D
40
HETATM
D
C2
44D
2
1.00
1
C
19.79
4.337
19.899
20.160
B
C3
44D
40
HETATM
D
C3
44D
2
1.00
1
C
19.61
4.220
19.873
18.755
B
C4
44D
40
HETATM
D
C4
44D
2
1.00
1
C
18.30
3.161
18.992
16.776
B
C5
44D
40
HETATM
D
C5
44D
2
1.00
1
C
17.08
2.125
18.039
14.860
B
C6
44D
40
HETATM
D
C6
44D
2
1.00
1
C
18.12
1.085
17.230
12.825
B
C7
44D
40
HETATM
D
C7
44D
2
1.00
1
C
17.64
0.064
16.217
12.327
B
C8
44D
40
HETATM
D
C8
44D
2
1.00
1
C
17.63
0.076
14.886
13.020
B
C9
44D
40
HETATM
D
C9
44D
2
1.00
1
C
17.34
-0.423
15.234
14.488
B
C10
44D
40
HETATM
D
C10
44D
2
1.00
1
C
17.05
0.518
16.394
16.461
B
C11
44D
40
HETATM
D
C11
44D
2
1.00
1
C
18.49
1.573
17.381
18.389
B
C12
44D
40
HETATM
D
C12
44D
2
1.00
1
C
17.63
-1.032
14.031
12.327
B
C13
44D
40
HETATM
D
C13
44D
2
1.00
1
C
17.63
-0.794
12.610
12.018
B
C14
44D
40
HETATM
D
C14
44D
2
1.00
1
C
18.81
2.492
18.281
18.925
B
C15
44D
40
HETATM
D
C15
44D
2
1.00
1
C
18.64
3.259
19.068
18.143
B
C16
44D
40
HETATM
D
C16
44D
2
1.00
1
C
17.65
2.238
18.111
16.234
B
C17
44D
40
HETATM
D
C17
44D
2
1.00
1
C
17.51
1.422
17.275
17.009
B
C18
44D
40
HETATM
D
C18
44D
2
1.00
1
C
17.16
0.386
16.345
15.068
B
C19
44D
40
HETATM
D
C19
44D
2
1.00
1
C
17.27
1.183
17.162
14.324
B
C20
44D
40
HETATM
D
C20
44D
2
1.00
1
C
18.80
4.015
19.729
16.032
B
O5
44D
40
HETATM
D
O5
44D
2
1.00
1
O
16.76
2.945
18.829
14.098
B
O6
44D
40
HETATM
D
O6
44D
2
1.00
1
O
20.30
2.310
17.067
12.232
B
O7
44D
40
HETATM
D
O7
44D
2
1.00
1
O
17.97
1.304
14.111
12.787
B
O9
44D
40
HETATM
D
O9
44D
2
1.00
1
O
16.63
-0.295
15.563
17.230
B
O11
44D
40
HETATM
D
O11
44D
2
1.00
1
O
19.62
0.934
16.693
19.297
B
O12
44D
40
HETATM
D
O12
44D
2
1.00
1
O
17.90
-2.272
14.519
12.446
B
O13
44D
40
HETATM
D
O13
44D
2
1.00
1
O
17.45
-1.989
11.933
11.558
B
O14
44D
40
HETATM
D
O14
44D
2
1.00
1
O
22.48
2.892
17.812
11.218
B
C1B
44D
40
HETATM
D
C1B
44D
2
1.00
1
C
23.45
4.363
17.657
10.940
B
C2B
44D
40
HETATM
D
C2B
44D
2
1.00
1
C
24.90
4.371
16.239
10.348
B
C3B
44D
40
HETATM
D
C3B
44D
2
1.00
1
C
25.21
3.671
16.239
8.980
B
C4B
44D
40
HETATM
D
C4B
44D
2
1.00
1
C
24.53
2.201
16.557
9.289
B
C5B
44D
40
HETATM
D
C5B
44D
2
1.00
1
C
23.74
1.312
16.508
8.079
B
C6B
44D
40
HETATM
D
C6B
44D
2
1.00
1
C
25.99
5.792
15.687
10.184
B
O3'
44D
40
HETATM
D
O3'
44D
2
1.00
1
O
26.88
4.235
17.117
8.029
B
O4B
44D
40
HETATM
D
O4B
44D
2
1.00
1
O
23.63
2.174
17.824
9.989
B
O5B
44D
40
HETATM
D
O5B
44D
2
1.00
1
O
28.18
4.946
17.154
6.882
B
C1'
44D
40
HETATM
D
C1'
44D
2
1.00
1
C
28.67
4.677
18.447
6.170
B
C2'
44D
40
HETATM
D
C2'
44D
2
1.00
1
C
29.62
5.781
19.412
6.378
B
C3'
44D
40
HETATM
D
C3'
44D
2
1.00
1
C
30.17
7.267
18.954
6.516
B
C4'
44D
40
HETATM
D
C4'
44D
2
1.00
1
C
29.79
7.248
17.672
7.405
B
C5'
44D
40
HETATM
D
C5'
44D
2
1.00
1
C
29.98
8.670
17.283
7.783
B
C6'
44D
40
HETATM
D
C6'
44D
2
1.00
1
C
31.25
8.209
18.792
5.401
B
O4'
44D
40
HETATM
D
O4'
44D
2
1.00
1
O
29.39
6.348
16.754
6.794
B
O5'
44D
40
HETATM
D
O5'
44D
2
1.00
1
O
30.38
5.766
20.308
5.212
B
N3'
44D
40
HETATM
D
N3'
44D
2
1.00
1
N
51.19
21.457
14.542
17.123
A
O
HOH
42
HETATM
E
O
HOH
3
1.00
1
O
46.64
7.717
16.617
12.270
A
O
HOH
43
HETATM
E
O
HOH
3
1.00
1
O
42.80
10.194
5.093
23.903
A
O
HOH
44
HETATM
E
O
HOH
3
1.00
1
O
32.31
10.938
1.853
26.179
A
O
HOH
45
HETATM
E
O
HOH
3
1.00
1
O
29.23
6.564
16.863
22.215
A
O
HOH
46
HETATM
E
O
HOH
3
1.00
1
O
45.19
17.801
16.444
22.095
A
O
HOH
47
HETATM
E
O
HOH
3
1.00
1
O
50.10
11.721
15.873
24.023
A
O
HOH
48
HETATM
E
O
HOH
3
1.00
1
O
26.33
7.687
15.075
23.891
A
O
HOH
49
HETATM
E
O
HOH
3
1.00
1
O
48.30
11.940
12.776
6.699
A
O
HOH
50
HETATM
E
O
HOH
3
1.00
1
O
38.84
18.599
15.873
3.750
A
O
HOH
51
HETATM
E
O
HOH
3
1.00
1
O
42.45
18.863
16.232
17.746
A
O
HOH
52
HETATM
E
O
HOH
3
1.00
1
O
46.61
-3.289
18.425
10.480
A
O
HOH
53
HETATM
E
O
HOH
3
1.00
1
O
31.07
17.090
12.114
8.489
B
O
HOH
41
HETATM
F
O
HOH
3
1.00
1
O
31.37
11.812
2.669
6.888
B
O
HOH
42
HETATM
F
O
HOH
3
1.00
1
O
35.48
-6.178
7.010
14.721
B
O
HOH
43
HETATM
F
O
HOH
3
1.00
1
O
44.32
-3.240
0.484
13.436
B
O
HOH
44
HETATM
F
O
HOH
3
1.00
1
O
24.09
-4.826
8.653
11.274
B
O
HOH
45
HETATM
F
O
HOH
3
1.00
1
O
27.43
3.845
14.523
21.553
B
O
HOH
46
HETATM
F
O
HOH
3
1.00
1
O
40.08
19.627
10.239
14.003
B
O
HOH
47
HETATM
F
O
HOH
3
1.00
1
O
46.36
10.027
1.860
3.851
B
O
HOH
48
HETATM
F
O
HOH
3
1.00
1
O
32.38
-0.378
20.402
22.278
B
O
HOH
49
HETATM
F
O
HOH
3
1.00
1
O
32.15
9.655
12.736
10.833
B
O
HOH
50
HETATM
F
O
HOH
3
1.00
1
O
34.01
20.451
5.891
6.504
B
O
HOH
51
HETATM
F
O
HOH
3
1.00
1
O
30.03
8.840
12.863
9.031
B
O
HOH
52
HETATM
F
O
HOH
3
1.00
1
O
39.05
3.100
8.674
18.049
B
O
HOH
53
HETATM
F
O
HOH
3
1.00
1
O
50.15
14.239
4.140
6.006
B
O
HOH
54
HETATM
F
O
HOH
3
1.00
1
O
56.32
18.909
12.439
11.230
B
O
HOH
55
HETATM
F
O
HOH
3
1.00
1
O
47.97
9.596
13.313
5.665
B
O
HOH
56
HETATM
F
O
HOH
3
1.00
1
O
25.04
5.902
12.923
9.755
B
O
HOH
57
HETATM
F
O
HOH
3
1.00
1
O
43.97
13.646
21.245
5.098
B
O
HOH
58
HETATM
F
O
HOH
3
1.00
1
O
41.02
2.080
5.622
16.341
B
O
HOH
59
HETATM
F
O
HOH
3
1.00
1
O
37.62
4.729
6.925
16.946
B
O
HOH
60
HETATM
F
O
HOH
3
1.00
1
O
39.31
6.087
22.905
17.620
B
O
HOH
61
HETATM
F
O
HOH
3
1.00
1
O
57.70
15.060
2.216
8.495
B
O
HOH
62
HETATM
F
O
HOH
3
1.00
1
O
18.03
18.171
4.662
7.367
B
O
HOH
63
HETATM
F
O
HOH
3
1.00
1
O
0.026446
0.000000
0.000000
0.000000
0.026446
0.000000
0.000000
0.000000
0.015868
0.00000
0.00000
0.00000
Temperini, C.
Messori, L.
Orioli, P.
Di Bugno, C.
Animati, F.
Ughetto, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
37.813
37.813
63.020
C32 H37 N O13
643.635
7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE
4'-(O-ALPHA-L-DAUNOSAMINYL)-4-DEMETHOXYDOXORUBICIN
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
N
5
N
C
Y
6
N
C
N
7
S
C
N
8
N
C
N
9
S
C
N
10
N
C
Y
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
N
21
N
O
N
22
N
O
N
23
N
O
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
O
N
28
N
O
N
29
R
C
N
30
N
C
N
31
S
C
N
32
S
C
N
33
S
C
N
34
N
C
N
35
N
O
N
36
N
O
N
37
N
O
N
38
S
C
N
39
N
C
N
40
S
C
N
41
S
C
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
O
N
46
N
N
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
O
N
85
N
P
N
86
N
O
N
87
N
O
N
88
N
O
N
89
N
C
N
90
R
C
N
91
N
O
N
92
S
C
N
93
N
O
N
94
N
C
N
95
R
C
Y
96
N
N
Y
97
N
C
Y
98
N
N
Y
99
N
C
Y
100
N
C
N
101
N
N
Y
102
N
N
Y
103
N
C
Y
104
N
N
Y
105
N
C
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
O
N
121
N
P
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
C
N
126
R
C
N
127
N
O
N
128
S
C
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
N
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
N
C
N
165
R
C
Y
166
N
N
Y
167
N
C
Y
168
N
N
Y
169
N
C
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
N
Y
176
N
C
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
P
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
C
N
197
R
C
N
198
N
O
N
199
S
C
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
N
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
O
N
228
N
H
N
229
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
Y
29
N
doub
Y
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
N
39
N
sing
Y
40
N
doub
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
doub
N
121
N
sing
N
122
N
sing
Y
123
N
sing
Y
124
N
doub
N
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
sing
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
doub
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
31
1464
1469
10.1093/nar/gkg245
12595554
The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes
2003
US
Biochemistry
BICHAW
0033
0006-2960
29
2538
2549
Structural comparison of anticancer drug-dna complexes: adriamycin and daunomycin
1990
10.2210/pdb1nab/pdb
pdb_00001nab
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2001-03-27
MARRESEARCH
Si 111 Channel
SINGLE WAVELENGTH
M
x-ray
1
1.03
1.0
5.2R
ELETTRA
1.03
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
1809.217
5'-D(*CP*GP*AP*TP*CP*G)-3'
2
syn
polymer
643.635
7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE
2
syn
non-polymer
18.015
water
35
nat
water
no
no
(DC)(DG)(DA)(DT)(DC)(DG)
CGATCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1
3.11
60.49
VAPOR DIFFUSION, HANGING DROP
6.5
magnesium chloride, cacodylate, spermine hydrochloride, MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
magnesium chloride
1
cacodylate
1
spermine hydrochloride
1
MPD
1
magnesium chloride
2
MPD
2
10.799
1
19
A
1
B
12
-4.238
A_DC1:DG12_B
1
1.895
0.118
0.210
-0.047
-27.109
1
19
A
2
B
11
2.793
A_DG2:DC11_B
2
-3.273
-0.518
-0.372
0.159
-10.264
1
20
A
3
B
10
-6.113
A_DA3:DT10_B
3
-14.101
0.036
-0.303
-0.013
0.178
1
20
A
4
B
9
-3.415
A_DT4:DA9_B
4
-4.705
-0.210
0.060
0.125
12.828
1
19
A
5
B
8
-1.980
A_DC5:DG8_B
5
7.737
0.226
-0.444
0.050
-2.753
1
19
A
6
B
7
-0.927
A_DG6:DC7_B
6
-1.135
-0.023
0.176
0.132
7.406
36.138
A
A
1
2
1.835
B
B
12
11
7.308
1.137
1.275
1.096
AA_DC1DG2:DC11DG12_BB
1
2.460
-3.969
36.039
1.406
-1.274
3.243
34.009
A
A
2
3
-2.161
B
B
11
10
3.056
-1.260
-1.945
0.959
AA_DG2DA3:DT10DC11_BB
2
-4.481
7.683
33.698
1.835
2.633
3.130
28.614
A
A
3
4
1.383
B
B
10
9
3.156
0.683
0.135
-0.624
AA_DA3DT4:DA9DT10_BB
3
-1.434
2.903
28.571
-1.412
-0.585
3.515
33.994
A
A
4
5
6.269
B
B
9
8
3.136
3.630
1.662
1.084
AA_DT4DC5:DG8DA9_BB
4
7.525
-12.997
32.981
1.256
-1.600
7.026
30.953
A
A
5
6
-0.008
B
B
8
7
6.939
-0.004
-1.104
0.920
AA_DC5DG6:DC7DG8_BB
5
-4.851
9.126
30.579
1.726
0.055
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Data collection
Database references
Derived calculations
1
0
2003-02-25
1
1
2008-04-28
1
2
2011-07-13
1
3
2012-02-08
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2002-11-27
REL
REL
44D
7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE
HOH
water
automatic synthesis
sample
MEN
14
2
44D
44D
41
A
MEN
13
2
44D
44D
40
B
HOH
6
3
HOH
HOH
42
A
HOH
8
3
HOH
HOH
43
A
HOH
10
3
HOH
HOH
44
A
HOH
11
3
HOH
HOH
45
A
HOH
12
3
HOH
HOH
46
A
HOH
13
3
HOH
HOH
47
A
HOH
17
3
HOH
HOH
48
A
HOH
18
3
HOH
HOH
49
A
HOH
26
3
HOH
HOH
50
A
HOH
29
3
HOH
HOH
51
A
HOH
30
3
HOH
HOH
52
A
HOH
31
3
HOH
HOH
53
A
HOH
1
3
HOH
HOH
41
B
HOH
2
3
HOH
HOH
42
B
HOH
3
3
HOH
HOH
43
B
HOH
5
3
HOH
HOH
44
B
HOH
7
3
HOH
HOH
45
B
HOH
9
3
HOH
HOH
46
B
HOH
14
3
HOH
HOH
47
B
HOH
15
3
HOH
HOH
48
B
HOH
16
3
HOH
HOH
49
B
HOH
20
3
HOH
HOH
50
B
HOH
21
3
HOH
HOH
51
B
HOH
22
3
HOH
HOH
52
B
HOH
23
3
HOH
HOH
53
B
HOH
24
3
HOH
HOH
54
B
HOH
25
3
HOH
HOH
55
B
HOH
27
3
HOH
HOH
56
B
HOH
28
3
HOH
HOH
57
B
HOH
33
3
HOH
HOH
58
B
HOH
34
3
HOH
HOH
59
B
HOH
35
3
HOH
HOH
60
B
HOH
36
3
HOH
HOH
61
B
HOH
37
3
HOH
HOH
62
B
HOH
38
3
HOH
HOH
63
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
A
9
n
3
DA
9
B
T
10
n
4
DT
10
B
C
11
n
5
DC
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C1B
44D
41
WRONG HAND
1
B
B
O
O
HOH
HOH
50
52
1.98
1
-5.06
0.40
104.50
99.44
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
11.14
1.10
109.80
120.94
A
A
A
C5'
C4'
O4'
DC
DC
DC
1
1
1
N
1
3.52
0.30
108.30
111.82
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
4.70
0.50
119.90
124.60
A
A
A
C2
N3
C4
DC
DC
DC
1
1
1
N
1
-5.07
0.40
121.90
116.83
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
3.81
0.60
118.90
122.71
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
12.74
1.90
104.00
116.74
A
A
A
O3'
P
O5'
DC
DG
DG
1
2
2
Y
1
-5.20
0.80
109.40
104.20
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-12.58
1.60
120.90
108.32
A
A
A
P
O5'
C5'
DG
DG
DG
2
2
2
N
1
-5.78
0.40
104.50
98.72
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
1
7.27
0.70
110.30
117.57
A
A
A
C1'
O4'
C4'
DG
DG
DG
2
2
2
N
1
-4.45
0.70
102.20
97.75
A
A
A
C4'
C3'
C2'
DG
DG
DG
2
2
2
N
1
-20.81
0.80
105.90
85.09
A
A
A
O4'
C1'
C2'
DG
DG
DG
2
2
2
N
1
9.81
0.30
108.30
118.11
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-6.87
0.60
125.10
118.23
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
5.30
0.60
123.90
129.20
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
6.87
0.50
111.50
118.37
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-3.58
0.50
104.30
100.72
A
A
A
C5
N7
C8
DG
DG
DG
2
2
2
N
1
3.95
0.50
113.10
117.05
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
-2.94
0.40
106.40
103.46
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
-10.23
0.70
119.90
109.67
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-7.86
0.60
119.90
112.04
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-3.25
0.50
103.90
100.65
A
A
A
C5
N7
C8
DA
DA
DA
3
3
3
N
1
3.09
0.50
113.80
116.89
A
A
A
N7
C8
N9
DA
DA
DA
3
3
3
N
1
12.70
1.90
104.00
116.70
A
A
A
O3'
P
O5'
DA
DT
DT
3
4
4
Y
1
-15.50
0.90
105.70
90.20
A
A
A
O5'
P
OP1
DT
DT
DT
4
4
4
N
1
-9.78
0.80
109.40
99.62
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
-8.85
0.80
105.90
97.05
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
1
3.69
0.60
118.00
121.69
A
A
A
C4
C5
C6
DT
DT
DT
4
4
4
N
1
5.44
0.60
119.00
124.44
A
A
A
C4
C5
C7
DT
DT
DT
4
4
4
N
1
-9.12
0.60
122.90
113.78
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
-13.11
1.60
120.90
107.79
A
A
A
P
O5'
C5'
DC
DC
DC
5
5
5
N
1
-5.56
0.70
102.20
96.64
A
A
A
C4'
C3'
C2'
DC
DC
DC
5
5
5
N
1
-7.00
0.80
102.40
95.40
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
-5.14
0.80
105.90
100.76
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
3.95
0.30
108.30
112.25
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
6.94
0.60
118.90
125.84
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
4.71
0.70
120.20
124.91
A
A
A
C5
C4
N4
DC
DC
DC
5
5
5
N
1
9.55
1.20
119.70
129.25
A
A
A
C3'
O3'
P
DC
DC
DG
5
5
6
Y
1
12.60
1.90
104.00
116.60
A
A
A
O3'
P
O5'
DC
DG
DG
5
6
6
Y
1
-5.91
0.90
105.70
99.79
A
A
A
O5'
P
OP1
DG
DG
DG
6
6
6
N
1
-2.65
0.40
104.50
101.85
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
1
-5.84
0.80
105.90
100.06
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-7.83
0.60
125.10
117.27
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
7.11
0.60
123.90
131.01
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
-3.65
0.50
111.90
108.25
A
A
A
C2
N3
C4
DG
DG
DG
6
6
6
N
1
5.46
0.50
111.50
116.96
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-7.03
0.70
119.90
112.87
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-5.28
0.60
119.90
114.62
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
-4.94
0.80
109.40
104.46
B
B
B
O5'
C5'
C4'
DC
DC
DC
7
7
7
N
1
-3.52
0.40
104.50
100.98
B
B
B
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
1
7.88
0.70
110.30
118.18
B
B
B
C1'
O4'
C4'
DC
DC
DC
7
7
7
N
1
-7.41
0.80
105.90
98.49
B
B
B
O4'
C1'
C2'
DC
DC
DC
7
7
7
N
1
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
3.21
0.50
119.90
123.11
B
B
B
C2
N3
C4
DC
DC
DC
7
7
7
N
1
-4.02
0.40
121.90
117.88
B
B
B
N3
C4
C5
DC
DC
DC
7
7
7
N
1
3.74
0.50
121.00
124.74
B
B
B
C5
C6
N1
DC
DC
DC
7
7
7
N
1
11.16
0.60
118.90
130.06
B
B
B
N1
C2
O2
DC
DC
DC
7
7
7
N
1
-8.76
0.70
121.90
113.14
B
B
B
N3
C2
O2
DC
DC
DC
7
7
7
N
1
-6.88
0.70
118.00
111.12
B
B
B
N3
C4
N4
DC
DC
DC
7
7
7
N
1
10.75
0.70
120.20
130.95
B
B
B
C5
C4
N4
DC
DC
DC
7
7
7
N
1
-13.28
0.80
109.40
96.12
B
B
B
O5'
C5'
C4'
DG
DG
DG
8
8
8
N
1
-7.42
0.80
105.90
98.48
B
B
B
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
1
5.73
0.30
108.30
114.03
B
B
B
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
-9.93
0.60
125.10
115.17
B
B
B
C6
N1
C2
DG
DG
DG
8
8
8
N
1
9.44
0.60
123.90
133.34
B
B
B
N1
C2
N3
DG
DG
DG
8
8
8
N
1
-5.82
0.50
111.90
106.08
B
B
B
C2
N3
C4
DG
DG
DG
8
8
8
N
1
8.37
0.50
111.50
119.87
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
-10.35
0.70
119.90
109.55
B
B
B
N3
C2
N2
DG
DG
DG
8
8
8
N
1
-6.94
0.60
119.90
112.96
B
B
B
N1
C6
O6
DG
DG
DG
8
8
8
N
1
12.46
1.20
119.70
132.16
B
B
B
C3'
O3'
P
DG
DG
DA
8
8
9
Y
1
14.35
1.60
120.90
135.25
B
B
B
P
O5'
C5'
DA
DA
DA
9
9
9
N
1
-8.14
0.40
104.50
96.36
B
B
B
O4'
C4'
C3'
DA
DA
DA
9
9
9
N
1
12.90
0.70
110.30
123.20
B
B
B
C1'
O4'
C4'
DA
DA
DA
9
9
9
N
1
-7.37
0.80
105.90
98.53
B
B
B
O4'
C1'
C2'
DA
DA
DA
9
9
9
N
1
10.05
0.30
108.30
118.35
B
B
B
O4'
C1'
N9
DA
DA
DA
9
9
9
N
1
-3.53
0.40
104.50
100.97
B
B
B
O4'
C4'
C3'
DT
DT
DT
10
10
10
N
1
-5.85
0.80
105.90
100.05
B
B
B
O4'
C1'
C2'
DT
DT
DT
10
10
10
N
1
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
-4.80
0.60
127.20
122.40
B
B
B
C2
N3
C4
DT
DT
DT
10
10
10
N
1
4.32
0.60
115.20
119.52
B
B
B
N3
C4
C5
DT
DT
DT
10
10
10
N
1
-4.72
0.70
124.90
120.18
B
B
B
C5
C4
O4
DT
DT
DT
10
10
10
N
1
5.70
0.60
119.00
124.70
B
B
B
C4
C5
C7
DT
DT
DT
10
10
10
N
1
-3.98
0.60
122.90
118.92
B
B
B
C6
C5
C7
DT
DT
DT
10
10
10
N
1
16.09
1.20
119.70
135.79
B
B
B
C3'
O3'
P
DT
DT
DC
10
10
11
Y
1
10.28
0.30
108.30
118.58
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-3.60
0.50
117.40
113.80
B
B
B
C4
C5
C6
DC
DC
DC
11
11
11
N
1
3.97
0.50
121.00
124.97
B
B
B
C5
C6
N1
DC
DC
DC
11
11
11
N
1
5.98
0.60
118.90
124.88
B
B
B
N1
C2
O2
DC
DC
DC
11
11
11
N
1
-4.44
0.70
118.00
113.56
B
B
B
N3
C4
N4
DC
DC
DC
11
11
11
N
1
4.62
0.70
120.20
124.82
B
B
B
C5
C4
N4
DC
DC
DC
11
11
11
N
1
-8.11
1.10
118.80
110.69
B
B
B
C2
N1
C1'
DC
DC
DC
11
11
11
N
1
10.33
1.20
119.70
130.03
B
B
B
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
9.39
1.50
119.60
128.99
B
B
B
OP1
P
OP2
DG
DG
DG
12
12
12
N
1
-7.45
0.40
104.50
97.05
B
B
B
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
1
7.24
1.10
109.80
117.04
B
B
B
C5'
C4'
O4'
DG
DG
DG
12
12
12
N
1
8.10
0.70
110.30
118.40
B
B
B
C1'
O4'
C4'
DG
DG
DG
12
12
12
N
1
-15.50
2.50
109.70
94.20
B
B
B
C4'
C3'
O3'
DG
DG
DG
12
12
12
N
1
-7.16
0.60
125.10
117.94
B
B
B
C6
N1
C2
DG
DG
DG
12
12
12
N
1
-5.19
0.60
118.80
113.61
B
B
B
C4
C5
C6
DG
DG
DG
12
12
12
N
1
9.68
0.50
111.50
121.18
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
1
4.80
0.40
110.80
115.60
B
B
B
C4
C5
N7
DG
DG
DG
12
12
12
N
1
-3.95
0.50
104.30
100.35
B
B
B
C5
N7
C8
DG
DG
DG
12
12
12
N
1
-3.90
0.40
105.40
101.50
B
B
B
N9
C4
C5
DG
DG
DG
12
12
12
N
1
4.93
0.60
126.00
130.93
B
B
B
N3
C4
N9
DG
DG
DG
12
12
12
N
1
-9.38
0.60
128.60
119.22
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
A
A
O3'
C3'
DC
DC
1
1
-0.044
0.006
1.419
1.375
N
1
A
A
P
O5'
DG
DG
2
2
0.067
0.010
1.593
1.660
N
1
A
A
C2'
C1'
DG
DG
2
2
0.078
0.010
1.519
1.597
N
1
A
A
O3'
C3'
DG
DG
2
2
-0.045
0.006
1.419
1.374
N
1
A
A
C6
N1
DG
DG
2
2
-0.048
0.007
1.391
1.343
N
1
A
A
N7
C8
DG
DG
2
2
0.046
0.006
1.305
1.351
N
1
A
A
C2
N2
DG
DG
2
2
-0.095
0.010
1.341
1.246
N
1
A
A
P
O5'
DA
DA
3
3
0.060
0.010
1.593
1.653
N
1
A
A
O4'
C1'
DA
DA
3
3
0.077
0.011
1.420
1.497
N
1
A
A
C8
N9
DA
DA
3
3
-0.061
0.008
1.373
1.312
N
1
A
A
N9
C4
DA
DA
3
3
0.036
0.006
1.374
1.410
N
1
A
A
C6
N6
DA
DA
3
3
0.048
0.008
1.335
1.383
N
1
A
A
P
O5'
DT
DT
4
4
0.065
0.010
1.593
1.658
N
1
A
A
P
O5'
DC
DC
5
5
0.100
0.010
1.593
1.693
N
1
A
A
C2'
C1'
DC
DC
5
5
0.062
0.010
1.519
1.581
N
1
A
A
N3
C4
DC
DC
5
5
0.054
0.007
1.335
1.389
N
1
A
A
C2'
C1'
DG
DG
6
6
0.073
0.010
1.519
1.592
N
1
A
A
C2
N2
DG
DG
6
6
-0.089
0.010
1.341
1.252
N
1
B
B
C4'
C3'
DG
DG
8
8
0.065
0.010
1.529
1.594
N
1
B
B
C6
N1
DG
DG
8
8
-0.069
0.007
1.391
1.322
N
1
B
B
C5
N7
DG
DG
8
8
-0.062
0.006
1.388
1.326
N
1
B
B
N7
C8
DG
DG
8
8
0.041
0.006
1.305
1.346
N
1
B
B
C2
N2
DG
DG
8
8
-0.083
0.010
1.341
1.258
N
1
B
B
C5'
C4'
DA
DA
9
9
-0.080
0.011
1.509
1.429
N
1
B
B
C4'
C3'
DA
DA
9
9
0.073
0.010
1.529
1.602
N
1
B
B
C2'
C1'
DA
DA
9
9
0.073
0.010
1.519
1.592
N
1
B
B
C8
N9
DA
DA
9
9
-0.053
0.008
1.373
1.320
N
1
B
B
N9
C4
DA
DA
9
9
0.070
0.006
1.374
1.444
N
1
B
B
C4'
C3'
DT
DT
10
10
0.084
0.010
1.529
1.613
N
1
B
B
C2'
C1'
DC
DC
11
11
0.065
0.010
1.519
1.584
N
1
B
B
O4'
C1'
DC
DC
11
11
-0.077
0.012
1.418
1.341
N
1
B
B
C4
N4
DC
DC
11
11
0.070
0.009
1.335
1.405
N
1
B
B
N1
C6
DC
DC
11
11
0.045
0.006
1.367
1.412
N
1
B
B
N3
C4
DC
DC
11
11
0.102
0.007
1.335
1.437
N
1
B
B
O3'
C3'
DG
DG
12
12
-0.053
0.006
1.419
1.366
N
1
B
B
C6
N1
DG
DG
12
12
-0.056
0.007
1.391
1.335
N
1
B
B
C2
N2
DG
DG
12
12
-0.102
0.010
1.341
1.239
N
0.233
0.224
0.266
0.226
2.15
8.0
216
2621
2321
69.7
random
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
Hendrickson, W.A.
2.15
8.0
35
367
92
240
0
0.013
1.13
0.455
2.20
3.7
41.56
2.15
18.90
1NAB
28812
28737
1.0
0.118
1
5.4
10.9
95.4
0.0874
2.10
2.17
1
75.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
NUCLSQ
The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
10
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
10
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
9
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
9
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
right handed dna, double helix, complexed with drug, DNA
1NAB
PDB
1
1NAB
1
6
1NAB
1
6
1NAB
A
1
1
6
7
12
1NAB
7
12
1NAB
B
1
1
6
BINDING SITE FOR RESIDUE 44D B 40
B
44D
40
Software
13
BINDING SITE FOR RESIDUE 44D A 41
A
44D
41
Software
7
A
DC
5
A
DC
5
13
1_555
A
DG
6
A
DG
6
13
4_455
A
DG
6
A
DG
6
13
1_555
A
HOH
43
E
HOH
13
1_555
B
DC
7
B
DC
1
13
3_554
B
DC
7
B
DC
1
13
1_555
B
DG
8
B
DG
2
13
1_555
B
DG
8
B
DG
2
13
3_554
B
DA
9
B
DA
3
13
1_555
B
DG
12
B
DG
6
13
6_455
B
HOH
46
F
HOH
13
3_554
B
HOH
57
F
HOH
13
1_555
B
HOH
63
F
HOH
13
6_455
A
DC
1
A
DC
1
7
1_555
A
DG
2
A
DG
2
7
1_555
A
DA
3
A
DA
3
7
1_555
A
DT
4
A
DT
4
7
1_555
A
HOH
50
E
HOH
7
1_555
B
DC
11
B
DC
5
7
1_555
B
DG
12
B
DG
6
7
1_555
96
P 43 21 2