0.012092
0.006981
0.000000
0.000000
0.013963
0.000000
0.000000
0.000000
0.014306
0.00000
0.00000
0.00000
Collins, B.M.
Watson, P.J.
Owen, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
82.700
82.700
69.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Dev.Cell
1534-5807
4
321
332
10.1016/S1534-5807(03)00037-6
12636914
The Structure of the GGA1-GAT Domain Reveals the Molecular Basis for ARF Binding and Membrane Association of GGAs
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-06-15
MAD
M
x-ray
1
0.9796
1.0
0.9798
1.0
0.9393
1.0
ID14-4
ESRF
0.9796, 0.9798, 0.9393
SYNCHROTRON
ESRF BEAMLINE ID14-4
18412.449
ADP-ribosylation factor binding protein GGA1
GAT domain, Residues 165-314 of SWS Q9UJY5
1
man
polymer
GGA1 appendage domain; Golgi-localized, gamma ear-containing,
ARF-binding protein 1; Gamma-adaptin related protein 1
no
yes
(MSE)HHHHHH(MSE)KNVIFEDEEKSK(MSE)LARLLKSSHPEDLRAANKLIKE(MSE)VQEDQKR(MSE)EKISKRVN
AIEEVNNNVKLLTE(MSE)V(MSE)SHSQGGAAAGSSEDL(MSE)KELYQRCER(MSE)RPTLFRLASDTEDNDEALAEI
LQANDNLTQVINLYKQLVRGEEVNGDATAGSIPG
MHHHHHHMKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHS
QGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)/pLysS
plasmid
pET
2
4.90
74.7
VAPOR DIFFUSION, HANGING DROP
4.5
sodium acetate, lithium sulphate, NaH2PO4/K2HPO4, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
exptl_crystal_grow
struct
repository
Initial release
Version format compliance
Version format compliance
Experimental preparation
Structure summary
1
0
2003-03-25
1
1
2008-04-28
1
2
2011-07-13
1
3
2018-02-14
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
_struct.title
Structure of the appendage domain of gamma-adaptin
RCSB
Y
RCSB
2002-11-27
REL
REL
n
1
157
A
n
2
158
A
n
3
159
A
n
4
160
A
n
5
161
A
n
6
162
A
n
7
163
A
n
8
164
A
n
9
165
A
n
10
166
A
n
11
167
A
n
12
168
A
n
13
169
A
n
14
170
A
ASP
171
n
15
ASP
171
A
GLU
172
n
16
GLU
172
A
GLU
173
n
17
GLU
173
A
LYS
174
n
18
LYS
174
A
SER
175
n
19
SER
175
A
LYS
176
n
20
LYS
176
A
MSE
177
n
21
MSE
177
A
LEU
178
n
22
LEU
178
A
ALA
179
n
23
ALA
179
A
ARG
180
n
24
ARG
180
A
LEU
181
n
25
LEU
181
A
LEU
182
n
26
LEU
182
A
LYS
183
n
27
LYS
183
A
SER
184
n
28
SER
184
A
SER
185
n
29
SER
185
A
HIS
186
n
30
HIS
186
A
PRO
187
n
31
PRO
187
A
GLU
188
n
32
GLU
188
A
ASP
189
n
33
ASP
189
A
LEU
190
n
34
LEU
190
A
ARG
191
n
35
ARG
191
A
ALA
192
n
36
ALA
192
A
ALA
193
n
37
ALA
193
A
ASN
194
n
38
ASN
194
A
LYS
195
n
39
LYS
195
A
LEU
196
n
40
LEU
196
A
ILE
197
n
41
ILE
197
A
LYS
198
n
42
LYS
198
A
GLU
199
n
43
GLU
199
A
MSE
200
n
44
MSE
200
A
VAL
201
n
45
VAL
201
A
GLN
202
n
46
GLN
202
A
GLU
203
n
47
GLU
203
A
ASP
204
n
48
ASP
204
A
GLN
205
n
49
GLN
205
A
LYS
206
n
50
LYS
206
A
ARG
207
n
51
ARG
207
A
MSE
208
n
52
MSE
208
A
GLU
209
n
53
GLU
209
A
LYS
210
n
54
LYS
210
A
ILE
211
n
55
ILE
211
A
SER
212
n
56
SER
212
A
LYS
213
n
57
LYS
213
A
ARG
214
n
58
ARG
214
A
VAL
215
n
59
VAL
215
A
ASN
216
n
60
ASN
216
A
ALA
217
n
61
ALA
217
A
ILE
218
n
62
ILE
218
A
GLU
219
n
63
GLU
219
A
GLU
220
n
64
GLU
220
A
VAL
221
n
65
VAL
221
A
ASN
222
n
66
ASN
222
A
ASN
223
n
67
ASN
223
A
ASN
224
n
68
ASN
224
A
VAL
225
n
69
VAL
225
A
LYS
226
n
70
LYS
226
A
LEU
227
n
71
LEU
227
A
LEU
228
n
72
LEU
228
A
THR
229
n
73
THR
229
A
GLU
230
n
74
GLU
230
A
MSE
231
n
75
MSE
231
A
VAL
232
n
76
VAL
232
A
MSE
233
n
77
MSE
233
A
SER
234
n
78
SER
234
A
HIS
235
n
79
HIS
235
A
SER
236
n
80
SER
236
A
GLN
237
n
81
GLN
237
A
GLY
238
n
82
GLY
238
A
n
83
239
A
n
84
240
A
n
85
241
A
n
86
242
A
n
87
243
A
SER
244
n
88
SER
244
A
SER
245
n
89
SER
245
A
GLU
246
n
90
GLU
246
A
ASP
247
n
91
ASP
247
A
LEU
248
n
92
LEU
248
A
MSE
249
n
93
MSE
249
A
LYS
250
n
94
LYS
250
A
GLU
251
n
95
GLU
251
A
LEU
252
n
96
LEU
252
A
TYR
253
n
97
TYR
253
A
GLN
254
n
98
GLN
254
A
ARG
255
n
99
ARG
255
A
CYS
256
n
100
CYS
256
A
GLU
257
n
101
GLU
257
A
ARG
258
n
102
ARG
258
A
MSE
259
n
103
MSE
259
A
ARG
260
n
104
ARG
260
A
PRO
261
n
105
PRO
261
A
THR
262
n
106
THR
262
A
LEU
263
n
107
LEU
263
A
PHE
264
n
108
PHE
264
A
ARG
265
n
109
ARG
265
A
LEU
266
n
110
LEU
266
A
ALA
267
n
111
ALA
267
A
SER
268
n
112
SER
268
A
ASP
269
n
113
ASP
269
A
THR
270
n
114
THR
270
A
GLU
271
n
115
GLU
271
A
ASP
272
n
116
ASP
272
A
ASN
273
n
117
ASN
273
A
ASP
274
n
118
ASP
274
A
GLU
275
n
119
GLU
275
A
ALA
276
n
120
ALA
276
A
LEU
277
n
121
LEU
277
A
ALA
278
n
122
ALA
278
A
GLU
279
n
123
GLU
279
A
ILE
280
n
124
ILE
280
A
LEU
281
n
125
LEU
281
A
GLN
282
n
126
GLN
282
A
ALA
283
n
127
ALA
283
A
ASN
284
n
128
ASN
284
A
ASP
285
n
129
ASP
285
A
ASN
286
n
130
ASN
286
A
LEU
287
n
131
LEU
287
A
THR
288
n
132
THR
288
A
GLN
289
n
133
GLN
289
A
VAL
290
n
134
VAL
290
A
ILE
291
n
135
ILE
291
A
ASN
292
n
136
ASN
292
A
LEU
293
n
137
LEU
293
A
TYR
294
n
138
TYR
294
A
LYS
295
n
139
LYS
295
A
GLN
296
n
140
GLN
296
A
LEU
297
n
141
LEU
297
A
VAL
298
n
142
VAL
298
A
ARG
299
n
143
ARG
299
A
n
144
300
A
n
145
301
A
n
146
302
A
n
147
303
A
n
148
304
A
n
149
305
A
n
150
306
A
n
151
307
A
n
152
308
A
n
153
309
A
n
154
310
A
n
155
311
A
n
156
312
A
n
157
313
A
n
158
314
A
author_defined_assembly
1
monomeric
A
MSE
177
SELENOMETHIONINE
A
MSE
21
MET
A
MSE
200
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
208
SELENOMETHIONINE
A
MSE
52
MET
A
MSE
231
SELENOMETHIONINE
A
MSE
75
MET
A
MSE
233
SELENOMETHIONINE
A
MSE
77
MET
A
MSE
249
SELENOMETHIONINE
A
MSE
93
MET
A
MSE
259
SELENOMETHIONINE
A
MSE
103
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MSE
157
A
MSE
1
1
Y
1
A
HIS
158
A
HIS
2
1
Y
1
A
HIS
159
A
HIS
3
1
Y
1
A
HIS
160
A
HIS
4
1
Y
1
A
HIS
161
A
HIS
5
1
Y
1
A
HIS
162
A
HIS
6
1
Y
1
A
HIS
163
A
HIS
7
1
Y
1
A
MSE
164
A
MSE
8
1
Y
1
A
LYS
165
A
LYS
9
1
Y
1
A
ASN
166
A
ASN
10
1
Y
1
A
VAL
167
A
VAL
11
1
Y
1
A
ILE
168
A
ILE
12
1
Y
1
A
PHE
169
A
PHE
13
1
Y
1
A
GLU
170
A
GLU
14
1
Y
1
A
GLY
239
A
GLY
83
1
Y
1
A
ALA
240
A
ALA
84
1
Y
1
A
ALA
241
A
ALA
85
1
Y
1
A
ALA
242
A
ALA
86
1
Y
1
A
GLY
243
A
GLY
87
1
Y
1
A
GLY
300
A
GLY
144
1
Y
1
A
GLU
301
A
GLU
145
1
Y
1
A
GLU
302
A
GLU
146
1
Y
1
A
VAL
303
A
VAL
147
1
Y
1
A
ASN
304
A
ASN
148
1
Y
1
A
GLY
305
A
GLY
149
1
Y
1
A
ASP
306
A
ASP
150
1
Y
1
A
ALA
307
A
ALA
151
1
Y
1
A
THR
308
A
THR
152
1
Y
1
A
ALA
309
A
ALA
153
1
Y
1
A
GLY
310
A
GLY
154
1
Y
1
A
SER
311
A
SER
155
1
Y
1
A
ILE
312
A
ILE
156
1
Y
1
A
PRO
313
A
PRO
157
1
Y
1
A
GLY
314
A
GLY
158
1
Y
1
A
SER
184
178.17
177.50
1
A
SER
185
-52.93
-166.57
1
A
PRO
187
-16.37
-83.47
1
A
GLU
188
-93.54
-62.03
1
A
ASP
189
-13.00
-71.42
1
A
GLN
237
-151.76
-33.27
1
A
GLU
246
-59.59
0.08
1
A
PRO
261
-47.89
-72.10
1
A
THR
270
-92.82
56.05
1
A
ASN
273
175.13
89.77
-11.609
-29.295
0.000
-11.609
0.000
23.219
0.2833
0.2483
0.2485
0.2484
2.80
20.
294
6768
5495
random
1
THROUGHOUT
2.6
MAD
Engh & Huber
2.80
20.
0
1006
0
0
1006
105
2.80
70.
1NAF
6684
2.6
0.066
1
14.2
3.7
99.7
0.399
2.80
2.95
2.6
3.6
99.7
data reduction
MOSFLM
data scaling
SCALA
phasing
SHARP
refinement
CNS
data scaling
CCP4
(SCALA)
ADP-ribosylation factor binding protein GGA1, GAT domain
Crystal structure of the human GGA1 GAT domain
1
N
N
A
GLU
172
A
GLU
16
HELX_P
A
LYS
183
A
LYS
27
1
1
12
A
GLU
188
A
GLU
32
HELX_P
A
HIS
235
A
HIS
79
1
2
48
A
ASP
247
A
ASP
91
HELX_P
A
ARG
258
A
ARG
102
1
3
12
A
ARG
258
A
ARG
102
HELX_P
A
THR
270
A
THR
114
1
4
13
A
ASN
273
A
ASN
117
HELX_P
A
ARG
299
A
ARG
143
1
5
27
covale
1.329
A
LYS
176
A
C
LYS
20
1_555
A
MSE
177
A
N
MSE
21
1_555
covale
1.327
A
MSE
177
A
C
MSE
21
1_555
A
LEU
178
A
N
LEU
22
1_555
covale
1.326
A
GLU
199
A
C
GLU
43
1_555
A
MSE
200
A
N
MSE
44
1_555
covale
1.329
A
MSE
200
A
C
MSE
44
1_555
A
VAL
201
A
N
VAL
45
1_555
covale
1.331
A
ARG
207
A
C
ARG
51
1_555
A
MSE
208
A
N
MSE
52
1_555
covale
1.329
A
MSE
208
A
C
MSE
52
1_555
A
GLU
209
A
N
GLU
53
1_555
covale
1.323
A
GLU
230
A
C
GLU
74
1_555
A
MSE
231
A
N
MSE
75
1_555
covale
1.324
A
MSE
231
A
C
MSE
75
1_555
A
VAL
232
A
N
VAL
76
1_555
covale
1.327
A
VAL
232
A
C
VAL
76
1_555
A
MSE
233
A
N
MSE
77
1_555
covale
1.328
A
MSE
233
A
C
MSE
77
1_555
A
SER
234
A
N
SER
78
1_555
covale
1.327
A
LEU
248
A
C
LEU
92
1_555
A
MSE
249
A
N
MSE
93
1_555
covale
1.329
A
MSE
249
A
C
MSE
93
1_555
A
LYS
250
A
N
LYS
94
1_555
covale
1.332
A
ARG
258
A
C
ARG
102
1_555
A
MSE
259
A
N
MSE
103
1_555
covale
1.336
A
MSE
259
A
C
MSE
103
1_555
A
ARG
260
A
N
ARG
104
1_555
SIGNALING PROTEIN, MEMBRANE PROTEIN
clathrin-adaptor, GGA, GAT domain, helical paper-clip, three-helix bundle, SIGNALING PROTEIN, MEMBRANE PROTEIN
GGA1_HUMAN
UNP
1
165
Q9UJY5
KNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGS
SEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPG
165
314
1NAF
165
314
Q9UJY5
A
1
9
158
1
EXPRESSION TAG
MSE
157
1NAF
A
Q9UJY5
UNP
1
1
EXPRESSION TAG
HIS
158
1NAF
A
Q9UJY5
UNP
2
1
EXPRESSION TAG
HIS
159
1NAF
A
Q9UJY5
UNP
3
1
EXPRESSION TAG
HIS
160
1NAF
A
Q9UJY5
UNP
4
1
EXPRESSION TAG
HIS
161
1NAF
A
Q9UJY5
UNP
5
1
EXPRESSION TAG
HIS
162
1NAF
A
Q9UJY5
UNP
6
1
EXPRESSION TAG
HIS
163
1NAF
A
Q9UJY5
UNP
7
1
EXPRESSION TAG
MSE
164
1NAF
A
Q9UJY5
UNP
8
1
MET
CLONING ARTIFACT
MSE
177
1NAF
A
Q9UJY5
UNP
177
21
1
MET
CLONING ARTIFACT
MSE
200
1NAF
A
Q9UJY5
UNP
200
44
1
MET
CLONING ARTIFACT
MSE
208
1NAF
A
Q9UJY5
UNP
208
52
1
MET
CLONING ARTIFACT
MSE
231
1NAF
A
Q9UJY5
UNP
231
75
1
MET
CLONING ARTIFACT
MSE
233
1NAF
A
Q9UJY5
UNP
233
77
1
MET
CLONING ARTIFACT
MSE
249
1NAF
A
Q9UJY5
UNP
249
93
1
MET
CLONING ARTIFACT
MSE
259
1NAF
A
Q9UJY5
UNP
259
103
173
hexagonal
P 63