0.008562
0.000000
0.004945
0.000000
0.016181
0.000000
0.000000
0.000000
0.013930
0.00000
0.00000
0.00000
Prota, A.E.
Campbell, J.A.
Schelling, P.
Forrest, J.C.
Watson, M.J.
Peters, T.R.
Aurrand-Lions, M.
Imhof, B.A.
Dermody, T.S.
Stehle, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
120.01
90.0
116.8
61.8
82.9
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
5366
5371
10.1073/pnas.0937718100
12697893
Crystal structure of human junctional adhesion molecule 1: Implications for reovirus binding
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
CCD
2001-10-02
CUSTOM-MADE
monochromator at X25
SINGLE WAVELENGTH
M
x-ray
1
monochromator at X25
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
22703.221
Junctional adhesion molecule 1
2
man
polymer
18.015
water
124
nat
water
JAM; Platelet adhesion molecule 1; PAM-1; Platelet F11 receptor
no
no
AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT
GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS
NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT
GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS
NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
JAM1
9606
Homo sapiens
562
Escherichia coli
plasmid
2
2.85
56.86
VAPOR DIFFUSION, HANGING DROP
6.0
PEG 6000, isopropanol, sodium citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-04-01
1
1
2008-04-28
1
2
2011-07-13
RCSB
Y
RCSB
2002-12-03
REL
HOH
water
HOH
1
2
HOH
HOH
234
A
HOH
3
2
HOH
HOH
235
A
HOH
5
2
HOH
HOH
236
A
HOH
6
2
HOH
HOH
237
A
HOH
8
2
HOH
HOH
238
A
HOH
9
2
HOH
HOH
239
A
HOH
10
2
HOH
HOH
240
A
HOH
12
2
HOH
HOH
241
A
HOH
15
2
HOH
HOH
242
A
HOH
17
2
HOH
HOH
243
A
HOH
19
2
HOH
HOH
244
A
HOH
20
2
HOH
HOH
245
A
HOH
22
2
HOH
HOH
246
A
HOH
23
2
HOH
HOH
247
A
HOH
25
2
HOH
HOH
248
A
HOH
27
2
HOH
HOH
249
A
HOH
28
2
HOH
HOH
250
A
HOH
30
2
HOH
HOH
251
A
HOH
31
2
HOH
HOH
252
A
HOH
32
2
HOH
HOH
253
A
HOH
34
2
HOH
HOH
254
A
HOH
35
2
HOH
HOH
255
A
HOH
39
2
HOH
HOH
256
A
HOH
40
2
HOH
HOH
257
A
HOH
41
2
HOH
HOH
258
A
HOH
42
2
HOH
HOH
259
A
HOH
43
2
HOH
HOH
260
A
HOH
44
2
HOH
HOH
261
A
HOH
45
2
HOH
HOH
262
A
HOH
46
2
HOH
HOH
263
A
HOH
47
2
HOH
HOH
264
A
HOH
48
2
HOH
HOH
265
A
HOH
49
2
HOH
HOH
266
A
HOH
52
2
HOH
HOH
267
A
HOH
60
2
HOH
HOH
268
A
HOH
68
2
HOH
HOH
269
A
HOH
72
2
HOH
HOH
270
A
HOH
73
2
HOH
HOH
271
A
HOH
74
2
HOH
HOH
272
A
HOH
75
2
HOH
HOH
273
A
HOH
76
2
HOH
HOH
274
A
HOH
77
2
HOH
HOH
275
A
HOH
78
2
HOH
HOH
276
A
HOH
81
2
HOH
HOH
277
A
HOH
88
2
HOH
HOH
278
A
HOH
94
2
HOH
HOH
279
A
HOH
104
2
HOH
HOH
280
A
HOH
105
2
HOH
HOH
281
A
HOH
106
2
HOH
HOH
282
A
HOH
107
2
HOH
HOH
283
A
HOH
108
2
HOH
HOH
284
A
HOH
109
2
HOH
HOH
285
A
HOH
110
2
HOH
HOH
286
A
HOH
111
2
HOH
HOH
287
A
HOH
112
2
HOH
HOH
288
A
HOH
113
2
HOH
HOH
289
A
HOH
114
2
HOH
HOH
290
A
HOH
115
2
HOH
HOH
291
A
HOH
116
2
HOH
HOH
292
A
HOH
117
2
HOH
HOH
293
A
HOH
123
2
HOH
HOH
294
A
HOH
2
2
HOH
HOH
234
B
HOH
4
2
HOH
HOH
235
B
HOH
7
2
HOH
HOH
236
B
HOH
11
2
HOH
HOH
237
B
HOH
13
2
HOH
HOH
238
B
HOH
14
2
HOH
HOH
239
B
HOH
16
2
HOH
HOH
240
B
HOH
18
2
HOH
HOH
241
B
HOH
21
2
HOH
HOH
242
B
HOH
24
2
HOH
HOH
243
B
HOH
26
2
HOH
HOH
244
B
HOH
29
2
HOH
HOH
245
B
HOH
33
2
HOH
HOH
246
B
HOH
36
2
HOH
HOH
247
B
HOH
37
2
HOH
HOH
248
B
HOH
38
2
HOH
HOH
249
B
HOH
50
2
HOH
HOH
250
B
HOH
51
2
HOH
HOH
251
B
HOH
53
2
HOH
HOH
252
B
HOH
54
2
HOH
HOH
253
B
HOH
55
2
HOH
HOH
254
B
HOH
56
2
HOH
HOH
255
B
HOH
57
2
HOH
HOH
256
B
HOH
58
2
HOH
HOH
257
B
HOH
59
2
HOH
HOH
258
B
HOH
61
2
HOH
HOH
259
B
HOH
62
2
HOH
HOH
260
B
HOH
63
2
HOH
HOH
261
B
HOH
64
2
HOH
HOH
262
B
HOH
65
2
HOH
HOH
263
B
HOH
66
2
HOH
HOH
264
B
HOH
67
2
HOH
HOH
265
B
HOH
69
2
HOH
HOH
266
B
HOH
70
2
HOH
HOH
267
B
HOH
71
2
HOH
HOH
268
B
HOH
79
2
HOH
HOH
269
B
HOH
80
2
HOH
HOH
270
B
HOH
82
2
HOH
HOH
271
B
HOH
83
2
HOH
HOH
272
B
HOH
84
2
HOH
HOH
273
B
HOH
85
2
HOH
HOH
274
B
HOH
86
2
HOH
HOH
275
B
HOH
87
2
HOH
HOH
276
B
HOH
89
2
HOH
HOH
277
B
HOH
90
2
HOH
HOH
278
B
HOH
91
2
HOH
HOH
279
B
HOH
92
2
HOH
HOH
280
B
HOH
93
2
HOH
HOH
281
B
HOH
95
2
HOH
HOH
282
B
HOH
96
2
HOH
HOH
283
B
HOH
97
2
HOH
HOH
284
B
HOH
98
2
HOH
HOH
285
B
HOH
99
2
HOH
HOH
286
B
HOH
100
2
HOH
HOH
287
B
HOH
101
2
HOH
HOH
288
B
HOH
102
2
HOH
HOH
289
B
HOH
103
2
HOH
HOH
290
B
HOH
118
2
HOH
HOH
291
B
HOH
119
2
HOH
HOH
292
B
HOH
120
2
HOH
HOH
293
B
HOH
121
2
HOH
HOH
294
B
HOH
122
2
HOH
HOH
295
B
HOH
124
2
HOH
HOH
296
B
ALA
25
n
1
ALA
25
A
MET
26
n
2
MET
26
A
GLY
27
n
3
GLY
27
A
SER
28
n
4
SER
28
A
VAL
29
n
5
VAL
29
A
THR
30
n
6
THR
30
A
VAL
31
n
7
VAL
31
A
HIS
32
n
8
HIS
32
A
SER
33
n
9
SER
33
A
SER
34
n
10
SER
34
A
GLU
35
n
11
GLU
35
A
PRO
36
n
12
PRO
36
A
GLU
37
n
13
GLU
37
A
VAL
38
n
14
VAL
38
A
ARG
39
n
15
ARG
39
A
ILE
40
n
16
ILE
40
A
PRO
41
n
17
PRO
41
A
GLU
42
n
18
GLU
42
A
ASN
43
n
19
ASN
43
A
ASN
44
n
20
ASN
44
A
PRO
45
n
21
PRO
45
A
VAL
46
n
22
VAL
46
A
LYS
47
n
23
LYS
47
A
LEU
48
n
24
LEU
48
A
SER
49
n
25
SER
49
A
CYS
50
n
26
CYS
50
A
ALA
51
n
27
ALA
51
A
TYR
52
n
28
TYR
52
A
SER
53
n
29
SER
53
A
GLY
54
n
30
GLY
54
A
PHE
55
n
31
PHE
55
A
SER
56
n
32
SER
56
A
SER
57
n
33
SER
57
A
PRO
58
n
34
PRO
58
A
ARG
59
n
35
ARG
59
A
VAL
60
n
36
VAL
60
A
GLU
61
n
37
GLU
61
A
TRP
62
n
38
TRP
62
A
LYS
63
n
39
LYS
63
A
PHE
64
n
40
PHE
64
A
ASP
65
n
41
ASP
65
A
GLN
66
n
42
GLN
66
A
GLY
67
n
43
GLY
67
A
ASP
68
n
44
ASP
68
A
THR
69
n
45
THR
69
A
THR
70
n
46
THR
70
A
ARG
71
n
47
ARG
71
A
LEU
72
n
48
LEU
72
A
VAL
73
n
49
VAL
73
A
CYS
74
n
50
CYS
74
A
TYR
75
n
51
TYR
75
A
ASN
76
n
52
ASN
76
A
ASN
77
n
53
ASN
77
A
LYS
78
n
54
LYS
78
A
ILE
79
n
55
ILE
79
A
THR
80
n
56
THR
80
A
ALA
81
n
57
ALA
81
A
SER
82
n
58
SER
82
A
TYR
83
n
59
TYR
83
A
GLU
84
n
60
GLU
84
A
ASP
85
n
61
ASP
85
A
ARG
86
n
62
ARG
86
A
VAL
87
n
63
VAL
87
A
THR
88
n
64
THR
88
A
PHE
89
n
65
PHE
89
A
LEU
90
n
66
LEU
90
A
PRO
91
n
67
PRO
91
A
THR
92
n
68
THR
92
A
GLY
93
n
69
GLY
93
A
ILE
94
n
70
ILE
94
A
THR
95
n
71
THR
95
A
PHE
96
n
72
PHE
96
A
LYS
97
n
73
LYS
97
A
SER
98
n
74
SER
98
A
VAL
99
n
75
VAL
99
A
THR
100
n
76
THR
100
A
ARG
101
n
77
ARG
101
A
GLU
102
n
78
GLU
102
A
ASP
103
n
79
ASP
103
A
THR
104
n
80
THR
104
A
GLY
105
n
81
GLY
105
A
THR
106
n
82
THR
106
A
TYR
107
n
83
TYR
107
A
THR
108
n
84
THR
108
A
CYS
109
n
85
CYS
109
A
MET
110
n
86
MET
110
A
VAL
111
n
87
VAL
111
A
SER
112
n
88
SER
112
A
GLU
113
n
89
GLU
113
A
GLU
114
n
90
GLU
114
A
GLY
115
n
91
GLY
115
A
GLY
116
n
92
GLY
116
A
ASN
117
n
93
ASN
117
A
SER
118
n
94
SER
118
A
TYR
119
n
95
TYR
119
A
GLY
120
n
96
GLY
120
A
GLU
121
n
97
GLU
121
A
VAL
122
n
98
VAL
122
A
LYS
123
n
99
LYS
123
A
VAL
124
n
100
VAL
124
A
LYS
125
n
101
LYS
125
A
LEU
126
n
102
LEU
126
A
ILE
127
n
103
ILE
127
A
VAL
128
n
104
VAL
128
A
LEU
129
n
105
LEU
129
A
VAL
130
n
106
VAL
130
A
PRO
131
n
107
PRO
131
A
PRO
132
n
108
PRO
132
A
SER
133
n
109
SER
133
A
LYS
134
n
110
LYS
134
A
PRO
135
n
111
PRO
135
A
THR
136
n
112
THR
136
A
VAL
137
n
113
VAL
137
A
ASN
138
n
114
ASN
138
A
ILE
139
n
115
ILE
139
A
PRO
140
n
116
PRO
140
A
SER
141
n
117
SER
141
A
SER
142
n
118
SER
142
A
ALA
143
n
119
ALA
143
A
THR
144
n
120
THR
144
A
ILE
145
n
121
ILE
145
A
GLY
146
n
122
GLY
146
A
ASN
147
n
123
ASN
147
A
ARG
148
n
124
ARG
148
A
ALA
149
n
125
ALA
149
A
VAL
150
n
126
VAL
150
A
LEU
151
n
127
LEU
151
A
THR
152
n
128
THR
152
A
CYS
153
n
129
CYS
153
A
SER
154
n
130
SER
154
A
GLU
155
n
131
GLU
155
A
GLN
156
n
132
GLN
156
A
ASP
157
n
133
ASP
157
A
GLY
158
n
134
GLY
158
A
SER
159
n
135
SER
159
A
PRO
160
n
136
PRO
160
A
PRO
161
n
137
PRO
161
A
SER
162
n
138
SER
162
A
GLU
163
n
139
GLU
163
A
TYR
164
n
140
TYR
164
A
THR
165
n
141
THR
165
A
TRP
166
n
142
TRP
166
A
PHE
167
n
143
PHE
167
A
LYS
168
n
144
LYS
168
A
ASP
169
n
145
ASP
169
A
GLY
170
n
146
GLY
170
A
ILE
171
n
147
ILE
171
A
VAL
172
n
148
VAL
172
A
MET
173
n
149
MET
173
A
PRO
174
n
150
PRO
174
A
THR
175
n
151
THR
175
A
ASN
176
n
152
ASN
176
A
PRO
177
n
153
PRO
177
A
LYS
178
n
154
LYS
178
A
SER
179
n
155
SER
179
A
THR
180
n
156
THR
180
A
ARG
181
n
157
ARG
181
A
ALA
182
n
158
ALA
182
A
PHE
183
n
159
PHE
183
A
SER
184
n
160
SER
184
A
ASN
185
n
161
ASN
185
A
SER
186
n
162
SER
186
A
SER
187
n
163
SER
187
A
TYR
188
n
164
TYR
188
A
VAL
189
n
165
VAL
189
A
LEU
190
n
166
LEU
190
A
ASN
191
n
167
ASN
191
A
PRO
192
n
168
PRO
192
A
THR
193
n
169
THR
193
A
THR
194
n
170
THR
194
A
GLY
195
n
171
GLY
195
A
GLU
196
n
172
GLU
196
A
LEU
197
n
173
LEU
197
A
VAL
198
n
174
VAL
198
A
PHE
199
n
175
PHE
199
A
ASP
200
n
176
ASP
200
A
PRO
201
n
177
PRO
201
A
LEU
202
n
178
LEU
202
A
SER
203
n
179
SER
203
A
ALA
204
n
180
ALA
204
A
SER
205
n
181
SER
205
A
ASP
206
n
182
ASP
206
A
THR
207
n
183
THR
207
A
GLY
208
n
184
GLY
208
A
GLU
209
n
185
GLU
209
A
TYR
210
n
186
TYR
210
A
SER
211
n
187
SER
211
A
CYS
212
n
188
CYS
212
A
GLU
213
n
189
GLU
213
A
ALA
214
n
190
ALA
214
A
ARG
215
n
191
ARG
215
A
ASN
216
n
192
ASN
216
A
GLY
217
n
193
GLY
217
A
TYR
218
n
194
TYR
218
A
GLY
219
n
195
GLY
219
A
THR
220
n
196
THR
220
A
PRO
221
n
197
PRO
221
A
MET
222
n
198
MET
222
A
THR
223
n
199
THR
223
A
SER
224
n
200
SER
224
A
ASN
225
n
201
ASN
225
A
ALA
226
n
202
ALA
226
A
VAL
227
n
203
VAL
227
A
ARG
228
n
204
ARG
228
A
MET
229
n
205
MET
229
A
GLU
230
n
206
GLU
230
A
ALA
231
n
207
ALA
231
A
VAL
232
n
208
VAL
232
A
GLU
233
n
209
GLU
233
A
n
1
25
B
MET
26
n
2
MET
26
B
GLY
27
n
3
GLY
27
B
SER
28
n
4
SER
28
B
VAL
29
n
5
VAL
29
B
THR
30
n
6
THR
30
B
VAL
31
n
7
VAL
31
B
HIS
32
n
8
HIS
32
B
SER
33
n
9
SER
33
B
SER
34
n
10
SER
34
B
GLU
35
n
11
GLU
35
B
PRO
36
n
12
PRO
36
B
GLU
37
n
13
GLU
37
B
VAL
38
n
14
VAL
38
B
ARG
39
n
15
ARG
39
B
ILE
40
n
16
ILE
40
B
PRO
41
n
17
PRO
41
B
GLU
42
n
18
GLU
42
B
ASN
43
n
19
ASN
43
B
ASN
44
n
20
ASN
44
B
PRO
45
n
21
PRO
45
B
VAL
46
n
22
VAL
46
B
LYS
47
n
23
LYS
47
B
LEU
48
n
24
LEU
48
B
SER
49
n
25
SER
49
B
CYS
50
n
26
CYS
50
B
ALA
51
n
27
ALA
51
B
TYR
52
n
28
TYR
52
B
SER
53
n
29
SER
53
B
GLY
54
n
30
GLY
54
B
PHE
55
n
31
PHE
55
B
SER
56
n
32
SER
56
B
SER
57
n
33
SER
57
B
PRO
58
n
34
PRO
58
B
ARG
59
n
35
ARG
59
B
VAL
60
n
36
VAL
60
B
GLU
61
n
37
GLU
61
B
TRP
62
n
38
TRP
62
B
LYS
63
n
39
LYS
63
B
PHE
64
n
40
PHE
64
B
ASP
65
n
41
ASP
65
B
GLN
66
n
42
GLN
66
B
GLY
67
n
43
GLY
67
B
ASP
68
n
44
ASP
68
B
THR
69
n
45
THR
69
B
THR
70
n
46
THR
70
B
ARG
71
n
47
ARG
71
B
LEU
72
n
48
LEU
72
B
VAL
73
n
49
VAL
73
B
CYS
74
n
50
CYS
74
B
TYR
75
n
51
TYR
75
B
ASN
76
n
52
ASN
76
B
ASN
77
n
53
ASN
77
B
LYS
78
n
54
LYS
78
B
ILE
79
n
55
ILE
79
B
THR
80
n
56
THR
80
B
ALA
81
n
57
ALA
81
B
SER
82
n
58
SER
82
B
TYR
83
n
59
TYR
83
B
GLU
84
n
60
GLU
84
B
ASP
85
n
61
ASP
85
B
ARG
86
n
62
ARG
86
B
VAL
87
n
63
VAL
87
B
THR
88
n
64
THR
88
B
PHE
89
n
65
PHE
89
B
LEU
90
n
66
LEU
90
B
PRO
91
n
67
PRO
91
B
THR
92
n
68
THR
92
B
GLY
93
n
69
GLY
93
B
ILE
94
n
70
ILE
94
B
THR
95
n
71
THR
95
B
PHE
96
n
72
PHE
96
B
LYS
97
n
73
LYS
97
B
SER
98
n
74
SER
98
B
VAL
99
n
75
VAL
99
B
THR
100
n
76
THR
100
B
ARG
101
n
77
ARG
101
B
GLU
102
n
78
GLU
102
B
ASP
103
n
79
ASP
103
B
THR
104
n
80
THR
104
B
GLY
105
n
81
GLY
105
B
THR
106
n
82
THR
106
B
TYR
107
n
83
TYR
107
B
THR
108
n
84
THR
108
B
CYS
109
n
85
CYS
109
B
MET
110
n
86
MET
110
B
VAL
111
n
87
VAL
111
B
SER
112
n
88
SER
112
B
GLU
113
n
89
GLU
113
B
GLU
114
n
90
GLU
114
B
GLY
115
n
91
GLY
115
B
GLY
116
n
92
GLY
116
B
ASN
117
n
93
ASN
117
B
SER
118
n
94
SER
118
B
TYR
119
n
95
TYR
119
B
GLY
120
n
96
GLY
120
B
GLU
121
n
97
GLU
121
B
VAL
122
n
98
VAL
122
B
LYS
123
n
99
LYS
123
B
VAL
124
n
100
VAL
124
B
LYS
125
n
101
LYS
125
B
LEU
126
n
102
LEU
126
B
ILE
127
n
103
ILE
127
B
VAL
128
n
104
VAL
128
B
LEU
129
n
105
LEU
129
B
VAL
130
n
106
VAL
130
B
PRO
131
n
107
PRO
131
B
PRO
132
n
108
PRO
132
B
SER
133
n
109
SER
133
B
LYS
134
n
110
LYS
134
B
PRO
135
n
111
PRO
135
B
THR
136
n
112
THR
136
B
VAL
137
n
113
VAL
137
B
ASN
138
n
114
ASN
138
B
ILE
139
n
115
ILE
139
B
PRO
140
n
116
PRO
140
B
SER
141
n
117
SER
141
B
SER
142
n
118
SER
142
B
ALA
143
n
119
ALA
143
B
THR
144
n
120
THR
144
B
ILE
145
n
121
ILE
145
B
GLY
146
n
122
GLY
146
B
ASN
147
n
123
ASN
147
B
ARG
148
n
124
ARG
148
B
ALA
149
n
125
ALA
149
B
VAL
150
n
126
VAL
150
B
LEU
151
n
127
LEU
151
B
THR
152
n
128
THR
152
B
CYS
153
n
129
CYS
153
B
SER
154
n
130
SER
154
B
GLU
155
n
131
GLU
155
B
GLN
156
n
132
GLN
156
B
ASP
157
n
133
ASP
157
B
GLY
158
n
134
GLY
158
B
SER
159
n
135
SER
159
B
PRO
160
n
136
PRO
160
B
PRO
161
n
137
PRO
161
B
SER
162
n
138
SER
162
B
GLU
163
n
139
GLU
163
B
TYR
164
n
140
TYR
164
B
THR
165
n
141
THR
165
B
TRP
166
n
142
TRP
166
B
PHE
167
n
143
PHE
167
B
LYS
168
n
144
LYS
168
B
ASP
169
n
145
ASP
169
B
GLY
170
n
146
GLY
170
B
ILE
171
n
147
ILE
171
B
VAL
172
n
148
VAL
172
B
MET
173
n
149
MET
173
B
PRO
174
n
150
PRO
174
B
THR
175
n
151
THR
175
B
ASN
176
n
152
ASN
176
B
PRO
177
n
153
PRO
177
B
LYS
178
n
154
LYS
178
B
SER
179
n
155
SER
179
B
THR
180
n
156
THR
180
B
ARG
181
n
157
ARG
181
B
ALA
182
n
158
ALA
182
B
PHE
183
n
159
PHE
183
B
SER
184
n
160
SER
184
B
ASN
185
n
161
ASN
185
B
SER
186
n
162
SER
186
B
SER
187
n
163
SER
187
B
TYR
188
n
164
TYR
188
B
VAL
189
n
165
VAL
189
B
LEU
190
n
166
LEU
190
B
ASN
191
n
167
ASN
191
B
PRO
192
n
168
PRO
192
B
THR
193
n
169
THR
193
B
THR
194
n
170
THR
194
B
GLY
195
n
171
GLY
195
B
GLU
196
n
172
GLU
196
B
LEU
197
n
173
LEU
197
B
VAL
198
n
174
VAL
198
B
PHE
199
n
175
PHE
199
B
ASP
200
n
176
ASP
200
B
PRO
201
n
177
PRO
201
B
LEU
202
n
178
LEU
202
B
SER
203
n
179
SER
203
B
ALA
204
n
180
ALA
204
B
SER
205
n
181
SER
205
B
ASP
206
n
182
ASP
206
B
THR
207
n
183
THR
207
B
GLY
208
n
184
GLY
208
B
GLU
209
n
185
GLU
209
B
TYR
210
n
186
TYR
210
B
SER
211
n
187
SER
211
B
CYS
212
n
188
CYS
212
B
GLU
213
n
189
GLU
213
B
ALA
214
n
190
ALA
214
B
ARG
215
n
191
ARG
215
B
ASN
216
n
192
ASN
216
B
GLY
217
n
193
GLY
217
B
TYR
218
n
194
TYR
218
B
GLY
219
n
195
GLY
219
B
THR
220
n
196
THR
220
B
PRO
221
n
197
PRO
221
B
MET
222
n
198
MET
222
B
THR
223
n
199
THR
223
B
SER
224
n
200
SER
224
B
ASN
225
n
201
ASN
225
B
ALA
226
n
202
ALA
226
B
VAL
227
n
203
VAL
227
B
ARG
228
n
204
ARG
228
B
MET
229
n
205
MET
229
B
GLU
230
n
206
GLU
230
B
ALA
231
n
207
ALA
231
B
VAL
232
n
208
VAL
232
B
GLU
233
n
209
GLU
233
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
30
A
N
THR
6
A
O
SER
53
A
O
SER
29
A
N
ILE
40
A
N
ILE
16
A
O
LEU
129
A
O
LEU
105
A
N
LEU
48
A
N
LEU
24
A
O
ILE
94
A
O
ILE
70
A
O
THR
95
A
O
THR
71
A
N
THR
88
A
N
THR
64
A
O
THR
69
A
O
THR
45
A
N
GLN
66
A
N
GLN
42
A
N
LYS
63
A
N
LYS
39
A
O
THR
108
A
O
THR
84
A
N
VAL
111
A
N
VAL
87
A
O
GLY
120
A
O
GLY
96
A
O
THR
69
A
O
THR
45
A
N
GLN
66
A
N
GLN
42
A
N
LYS
63
A
N
LYS
39
A
O
THR
108
A
O
THR
84
A
N
TYR
107
A
N
TYR
83
A
O
VAL
124
A
O
VAL
100
A
N
TYR
75
A
N
TYR
51
A
O
LYS
78
A
O
LYS
54
A
N
ALA
143
A
N
ALA
119
A
O
VAL
232
A
O
VAL
208
A
N
LEU
151
A
N
LEU
127
A
O
LEU
197
A
O
LEU
173
A
N
GLU
163
A
N
GLU
139
A
O
ARG
215
A
O
ARG
191
A
N
ALA
214
A
N
ALA
190
A
O
MET
222
A
O
MET
198
B
N
THR
30
B
N
THR
6
B
O
SER
53
B
O
SER
29
B
N
ILE
40
B
N
ILE
16
B
O
LEU
129
B
O
LEU
105
B
N
LEU
48
B
N
LEU
24
B
O
ILE
94
B
O
ILE
70
B
O
THR
95
B
O
THR
71
B
N
THR
88
B
N
THR
64
B
O
THR
69
B
O
THR
45
B
N
GLN
66
B
N
GLN
42
B
N
LYS
63
B
N
LYS
39
B
O
THR
108
B
O
THR
84
B
N
VAL
111
B
N
VAL
87
B
O
GLY
120
B
O
GLY
96
B
O
THR
69
B
O
THR
45
B
N
GLN
66
B
N
GLN
42
B
N
LYS
63
B
N
LYS
39
B
O
THR
108
B
O
THR
84
B
N
TYR
107
B
N
TYR
83
B
O
VAL
124
B
O
VAL
100
B
N
TYR
75
B
N
TYR
51
B
O
LYS
78
B
O
LYS
54
B
N
ALA
143
B
N
ALA
119
B
O
VAL
232
B
O
VAL
208
B
N
LEU
151
B
N
LEU
127
B
O
LEU
197
B
O
LEU
173
B
N
GLU
163
B
N
GLU
139
B
O
ARG
215
B
O
ARG
191
B
N
ALA
214
B
N
ALA
190
B
O
MET
222
B
O
MET
198
1
B
ALA
25
B
ALA
1
1
Y
1
B
VAL
232
-11.07
1
A
TYR
52
0.074
SIDE CHAIN
1
A
TYR
164
0.069
SIDE CHAIN
1
B
TYR
52
0.074
SIDE CHAIN
1
10.57
1.50
119.30
129.87
A
A
A
C
N
CA
ILE
PRO
PRO
40
41
41
Y
1
7.89
1.10
114.20
122.09
A
A
A
CA
CB
SG
CYS
CYS
CYS
153
153
153
N
1
-16.57
2.70
111.00
94.43
A
A
A
N
CA
C
GLU
GLU
GLU
155
155
155
N
1
-17.89
2.70
111.00
93.11
A
A
A
N
CA
C
GLU
GLU
GLU
163
163
163
N
1
11.28
1.50
119.30
130.58
A
A
A
C
N
CA
ASN
PRO
PRO
176
177
177
Y
1
10.49
1.50
119.30
129.79
B
B
B
C
N
CA
ILE
PRO
PRO
40
41
41
Y
1
7.93
1.10
114.20
122.13
B
B
B
CA
CB
SG
CYS
CYS
CYS
153
153
153
N
1
-16.61
2.70
111.00
94.39
B
B
B
N
CA
C
GLU
GLU
GLU
155
155
155
N
1
-17.94
2.70
111.00
93.06
B
B
B
N
CA
C
GLU
GLU
GLU
163
163
163
N
1
9.01
1.50
119.30
128.31
B
B
B
C
N
CA
MET
PRO
PRO
173
174
174
Y
1
10.44
1.50
119.30
129.74
B
B
B
C
N
CA
ASN
PRO
PRO
176
177
177
Y
1
A
GLU
35
-115.19
75.96
1
A
GLU
37
-150.36
82.71
1
A
ASN
43
78.90
-21.28
1
A
CYS
50
-163.35
94.06
1
A
ASN
77
54.25
14.55
1
A
GLU
84
-37.65
-33.42
1
A
PHE
96
-100.87
-166.40
1
A
TYR
119
175.85
135.51
1
A
SER
154
179.79
156.56
1
A
GLN
156
-169.04
55.05
1
A
ASP
157
-151.94
-25.21
1
A
PRO
161
-45.23
166.33
1
A
VAL
172
-29.29
133.33
1
A
SER
179
73.18
174.57
1
A
ARG
181
165.96
-87.11
1
A
ALA
182
166.54
-31.38
1
A
SER
184
-60.54
23.20
1
A
ASN
191
-164.04
90.33
1
A
PRO
192
-45.97
-3.17
1
A
ASP
200
177.46
87.99
1
A
GLU
209
-65.43
90.66
1
B
GLU
35
-115.28
75.97
1
B
GLU
37
-150.32
82.70
1
B
ASN
43
78.95
-21.32
1
B
CYS
50
-163.39
94.12
1
B
GLU
84
-37.78
-33.34
1
B
PHE
96
-100.84
-166.39
1
B
TYR
119
175.80
135.50
1
B
SER
154
179.75
156.56
1
B
GLN
156
-169.17
48.29
1
B
ASP
157
-140.20
-25.77
1
B
PRO
161
-45.36
166.34
1
B
VAL
172
-29.40
133.34
1
B
SER
179
76.49
70.33
1
B
THR
180
35.58
9.38
1
B
ALA
182
-59.10
-8.04
1
B
SER
184
-32.26
-37.65
1
B
ASN
191
-164.09
90.31
1
B
PRO
192
-45.92
-3.19
1
B
ASP
200
177.51
88.17
1
B
GLU
209
-65.57
90.61
0.305
0.22
0.2201
2.90
30.
970
11454
9736
10
random
1
MOLECULAR REPLACEMENT
murine JAM1 structure
Engh & Huber
2.90
30.
124
3299
0
0
3175
0.02
2.7
2.90
30.0
1NBQ
11454
9736
3
1,2
85.1
2.90
3.10
51
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.851
Junctional adhesion molecule 1
Crystal Structure of Human Junctional Adhesion Molecule Type 1
1
N
N
1
N
N
2
N
N
2
N
N
A
SER
203
A
SER
179
HELX_P
A
THR
207
A
THR
183
5
1
5
B
SER
203
B
SER
179
HELX_P
B
THR
207
B
THR
183
5
2
5
disulf
2.060
A
CYS
50
A
SG
CYS
26
1_555
A
CYS
109
A
SG
CYS
85
1_555
disulf
2.059
A
CYS
153
A
SG
CYS
129
1_555
A
CYS
212
A
SG
CYS
188
1_555
disulf
2.060
B
CYS
50
B
SG
CYS
26
1_555
B
CYS
109
B
SG
CYS
85
1_555
disulf
2.058
B
CYS
153
B
SG
CYS
129
1_555
B
CYS
212
B
SG
CYS
188
1_555
IMMUNE SYSTEM
reovirus receptor, adhesion molecule, tight junction formation, immunoglobulin superfamily, IMMUNE SYSTEM
A
SER
159
A
SER
135
1
A
PRO
160
A
PRO
136
-0.63
A
ASP
200
A
ASP
176
1
A
PRO
201
A
PRO
177
0.39
B
SER
159
B
SER
135
1
B
PRO
160
B
PRO
136
-0.79
B
ASP
200
B
ASP
176
1
B
PRO
201
B
PRO
177
0.09
JAM1_HUMAN
UNP
1
27
Q9Y624
GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT
YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS
SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE
27
233
1NBQ
27
233
Q9Y624
A
1
3
209
27
233
1NBQ
27
233
Q9Y624
B
1
3
209
1
CLONING ARTIFACT
ALA
25
1NBQ
A
Q9Y624
UNP
1
1
CLONING ARTIFACT
MET
26
1NBQ
A
Q9Y624
UNP
2
2
CLONING ARTIFACT
ALA
25
1NBQ
B
Q9Y624
UNP
1
2
CLONING ARTIFACT
MET
26
1NBQ
B
Q9Y624
UNP
2
2
2
3
4
4
2
2
2
3
2
2
3
4
4
2
2
2
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
30
A
THR
6
A
HIS
32
A
HIS
8
A
ALA
51
A
ALA
27
A
SER
53
A
SER
29
A
ILE
40
A
ILE
16
A
PRO
41
A
PRO
17
A
VAL
128
A
VAL
104
A
LEU
129
A
LEU
105
A
LYS
47
A
LYS
23
A
SER
49
A
SER
25
A
GLY
93
A
GLY
69
A
THR
95
A
THR
71
A
THR
88
A
THR
64
A
LEU
90
A
LEU
66
A
THR
69
A
THR
45
A
LEU
72
A
LEU
48
A
PRO
58
A
PRO
34
A
GLN
66
A
GLN
42
A
THR
106
A
THR
82
A
GLU
113
A
GLU
89
A
TYR
119
A
TYR
95
A
GLY
120
A
GLY
96
A
THR
69
A
THR
45
A
LEU
72
A
LEU
48
A
PRO
58
A
PRO
34
A
GLN
66
A
GLN
42
A
THR
106
A
THR
82
A
GLU
113
A
GLU
89
A
LYS
123
A
LYS
99
A
LYS
125
A
LYS
101
A
CYS
74
A
CYS
50
A
TYR
75
A
TYR
51
A
LYS
78
A
LYS
54
A
ILE
79
A
ILE
55
A
SER
142
A
SER
118
A
THR
144
A
THR
120
A
GLU
230
A
GLU
206
A
VAL
232
A
VAL
208
A
ALA
149
A
ALA
125
A
LEU
151
A
LEU
127
A
LEU
197
A
LEU
173
A
PHE
199
A
PHE
175
A
GLU
163
A
GLU
139
A
LYS
168
A
LYS
144
A
TYR
210
A
TYR
186
A
ARG
215
A
ARG
191
A
MET
222
A
MET
198
A
THR
223
A
THR
199
B
THR
30
B
THR
6
B
HIS
32
B
HIS
8
B
ALA
51
B
ALA
27
B
SER
53
B
SER
29
B
ILE
40
B
ILE
16
B
PRO
41
B
PRO
17
B
VAL
128
B
VAL
104
B
LEU
129
B
LEU
105
B
LYS
47
B
LYS
23
B
SER
49
B
SER
25
B
GLY
93
B
GLY
69
B
THR
95
B
THR
71
B
THR
88
B
THR
64
B
LEU
90
B
LEU
66
B
THR
69
B
THR
45
B
LEU
72
B
LEU
48
B
PRO
58
B
PRO
34
B
GLN
66
B
GLN
42
B
THR
106
B
THR
82
B
GLU
113
B
GLU
89
B
TYR
119
B
TYR
95
B
GLY
120
B
GLY
96
B
THR
69
B
THR
45
B
LEU
72
B
LEU
48
B
PRO
58
B
PRO
34
B
GLN
66
B
GLN
42
B
THR
106
B
THR
82
B
GLU
113
B
GLU
89
B
LYS
123
B
LYS
99
B
LYS
125
B
LYS
101
B
CYS
74
B
CYS
50
B
TYR
75
B
TYR
51
B
LYS
78
B
LYS
54
B
ILE
79
B
ILE
55
B
SER
142
B
SER
118
B
THR
144
B
THR
120
B
GLU
230
B
GLU
206
B
VAL
232
B
VAL
208
B
ALA
149
B
ALA
125
B
LEU
151
B
LEU
127
B
LEU
197
B
LEU
173
B
PHE
199
B
PHE
175
B
GLU
163
B
GLU
139
B
LYS
168
B
LYS
144
B
TYR
210
B
TYR
186
B
ARG
215
B
ARG
191
B
MET
222
B
MET
198
B
THR
223
B
THR
199
5
monoclinic
C 1 2 1