1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kodera, Y. Sato, K. Tsukahara, T. Komatsu, H. Maeda, T. Kohno, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 37 17704 17713 10.1021/bi981818o 9922136 High-resolution solution NMR structure of the minimal active domain of the human immunodeficiency virus type-2 nucleocapsid protein. 1998 10.2210/pdb1nc8/pdb pdb_00001nc8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3389.924 NUCLEOCAPSID PROTEIN RESIDUES 1-29 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no AQQRKVIRCWNCGKEGHSARQCRAPRRQG AQQRKVIRCWNCGKEGHSARQCRAPRRQG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus sample 11709 Human immunodeficiency virus 2 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-05-25 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-05-14 REL ZN ZINC ION 100 15 NOESY COSY TOCSY 5.8 288 K simulated annealing BRUNGER refinement X-PLOR 3.1 structure solution X-PLOR 3.1 500 Bruker DMX500 ZN 30 2 ZN ZN 30 A ALA 1 n 1 ALA 1 A GLN 2 n 2 GLN 2 A GLN 3 n 3 GLN 3 A ARG 4 n 4 ARG 4 A LYS 5 n 5 LYS 5 A VAL 6 n 6 VAL 6 A ILE 7 n 7 ILE 7 A ARG 8 n 8 ARG 8 A CYS 9 n 9 CYS 9 A TRP 10 n 10 TRP 10 A ASN 11 n 11 ASN 11 A CYS 12 n 12 CYS 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A GLU 15 n 15 GLU 15 A GLY 16 n 16 GLY 16 A HIS 17 n 17 HIS 17 A SER 18 n 18 SER 18 A ALA 19 n 19 ALA 19 A ARG 20 n 20 ARG 20 A GLN 21 n 21 GLN 21 A CYS 22 n 22 CYS 22 A ARG 23 n 23 ARG 23 A ALA 24 n 24 ALA 24 A PRO 25 n 25 PRO 25 A ARG 26 n 26 ARG 26 A ARG 27 n 27 ARG 27 A GLN 28 n 28 GLN 28 A GLY 29 n 29 GLY 29 A author_defined_assembly 1 monomeric A CYS 9 A SG CYS 9 1_555 A ZN 30 B ZN ZN 1_555 A CYS 12 A SG CYS 12 1_555 86.9 A CYS 9 A SG CYS 9 1_555 A ZN 30 B ZN ZN 1_555 A HIS 17 A CE1 HIS 17 1_555 96.3 A CYS 12 A SG CYS 12 1_555 A ZN 30 B ZN ZN 1_555 A HIS 17 A CE1 HIS 17 1_555 174.7 A CYS 9 A SG CYS 9 1_555 A ZN 30 B ZN ZN 1_555 A HIS 17 A NE2 HIS 17 1_555 69.3 A CYS 12 A SG CYS 12 1_555 A ZN 30 B ZN ZN 1_555 A HIS 17 A NE2 HIS 17 1_555 144.0 A HIS 17 A CE1 HIS 17 1_555 A ZN 30 B ZN ZN 1_555 A HIS 17 A NE2 HIS 17 1_555 41.3 A CYS 9 A SG CYS 9 1_555 A ZN 30 B ZN ZN 1_555 A CYS 22 A SG CYS 22 1_555 68.4 A CYS 12 A SG CYS 12 1_555 A ZN 30 B ZN ZN 1_555 A CYS 22 A SG CYS 22 1_555 91.2 A HIS 17 A CE1 HIS 17 1_555 A ZN 30 B ZN ZN 1_555 A CYS 22 A SG CYS 22 1_555 93.9 A HIS 17 A NE2 HIS 17 1_555 A ZN 30 B ZN ZN 1_555 A CYS 22 A SG CYS 22 1_555 55.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HE1 ZN HIS ZN 17 30 1.20 1 A A NE2 SG HIS CYS 17 22 2.02 5 A A HB2 ZN LYS ZN 14 30 1.55 5 A A NE2 SG HIS CYS 17 22 2.05 6 A A HE1 ZN HIS ZN 17 30 1.20 6 A A NE2 SG HIS CYS 17 22 2.10 6 A A SG NE2 CYS HIS 9 17 2.18 7 A A HE1 ZN HIS ZN 17 30 1.54 8 A A HE1 ZN HIS ZN 17 30 1.54 8 A A NE2 SG HIS CYS 17 22 2.15 10 A A HE1 ZN HIS ZN 17 30 1.14 10 A A NE2 SG HIS CYS 17 22 2.16 11 A A HE1 ZN HIS ZN 17 30 1.07 11 A A NE2 SG HIS CYS 17 22 2.08 12 A A HE1 ZN HIS ZN 17 30 1.21 13 A A HE1 ZN HIS ZN 17 30 1.10 13 A A NE2 SG HIS CYS 17 22 2.08 14 A A NE2 SG HIS CYS 17 22 2.14 15 A A NE2 SG HIS CYS 17 22 2.04 1 A ARG 4 0.317 SIDE CHAIN 1 A ARG 8 0.267 SIDE CHAIN 1 A ARG 20 0.285 SIDE CHAIN 1 A ARG 23 0.183 SIDE CHAIN 1 A ARG 26 0.306 SIDE CHAIN 1 A ARG 27 0.313 SIDE CHAIN 2 A ARG 4 0.230 SIDE CHAIN 2 A ARG 8 0.311 SIDE CHAIN 2 A ARG 20 0.197 SIDE CHAIN 2 A ARG 23 0.214 SIDE CHAIN 2 A ARG 26 0.311 SIDE CHAIN 2 A ARG 27 0.180 SIDE CHAIN 3 A ARG 8 0.270 SIDE CHAIN 3 A ARG 20 0.181 SIDE CHAIN 3 A ARG 26 0.277 SIDE CHAIN 3 A ARG 27 0.247 SIDE CHAIN 4 A ARG 4 0.202 SIDE CHAIN 4 A ARG 8 0.271 SIDE CHAIN 4 A ARG 20 0.202 SIDE CHAIN 4 A ARG 26 0.317 SIDE CHAIN 4 A ARG 27 0.150 SIDE CHAIN 5 A ARG 8 0.284 SIDE CHAIN 5 A ARG 20 0.294 SIDE CHAIN 5 A ARG 23 0.239 SIDE CHAIN 5 A ARG 27 0.089 SIDE CHAIN 6 A ARG 4 0.250 SIDE CHAIN 6 A ARG 8 0.310 SIDE CHAIN 6 A ARG 20 0.180 SIDE CHAIN 6 A ARG 23 0.269 SIDE CHAIN 6 A ARG 27 0.217 SIDE CHAIN 7 A ARG 4 0.202 SIDE CHAIN 7 A ARG 8 0.293 SIDE CHAIN 7 A ARG 20 0.207 SIDE CHAIN 7 A ARG 23 0.310 SIDE CHAIN 7 A ARG 26 0.106 SIDE CHAIN 7 A ARG 27 0.222 SIDE CHAIN 8 A ARG 4 0.108 SIDE CHAIN 8 A ARG 8 0.211 SIDE CHAIN 8 A ARG 20 0.222 SIDE CHAIN 8 A ARG 23 0.273 SIDE CHAIN 8 A ARG 27 0.315 SIDE CHAIN 9 A ARG 4 0.300 SIDE CHAIN 9 A ARG 8 0.231 SIDE CHAIN 9 A ARG 20 0.224 SIDE CHAIN 9 A ARG 23 0.317 SIDE CHAIN 9 A ARG 26 0.124 SIDE CHAIN 9 A ARG 27 0.318 SIDE CHAIN 10 A ARG 4 0.272 SIDE CHAIN 10 A ARG 8 0.317 SIDE CHAIN 10 A ARG 20 0.299 SIDE CHAIN 10 A ARG 23 0.288 SIDE CHAIN 10 A ARG 26 0.306 SIDE CHAIN 10 A ARG 27 0.185 SIDE CHAIN 11 A ARG 4 0.264 SIDE CHAIN 11 A ARG 8 0.211 SIDE CHAIN 11 A ARG 23 0.315 SIDE CHAIN 11 A ARG 26 0.303 SIDE CHAIN 11 A ARG 27 0.215 SIDE CHAIN 12 A ARG 4 0.278 SIDE CHAIN 12 A ARG 8 0.280 SIDE CHAIN 12 A ARG 20 0.274 SIDE CHAIN 12 A ARG 23 0.262 SIDE CHAIN 12 A ARG 26 0.248 SIDE CHAIN 12 A ARG 27 0.274 SIDE CHAIN 13 A ARG 4 0.316 SIDE CHAIN 13 A ARG 8 0.207 SIDE CHAIN 13 A ARG 20 0.265 SIDE CHAIN 13 A ARG 23 0.240 SIDE CHAIN 13 A ARG 26 0.258 SIDE CHAIN 13 A ARG 27 0.198 SIDE CHAIN 14 A ARG 8 0.258 SIDE CHAIN 14 A ARG 20 0.308 SIDE CHAIN 14 A ARG 23 0.199 SIDE CHAIN 14 A ARG 26 0.307 SIDE CHAIN 14 A ARG 27 0.087 SIDE CHAIN 15 A ARG 4 0.300 SIDE CHAIN 15 A ARG 8 0.310 SIDE CHAIN 15 A ARG 20 0.110 SIDE CHAIN 15 A ARG 23 0.237 SIDE CHAIN 15 A ARG 26 0.105 SIDE CHAIN 15 A ARG 27 0.262 SIDE CHAIN 1 A GLN 3 44.62 76.23 1 A ASN 11 -41.00 -76.93 1 A ALA 24 -74.86 -74.72 1 A ARG 27 -178.79 85.69 2 A ARG 4 177.21 76.50 2 A CYS 9 -41.78 109.63 2 A ASN 11 -38.91 -79.29 2 A ALA 24 -81.00 -72.86 2 A ARG 27 174.81 105.88 3 A LYS 5 -96.08 -96.77 3 A VAL 6 49.02 176.86 3 A CYS 9 -41.05 98.88 3 A ASN 11 -39.79 -79.12 3 A ALA 24 -71.57 -77.20 3 A ARG 27 166.61 100.02 4 A GLN 2 -71.91 -140.92 4 A CYS 9 -48.43 97.30 4 A ALA 24 -87.37 -76.50 4 A ARG 27 169.46 95.45 4 A GLN 28 59.91 15.89 5 A GLN 3 65.32 72.21 5 A ARG 4 -163.43 85.88 5 A CYS 9 -43.00 108.32 5 A ALA 24 -72.96 -82.08 5 A ARG 27 164.17 95.93 6 A LYS 5 55.09 96.61 6 A CYS 9 -45.77 98.90 6 A ALA 24 -72.02 -77.91 6 A ARG 27 171.14 103.80 7 A GLN 2 -113.57 61.57 7 A LYS 5 -142.19 -43.20 7 A CYS 9 -39.91 93.89 7 A ALA 24 -68.12 -80.05 7 A ARG 27 172.21 113.55 8 A GLN 2 176.39 151.67 8 A LYS 5 168.23 143.09 8 A VAL 6 -43.07 155.42 8 A CYS 9 -43.22 101.55 8 A ALA 24 -82.16 -80.82 8 A ARG 27 172.87 100.92 9 A VAL 6 54.49 166.83 9 A ALA 24 -68.65 -93.91 9 A ARG 27 175.62 103.14 10 A CYS 9 -34.50 97.96 10 A ALA 24 -65.37 -78.52 10 A ARG 27 178.31 111.44 11 A ARG 4 64.92 159.03 11 A GLU 15 -32.20 137.13 11 A CYS 22 -54.94 96.65 11 A ALA 24 -74.42 -76.63 12 A GLN 2 65.53 -85.48 12 A GLU 15 -39.23 128.84 12 A ALA 24 -68.19 -83.22 12 A ARG 27 170.86 97.19 13 A GLN 3 67.39 -177.17 13 A ARG 4 73.55 173.04 13 A LYS 5 -105.55 78.94 13 A CYS 9 -41.88 109.59 13 A ASN 11 -44.72 -70.18 13 A GLU 15 -36.44 138.36 13 A ALA 24 -83.54 -73.05 13 A ARG 27 -179.24 111.63 14 A GLN 2 -114.27 -158.81 14 A GLN 3 60.42 149.83 14 A VAL 6 57.75 118.83 14 A CYS 9 -43.27 98.80 14 A ASN 11 -41.66 -77.54 14 A GLU 15 -29.82 137.03 14 A ARG 27 -162.11 106.69 15 A LYS 5 -178.41 36.64 15 A VAL 6 -43.78 159.09 15 A GLU 15 -36.49 145.88 15 A ALA 24 -80.61 -76.15 15 A ARG 27 -177.23 100.07 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN, 15 STRUCTURES 1 Y N 2 N N A ALA 19 A ALA 19 HELX_P A GLN 21 A GLN 21 5 1 3 disulf 2.588 A CYS 9 A SG CYS 9 1_555 A CYS 22 A SG CYS 22 1_555 metalc 2.300 A CYS 9 A SG CYS 9 1_555 A ZN 30 B ZN ZN 1_555 metalc 2.296 A CYS 12 A SG CYS 12 1_555 A ZN 30 B ZN ZN 1_555 metalc 1.722 A HIS 17 A CE1 HIS 17 1_555 A ZN 30 B ZN ZN 1_555 metalc 1.996 A HIS 17 A NE2 HIS 17 1_555 A ZN 30 B ZN ZN 1_555 metalc 2.302 A CYS 22 A SG CYS 22 1_555 A ZN 30 B ZN ZN 1_555 VIRAL PROTEIN NUCLEOCAPSID PROTEIN, HIV-2, RNA RECOGNITION, ZINC FINGER, Viral protein POL_HV2G1 UNP 1 1 P18042 MGARNSVLRGKKADELEKIRLRPSGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILTVLDPLVPTGSENLKSLFN TVCVIWCLHAEEKVKDTEEAKKLVQRHLGAETGTAEKMPSTSRPTAPPSGRGRNFPVQQTGGGNYIHVPLSPRTLNAWVK LVEDKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINDEAADWDAQHPIPGPLPAGQLRDPRGSDIAG TTSTVEEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWM TQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEALTPPPIPFAAAQQRKVIRCWNCGKEGH SARQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLGMGPWGKKPRNFPVAQAPPGLIPTAPPADPAVDLLERYMQQGREQR EQRERPYKEVTEDLLHLEQGKAPHREATEDLLHLNSLFGKDQ 384 412 1NC8 1 29 P18042 A 1 1 29 CCHC ZINC FINGER. Unknown 14 BINDING SITE FOR RESIDUE ZN A 30 A ZN 30 Software 5 A CYS 9 A CYS 9 14 1_555 A TRP 10 A TRP 10 14 1_555 A ASN 11 A ASN 11 14 1_555 A CYS 12 A CYS 12 14 1_555 A GLY 13 A GLY 13 14 1_555 A LYS 14 A LYS 14 14 1_555 A GLU 15 A GLU 15 14 1_555 A GLY 16 A GLY 16 14 1_555 A HIS 17 A HIS 17 14 1_555 A SER 18 A SER 18 14 1_555 A ALA 19 A ALA 19 14 1_555 A ARG 20 A ARG 20 14 1_555 A GLN 21 A GLN 21 14 1_555 A CYS 22 A CYS 22 14 1_555 A CYS 9 A CYS 9 5 1_555 A CYS 12 A CYS 12 5 1_555 A LYS 14 A LYS 14 5 1_555 A HIS 17 A HIS 17 5 1_555 A CYS 22 A CYS 22 5 1_555 1 P 1