0.012887 0.007440 0.000000 0.000000 0.014880 0.000000 0.000000 0.000000 0.013351 0.00000 0.00000 0.00000 CIS PROLINE - PRO 16 CIS PROLINE - PRO 18 CIS PROLINE - PRO 47 Shapiro, L. Fannon, A.M. Kwong, P.D. Thompson, A. Lehmann, M.S. Grubel, G. Legrand, J.-F. Als-Nielsen, J. Colman, D.R. Hendrickson, W.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 77.600 77.600 74.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Yb 3 173.040 YTTERBIUM (III) ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N YB N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing UK Nature NATUAS 0006 0028-0836 374 327 337 10.1038/374327a0 7885471 Structural basis of cell-cell adhesion by cadherins. 1995 10.2210/pdb1ncg/pdb pdb_00001ncg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1994-08 FUJI x-ray 1 1.0 X4A NSLS SYNCHROTRON NSLS BEAMLINE X4A 12244.817 N-CADHERIN PCR MUTATION D27G, CLONING ARTIFACT GIVES TWO EXTRA RESIDUES (GLY-SER) AT N-TERMINUS (INS(G-2,S-1)) 1 man polymer 173.040 YTTERBIUM (III) ION 1 syn non-polymer 18.015 water 202 nat water no no GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA HAVDINGNQVENPIDIVINVIDMNDNRPEF GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA HAVDINGNQVENPIDIVINVIDMNDNRPEF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli PGEX-2T PGEX-2T 2.66 53.68 pdbx_database_status pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Advisory Database references Derived calculations Other Data collection Database references Derived calculations 1 0 1995-07-10 1 1 2008-03-03 1 2 2011-07-13 1 3 2019-11-20 1 4 2024-02-14 _pdbx_database_status.process_site _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-03-23 REL YB YTTERBIUM (III) ION HOH water THE MODEL INCLUDES ONE YTTERBIUM ION (YB 3+) BOUND AT THE PUTATIVE CALCIUM BINDING SITE. RESIDUE NUMBERING IS FOR THE MATURE PROTEIN. YB 500 2 YB YB 500 A HOH 1 3 HOH HOH 501 A HOH 2 3 HOH HOH 502 A HOH 3 3 HOH HOH 503 A HOH 4 3 HOH HOH 504 A HOH 5 3 HOH HOH 505 A HOH 6 3 HOH HOH 506 A HOH 7 3 HOH HOH 507 A HOH 8 3 HOH HOH 508 A HOH 9 3 HOH HOH 509 A HOH 10 3 HOH HOH 510 A HOH 11 3 HOH HOH 511 A HOH 12 3 HOH HOH 512 A HOH 13 3 HOH HOH 513 A HOH 14 3 HOH HOH 514 A HOH 15 3 HOH HOH 515 A HOH 16 3 HOH HOH 516 A HOH 17 3 HOH HOH 517 A HOH 18 3 HOH HOH 518 A HOH 19 3 HOH HOH 519 A HOH 20 3 HOH HOH 520 A HOH 21 3 HOH HOH 521 A HOH 22 3 HOH HOH 522 A HOH 23 3 HOH HOH 523 A HOH 24 3 HOH HOH 524 A HOH 25 3 HOH HOH 525 A HOH 26 3 HOH HOH 526 A HOH 27 3 HOH HOH 527 A HOH 28 3 HOH HOH 528 A HOH 29 3 HOH HOH 529 A HOH 30 3 HOH HOH 530 A HOH 31 3 HOH HOH 531 A HOH 32 3 HOH HOH 532 A HOH 33 3 HOH HOH 533 A HOH 34 3 HOH HOH 534 A HOH 35 3 HOH HOH 535 A HOH 36 3 HOH HOH 536 A HOH 37 3 HOH HOH 537 A HOH 38 3 HOH HOH 538 A HOH 39 3 HOH HOH 539 A HOH 40 3 HOH HOH 540 A HOH 41 3 HOH HOH 541 A HOH 42 3 HOH HOH 542 A HOH 43 3 HOH HOH 543 A HOH 44 3 HOH HOH 544 A HOH 45 3 HOH HOH 545 A HOH 46 3 HOH HOH 546 A HOH 47 3 HOH HOH 547 A HOH 48 3 HOH HOH 548 A HOH 49 3 HOH HOH 549 A HOH 50 3 HOH HOH 550 A HOH 51 3 HOH HOH 551 A HOH 52 3 HOH HOH 552 A HOH 53 3 HOH HOH 553 A HOH 54 3 HOH HOH 554 A HOH 55 3 HOH HOH 555 A HOH 56 3 HOH HOH 556 A HOH 57 3 HOH HOH 557 A HOH 58 3 HOH HOH 558 A HOH 59 3 HOH HOH 559 A HOH 60 3 HOH HOH 560 A HOH 61 3 HOH HOH 561 A HOH 62 3 HOH HOH 562 A HOH 63 3 HOH HOH 563 A HOH 64 3 HOH HOH 564 A HOH 65 3 HOH HOH 565 A HOH 66 3 HOH HOH 566 A HOH 67 3 HOH HOH 567 A HOH 68 3 HOH HOH 568 A HOH 69 3 HOH HOH 569 A HOH 70 3 HOH HOH 570 A HOH 71 3 HOH HOH 571 A HOH 72 3 HOH HOH 572 A HOH 73 3 HOH HOH 573 A HOH 74 3 HOH HOH 574 A HOH 75 3 HOH HOH 575 A HOH 76 3 HOH HOH 576 A HOH 77 3 HOH HOH 577 A HOH 78 3 HOH HOH 578 A HOH 79 3 HOH HOH 579 A HOH 80 3 HOH HOH 580 A HOH 81 3 HOH HOH 581 A HOH 82 3 HOH HOH 582 A HOH 83 3 HOH HOH 583 A HOH 84 3 HOH HOH 584 A HOH 85 3 HOH HOH 585 A HOH 86 3 HOH HOH 586 A HOH 87 3 HOH HOH 587 A HOH 88 3 HOH HOH 588 A HOH 89 3 HOH HOH 589 A HOH 90 3 HOH HOH 590 A HOH 91 3 HOH HOH 591 A HOH 92 3 HOH HOH 592 A HOH 93 3 HOH HOH 593 A HOH 94 3 HOH HOH 594 A HOH 95 3 HOH HOH 595 A HOH 96 3 HOH HOH 596 A HOH 97 3 HOH HOH 597 A HOH 98 3 HOH HOH 598 A HOH 99 3 HOH HOH 599 A HOH 100 3 HOH HOH 600 A HOH 101 3 HOH HOH 601 A HOH 102 3 HOH HOH 602 A HOH 103 3 HOH HOH 603 A HOH 104 3 HOH HOH 604 A HOH 105 3 HOH HOH 605 A HOH 106 3 HOH HOH 606 A HOH 107 3 HOH HOH 607 A HOH 108 3 HOH HOH 608 A HOH 109 3 HOH HOH 609 A HOH 110 3 HOH HOH 610 A HOH 111 3 HOH HOH 611 A HOH 112 3 HOH HOH 612 A HOH 113 3 HOH HOH 613 A HOH 114 3 HOH HOH 614 A HOH 115 3 HOH HOH 615 A HOH 116 3 HOH HOH 616 A HOH 117 3 HOH HOH 617 A HOH 118 3 HOH HOH 618 A HOH 119 3 HOH HOH 619 A HOH 120 3 HOH HOH 620 A HOH 121 3 HOH HOH 621 A HOH 122 3 HOH HOH 622 A HOH 123 3 HOH HOH 623 A HOH 124 3 HOH HOH 624 A HOH 125 3 HOH HOH 625 A HOH 126 3 HOH HOH 626 A HOH 127 3 HOH HOH 627 A HOH 128 3 HOH HOH 628 A HOH 129 3 HOH HOH 629 A HOH 130 3 HOH HOH 630 A HOH 131 3 HOH HOH 631 A HOH 132 3 HOH HOH 632 A HOH 133 3 HOH HOH 633 A HOH 134 3 HOH HOH 634 A HOH 135 3 HOH HOH 635 A HOH 136 3 HOH HOH 636 A HOH 137 3 HOH HOH 637 A HOH 138 3 HOH HOH 638 A HOH 139 3 HOH HOH 639 A HOH 140 3 HOH HOH 640 A HOH 141 3 HOH HOH 641 A HOH 142 3 HOH HOH 642 A HOH 143 3 HOH HOH 643 A HOH 144 3 HOH HOH 644 A HOH 145 3 HOH HOH 645 A HOH 146 3 HOH HOH 646 A HOH 147 3 HOH HOH 647 A HOH 148 3 HOH HOH 648 A HOH 149 3 HOH HOH 649 A HOH 150 3 HOH HOH 650 A HOH 151 3 HOH HOH 651 A HOH 152 3 HOH HOH 652 A HOH 153 3 HOH HOH 653 A HOH 154 3 HOH HOH 654 A HOH 155 3 HOH HOH 655 A HOH 156 3 HOH HOH 656 A HOH 157 3 HOH HOH 657 A HOH 158 3 HOH HOH 658 A HOH 159 3 HOH HOH 659 A HOH 160 3 HOH HOH 660 A HOH 161 3 HOH HOH 661 A HOH 162 3 HOH HOH 662 A HOH 163 3 HOH HOH 663 A HOH 164 3 HOH HOH 664 A HOH 165 3 HOH HOH 665 A HOH 166 3 HOH HOH 666 A HOH 167 3 HOH HOH 667 A HOH 168 3 HOH HOH 668 A HOH 169 3 HOH HOH 669 A HOH 170 3 HOH HOH 670 A HOH 171 3 HOH HOH 671 A HOH 172 3 HOH HOH 672 A HOH 173 3 HOH HOH 673 A HOH 174 3 HOH HOH 674 A HOH 175 3 HOH HOH 675 A HOH 176 3 HOH HOH 676 A HOH 177 3 HOH HOH 677 A HOH 178 3 HOH HOH 678 A HOH 179 3 HOH HOH 679 A HOH 180 3 HOH HOH 680 A HOH 181 3 HOH HOH 681 A HOH 182 3 HOH HOH 682 A HOH 183 3 HOH HOH 683 A HOH 184 3 HOH HOH 684 A HOH 185 3 HOH HOH 685 A HOH 186 3 HOH HOH 686 A HOH 187 3 HOH HOH 687 A HOH 188 3 HOH HOH 688 A HOH 189 3 HOH HOH 689 A HOH 190 3 HOH HOH 690 A HOH 191 3 HOH HOH 691 A HOH 192 3 HOH HOH 692 A HOH 193 3 HOH HOH 693 A HOH 194 3 HOH HOH 694 A HOH 195 3 HOH HOH 695 A HOH 196 3 HOH HOH 696 A HOH 197 3 HOH HOH 697 A HOH 198 3 HOH HOH 698 A HOH 199 3 HOH HOH 699 A HOH 200 3 HOH HOH 700 A HOH 201 3 HOH HOH 701 A HOH 202 3 HOH HOH 702 A n 1 -1 A n 2 0 A ASP 1 n 3 ASP 1 A TRP 2 n 4 TRP 2 A VAL 3 n 5 VAL 3 A ILE 4 n 6 ILE 4 A PRO 5 n 7 PRO 5 A PRO 6 n 8 PRO 6 A ILE 7 n 9 ILE 7 A ASN 8 n 10 ASN 8 A LEU 9 n 11 LEU 9 A PRO 10 n 12 PRO 10 A GLU 11 n 13 GLU 11 A ASN 12 n 14 ASN 12 A SER 13 n 15 SER 13 A ARG 14 n 16 ARG 14 A GLY 15 n 17 GLY 15 A PRO 16 n 18 PRO 16 A PHE 17 n 19 PHE 17 A PRO 18 n 20 PRO 18 A GLN 19 n 21 GLN 19 A GLU 20 n 22 GLU 20 A LEU 21 n 23 LEU 21 A VAL 22 n 24 VAL 22 A ARG 23 n 25 ARG 23 A ILE 24 n 26 ILE 24 A ARG 25 n 27 ARG 25 A SER 26 n 28 SER 26 A GLY 27 n 29 GLY 27 A ARG 28 n 30 ARG 28 A ASP 29 n 31 ASP 29 A LYS 30 n 32 LYS 30 A ASN 31 n 33 ASN 31 A LEU 32 n 34 LEU 32 A SER 33 n 35 SER 33 A LEU 34 n 36 LEU 34 A ARG 35 n 37 ARG 35 A TYR 36 n 38 TYR 36 A SER 37 n 39 SER 37 A VAL 38 n 40 VAL 38 A THR 39 n 41 THR 39 A GLY 40 n 42 GLY 40 A PRO 41 n 43 PRO 41 A GLY 42 n 44 GLY 42 A ALA 43 n 45 ALA 43 A ASP 44 n 46 ASP 44 A GLN 45 n 47 GLN 45 A PRO 46 n 48 PRO 46 A PRO 47 n 49 PRO 47 A THR 48 n 50 THR 48 A GLY 49 n 51 GLY 49 A ILE 50 n 52 ILE 50 A PHE 51 n 53 PHE 51 A ILE 52 n 54 ILE 52 A ILE 53 n 55 ILE 53 A ASN 54 n 56 ASN 54 A PRO 55 n 57 PRO 55 A ILE 56 n 58 ILE 56 A SER 57 n 59 SER 57 A GLY 58 n 60 GLY 58 A GLN 59 n 61 GLN 59 A LEU 60 n 62 LEU 60 A SER 61 n 63 SER 61 A VAL 62 n 64 VAL 62 A THR 63 n 65 THR 63 A LYS 64 n 66 LYS 64 A PRO 65 n 67 PRO 65 A LEU 66 n 68 LEU 66 A ASP 67 n 69 ASP 67 A ARG 68 n 70 ARG 68 A GLU 69 n 71 GLU 69 A LEU 70 n 72 LEU 70 A ILE 71 n 73 ILE 71 A ALA 72 n 74 ALA 72 A ARG 73 n 75 ARG 73 A PHE 74 n 76 PHE 74 A HIS 75 n 77 HIS 75 A LEU 76 n 78 LEU 76 A ARG 77 n 79 ARG 77 A ALA 78 n 80 ALA 78 A HIS 79 n 81 HIS 79 A ALA 80 n 82 ALA 80 A VAL 81 n 83 VAL 81 A ASP 82 n 84 ASP 82 A ILE 83 n 85 ILE 83 A ASN 84 n 86 ASN 84 A GLY 85 n 87 GLY 85 A ASN 86 n 88 ASN 86 A GLN 87 n 89 GLN 87 A VAL 88 n 90 VAL 88 A GLU 89 n 91 GLU 89 A ASN 90 n 92 ASN 90 A PRO 91 n 93 PRO 91 A ILE 92 n 94 ILE 92 A ASP 93 n 95 ASP 93 A ILE 94 n 96 ILE 94 A VAL 95 n 97 VAL 95 A ILE 96 n 98 ILE 96 A ASN 97 n 99 ASN 97 A VAL 98 n 100 VAL 98 A ILE 99 n 101 ILE 99 A n 102 100 A n 103 101 A n 104 102 A n 105 103 A n 106 104 A n 107 105 A n 108 106 A n 109 107 A n 110 108 A author_defined_assembly 2 dimeric A GLU 11 A OE1 GLU 13 1_555 A YB 500 B YB YB 1_555 A GLU 11 A OE2 GLU 13 1_555 58.5 A GLU 11 A OE1 GLU 13 1_555 A YB 500 B YB YB 1_555 A GLU 69 A OE1 GLU 71 1_555 70.5 A GLU 11 A OE2 GLU 13 1_555 A YB 500 B YB YB 1_555 A GLU 69 A OE1 GLU 71 1_555 120.5 A GLU 11 A OE1 GLU 13 1_555 A YB 500 B YB YB 1_555 A HOH 525 C O HOH 1_555 77.4 A GLU 11 A OE2 GLU 13 1_555 A YB 500 B YB YB 1_555 A HOH 525 C O HOH 1_555 113.0 A GLU 69 A OE1 GLU 71 1_555 A YB 500 B YB YB 1_555 A HOH 525 C O HOH 1_555 80.7 A GLU 11 A OE1 GLU 13 1_555 A YB 500 B YB YB 1_555 A HOH 562 C O HOH 1_555 86.2 A GLU 11 A OE2 GLU 13 1_555 A YB 500 B YB YB 1_555 A HOH 562 C O HOH 1_555 79.7 A GLU 69 A OE1 GLU 71 1_555 A YB 500 B YB YB 1_555 A HOH 562 C O HOH 1_555 67.9 A HOH 525 C O HOH 1_555 A YB 500 B YB YB 1_555 A HOH 562 C O HOH 1_555 148.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 7 A O ILE 9 A N ASN 97 A N ASN 99 A O ILE 92 A O ILE 94 A N ALA 78 A N ALA 80 A O ARG 77 A O ARG 79 A N THR 39 A N THR 41 A O ILE 52 A O ILE 54 A N SER 61 A N SER 63 A O LEU 60 A O LEU 62 A N VAL 22 A N VAL 24 1 A CB ASP 1 A CB ASP 3 1 Y 1 A CG ASP 1 A CG ASP 3 1 Y 1 A OD1 ASP 1 A OD1 ASP 3 1 Y 1 A OD2 ASP 1 A OD2 ASP 3 1 Y 1 A CD ARG 35 A CD ARG 37 1 Y 1 A NE ARG 35 A NE ARG 37 1 Y 1 A CZ ARG 35 A CZ ARG 37 1 Y 1 A NH1 ARG 35 A NH1 ARG 37 1 Y 1 A NH2 ARG 35 A NH2 ARG 37 1 Y 1 A GLY -1 A GLY 1 1 Y 1 A SER 0 A SER 2 1 Y 1 A ASP 100 A ASP 102 1 Y 1 A MET 101 A MET 103 1 Y 1 A ASN 102 A ASN 104 1 Y 1 A ASP 103 A ASP 105 1 Y 1 A ASN 104 A ASN 106 1 Y 1 A ARG 105 A ARG 107 1 Y 1 A PRO 106 A PRO 108 1 Y 1 A GLU 107 A GLU 109 1 Y 1 A PHE 108 A PHE 110 1 Y 1 A A OE2 YB GLU YB 69 500 1.67 1 -3.03 0.50 120.30 117.27 A A A NE CZ NH2 ARG ARG ARG 73 73 73 N 1 A A O O HOH HOH 697 697 0.80 1_555 11_555 1 A A O O HOH HOH 673 673 1.46 1_555 10_665 1 A A O O HOH HOH 675 675 1.48 1_555 10_665 1 A PRO 16 -49.09 157.54 1 A LEU 21 -102.36 -65.26 1 A LEU 32 -174.52 112.90 1 A ALA 43 -121.41 -77.37 26.2 0.201 0.217 0.217 2.1 5.0 17546 92.8 1 2.0 2.1 5.0 202 969 1 0 766 0.015 2.10 1NCG 18803 0.045 1 93.4 model building X-PLOR refinement X-PLOR data reduction DENZO phasing X-PLOR STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS 1 N N 2 N N 3 N N THE ASYMMETRIC UNIT CONTAINS A SINGLE MOLECULE. A CADHERIN STRAND DIMER IS FORMED WITH THE (Y, X, -Z) SYMMETRY MATE. AN ADHESION DIMER IS FORMED WITH THE (1-Y, 1-X, 1/2-Z) SYMMETRY MATE. NOTE THAT THESE TRANSFORMATIONS ARE IN THE NON-ORTHOGONAL HEXAGONAL LATTICE. A GLY 27 A GLY 29 HELX_P A ASN 31 A ASN 33 5 1 5 metalc 2.298 A GLU 11 A OE1 GLU 13 1_555 A YB 500 B YB YB 1_555 metalc 2.013 A GLU 11 A OE2 GLU 13 1_555 A YB 500 B YB YB 1_555 metalc 2.304 A GLU 69 A OE1 GLU 71 1_555 A YB 500 B YB YB 1_555 metalc 2.269 A YB 500 B YB YB 1_555 A HOH 525 C O HOH 1_555 metalc 2.001 A YB 500 B YB YB 1_555 A HOH 562 C O HOH 1_555 CELL ADHESION PROTEIN CADHERIN, CELL ADHESION PROTEIN A GLY 15 A GLY 17 1 A PRO 16 A PRO 18 -0.57 A PHE 17 A PHE 19 1 A PRO 18 A PRO 20 0.44 A PRO 46 A PRO 48 1 A PRO 47 A PRO 49 -0.46 CADH2_MOUSE UNP 1 1 P15116 MCRIAGGRGTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKRD WVIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIV ANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS TATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLD RESPYVQNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINIAALDYDIDPNAGPFAFD LPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGL GTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTVEPDA IKPVGIRRLDERPIHAEPQYPVRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGG DQDYDYLNDWGPRFKKLADMYGGGDD 160 267 1NCG 1 108 P15116 A 1 3 110 1 ASP conflict GLY 27 1NCG A P15116 UNP 186 29 4 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 7 A ILE 9 A PRO 10 A PRO 12 A ILE 92 A ILE 94 A ILE 99 A ILE 101 A ARG 73 A ARG 75 A VAL 81 A VAL 83 A ARG 35 A ARG 37 A THR 39 A THR 41 A PHE 51 A PHE 53 A ILE 53 A ILE 55 A GLN 59 A GLN 61 A VAL 62 A VAL 64 A GLN 19 A GLN 21 A ARG 23 A ARG 25 Unknown 1 BINDING SITE FOR RESIDUE YB A 500 A YB 500 Software 4 A YB 500 B YB 1 1_555 A GLU 11 A GLU 13 4 1_555 A GLU 69 A GLU 71 4 1_555 A HOH 525 C HOH 4 1_555 A HOH 562 C HOH 4 1_555 182 P 63 2 2