0.012887
0.007440
0.000000
0.000000
0.014880
0.000000
0.000000
0.000000
0.013351
0.00000
0.00000
0.00000
CIS PROLINE - PRO 16
CIS PROLINE - PRO 18
CIS PROLINE - PRO 47
Shapiro, L.
Fannon, A.M.
Kwong, P.D.
Thompson, A.
Lehmann, M.S.
Grubel, G.
Legrand, J.-F.
Als-Nielsen, J.
Colman, D.R.
Hendrickson, W.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
77.600
77.600
74.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Yb 3
173.040
YTTERBIUM (III) ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
YB
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
UK
Nature
NATUAS
0006
0028-0836
374
327
337
10.1038/374327a0
7885471
Structural basis of cell-cell adhesion by cadherins.
1995
10.2210/pdb1ncg/pdb
pdb_00001ncg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1994-08
FUJI
x-ray
1
1.0
X4A
NSLS
SYNCHROTRON
NSLS BEAMLINE X4A
12244.817
N-CADHERIN
PCR MUTATION D27G, CLONING ARTIFACT GIVES TWO EXTRA RESIDUES (GLY-SER) AT N-TERMINUS (INS(G-2,S-1))
1
man
polymer
173.040
YTTERBIUM (III) ION
1
syn
non-polymer
18.015
water
202
nat
water
no
no
GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA
HAVDINGNQVENPIDIVINVIDMNDNRPEF
GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA
HAVDINGNQVENPIDIVINVIDMNDNRPEF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
PGEX-2T
PGEX-2T
2.66
53.68
pdbx_database_status
pdbx_struct_conn_angle
pdbx_validate_close_contact
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Advisory
Database references
Derived calculations
Other
Data collection
Database references
Derived calculations
1
0
1995-07-10
1
1
2008-03-03
1
2
2011-07-13
1
3
2019-11-20
1
4
2024-02-14
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-03-23
REL
YB
YTTERBIUM (III) ION
HOH
water
THE MODEL INCLUDES ONE YTTERBIUM ION (YB 3+) BOUND AT THE
PUTATIVE CALCIUM BINDING SITE.
RESIDUE NUMBERING IS FOR THE MATURE PROTEIN.
YB
500
2
YB
YB
500
A
HOH
1
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
3
3
HOH
HOH
503
A
HOH
4
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
8
3
HOH
HOH
508
A
HOH
9
3
HOH
HOH
509
A
HOH
10
3
HOH
HOH
510
A
HOH
11
3
HOH
HOH
511
A
HOH
12
3
HOH
HOH
512
A
HOH
13
3
HOH
HOH
513
A
HOH
14
3
HOH
HOH
514
A
HOH
15
3
HOH
HOH
515
A
HOH
16
3
HOH
HOH
516
A
HOH
17
3
HOH
HOH
517
A
HOH
18
3
HOH
HOH
518
A
HOH
19
3
HOH
HOH
519
A
HOH
20
3
HOH
HOH
520
A
HOH
21
3
HOH
HOH
521
A
HOH
22
3
HOH
HOH
522
A
HOH
23
3
HOH
HOH
523
A
HOH
24
3
HOH
HOH
524
A
HOH
25
3
HOH
HOH
525
A
HOH
26
3
HOH
HOH
526
A
HOH
27
3
HOH
HOH
527
A
HOH
28
3
HOH
HOH
528
A
HOH
29
3
HOH
HOH
529
A
HOH
30
3
HOH
HOH
530
A
HOH
31
3
HOH
HOH
531
A
HOH
32
3
HOH
HOH
532
A
HOH
33
3
HOH
HOH
533
A
HOH
34
3
HOH
HOH
534
A
HOH
35
3
HOH
HOH
535
A
HOH
36
3
HOH
HOH
536
A
HOH
37
3
HOH
HOH
537
A
HOH
38
3
HOH
HOH
538
A
HOH
39
3
HOH
HOH
539
A
HOH
40
3
HOH
HOH
540
A
HOH
41
3
HOH
HOH
541
A
HOH
42
3
HOH
HOH
542
A
HOH
43
3
HOH
HOH
543
A
HOH
44
3
HOH
HOH
544
A
HOH
45
3
HOH
HOH
545
A
HOH
46
3
HOH
HOH
546
A
HOH
47
3
HOH
HOH
547
A
HOH
48
3
HOH
HOH
548
A
HOH
49
3
HOH
HOH
549
A
HOH
50
3
HOH
HOH
550
A
HOH
51
3
HOH
HOH
551
A
HOH
52
3
HOH
HOH
552
A
HOH
53
3
HOH
HOH
553
A
HOH
54
3
HOH
HOH
554
A
HOH
55
3
HOH
HOH
555
A
HOH
56
3
HOH
HOH
556
A
HOH
57
3
HOH
HOH
557
A
HOH
58
3
HOH
HOH
558
A
HOH
59
3
HOH
HOH
559
A
HOH
60
3
HOH
HOH
560
A
HOH
61
3
HOH
HOH
561
A
HOH
62
3
HOH
HOH
562
A
HOH
63
3
HOH
HOH
563
A
HOH
64
3
HOH
HOH
564
A
HOH
65
3
HOH
HOH
565
A
HOH
66
3
HOH
HOH
566
A
HOH
67
3
HOH
HOH
567
A
HOH
68
3
HOH
HOH
568
A
HOH
69
3
HOH
HOH
569
A
HOH
70
3
HOH
HOH
570
A
HOH
71
3
HOH
HOH
571
A
HOH
72
3
HOH
HOH
572
A
HOH
73
3
HOH
HOH
573
A
HOH
74
3
HOH
HOH
574
A
HOH
75
3
HOH
HOH
575
A
HOH
76
3
HOH
HOH
576
A
HOH
77
3
HOH
HOH
577
A
HOH
78
3
HOH
HOH
578
A
HOH
79
3
HOH
HOH
579
A
HOH
80
3
HOH
HOH
580
A
HOH
81
3
HOH
HOH
581
A
HOH
82
3
HOH
HOH
582
A
HOH
83
3
HOH
HOH
583
A
HOH
84
3
HOH
HOH
584
A
HOH
85
3
HOH
HOH
585
A
HOH
86
3
HOH
HOH
586
A
HOH
87
3
HOH
HOH
587
A
HOH
88
3
HOH
HOH
588
A
HOH
89
3
HOH
HOH
589
A
HOH
90
3
HOH
HOH
590
A
HOH
91
3
HOH
HOH
591
A
HOH
92
3
HOH
HOH
592
A
HOH
93
3
HOH
HOH
593
A
HOH
94
3
HOH
HOH
594
A
HOH
95
3
HOH
HOH
595
A
HOH
96
3
HOH
HOH
596
A
HOH
97
3
HOH
HOH
597
A
HOH
98
3
HOH
HOH
598
A
HOH
99
3
HOH
HOH
599
A
HOH
100
3
HOH
HOH
600
A
HOH
101
3
HOH
HOH
601
A
HOH
102
3
HOH
HOH
602
A
HOH
103
3
HOH
HOH
603
A
HOH
104
3
HOH
HOH
604
A
HOH
105
3
HOH
HOH
605
A
HOH
106
3
HOH
HOH
606
A
HOH
107
3
HOH
HOH
607
A
HOH
108
3
HOH
HOH
608
A
HOH
109
3
HOH
HOH
609
A
HOH
110
3
HOH
HOH
610
A
HOH
111
3
HOH
HOH
611
A
HOH
112
3
HOH
HOH
612
A
HOH
113
3
HOH
HOH
613
A
HOH
114
3
HOH
HOH
614
A
HOH
115
3
HOH
HOH
615
A
HOH
116
3
HOH
HOH
616
A
HOH
117
3
HOH
HOH
617
A
HOH
118
3
HOH
HOH
618
A
HOH
119
3
HOH
HOH
619
A
HOH
120
3
HOH
HOH
620
A
HOH
121
3
HOH
HOH
621
A
HOH
122
3
HOH
HOH
622
A
HOH
123
3
HOH
HOH
623
A
HOH
124
3
HOH
HOH
624
A
HOH
125
3
HOH
HOH
625
A
HOH
126
3
HOH
HOH
626
A
HOH
127
3
HOH
HOH
627
A
HOH
128
3
HOH
HOH
628
A
HOH
129
3
HOH
HOH
629
A
HOH
130
3
HOH
HOH
630
A
HOH
131
3
HOH
HOH
631
A
HOH
132
3
HOH
HOH
632
A
HOH
133
3
HOH
HOH
633
A
HOH
134
3
HOH
HOH
634
A
HOH
135
3
HOH
HOH
635
A
HOH
136
3
HOH
HOH
636
A
HOH
137
3
HOH
HOH
637
A
HOH
138
3
HOH
HOH
638
A
HOH
139
3
HOH
HOH
639
A
HOH
140
3
HOH
HOH
640
A
HOH
141
3
HOH
HOH
641
A
HOH
142
3
HOH
HOH
642
A
HOH
143
3
HOH
HOH
643
A
HOH
144
3
HOH
HOH
644
A
HOH
145
3
HOH
HOH
645
A
HOH
146
3
HOH
HOH
646
A
HOH
147
3
HOH
HOH
647
A
HOH
148
3
HOH
HOH
648
A
HOH
149
3
HOH
HOH
649
A
HOH
150
3
HOH
HOH
650
A
HOH
151
3
HOH
HOH
651
A
HOH
152
3
HOH
HOH
652
A
HOH
153
3
HOH
HOH
653
A
HOH
154
3
HOH
HOH
654
A
HOH
155
3
HOH
HOH
655
A
HOH
156
3
HOH
HOH
656
A
HOH
157
3
HOH
HOH
657
A
HOH
158
3
HOH
HOH
658
A
HOH
159
3
HOH
HOH
659
A
HOH
160
3
HOH
HOH
660
A
HOH
161
3
HOH
HOH
661
A
HOH
162
3
HOH
HOH
662
A
HOH
163
3
HOH
HOH
663
A
HOH
164
3
HOH
HOH
664
A
HOH
165
3
HOH
HOH
665
A
HOH
166
3
HOH
HOH
666
A
HOH
167
3
HOH
HOH
667
A
HOH
168
3
HOH
HOH
668
A
HOH
169
3
HOH
HOH
669
A
HOH
170
3
HOH
HOH
670
A
HOH
171
3
HOH
HOH
671
A
HOH
172
3
HOH
HOH
672
A
HOH
173
3
HOH
HOH
673
A
HOH
174
3
HOH
HOH
674
A
HOH
175
3
HOH
HOH
675
A
HOH
176
3
HOH
HOH
676
A
HOH
177
3
HOH
HOH
677
A
HOH
178
3
HOH
HOH
678
A
HOH
179
3
HOH
HOH
679
A
HOH
180
3
HOH
HOH
680
A
HOH
181
3
HOH
HOH
681
A
HOH
182
3
HOH
HOH
682
A
HOH
183
3
HOH
HOH
683
A
HOH
184
3
HOH
HOH
684
A
HOH
185
3
HOH
HOH
685
A
HOH
186
3
HOH
HOH
686
A
HOH
187
3
HOH
HOH
687
A
HOH
188
3
HOH
HOH
688
A
HOH
189
3
HOH
HOH
689
A
HOH
190
3
HOH
HOH
690
A
HOH
191
3
HOH
HOH
691
A
HOH
192
3
HOH
HOH
692
A
HOH
193
3
HOH
HOH
693
A
HOH
194
3
HOH
HOH
694
A
HOH
195
3
HOH
HOH
695
A
HOH
196
3
HOH
HOH
696
A
HOH
197
3
HOH
HOH
697
A
HOH
198
3
HOH
HOH
698
A
HOH
199
3
HOH
HOH
699
A
HOH
200
3
HOH
HOH
700
A
HOH
201
3
HOH
HOH
701
A
HOH
202
3
HOH
HOH
702
A
n
1
-1
A
n
2
0
A
ASP
1
n
3
ASP
1
A
TRP
2
n
4
TRP
2
A
VAL
3
n
5
VAL
3
A
ILE
4
n
6
ILE
4
A
PRO
5
n
7
PRO
5
A
PRO
6
n
8
PRO
6
A
ILE
7
n
9
ILE
7
A
ASN
8
n
10
ASN
8
A
LEU
9
n
11
LEU
9
A
PRO
10
n
12
PRO
10
A
GLU
11
n
13
GLU
11
A
ASN
12
n
14
ASN
12
A
SER
13
n
15
SER
13
A
ARG
14
n
16
ARG
14
A
GLY
15
n
17
GLY
15
A
PRO
16
n
18
PRO
16
A
PHE
17
n
19
PHE
17
A
PRO
18
n
20
PRO
18
A
GLN
19
n
21
GLN
19
A
GLU
20
n
22
GLU
20
A
LEU
21
n
23
LEU
21
A
VAL
22
n
24
VAL
22
A
ARG
23
n
25
ARG
23
A
ILE
24
n
26
ILE
24
A
ARG
25
n
27
ARG
25
A
SER
26
n
28
SER
26
A
GLY
27
n
29
GLY
27
A
ARG
28
n
30
ARG
28
A
ASP
29
n
31
ASP
29
A
LYS
30
n
32
LYS
30
A
ASN
31
n
33
ASN
31
A
LEU
32
n
34
LEU
32
A
SER
33
n
35
SER
33
A
LEU
34
n
36
LEU
34
A
ARG
35
n
37
ARG
35
A
TYR
36
n
38
TYR
36
A
SER
37
n
39
SER
37
A
VAL
38
n
40
VAL
38
A
THR
39
n
41
THR
39
A
GLY
40
n
42
GLY
40
A
PRO
41
n
43
PRO
41
A
GLY
42
n
44
GLY
42
A
ALA
43
n
45
ALA
43
A
ASP
44
n
46
ASP
44
A
GLN
45
n
47
GLN
45
A
PRO
46
n
48
PRO
46
A
PRO
47
n
49
PRO
47
A
THR
48
n
50
THR
48
A
GLY
49
n
51
GLY
49
A
ILE
50
n
52
ILE
50
A
PHE
51
n
53
PHE
51
A
ILE
52
n
54
ILE
52
A
ILE
53
n
55
ILE
53
A
ASN
54
n
56
ASN
54
A
PRO
55
n
57
PRO
55
A
ILE
56
n
58
ILE
56
A
SER
57
n
59
SER
57
A
GLY
58
n
60
GLY
58
A
GLN
59
n
61
GLN
59
A
LEU
60
n
62
LEU
60
A
SER
61
n
63
SER
61
A
VAL
62
n
64
VAL
62
A
THR
63
n
65
THR
63
A
LYS
64
n
66
LYS
64
A
PRO
65
n
67
PRO
65
A
LEU
66
n
68
LEU
66
A
ASP
67
n
69
ASP
67
A
ARG
68
n
70
ARG
68
A
GLU
69
n
71
GLU
69
A
LEU
70
n
72
LEU
70
A
ILE
71
n
73
ILE
71
A
ALA
72
n
74
ALA
72
A
ARG
73
n
75
ARG
73
A
PHE
74
n
76
PHE
74
A
HIS
75
n
77
HIS
75
A
LEU
76
n
78
LEU
76
A
ARG
77
n
79
ARG
77
A
ALA
78
n
80
ALA
78
A
HIS
79
n
81
HIS
79
A
ALA
80
n
82
ALA
80
A
VAL
81
n
83
VAL
81
A
ASP
82
n
84
ASP
82
A
ILE
83
n
85
ILE
83
A
ASN
84
n
86
ASN
84
A
GLY
85
n
87
GLY
85
A
ASN
86
n
88
ASN
86
A
GLN
87
n
89
GLN
87
A
VAL
88
n
90
VAL
88
A
GLU
89
n
91
GLU
89
A
ASN
90
n
92
ASN
90
A
PRO
91
n
93
PRO
91
A
ILE
92
n
94
ILE
92
A
ASP
93
n
95
ASP
93
A
ILE
94
n
96
ILE
94
A
VAL
95
n
97
VAL
95
A
ILE
96
n
98
ILE
96
A
ASN
97
n
99
ASN
97
A
VAL
98
n
100
VAL
98
A
ILE
99
n
101
ILE
99
A
n
102
100
A
n
103
101
A
n
104
102
A
n
105
103
A
n
106
104
A
n
107
105
A
n
108
106
A
n
109
107
A
n
110
108
A
author_defined_assembly
2
dimeric
A
GLU
11
A
OE1
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
GLU
11
A
OE2
GLU
13
1_555
58.5
A
GLU
11
A
OE1
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
GLU
69
A
OE1
GLU
71
1_555
70.5
A
GLU
11
A
OE2
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
GLU
69
A
OE1
GLU
71
1_555
120.5
A
GLU
11
A
OE1
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
525
C
O
HOH
1_555
77.4
A
GLU
11
A
OE2
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
525
C
O
HOH
1_555
113.0
A
GLU
69
A
OE1
GLU
71
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
525
C
O
HOH
1_555
80.7
A
GLU
11
A
OE1
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
562
C
O
HOH
1_555
86.2
A
GLU
11
A
OE2
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
562
C
O
HOH
1_555
79.7
A
GLU
69
A
OE1
GLU
71
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
562
C
O
HOH
1_555
67.9
A
HOH
525
C
O
HOH
1_555
A
YB
500
B
YB
YB
1_555
A
HOH
562
C
O
HOH
1_555
148.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
7
A
O
ILE
9
A
N
ASN
97
A
N
ASN
99
A
O
ILE
92
A
O
ILE
94
A
N
ALA
78
A
N
ALA
80
A
O
ARG
77
A
O
ARG
79
A
N
THR
39
A
N
THR
41
A
O
ILE
52
A
O
ILE
54
A
N
SER
61
A
N
SER
63
A
O
LEU
60
A
O
LEU
62
A
N
VAL
22
A
N
VAL
24
1
A
CB
ASP
1
A
CB
ASP
3
1
Y
1
A
CG
ASP
1
A
CG
ASP
3
1
Y
1
A
OD1
ASP
1
A
OD1
ASP
3
1
Y
1
A
OD2
ASP
1
A
OD2
ASP
3
1
Y
1
A
CD
ARG
35
A
CD
ARG
37
1
Y
1
A
NE
ARG
35
A
NE
ARG
37
1
Y
1
A
CZ
ARG
35
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
35
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
35
A
NH2
ARG
37
1
Y
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
ASP
100
A
ASP
102
1
Y
1
A
MET
101
A
MET
103
1
Y
1
A
ASN
102
A
ASN
104
1
Y
1
A
ASP
103
A
ASP
105
1
Y
1
A
ASN
104
A
ASN
106
1
Y
1
A
ARG
105
A
ARG
107
1
Y
1
A
PRO
106
A
PRO
108
1
Y
1
A
GLU
107
A
GLU
109
1
Y
1
A
PHE
108
A
PHE
110
1
Y
1
A
A
OE2
YB
GLU
YB
69
500
1.67
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
73
73
73
N
1
A
A
O
O
HOH
HOH
697
697
0.80
1_555
11_555
1
A
A
O
O
HOH
HOH
673
673
1.46
1_555
10_665
1
A
A
O
O
HOH
HOH
675
675
1.48
1_555
10_665
1
A
PRO
16
-49.09
157.54
1
A
LEU
21
-102.36
-65.26
1
A
LEU
32
-174.52
112.90
1
A
ALA
43
-121.41
-77.37
26.2
0.201
0.217
0.217
2.1
5.0
17546
92.8
1
2.0
2.1
5.0
202
969
1
0
766
0.015
2.10
1NCG
18803
0.045
1
93.4
model building
X-PLOR
refinement
X-PLOR
data reduction
DENZO
phasing
X-PLOR
STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS
1
N
N
2
N
N
3
N
N
THE ASYMMETRIC UNIT CONTAINS A SINGLE MOLECULE. A CADHERIN
STRAND DIMER IS FORMED WITH THE (Y, X, -Z) SYMMETRY MATE.
AN ADHESION DIMER IS FORMED WITH THE (1-Y, 1-X, 1/2-Z)
SYMMETRY MATE. NOTE THAT THESE TRANSFORMATIONS ARE IN THE
NON-ORTHOGONAL HEXAGONAL LATTICE.
A
GLY
27
A
GLY
29
HELX_P
A
ASN
31
A
ASN
33
5
1
5
metalc
2.298
A
GLU
11
A
OE1
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
metalc
2.013
A
GLU
11
A
OE2
GLU
13
1_555
A
YB
500
B
YB
YB
1_555
metalc
2.304
A
GLU
69
A
OE1
GLU
71
1_555
A
YB
500
B
YB
YB
1_555
metalc
2.269
A
YB
500
B
YB
YB
1_555
A
HOH
525
C
O
HOH
1_555
metalc
2.001
A
YB
500
B
YB
YB
1_555
A
HOH
562
C
O
HOH
1_555
CELL ADHESION PROTEIN
CADHERIN, CELL ADHESION PROTEIN
A
GLY
15
A
GLY
17
1
A
PRO
16
A
PRO
18
-0.57
A
PHE
17
A
PHE
19
1
A
PRO
18
A
PRO
20
0.44
A
PRO
46
A
PRO
48
1
A
PRO
47
A
PRO
49
-0.46
CADH2_MOUSE
UNP
1
1
P15116
MCRIAGGRGTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK
VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKRD
WVIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV
DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM
FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIV
ANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS
TATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLD
RESPYVQNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINIAALDYDIDPNAGPFAFD
LPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGL
GTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTVEPDA
IKPVGIRRLDERPIHAEPQYPVRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGG
DQDYDYLNDWGPRFKKLADMYGGGDD
160
267
1NCG
1
108
P15116
A
1
3
110
1
ASP
conflict
GLY
27
1NCG
A
P15116
UNP
186
29
4
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
7
A
ILE
9
A
PRO
10
A
PRO
12
A
ILE
92
A
ILE
94
A
ILE
99
A
ILE
101
A
ARG
73
A
ARG
75
A
VAL
81
A
VAL
83
A
ARG
35
A
ARG
37
A
THR
39
A
THR
41
A
PHE
51
A
PHE
53
A
ILE
53
A
ILE
55
A
GLN
59
A
GLN
61
A
VAL
62
A
VAL
64
A
GLN
19
A
GLN
21
A
ARG
23
A
ARG
25
Unknown
1
BINDING SITE FOR RESIDUE YB A 500
A
YB
500
Software
4
A
YB
500
B
YB
1
1_555
A
GLU
11
A
GLU
13
4
1_555
A
GLU
69
A
GLU
71
4
1_555
A
HOH
525
C
HOH
4
1_555
A
HOH
562
C
HOH
4
1_555
182
P 63 2 2