0.012542 0.007241 0.000000 0.000000 0.014483 0.000000 0.000000 0.000000 0.013340 0.00000 0.00000 0.00000 CIS PROLINE - PRO A 16 CIS PROLINE - PRO A 18 CIS PROLINE - PRO A 47 CIS PROLINE - PRO B 16 CIS PROLINE - PRO B 18 CIS PROLINE - PRO B 47 Shapiro, L. Fannon, A.M. Kwong, P.D. Thompson, A. Lehmann, M.S. Grubel, G. Legrand, J.-F. Als-Nielsen, J. Colman, D.R. Hendrickson, W.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 79.730 79.730 74.960 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Yb 3 173.040 YTTERBIUM (III) ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N YB N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing UK Nature NATUAS 0006 0028-0836 374 327 337 10.1038/374327a0 7885471 Structural basis of cell-cell adhesion by cadherins. 1995 10.2210/pdb1nch/pdb pdb_00001nch 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1994-08 FUJI x-ray 1 0.98 1.0 X4A NSLS 0.98 SYNCHROTRON NSLS BEAMLINE X4A 12244.817 N-CADHERIN 2 man polymer 173.040 YTTERBIUM (III) ION 2 syn non-polymer 18.015 water 231 nat water no no GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA HAVDINGNQVENPIDIVINVIDMNDNRPEF GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA HAVDINGNQVENPIDIVINVIDMNDNRPEF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli PGEX-2T PGEX-2T 1 2.81 56.16 5 WAVELENGTH MAD EXPERIMENT TAKEN NEAR URANIUM L(III) EDGE. INITIAL PHASING WAS OBTAINED FROM TWO MULTI-WAVELENGTH ANOMALOUS DIFFRACTION (MAD) EXPERIMENTS (ONE 4 WAVELENGTHS AND ONE FIVE WAVELENGTHS) PERFORMED USING RADIATION NEAR THE YTTERBIUM LIII ABSORPTION EDGE PRODUCED BY AN UNDULATOR AT THE EUROPEAN SYNCHROTRON RADIATION FACILITY. HIGH RESOLUTION REFINEMENT WAS COMPLETED STARTING FROM A MODEL PRODUCED FROM ANOTHER MAD EXPERIMENT ON THE TYPE C CRYSTAL OF THIS MOLECULE pdbx_database_status pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Derived calculations Version format compliance Advisory Database references Derived calculations Other Data collection Database references Derived calculations 1 0 1995-07-10 1 1 2008-03-03 1 2 2011-07-13 1 3 2019-11-20 1 4 2024-02-14 _pdbx_database_status.process_site _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-03-23 REL YB YTTERBIUM (III) ION HOH water THE MODEL INCLUDES TWO YTTERBIUM IONS (YB 3+) BOUND AT A PUTATIVE CALCIUM BINDING SITE FOR EACH MOLECULE OF THE ASYMMETRIC UNIT. RESIDUE NUMBERING IS FOR THE MATURE PROTEIN. YB 500 2 YB YB 500 A YB 600 2 YB YB 600 B HOH 1 3 HOH HOH 501 A HOH 8 3 HOH HOH 502 A HOH 9 3 HOH HOH 503 A HOH 10 3 HOH HOH 504 A HOH 13 3 HOH HOH 505 A HOH 15 3 HOH HOH 506 A HOH 16 3 HOH HOH 507 A HOH 18 3 HOH HOH 508 A HOH 21 3 HOH HOH 509 A HOH 23 3 HOH HOH 510 A HOH 25 3 HOH HOH 511 A HOH 26 3 HOH HOH 512 A HOH 33 3 HOH HOH 513 A HOH 34 3 HOH HOH 514 A HOH 35 3 HOH HOH 515 A HOH 36 3 HOH HOH 516 A HOH 38 3 HOH HOH 517 A HOH 40 3 HOH HOH 518 A HOH 41 3 HOH HOH 519 A HOH 43 3 HOH HOH 520 A HOH 44 3 HOH HOH 521 A HOH 52 3 HOH HOH 522 A HOH 54 3 HOH HOH 523 A HOH 55 3 HOH HOH 524 A HOH 64 3 HOH HOH 525 A HOH 65 3 HOH HOH 526 A HOH 66 3 HOH HOH 527 A HOH 68 3 HOH HOH 528 A HOH 69 3 HOH HOH 529 A HOH 70 3 HOH HOH 530 A HOH 71 3 HOH HOH 531 A HOH 72 3 HOH HOH 532 A HOH 74 3 HOH HOH 533 A HOH 75 3 HOH HOH 534 A HOH 77 3 HOH HOH 535 A HOH 78 3 HOH HOH 536 A HOH 81 3 HOH HOH 537 A HOH 85 3 HOH HOH 538 A HOH 86 3 HOH HOH 539 A HOH 87 3 HOH HOH 540 A HOH 88 3 HOH HOH 541 A HOH 91 3 HOH HOH 542 A HOH 93 3 HOH HOH 543 A HOH 98 3 HOH HOH 544 A HOH 99 3 HOH HOH 545 A HOH 100 3 HOH HOH 546 A HOH 102 3 HOH HOH 547 A HOH 103 3 HOH HOH 548 A HOH 104 3 HOH HOH 549 A HOH 105 3 HOH HOH 550 A HOH 106 3 HOH HOH 551 A HOH 107 3 HOH HOH 552 A HOH 108 3 HOH HOH 553 A HOH 109 3 HOH HOH 554 A HOH 110 3 HOH HOH 555 A HOH 111 3 HOH HOH 556 A HOH 112 3 HOH HOH 557 A HOH 114 3 HOH HOH 558 A HOH 115 3 HOH HOH 559 A HOH 116 3 HOH HOH 560 A HOH 117 3 HOH HOH 561 A HOH 118 3 HOH HOH 562 A HOH 119 3 HOH HOH 563 A HOH 131 3 HOH HOH 564 A HOH 132 3 HOH HOH 565 A HOH 133 3 HOH HOH 566 A HOH 134 3 HOH HOH 567 A HOH 135 3 HOH HOH 568 A HOH 136 3 HOH HOH 569 A HOH 137 3 HOH HOH 570 A HOH 138 3 HOH HOH 571 A HOH 139 3 HOH HOH 572 A HOH 140 3 HOH HOH 573 A HOH 141 3 HOH HOH 574 A HOH 142 3 HOH HOH 575 A HOH 147 3 HOH HOH 576 A HOH 151 3 HOH HOH 577 A HOH 152 3 HOH HOH 578 A HOH 153 3 HOH HOH 579 A HOH 154 3 HOH HOH 580 A HOH 155 3 HOH HOH 581 A HOH 156 3 HOH HOH 582 A HOH 157 3 HOH HOH 583 A HOH 158 3 HOH HOH 584 A HOH 159 3 HOH HOH 585 A HOH 160 3 HOH HOH 586 A HOH 161 3 HOH HOH 587 A HOH 162 3 HOH HOH 588 A HOH 163 3 HOH HOH 589 A HOH 164 3 HOH HOH 590 A HOH 169 3 HOH HOH 591 A HOH 170 3 HOH HOH 592 A HOH 172 3 HOH HOH 593 A HOH 174 3 HOH HOH 594 A HOH 175 3 HOH HOH 595 A HOH 176 3 HOH HOH 596 A HOH 177 3 HOH HOH 597 A HOH 178 3 HOH HOH 598 A HOH 179 3 HOH HOH 599 A HOH 180 3 HOH HOH 600 A HOH 181 3 HOH HOH 601 A HOH 182 3 HOH HOH 602 A HOH 183 3 HOH HOH 603 A HOH 184 3 HOH HOH 604 A HOH 185 3 HOH HOH 605 A HOH 186 3 HOH HOH 606 A HOH 197 3 HOH HOH 607 A HOH 198 3 HOH HOH 608 A HOH 203 3 HOH HOH 609 A HOH 204 3 HOH HOH 610 A HOH 205 3 HOH HOH 611 A HOH 206 3 HOH HOH 612 A HOH 207 3 HOH HOH 613 A HOH 208 3 HOH HOH 614 A HOH 209 3 HOH HOH 615 A HOH 210 3 HOH HOH 616 A HOH 211 3 HOH HOH 617 A HOH 212 3 HOH HOH 618 A HOH 213 3 HOH HOH 619 A HOH 214 3 HOH HOH 620 A HOH 215 3 HOH HOH 621 A HOH 216 3 HOH HOH 622 A HOH 217 3 HOH HOH 623 A HOH 218 3 HOH HOH 624 A HOH 219 3 HOH HOH 625 A HOH 220 3 HOH HOH 626 A HOH 221 3 HOH HOH 627 A HOH 222 3 HOH HOH 628 A HOH 2 3 HOH HOH 601 B HOH 3 3 HOH HOH 602 B HOH 4 3 HOH HOH 603 B HOH 5 3 HOH HOH 604 B HOH 6 3 HOH HOH 605 B HOH 7 3 HOH HOH 606 B HOH 11 3 HOH HOH 607 B HOH 12 3 HOH HOH 608 B HOH 14 3 HOH HOH 609 B HOH 17 3 HOH HOH 610 B HOH 19 3 HOH HOH 611 B HOH 20 3 HOH HOH 612 B HOH 22 3 HOH HOH 613 B HOH 24 3 HOH HOH 614 B HOH 27 3 HOH HOH 615 B HOH 28 3 HOH HOH 616 B HOH 29 3 HOH HOH 617 B HOH 30 3 HOH HOH 618 B HOH 31 3 HOH HOH 619 B HOH 32 3 HOH HOH 620 B HOH 37 3 HOH HOH 621 B HOH 39 3 HOH HOH 622 B HOH 42 3 HOH HOH 623 B HOH 45 3 HOH HOH 624 B HOH 46 3 HOH HOH 625 B HOH 47 3 HOH HOH 626 B HOH 48 3 HOH HOH 627 B HOH 49 3 HOH HOH 628 B HOH 50 3 HOH HOH 629 B HOH 51 3 HOH HOH 630 B HOH 53 3 HOH HOH 631 B HOH 56 3 HOH HOH 632 B HOH 57 3 HOH HOH 633 B HOH 58 3 HOH HOH 634 B HOH 59 3 HOH HOH 635 B HOH 60 3 HOH HOH 636 B HOH 61 3 HOH HOH 637 B HOH 62 3 HOH HOH 638 B HOH 63 3 HOH HOH 639 B HOH 67 3 HOH HOH 640 B HOH 73 3 HOH HOH 641 B HOH 76 3 HOH HOH 642 B HOH 79 3 HOH HOH 643 B HOH 80 3 HOH HOH 644 B HOH 82 3 HOH HOH 645 B HOH 83 3 HOH HOH 646 B HOH 84 3 HOH HOH 647 B HOH 89 3 HOH HOH 648 B HOH 90 3 HOH HOH 649 B HOH 92 3 HOH HOH 650 B HOH 94 3 HOH HOH 651 B HOH 95 3 HOH HOH 652 B HOH 96 3 HOH HOH 653 B HOH 97 3 HOH HOH 654 B HOH 101 3 HOH HOH 655 B HOH 113 3 HOH HOH 656 B HOH 120 3 HOH HOH 657 B HOH 121 3 HOH HOH 658 B HOH 122 3 HOH HOH 659 B HOH 123 3 HOH HOH 660 B HOH 124 3 HOH HOH 661 B HOH 125 3 HOH HOH 662 B HOH 126 3 HOH HOH 663 B HOH 127 3 HOH HOH 664 B HOH 128 3 HOH HOH 665 B HOH 129 3 HOH HOH 666 B HOH 130 3 HOH HOH 667 B HOH 143 3 HOH HOH 668 B HOH 144 3 HOH HOH 669 B HOH 145 3 HOH HOH 670 B HOH 146 3 HOH HOH 671 B HOH 148 3 HOH HOH 672 B HOH 149 3 HOH HOH 673 B HOH 150 3 HOH HOH 674 B HOH 165 3 HOH HOH 675 B HOH 166 3 HOH HOH 676 B HOH 167 3 HOH HOH 677 B HOH 168 3 HOH HOH 678 B HOH 171 3 HOH HOH 679 B HOH 173 3 HOH HOH 680 B HOH 187 3 HOH HOH 681 B HOH 188 3 HOH HOH 682 B HOH 189 3 HOH HOH 683 B HOH 190 3 HOH HOH 684 B HOH 191 3 HOH HOH 685 B HOH 192 3 HOH HOH 686 B HOH 193 3 HOH HOH 687 B HOH 194 3 HOH HOH 688 B HOH 195 3 HOH HOH 689 B HOH 196 3 HOH HOH 690 B HOH 199 3 HOH HOH 691 B HOH 200 3 HOH HOH 692 B HOH 201 3 HOH HOH 693 B HOH 202 3 HOH HOH 694 B HOH 223 3 HOH HOH 695 B HOH 224 3 HOH HOH 696 B HOH 225 3 HOH HOH 697 B HOH 226 3 HOH HOH 698 B HOH 227 3 HOH HOH 699 B HOH 228 3 HOH HOH 700 B HOH 229 3 HOH HOH 701 B HOH 230 3 HOH HOH 702 B HOH 231 3 HOH HOH 703 B GLY -2 n 1 GLY -2 A SER -1 n 2 SER -1 A ASP 1 n 3 ASP 1 A TRP 2 n 4 TRP 2 A VAL 3 n 5 VAL 3 A ILE 4 n 6 ILE 4 A PRO 5 n 7 PRO 5 A PRO 6 n 8 PRO 6 A ILE 7 n 9 ILE 7 A ASN 8 n 10 ASN 8 A LEU 9 n 11 LEU 9 A PRO 10 n 12 PRO 10 A GLU 11 n 13 GLU 11 A ASN 12 n 14 ASN 12 A SER 13 n 15 SER 13 A n 16 14 A GLY 15 n 17 GLY 15 A PRO 16 n 18 PRO 16 A PHE 17 n 19 PHE 17 A PRO 18 n 20 PRO 18 A GLN 19 n 21 GLN 19 A GLU 20 n 22 GLU 20 A LEU 21 n 23 LEU 21 A VAL 22 n 24 VAL 22 A ARG 23 n 25 ARG 23 A ILE 24 n 26 ILE 24 A ARG 25 n 27 ARG 25 A SER 26 n 28 SER 26 A GLY 27 n 29 GLY 27 A ARG 28 n 30 ARG 28 A ASP 29 n 31 ASP 29 A n 32 30 A n 33 31 A LEU 32 n 34 LEU 32 A SER 33 n 35 SER 33 A LEU 34 n 36 LEU 34 A ARG 35 n 37 ARG 35 A TYR 36 n 38 TYR 36 A SER 37 n 39 SER 37 A VAL 38 n 40 VAL 38 A THR 39 n 41 THR 39 A GLY 40 n 42 GLY 40 A PRO 41 n 43 PRO 41 A GLY 42 n 44 GLY 42 A ALA 43 n 45 ALA 43 A ASP 44 n 46 ASP 44 A GLN 45 n 47 GLN 45 A PRO 46 n 48 PRO 46 A PRO 47 n 49 PRO 47 A THR 48 n 50 THR 48 A GLY 49 n 51 GLY 49 A ILE 50 n 52 ILE 50 A PHE 51 n 53 PHE 51 A ILE 52 n 54 ILE 52 A ILE 53 n 55 ILE 53 A ASN 54 n 56 ASN 54 A PRO 55 n 57 PRO 55 A ILE 56 n 58 ILE 56 A SER 57 n 59 SER 57 A GLY 58 n 60 GLY 58 A GLN 59 n 61 GLN 59 A LEU 60 n 62 LEU 60 A SER 61 n 63 SER 61 A VAL 62 n 64 VAL 62 A THR 63 n 65 THR 63 A LYS 64 n 66 LYS 64 A PRO 65 n 67 PRO 65 A LEU 66 n 68 LEU 66 A ASP 67 n 69 ASP 67 A ARG 68 n 70 ARG 68 A GLU 69 n 71 GLU 69 A LEU 70 n 72 LEU 70 A ILE 71 n 73 ILE 71 A ALA 72 n 74 ALA 72 A ARG 73 n 75 ARG 73 A PHE 74 n 76 PHE 74 A HIS 75 n 77 HIS 75 A LEU 76 n 78 LEU 76 A ARG 77 n 79 ARG 77 A ALA 78 n 80 ALA 78 A HIS 79 n 81 HIS 79 A ALA 80 n 82 ALA 80 A VAL 81 n 83 VAL 81 A ASP 82 n 84 ASP 82 A ILE 83 n 85 ILE 83 A ASN 84 n 86 ASN 84 A GLY 85 n 87 GLY 85 A ASN 86 n 88 ASN 86 A GLN 87 n 89 GLN 87 A VAL 88 n 90 VAL 88 A GLU 89 n 91 GLU 89 A ASN 90 n 92 ASN 90 A PRO 91 n 93 PRO 91 A ILE 92 n 94 ILE 92 A ASP 93 n 95 ASP 93 A ILE 94 n 96 ILE 94 A VAL 95 n 97 VAL 95 A ILE 96 n 98 ILE 96 A ASN 97 n 99 ASN 97 A VAL 98 n 100 VAL 98 A ILE 99 n 101 ILE 99 A n 102 100 A n 103 101 A n 104 102 A n 105 103 A n 106 104 A n 107 105 A n 108 106 A n 109 107 A n 110 108 A n 1 -1 B n 2 0 B ASP 1 n 3 ASP 1 B TRP 2 n 4 TRP 2 B VAL 3 n 5 VAL 3 B ILE 4 n 6 ILE 4 B PRO 5 n 7 PRO 5 B PRO 6 n 8 PRO 6 B ILE 7 n 9 ILE 7 B ASN 8 n 10 ASN 8 B LEU 9 n 11 LEU 9 B PRO 10 n 12 PRO 10 B GLU 11 n 13 GLU 11 B ASN 12 n 14 ASN 12 B SER 13 n 15 SER 13 B ARG 14 n 16 ARG 14 B GLY 15 n 17 GLY 15 B PRO 16 n 18 PRO 16 B PHE 17 n 19 PHE 17 B PRO 18 n 20 PRO 18 B GLN 19 n 21 GLN 19 B GLU 20 n 22 GLU 20 B LEU 21 n 23 LEU 21 B VAL 22 n 24 VAL 22 B ARG 23 n 25 ARG 23 B ILE 24 n 26 ILE 24 B ARG 25 n 27 ARG 25 B SER 26 n 28 SER 26 B GLY 27 n 29 GLY 27 B ARG 28 n 30 ARG 28 B ASP 29 n 31 ASP 29 B LYS 30 n 32 LYS 30 B ASN 31 n 33 ASN 31 B LEU 32 n 34 LEU 32 B SER 33 n 35 SER 33 B LEU 34 n 36 LEU 34 B ARG 35 n 37 ARG 35 B TYR 36 n 38 TYR 36 B SER 37 n 39 SER 37 B VAL 38 n 40 VAL 38 B THR 39 n 41 THR 39 B GLY 40 n 42 GLY 40 B PRO 41 n 43 PRO 41 B GLY 42 n 44 GLY 42 B ALA 43 n 45 ALA 43 B ASP 44 n 46 ASP 44 B GLN 45 n 47 GLN 45 B PRO 46 n 48 PRO 46 B PRO 47 n 49 PRO 47 B THR 48 n 50 THR 48 B GLY 49 n 51 GLY 49 B ILE 50 n 52 ILE 50 B PHE 51 n 53 PHE 51 B ILE 52 n 54 ILE 52 B ILE 53 n 55 ILE 53 B ASN 54 n 56 ASN 54 B PRO 55 n 57 PRO 55 B ILE 56 n 58 ILE 56 B SER 57 n 59 SER 57 B GLY 58 n 60 GLY 58 B GLN 59 n 61 GLN 59 B LEU 60 n 62 LEU 60 B SER 61 n 63 SER 61 B VAL 62 n 64 VAL 62 B THR 63 n 65 THR 63 B LYS 64 n 66 LYS 64 B PRO 65 n 67 PRO 65 B LEU 66 n 68 LEU 66 B ASP 67 n 69 ASP 67 B ARG 68 n 70 ARG 68 B GLU 69 n 71 GLU 69 B LEU 70 n 72 LEU 70 B ILE 71 n 73 ILE 71 B ALA 72 n 74 ALA 72 B ARG 73 n 75 ARG 73 B PHE 74 n 76 PHE 74 B HIS 75 n 77 HIS 75 B LEU 76 n 78 LEU 76 B ARG 77 n 79 ARG 77 B ALA 78 n 80 ALA 78 B HIS 79 n 81 HIS 79 B ALA 80 n 82 ALA 80 B VAL 81 n 83 VAL 81 B ASP 82 n 84 ASP 82 B ILE 83 n 85 ILE 83 B ASN 84 n 86 ASN 84 B GLY 85 n 87 GLY 85 B ASN 86 n 88 ASN 86 B GLN 87 n 89 GLN 87 B VAL 88 n 90 VAL 88 B GLU 89 n 91 GLU 89 B ASN 90 n 92 ASN 90 B PRO 91 n 93 PRO 91 B ILE 92 n 94 ILE 92 B ASP 93 n 95 ASP 93 B ILE 94 n 96 ILE 94 B VAL 95 n 97 VAL 95 B ILE 96 n 98 ILE 96 B ASN 97 n 99 ASN 97 B VAL 98 n 100 VAL 98 B ILE 99 n 101 ILE 99 B ASP 100 n 102 ASP 100 B n 103 101 B n 104 102 B n 105 103 B n 106 104 B n 107 105 B n 108 106 B n 109 107 B n 110 108 B author_defined_assembly 2 dimeric software_defined_assembly PISA,PQS 2 dimeric software_defined_assembly PQS 2 dimeric 2430 -25 10570 A GLU 11 A OE1 GLU 13 1_555 A YB 500 C YB YB 1_555 A ASP 67 A OD1 ASP 69 1_555 69.2 A GLU 11 A OE1 GLU 13 1_555 A YB 500 C YB YB 1_555 A GLU 69 A OE1 GLU 71 1_555 70.5 A ASP 67 A OD1 ASP 69 1_555 A YB 500 C YB YB 1_555 A GLU 69 A OE1 GLU 71 1_555 54.9 B GLU 11 B OE1 GLU 13 1_555 B YB 600 D YB YB 1_555 B ASP 100 B OD1 ASP 102 1_555 88.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 74.9600000000 A O ILE 7 A O ILE 9 A N ASN 97 A N ASN 99 A O ILE 92 A O ILE 94 A N ALA 78 A N ALA 80 A O ARG 77 A O ARG 79 A N THR 39 A N THR 41 A O ILE 52 A O ILE 54 A N SER 61 A N SER 63 A O LEU 60 A O LEU 62 A N VAL 22 A N VAL 24 B O ILE 7 B O ILE 9 B N ASN 97 B N ASN 99 B O ILE 92 B O ILE 94 B N ALA 78 B N ALA 80 B O ARG 77 B O ARG 79 B N THR 39 B N THR 41 B O ILE 52 B O ILE 54 B N SER 61 B N SER 63 B O LEU 60 B O LEU 62 B N VAL 22 B N VAL 24 1 B CG ARG 14 B CG ARG 16 1 Y 1 B CD ARG 14 B CD ARG 16 1 Y 1 B NE ARG 14 B NE ARG 16 1 Y 1 B CZ ARG 14 B CZ ARG 16 1 Y 1 B NH1 ARG 14 B NH1 ARG 16 1 Y 1 B NH2 ARG 14 B NH2 ARG 16 1 Y 1 B CG ARG 35 B CG ARG 37 1 Y 1 B CD ARG 35 B CD ARG 37 1 Y 1 B NE ARG 35 B NE ARG 37 1 Y 1 B CZ ARG 35 B CZ ARG 37 1 Y 1 B NH1 ARG 35 B NH1 ARG 37 1 Y 1 B NH2 ARG 35 B NH2 ARG 37 1 Y 1 A ARG 14 A ARG 16 1 Y 1 A LYS 30 A LYS 32 1 Y 1 A ASN 31 A ASN 33 1 Y 1 A ASP 100 A ASP 102 1 Y 1 A MET 101 A MET 103 1 Y 1 A ASN 102 A ASN 104 1 Y 1 A ASP 103 A ASP 105 1 Y 1 A ASN 104 A ASN 106 1 Y 1 A ARG 105 A ARG 107 1 Y 1 A PRO 106 A PRO 108 1 Y 1 A GLU 107 A GLU 109 1 Y 1 A PHE 108 A PHE 110 1 Y 1 B GLY -1 B GLY 1 1 Y 1 B SER 0 B SER 2 1 Y 1 B MET 101 B MET 103 1 Y 1 B ASN 102 B ASN 104 1 Y 1 B ASP 103 B ASP 105 1 Y 1 B ASN 104 B ASN 106 1 Y 1 B ARG 105 B ARG 107 1 Y 1 B PRO 106 B PRO 108 1 Y 1 B GLU 107 B GLU 109 1 Y 1 B PHE 108 B PHE 110 1 Y 1 B B YB O YB HOH 600 676 1.70 1 A A OE2 YB GLU YB 69 500 1.75 1 A A OE2 YB GLU YB 11 500 1.77 1 B B OE2 YB GLU YB 11 600 1.77 1 B B OE2 YB GLU YB 69 600 1.80 1 B B OE1 YB GLU YB 69 600 1.93 1 B B CD YB GLU YB 69 600 2.19 1 15.29 2.30 115.30 130.59 A A A CA CB CG LEU LEU LEU 9 9 9 N 1 -7.63 1.20 123.30 115.67 A A A OE1 CD OE2 GLU GLU GLU 69 69 69 N 1 13.91 2.00 111.60 125.51 B B B CB CA C ILE ILE ILE 7 7 7 N 1 -17.86 2.30 110.80 92.94 B B B N CA CB ILE ILE ILE 7 7 7 N 1 -32.37 2.20 111.40 79.03 B B B CG1 CB CG2 ILE ILE ILE 7 7 7 N 1 32.24 1.90 111.00 143.24 B B B CA CB CG1 ILE ILE ILE 7 7 7 N 1 -8.14 1.20 123.30 115.16 B B B OE1 CD OE2 GLU GLU GLU 69 69 69 N 1 B B N CA ILE ILE 7 7 0.528 0.020 1.459 1.987 N 1 B B CB CG1 ILE ILE 7 7 0.214 0.028 1.536 1.750 N 1 B B CA C ILE ILE 7 7 -0.756 0.026 1.525 0.769 N 1 B B C O ILE ILE 7 7 0.174 0.019 1.229 1.403 N 1 A A O O HOH HOH 564 564 1.89 1_555 4_555 1 A SER -1 -176.53 45.54 1 A ASP 1 140.49 11.81 1 A LEU 21 -99.68 -72.96 1 A ALA 43 -119.35 -93.10 1 B LEU 21 -103.42 -65.92 1 B ALA 43 -109.72 -83.50 32.6 0.309 0.224 0.224 2.1 5.0 13950 92.0 1 2.0 2.1 5.0 231 1761 2 0 1528 0.012 2.13 1NCH 15198 0.047 1 93.2 model building X-PLOR refinement X-PLOR data reduction DENZO phasing X-PLOR STRUCTURAL BASIS OF CELL-CELL ADHESION BY CADHERINS 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N THE ASYMMETRIC UNIT (MOLECULES A AND B) COMPRISE A CADHERIN ADHESION DIMER. A STRAND DIMER IS FORMED, FOR EXAMPLE, BETWEEN MOLECULE A AND ITS (Y, X, -Z) SYMMETRY MATE. NOTE THAT THIS TRANSFORMATION IS IN THE NON-ORTHOGONAL TRIGONAL LATTICE. B GLY 27 B GLY 29 HELX_P B LYS 30 B LYS 32 5 1 4 metalc 2.530 A GLU 11 A OE1 GLU 13 1_555 A YB 500 C YB YB 1_555 metalc 3.290 A ASP 67 A OD1 ASP 69 1_555 A YB 500 C YB YB 1_555 metalc 2.099 A GLU 69 A OE1 GLU 71 1_555 A YB 500 C YB YB 1_555 metalc 2.511 B GLU 11 B OE1 GLU 13 1_555 B YB 600 D YB YB 1_555 metalc 3.376 B ASP 100 B OD1 ASP 102 1_555 B YB 600 D YB YB 1_555 CELL ADHESION PROTEIN CADHERIN, CELL ADHESION PROTEIN A GLY 15 A GLY 17 1 A PRO 16 A PRO 18 0.15 A PHE 17 A PHE 19 1 A PRO 18 A PRO 20 0.12 A PRO 46 A PRO 48 1 A PRO 47 A PRO 49 -0.08 B GLY 15 B GLY 17 1 B PRO 16 B PRO 18 0.04 B PHE 17 B PHE 19 1 B PRO 18 B PRO 20 -0.35 B PRO 46 B PRO 48 1 B PRO 47 B PRO 49 -0.31 CADH2_MOUSE UNP 1 1 P15116 MCRIAGGRGTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKRD WVIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIV ANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS TATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLD RESPYVQNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINIAALDYDIDPNAGPFAFD LPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGL GTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTVEPDA IKPVGIRRLDERPIHAEPQYPVRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGG DQDYDYLNDWGPRFKKLADMYGGGDD 160 267 1NCH 1 108 P15116 A 1 3 110 160 267 1NCH 1 108 P15116 B 1 3 110 1 ASP cloning artifact GLY 27 1NCH A P15116 UNP 186 29 2 ASP cloning artifact GLY 27 1NCH B P15116 UNP 186 29 4 3 4 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 7 A ILE 9 A PRO 10 A PRO 12 A ILE 92 A ILE 94 A ILE 99 A ILE 101 A ARG 73 A ARG 75 A ASP 82 A ASP 84 A LEU 34 A LEU 36 A THR 39 A THR 41 A PHE 51 A PHE 53 A ILE 53 A ILE 55 A GLN 59 A GLN 61 A VAL 62 A VAL 64 A GLN 19 A GLN 21 A ARG 23 A ARG 25 B ILE 7 B ILE 9 B PRO 10 B PRO 12 B ILE 92 B ILE 94 B ILE 99 B ILE 101 B ARG 73 B ARG 75 B ASP 82 B ASP 84 B LEU 34 B LEU 36 B THR 39 B THR 41 B PHE 51 B PHE 53 B ILE 53 B ILE 55 B GLN 59 B GLN 61 B VAL 62 B VAL 64 B GLN 19 B GLN 21 B ARG 23 B ARG 25 Unknown 1 BINDING SITE FOR RESIDUE YB A 500 A YB 500 Software 3 BINDING SITE FOR RESIDUE YB B 600 B YB 600 Software 4 A YB 500 C YB 1 1_555 A GLU 11 A GLU 13 3 1_555 A ASP 67 A ASP 69 3 1_555 A GLU 69 A GLU 71 3 1_555 B GLU 11 B GLU 13 4 1_555 B GLU 69 B GLU 71 4 1_555 B ASP 100 B ASP 102 4 1_555 B HOH 676 F HOH 4 1_555 150 P 3 2 1