1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Clore, G.M.
Omichinski, J.G.
Gronenborn, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
NE
FEBS Lett.
FEBLAL
0165
0014-5793
292
25
30
10.1016/0014-5793(91)80825-N
1959614
Structural characterization of a 39-residue synthetic peptide containing the two zinc binding domains from the HIV-1 p7 nucleocapsid protein by CD and NMR spectroscopy.
1991
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1928.247
HIV-1 P7 NUCLEOCAPSID PROTEIN
1
man
polymer
2073.419
HIV-1 P7 NUCLEOCAPSID PROTEIN
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
no
no
VKCFNCGKEGHTARNCR
VKCFNCGKEGHTARNCR
N
polypeptide(L)
no
no
KGCWKCGKEGHQMKDCTE
KGCWKCGKEGHQMKDCTE
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
sample
11676
Human immunodeficiency virus 1
Lentivirus
sample
11676
Human immunodeficiency virus 1
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
pdbx_validate_close_contact
struct_conn
struct_conn_type
repository
Initial release
Version format compliance
Version format compliance
Advisory
Data collection
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-07-04
_pdbx_database_status.process_site
Y
BNL
1991-11-27
REL
ZN
ZINC ION
1
THIS ENTRY CONTAINS SOLUTION NMR STRUCTURE OF A 39 RESIDUE
SYNTHETIC PEPTIDE CONTAINING THE TWO ZINC BINDING DOMAINS
FROM THE HIV-1 P7 NUCLEOCAPSID PROTEIN. THE TWO DOMAINS
ARE COMPLETELY INDEPENDENT AND WERE SOLVED SEPARATELY. THE
FIRST DOMAIN (CHAIN *N*, RESIDUES 1 - 17) WAS BASED ON 147
APPROXIMATE INTERPROTON DISTANCE RESTRAINTS. THE SECOND
DOMAIN (CHAIN *C*, RESIDUES 22 - 39) WAS BASED ON 148
APPROXIMATE INTERPROTON DISTANCE RESTRAINTS. THE LINKER
REGION IS HIGHLY FLEXIBLE AND CANNOT BE DEFINED FROM THE
NMR DATA.
THE METHOD USED TO DETERMINE THE STRUCTURES IS THE HYBRID
METRIC MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED
ANNEALING METHOD (NILGES, CLORE, AND GRONENBORN, FEBS
LETT. 229, 317 (1988)).
A TOTAL OF 15 SIMULATED ANNEALING STRUCTURES WAS CALCULATED
FOR EACH DOMAIN. THE COORDINATES OF THE DOMAINS WERE THEN
AVERAGED AND SUBJECTED TO RESTRAINED REGULARIZATION TO
YIELD THE RESTRAINED MINIMIZED STRUCTURES. ONLY THESE
COORDINATES ARE LISTED. THE FIRST CHAIN IS THE N-TERMINAL
DOMAIN, AND THE SECOND IS THE C-TERMINAL DOMAIN.
THE FIELD PRESENTED IN COLUMNS 61 - 66 IN THIS COORDINATE
FILE REPRESENTS THE ATOMIC RMS DEVIATION OF THE INDIVIDUAL
STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS FOR EACH
DOMAIN.
THE COORDINATES OF THE TWO DOMAINS HAVE BEEN BEST FITTED TO
EACH OTHER.
ZN
60
3
ZN
ZN
60
N
ZN
61
3
ZN
ZN
61
C
VAL
1
n
1
VAL
1
N
LYS
2
n
2
LYS
2
N
CYS
3
n
3
CYS
3
N
PHE
4
n
4
PHE
4
N
ASN
5
n
5
ASN
5
N
CYS
6
n
6
CYS
6
N
GLY
7
n
7
GLY
7
N
LYS
8
n
8
LYS
8
N
GLU
9
n
9
GLU
9
N
GLY
10
n
10
GLY
10
N
HIS
11
n
11
HIS
11
N
THR
12
n
12
THR
12
N
ALA
13
n
13
ALA
13
N
ARG
14
n
14
ARG
14
N
ASN
15
n
15
ASN
15
N
CYS
16
n
16
CYS
16
N
ARG
17
n
17
ARG
17
N
LYS
22
n
1
LYS
22
C
GLY
23
n
2
GLY
23
C
CYS
24
n
3
CYS
24
C
TRP
25
n
4
TRP
25
C
LYS
26
n
5
LYS
26
C
CYS
27
n
6
CYS
27
C
GLY
28
n
7
GLY
28
C
LYS
29
n
8
LYS
29
C
GLU
30
n
9
GLU
30
C
GLY
31
n
10
GLY
31
C
HIS
32
n
11
HIS
32
C
GLN
33
n
12
GLN
33
C
MET
34
n
13
MET
34
C
LYS
35
n
14
LYS
35
C
ASP
36
n
15
ASP
36
C
CYS
37
n
16
CYS
37
C
THR
38
n
17
THR
38
C
GLU
39
n
18
GLU
39
C
author_defined_assembly
2
dimeric
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
27
B
SG
CYS
6
1_555
107.5
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
C
HIS
32
B
NE2
HIS
11
1_555
110.4
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
C
HIS
32
B
NE2
HIS
11
1_555
109.3
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
117.9
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
105.7
C
HIS
32
B
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
7.5
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
116.3
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
8.8
C
HIS
32
B
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
105.3
N
HIS
11
A
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
100.8
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
112.8
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
109.0
C
HIS
32
B
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
107.8
N
HIS
11
A
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
103.5
N
CYS
6
A
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
103.7
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
115.6
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
106.4
C
HIS
32
B
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
107.4
N
HIS
11
A
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
102.8
N
CYS
6
A
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
100.9
C
CYS
24
B
SG
CYS
3
1_555
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
3.1
N
CYS
16
A
SG
CYS
16
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
3.2
C
CYS
27
B
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
110.3
C
HIS
32
B
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
110.3
N
HIS
11
A
NE2
HIS
11
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
117.8
N
CYS
6
A
SG
CYS
6
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
119.1
C
CYS
24
B
SG
CYS
3
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
110.1
N
CYS
3
A
SG
CYS
3
1_555
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
112.9
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
C
HIS
32
B
NE2
HIS
11
1_555
115.9
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
113.3
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
8.1
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
9.7
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
113.2
N
HIS
11
A
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
109.3
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
116.9
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
114.2
N
HIS
11
A
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
110.8
N
CYS
6
A
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
112.4
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
114.4
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
114.4
N
HIS
11
A
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
110.5
N
CYS
6
A
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
109.4
C
CYS
24
B
SG
CYS
3
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
3.7
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
103.0
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
100.6
N
HIS
11
A
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
108.7
N
CYS
6
A
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
112.7
C
CYS
24
B
SG
CYS
3
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
102.8
N
CYS
3
A
SG
CYS
3
1_555
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
106.2
C
CYS
27
B
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
100.6
C
HIS
32
B
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
100.6
N
HIS
11
A
NE2
HIS
11
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
108.7
N
CYS
6
A
SG
CYS
6
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
110.3
C
CYS
24
B
SG
CYS
3
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
105.2
N
CYS
3
A
SG
CYS
3
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
108.6
C
CYS
37
B
SG
CYS
16
1_555
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
2.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
N
O
LYS
2
A
O
LYS
2
C
N
CYS
24
B
N
CYS
3
1
N
C
HD2
HD3
LYS
LYS
8
29
0.10
1
N
C
CA
CA
CYS
CYS
6
27
0.11
1
N
C
ND1
ND1
HIS
HIS
11
32
0.14
1
N
C
N
N
ASN
ASP
15
36
0.14
1
N
C
C
C
GLY
GLY
7
28
0.15
1
N
C
CE1
CE1
HIS
HIS
11
32
0.16
1
N
C
C
C
CYS
CYS
6
27
0.16
1
N
C
SG
SG
CYS
CYS
3
24
0.18
1
N
C
C
C
ARG
LYS
14
35
0.19
1
N
C
HG2
HG3
LYS
LYS
8
29
0.20
1
N
C
N
N
GLY
GLY
7
28
0.20
1
N
C
HA
HA
CYS
CYS
6
27
0.21
1
N
C
N
N
THR
GLN
12
33
0.23
1
N
C
HG2
HA
ARG
THR
17
38
0.23
1
N
C
CA
CA
THR
GLN
12
33
0.23
1
N
C
CA
CA
ALA
MET
13
34
0.25
1
N
C
HB3
HB3
HIS
HIS
11
32
0.27
1
N
C
H
H
ASN
ASP
15
36
0.27
1
N
C
N
N
CYS
CYS
6
27
0.28
1
N
C
HB3
CG
GLU
GLU
9
30
0.28
1
N
C
CB
CB
ALA
MET
13
34
0.28
1
N
C
N
N
ARG
LYS
14
35
0.28
1
N
C
NE2
NE2
HIS
HIS
11
32
0.29
1
N
C
C
C
ALA
MET
13
34
0.29
1
N
C
N
N
HIS
HIS
11
32
0.29
1
N
C
CB
CB
CYS
CYS
6
27
0.29
1
N
C
H
H
CYS
CYS
6
27
0.29
1
N
C
CG
CG
HIS
HIS
11
32
0.30
1
N
C
CB
CB
HIS
HIS
11
32
0.30
1
N
C
CB
CB
THR
GLN
12
33
0.30
1
N
C
CB
CB
CYS
CYS
16
37
0.31
1
N
C
HB2
HB2
CYS
CYS
3
24
0.31
1
N
C
CA
CA
GLY
GLY
7
28
0.31
1
N
C
CA
CA
HIS
HIS
11
32
0.31
1
N
C
ZN
ZN
ZN
ZN
60
61
0.32
1
N
C
HB2
HB2
HIS
HIS
11
32
0.32
1
N
C
C
C
HIS
HIS
11
32
0.32
1
N
C
CB
CB
CYS
CYS
3
24
0.32
1
N
C
HA
HA
ALA
MET
13
34
0.33
1
N
C
HA
HA
HIS
HIS
11
32
0.33
1
N
C
CB
CB
LYS
LYS
8
29
0.34
1
N
C
SG
SG
CYS
CYS
16
37
0.34
1
N
C
H
H
ARG
LYS
14
35
0.34
1
N
C
HA
HA
LYS
LYS
8
29
0.34
1
N
C
HD1
HD1
HIS
HIS
11
32
0.35
1
N
C
CA
CA
LYS
LYS
8
29
0.35
1
N
C
O
O
ARG
LYS
14
35
0.37
1
N
C
CZ
HE3
ARG
LYS
14
35
0.37
1
N
C
HB
HB3
THR
GLN
12
33
0.37
1
N
C
HB2
HB2
CYS
CYS
6
27
0.37
1
N
C
C
C
LYS
LYS
8
29
0.38
1
N
C
HA
HA
CYS
CYS
3
24
0.39
1
N
C
SG
SG
CYS
CYS
6
27
0.39
1
N
C
HD2
O
ARG
THR
17
38
0.41
1
N
C
HE1
HE1
HIS
HIS
11
32
0.41
1
N
C
HB3
HB3
CYS
CYS
6
27
0.41
1
N
C
HB2
HB2
CYS
CYS
16
37
0.41
1
N
C
CA
CA
ARG
LYS
14
35
0.42
1
N
C
O
O
ASN
LYS
5
26
0.42
1
N
C
CA
CA
ASN
ASP
15
36
0.43
1
N
C
HA
HA
THR
GLN
12
33
0.43
1
N
C
H
H
CYS
CYS
16
37
0.43
1
N
C
CD
HD2
ARG
LYS
14
35
0.44
1
N
C
C
C
ASN
LYS
5
26
0.44
1
N
C
N
N
CYS
CYS
16
37
0.44
1
N
C
N
N
ALA
MET
13
34
0.44
1
N
C
CA
CA
CYS
CYS
3
24
0.44
1
N
C
H
H
GLY
GLY
7
28
0.45
1
N
C
CG2
HG2
THR
GLN
12
33
0.46
1
N
C
CG
HB2
ASN
ASP
15
36
0.47
1
N
C
N
N
GLU
GLU
9
30
0.47
1
N
C
HZ1
HZ2
LYS
LYS
8
29
0.47
1
N
C
HB3
HB3
CYS
CYS
3
24
0.49
1
N
C
HA
HA
ASN
ASP
15
36
0.50
1
N
C
C
C
CYS
CYS
3
24
0.51
1
N
C
O
O
ALA
MET
13
34
0.51
1
N
C
CG
HB3
GLU
GLU
9
30
0.52
1
N
C
H
N
GLY
GLY
10
31
0.52
1
N
C
H
H
HIS
HIS
11
32
0.52
1
N
C
CD2
CD2
HIS
HIS
11
32
0.54
1
N
C
HH21
OG1
ARG
THR
17
38
0.54
1
N
C
HA3
HA3
GLY
GLY
10
31
0.54
1
N
C
O
O
CYS
CYS
6
27
0.55
1
N
C
NH2
OG1
ARG
THR
17
38
0.55
1
N
C
CA
CA
CYS
CYS
16
37
0.56
1
N
C
C
C
ASN
ASP
15
36
0.56
1
N
C
HG2
CG
ARG
LYS
14
35
0.56
1
N
C
C
C
GLY
GLY
10
31
0.56
1
N
C
H
H
THR
GLN
12
33
0.57
1
N
C
CA
CA
GLY
GLY
10
31
0.57
1
N
C
OE1
OE1
GLU
GLU
9
30
0.58
1
N
C
C
C
THR
GLN
12
33
0.58
1
N
C
N
N
GLY
GLY
10
31
0.59
1
N
C
HE2
HE3
LYS
LYS
8
29
0.60
1
N
C
HA
HA
ARG
LYS
14
35
0.61
1
N
C
C
C
GLU
GLU
9
30
0.62
1
N
C
HA3
HA3
GLY
GLY
7
28
0.62
1
N
C
C
O
GLU
GLU
9
30
0.62
1
N
C
CB
H
LYS
GLY
2
23
0.62
1
N
C
HA
CA
PHE
TRP
4
25
0.63
1
N
C
CB
HB2
ARG
LYS
14
35
0.63
1
N
C
H
H
GLU
GLU
9
30
0.63
1
N
C
NZ
NZ
LYS
LYS
8
29
0.63
1
N
C
HA2
HA2
GLY
GLY
7
28
0.63
1
N
C
H
H
GLY
GLY
10
31
0.63
1
N
C
HA2
HA2
GLY
GLY
10
31
0.64
1
N
C
O
O
GLU
GLU
9
30
0.64
1
N
C
N
N
LYS
LYS
8
29
0.64
1
N
C
HA
CA
GLU
GLU
9
30
0.64
1
N
C
H
N
CYS
CYS
3
24
0.64
1
N
C
C
HA2
VAL
GLY
1
23
0.65
1
N
C
CA
CA
ASN
LYS
5
26
0.65
1
N
C
CA
HA3
GLY
GLY
10
31
0.66
1
N
C
CE
HE3
LYS
LYS
8
29
0.66
1
N
C
HB2
HG2
GLU
GLU
9
30
0.66
1
N
C
HD22
CE
ASN
LYS
5
26
0.67
1
N
C
HB3
HB3
LYS
LYS
8
29
0.67
1
N
C
N
N
PHE
TRP
4
25
0.67
1
N
C
CG
CG
LYS
LYS
8
29
0.67
1
N
C
CB
CB
ASN
ASP
15
36
0.68
1
N
C
HB3
HB3
ARG
LYS
14
35
0.68
1
N
C
CB
CB
ARG
LYS
14
35
0.69
1
N
C
O
O
LYS
LYS
8
29
0.69
1
N
C
N
N
CYS
CYS
3
24
0.70
1
N
C
CB
HB3
ASN
LYS
5
26
0.70
1
N
C
CB
HB3
PHE
TRP
4
25
0.70
1
N
C
N
N
ASN
LYS
5
26
0.71
1
N
C
CA
CA
GLU
GLU
9
30
0.72
1
N
C
N
O
ARG
CYS
17
37
0.72
1
N
C
N
H
CYS
CYS
16
37
0.72
1
N
C
HB2
HB3
ASN
ASP
15
36
0.72
1
N
C
HA
CA
CYS
CYS
16
37
0.72
1
N
C
CB
CB
ASN
LYS
5
26
0.73
1
N
C
HB3
HB3
ASN
LYS
5
26
0.74
1
N
C
HD3
HD2
ARG
LYS
14
35
0.74
1
N
C
C
C
PHE
TRP
4
25
0.74
1
N
C
C
O
LYS
GLY
2
23
0.74
1
N
C
O
O
PHE
TRP
4
25
0.74
1
N
C
HB1
HB2
ALA
MET
13
34
0.74
1
N
C
N
H
ARG
LYS
14
35
0.74
1
N
C
H
H
CYS
CYS
3
24
0.75
1
N
C
CG
CG
ASN
LYS
5
26
0.75
1
N
C
HB2
HB2
ARG
LYS
14
35
0.75
1
N
C
O
O
HIS
HIS
11
32
0.75
1
N
C
HB3
HB3
CYS
CYS
16
37
0.76
1
N
C
H
H
ASN
LYS
5
26
0.76
1
N
C
HA
HA
ASN
LYS
5
26
0.76
1
N
C
HB2
HB2
LYS
LYS
8
29
0.79
1
N
C
C
N
CYS
TRP
3
25
0.79
1
N
C
HG3
HG3
ARG
LYS
14
35
0.80
1
N
C
HG23
HG2
THR
GLN
12
33
0.80
1
N
C
HZ1
NZ
LYS
LYS
8
29
0.81
1
N
C
HB2
HB2
ASN
LYS
5
26
0.81
1
N
C
CG2
CG
THR
GLN
12
33
0.81
1
N
C
HA
HA
CYS
CYS
16
37
0.82
1
N
C
HB3
OD1
ASN
ASP
15
36
0.82
1
N
C
O
O
CYS
CYS
3
24
0.82
1
N
C
HB
CB
THR
GLN
12
33
0.83
1
N
C
HB3
CG
ASN
ASP
15
36
0.83
1
N
C
HG1
HG3
THR
GLN
12
33
0.83
1
N
C
CA
HA
CYS
CYS
3
24
0.83
1
N
C
N
H
GLY
GLY
7
28
0.84
1
N
C
CD1
CG
PHE
TRP
4
25
0.84
1
N
C
CA
CA
PHE
TRP
4
25
0.84
1
N
C
HD22
HE2
ASN
LYS
5
26
0.85
1
N
C
HG2
HB3
GLU
GLU
9
30
0.86
1
N
C
HA
CA
ARG
LYS
14
35
0.86
1
N
C
O
O
ASN
ASP
15
36
0.86
1
N
C
HA
HA
GLU
GLU
9
30
0.86
1
N
C
NE
HB
ARG
THR
17
38
0.87
1
N
C
HA3
CA
GLY
GLY
7
28
0.87
1
N
C
HB3
CB
CYS
CYS
6
27
0.88
1
N
C
CA
HA
ASN
ASP
15
36
0.88
1
N
C
O
O
LYS
GLY
2
23
0.88
1
N
C
NZ
CE
LYS
LYS
8
29
0.88
1
N
C
HA
HA
PHE
TRP
4
25
0.88
1
N
C
C
C
LYS
GLY
2
23
0.89
1
N
C
ND1
HD1
HIS
HIS
11
32
0.89
1
N
C
HB2
CB
HIS
HIS
11
32
0.89
1
N
C
CD
HA
LYS
LYS
2
22
0.90
1
N
C
HE
HB
ARG
THR
17
38
0.90
1
N
C
H
H
PHE
TRP
4
25
0.91
1
N
C
CG
HB3
PHE
TRP
4
25
0.91
1
N
C
N
H
GLU
GLU
9
30
0.91
1
N
C
HA
CA
THR
GLN
12
33
0.91
1
N
C
C
N
ASN
CYS
15
37
0.91
1
N
C
CG
HA
ARG
THR
17
38
0.92
1
N
C
CB
HB2
CYS
CYS
16
37
0.92
1
N
C
N
H
PHE
TRP
4
25
0.93
1
N
C
HG3
C
LYS
LYS
2
22
0.93
1
N
C
CG
HA
LYS
LYS
2
22
0.94
1
N
C
CB
HB3
LYS
LYS
8
29
0.94
1
N
C
HH21
HG1
ARG
THR
17
38
0.94
1
N
C
HD2
HD2
HIS
HIS
11
32
0.94
1
N
C
H
N
ASN
ASP
15
36
0.95
1
N
C
HG2
CG
LYS
LYS
8
29
0.95
1
N
C
CA
HA2
GLY
GLY
7
28
0.96
1
N
C
CG
CG
ARG
LYS
14
35
0.96
1
N
C
N
CA
ASN
LYS
5
26
0.96
1
N
C
HA
CA
LYS
LYS
8
29
0.96
1
N
C
N
HA2
LYS
GLY
2
23
0.97
1
N
C
C
N
LYS
GLU
8
30
0.98
1
N
C
HZ2
NZ
LYS
LYS
8
29
0.98
1
N
C
HB2
CB
CYS
CYS
3
24
0.99
1
N
C
HB2
CB
ASN
LYS
5
26
0.99
1
N
C
HA
CA
ALA
MET
13
34
0.99
1
N
C
O
O
GLY
GLY
10
31
0.99
1
N
C
CB
HB2
CYS
CYS
6
27
1.00
1
N
C
C
O
CYS
CYS
16
37
1.00
1
N
C
HA
CA
LYS
GLY
2
23
1.00
1
N
C
N
H
HIS
HIS
11
32
1.01
1
N
C
HG21
HG2
THR
GLN
12
33
1.01
1
N
C
H
N
CYS
CYS
6
27
1.01
1
N
C
HB2
CB
LYS
LYS
8
29
1.01
1
N
C
CA
C
PHE
TRP
4
25
1.01
1
N
C
CB
HB2
ALA
MET
13
34
1.01
1
N
C
N
H
THR
GLN
12
33
1.01
1
N
C
ND2
CD
ASN
LYS
5
26
1.02
1
N
C
C
N
PHE
LYS
4
26
1.02
1
N
C
HG3
CA
LYS
LYS
2
22
1.02
1
N
C
N
H
CYS
CYS
6
27
1.03
1
N
C
CB
CG
GLU
GLU
9
30
1.03
1
N
C
CD
O
ARG
THR
17
38
1.04
1
N
C
CG
CD
ASN
LYS
5
26
1.04
1
N
C
N
H
ASN
ASP
15
36
1.04
1
N
C
CD
CD
LYS
LYS
8
29
1.04
1
N
C
HB3
CB
CYS
CYS
3
24
1.05
1
N
C
H
N
HIS
HIS
11
32
1.05
1
N
C
HZ2
HZ3
LYS
LYS
8
29
1.06
1
N
C
CA
HA
HIS
HIS
11
32
1.06
1
N
C
O
C
ARG
LYS
14
35
1.07
1
N
C
CA
N
LYS
GLY
2
23
1.07
1
N
C
CD
HD3
LYS
LYS
8
29
1.07
1
N
C
OG1
HB2
THR
GLN
12
33
1.07
1
N
C
HD2
C
ARG
THR
17
38
1.07
1
N
C
H
N
THR
GLN
12
33
1.07
1
N
C
HB3
HB3
ALA
MET
13
34
1.08
1
N
C
HB2
CB
ASN
ASP
15
36
1.08
1
N
C
HG2
HG2
ARG
LYS
14
35
1.08
1
N
C
HG22
CD
THR
GLN
12
33
1.08
1
N
C
N
C
HIS
GLY
11
31
1.08
1
N
C
CE1
HE1
HIS
HIS
11
32
1.08
1
N
C
HB2
HB2
PHE
TRP
4
25
1.08
1
N
C
CG
CB
ASN
ASP
15
36
1.09
1
N
C
CA
HA
CYS
CYS
6
27
1.09
1
N
C
HA
CA
CYS
CYS
6
27
1.09
1
N
C
O
C
CYS
CYS
3
24
1.09
1
N
C
HD1
ND1
HIS
HIS
11
32
1.10
1
N
C
CE
CE
LYS
LYS
8
29
1.10
1
N
C
HA
N
LYS
GLY
2
23
1.10
1
N
C
HB1
CB
ALA
MET
13
34
1.11
1
N
C
H
N
ASN
LYS
5
26
1.11
1
N
C
CB
HB3
HIS
HIS
11
32
1.11
1
N
C
CB
CB
GLU
GLU
9
30
1.11
1
N
C
HG3
HD2
LYS
LYS
8
29
1.11
1
N
C
NH1
HE2
ARG
LYS
14
35
1.12
1
N
C
HH21
CB
ARG
THR
17
38
1.12
1
N
C
HE1
NE1
PHE
TRP
4
25
1.12
1
N
C
CA
HA2
GLY
GLY
10
31
1.12
1
N
C
CB
HG2
GLU
GLU
9
30
1.12
1
N
C
HB3
CB
CYS
CYS
16
37
1.12
1
N
C
HB3
CB
HIS
HIS
11
32
1.12
1
N
C
HD22
HE3
ASN
LYS
5
26
1.12
1
N
C
HD3
HG2
LYS
LYS
2
22
1.13
1
N
C
HG2
CA
ARG
THR
17
38
1.13
1
N
C
HZ3
CE
LYS
LYS
8
29
1.13
1
N
C
HG23
CG
THR
GLN
12
33
1.13
1
N
C
HE1
CE1
HIS
HIS
11
32
1.13
1
N
C
NE
HE3
ARG
LYS
14
35
1.14
1
N
C
O
O
GLY
GLY
7
28
1.14
1
N
C
HB2
CG
ALA
MET
13
34
1.14
1
N
C
CG
HG2
ASN
LYS
5
26
1.15
1
N
C
HD2
CD
LYS
LYS
8
29
1.15
1
N
C
HB3
HG3
GLU
GLU
9
30
1.15
1
N
C
C
N
THR
MET
12
34
1.15
1
N
C
N
C
CYS
GLY
3
23
1.16
1
N
C
CA
CA
LYS
GLY
2
23
1.16
1
N
C
O
C
ALA
MET
13
34
1.16
1
N
C
HB3
CB
ALA
MET
13
34
1.16
1
N
C
N
C
THR
HIS
12
32
1.17
1
N
C
CB
CB
PHE
TRP
4
25
1.17
1
N
C
H
N
GLY
GLY
7
28
1.17
1
N
C
O
C
ASN
ASP
15
36
1.17
1
N
C
O
C
CYS
CYS
6
27
1.17
1
N
C
CZ
CE
ARG
LYS
14
35
1.18
1
N
C
HB2
HB3
LYS
LYS
8
29
1.18
1
N
C
CB
HB3
ALA
MET
13
34
1.18
1
N
C
CB
HB3
ARG
LYS
14
35
1.18
1
N
C
HA
CA
HIS
HIS
11
32
1.18
1
N
C
CA
CB
ASN
LYS
5
26
1.19
1
N
C
NH1
HE3
ARG
LYS
14
35
1.19
1
N
C
HD2
HG3
LYS
LYS
2
22
1.20
1
N
C
N
C
GLY
GLU
10
30
1.20
1
N
C
CE1
ND1
HIS
HIS
11
32
1.20
1
N
C
HH22
OG1
ARG
THR
17
38
1.20
1
N
C
CB
CA
CYS
CYS
3
24
1.20
1
N
C
CG
ND1
HIS
HIS
11
32
1.20
1
N
C
CA
H
LYS
GLY
2
23
1.21
1
N
C
CG
CB
PHE
TRP
4
25
1.21
1
N
C
HB2
HB3
ASN
LYS
5
26
1.21
1
N
C
CA
C
LYS
LYS
8
29
1.21
1
N
C
N
H
ALA
MET
13
34
1.21
1
N
C
HH22
HZ3
ARG
LYS
14
35
1.21
1
N
C
CA
HA
ALA
MET
13
34
1.21
1
N
C
HD2
CD2
HIS
HIS
11
32
1.21
1
N
C
HD3
CD
ARG
LYS
14
35
1.22
1
N
C
C
C
CYS
CYS
16
37
1.22
1
N
C
NE2
CE1
HIS
HIS
11
32
1.22
1
N
C
OD1
HG2
ASN
LYS
5
26
1.22
1
N
C
HG23
HG3
THR
GLN
12
33
1.22
1
N
C
CB
CA
ASN
ASP
15
36
1.23
1
N
C
N
C
LYS
GLY
8
28
1.23
1
N
C
H
N
ARG
LYS
14
35
1.23
1
N
C
HB3
CG
ALA
MET
13
34
1.23
1
N
C
ND2
HB2
ASN
ASP
15
36
1.23
1
N
C
HA3
HA2
GLY
GLY
7
28
1.23
1
N
C
CA
C
GLU
GLU
9
30
1.24
1
N
C
CB
HB3
CYS
CYS
16
37
1.24
1
N
C
C
O
HIS
HIS
11
32
1.24
1
N
C
CA
CB
CYS
CYS
16
37
1.24
1
N
C
CA
HA
LYS
LYS
8
29
1.24
1
N
C
CB
HB3
CYS
CYS
3
24
1.24
1
N
C
HB1
HB3
ALA
MET
13
34
1.25
1
N
C
HB2
CB
CYS
CYS
6
27
1.25
1
N
C
CB
HB2
CYS
CYS
3
24
1.25
1
N
C
C
N
CYS
GLY
6
28
1.25
1
N
C
HH21
HZ2
ARG
LYS
14
35
1.25
1
N
C
HB2
HG3
ALA
MET
13
34
1.25
1
N
C
HB2
CB
CYS
CYS
16
37
1.25
1
N
C
CA
HA
ASN
LYS
5
26
1.26
1
N
C
CA
N
HIS
HIS
11
32
1.26
1
N
C
O
C
GLY
GLY
7
28
1.26
1
N
C
CZ
HB
ARG
THR
17
38
1.26
1
N
C
HG2
CD
ARG
LYS
14
35
1.26
1
N
C
H
N
GLU
GLU
9
30
1.26
1
N
C
N
C
ALA
GLN
13
33
1.26
1
N
C
CB
HB2
THR
GLN
12
33
1.26
1
N
C
CG
CB
ARG
LYS
14
35
1.26
1
N
C
CG
HG3
LYS
LYS
8
29
1.27
1
N
C
HG22
CG
THR
GLN
12
33
1.27
1
N
C
H
N
ALA
MET
13
34
1.27
1
N
C
C
N
ASN
CYS
5
27
1.27
1
N
C
N
CA
GLY
GLY
10
31
1.28
1
N
C
C
O
ASN
LYS
5
26
1.28
1
N
C
HG3
HB3
GLU
GLU
9
30
1.28
1
N
C
CA
HA
THR
GLN
12
33
1.28
1
N
C
C
O
PHE
TRP
4
25
1.28
1
N
C
CB
CA
HIS
HIS
11
32
1.28
1
N
C
ND2
CE
ASN
LYS
5
26
1.28
1
N
C
CB
HB3
THR
GLN
12
33
1.28
1
N
C
HB3
CB
LYS
LYS
8
29
1.29
1
N
C
C
N
ARG
ASP
14
36
1.29
1
N
C
ND1
CG
HIS
HIS
11
32
1.29
1
N
C
CA
CB
ALA
MET
13
34
1.29
1
N
C
HG3
HA
LYS
LYS
2
22
1.29
1
N
C
CG
CB
LYS
LYS
8
29
1.29
1
N
C
HD1
CD1
PHE
TRP
4
25
1.29
1
N
C
HB2
HB2
ALA
MET
13
34
1.29
1
N
C
HA
HA3
LYS
GLY
2
23
1.30
1
N
C
CA
N
ARG
LYS
14
35
1.30
1
N
C
C
N
ALA
LYS
13
35
1.30
1
N
C
O
C
ASN
LYS
5
26
1.30
1
N
C
HZ1
HZ3
LYS
LYS
8
29
1.30
1
N
C
HZ3
NZ
LYS
LYS
8
29
1.30
1
N
C
CB
CG
THR
GLN
12
33
1.30
1
N
C
C
O
GLY
GLY
7
28
1.30
1
N
C
HZ2
HZ1
LYS
LYS
8
29
1.30
1
N
C
HG3
CG
ARG
LYS
14
35
1.30
1
N
C
NZ
HZ2
LYS
LYS
8
29
1.30
1
N
C
H
N
CYS
CYS
16
37
1.30
1
N
C
HB2
CB
ALA
MET
13
34
1.30
1
N
C
O
C
LYS
LYS
8
29
1.30
1
N
C
HD2
HA
LYS
LYS
2
22
1.31
1
N
C
CD
CG
LYS
LYS
8
29
1.31
1
N
C
CB
HB2
HIS
HIS
11
32
1.31
1
N
C
CB
HB2
LYS
LYS
8
29
1.31
1
N
C
C
N
GLY
LYS
7
29
1.32
1
N
C
C
O
CYS
CYS
6
27
1.32
1
N
C
HD2
HD2
ARG
LYS
14
35
1.32
1
N
C
HA
CA
ASN
LYS
5
26
1.32
1
N
C
C
O
LYS
LYS
8
29
1.32
1
N
C
HD1
HD1
PHE
TRP
4
25
1.32
1
N
C
HB3
HB3
PHE
TRP
4
25
1.32
1
N
C
HG22
HG2
THR
GLN
12
33
1.32
1
N
C
N
H
ASN
LYS
5
26
1.32
1
N
C
C
CA
GLY
GLY
10
31
1.32
1
N
C
CD2
HE3
PHE
TRP
4
25
1.32
1
N
C
NH2
HZ2
ARG
LYS
14
35
1.32
1
N
C
O
HA2
VAL
GLY
1
23
1.32
1
N
C
HH12
HE2
ARG
LYS
14
35
1.33
1
N
C
ND2
CG
ASN
LYS
5
26
1.33
1
N
C
HB3
HG2
GLU
GLU
9
30
1.33
1
N
C
HA2
CA
GLY
GLY
7
28
1.33
1
N
C
CD2
CG
HIS
HIS
11
32
1.33
1
N
C
CB
CG
ASN
ASP
15
36
1.33
1
N
C
H
N
LYS
LYS
8
29
1.34
1
N
C
N
C
ASN
LYS
15
35
1.34
1
N
C
CB
HB3
CYS
CYS
6
27
1.34
1
N
C
HD2
HE3
PHE
TRP
4
25
1.34
1
N
C
HA
C
CYS
CYS
16
37
1.34
1
N
C
HA2
CA
GLY
GLY
10
31
1.34
1
N
C
CB
CG
ALA
MET
13
34
1.35
1
N
C
ND1
CE1
HIS
HIS
11
32
1.35
1
N
C
CD2
HD2
HIS
HIS
11
32
1.35
1
N
C
H
O
ARG
CYS
17
37
1.36
1
N
C
N
C
ARG
MET
14
34
1.36
1
N
C
CA
CB
ARG
LYS
14
35
1.36
1
N
C
CD
C
ARG
THR
17
38
1.36
1
N
C
HB3
CB
ARG
LYS
14
35
1.36
1
N
C
CA
N
THR
GLN
12
33
1.36
1
N
C
CD
CD
ARG
LYS
14
35
1.37
1
N
C
NZ
HZ3
LYS
LYS
8
29
1.37
1
N
C
O
HA3
VAL
GLY
1
23
1.37
1
N
C
CB
CA
LYS
LYS
8
29
1.37
1
N
C
O
C
HIS
HIS
11
32
1.37
1
N
C
C
O
ALA
MET
13
34
1.37
1
N
C
HB3
CB
GLU
GLU
9
30
1.37
1
N
C
CA
HA3
GLY
GLY
7
28
1.37
1
N
C
N
C
GLY
CYS
7
27
1.37
1
N
C
CG
H
LYS
GLY
2
23
1.37
1
N
C
NH1
CE
ARG
LYS
14
35
1.37
1
N
C
ND2
HG3
ASN
LYS
5
26
1.38
1
N
C
CG
CA
ARG
THR
17
38
1.38
1
N
C
O
C
GLY
GLY
10
31
1.38
1
N
C
OD1
HB2
ASN
ASP
15
36
1.39
1
N
C
HA
CA
ASN
ASP
15
36
1.39
1
N
C
C
O
ARG
LYS
14
35
1.39
1
N
C
C
CA
ARG
LYS
14
35
1.39
1
N
C
CA
C
CYS
CYS
3
24
1.39
1
N
C
NE2
CD2
HIS
HIS
11
32
1.39
1
N
C
CA
N
GLY
GLY
7
28
1.39
1
N
C
HA
CA
CYS
CYS
3
24
1.39
1
N
C
N
H
LYS
LYS
8
29
1.40
1
N
C
CB
HB3
GLU
GLU
9
30
1.40
1
N
C
HD2
CA
LYS
LYS
2
22
1.41
1
N
C
N
CA
LYS
GLY
2
23
1.41
1
N
C
NH2
HG1
ARG
THR
17
38
1.41
1
N
C
C
N
HIS
GLN
11
33
1.41
1
N
C
N
CA
CYS
CYS
6
27
1.41
1
N
C
CG
HD3
ASN
LYS
5
26
1.42
1
N
C
CD1
CD1
PHE
TRP
4
25
1.42
1
N
C
CE1
NE2
HIS
HIS
11
32
1.42
1
N
C
CA
C
CYS
CYS
16
37
1.42
1
N
C
N
CA
CYS
CYS
3
24
1.42
1
N
C
CD2
NE2
HIS
HIS
11
32
1.42
1
N
C
HA
C
PHE
TRP
4
25
1.42
1
N
C
N
C
CYS
LYS
6
26
1.43
1
N
C
CB
N
LYS
GLY
2
23
1.43
1
N
C
CA
HA
ARG
LYS
14
35
1.43
1
N
C
N
CA
ASN
ASP
15
36
1.43
1
N
C
OG1
HG3
THR
GLN
12
33
1.43
1
N
C
CA
C
ASN
ASP
15
36
1.44
1
N
C
CG
CD
ARG
LYS
14
35
1.44
1
N
C
CB
CG
ASN
LYS
5
26
1.45
1
N
C
CD
HG2
LYS
LYS
8
29
1.45
1
N
C
CA
CB
CYS
CYS
6
27
1.45
1
N
C
C
CA
ALA
MET
13
34
1.45
1
N
C
HD1
CG
PHE
TRP
4
25
1.45
1
N
C
CA
C
THR
GLN
12
33
1.45
1
N
C
CG
HB2
ARG
LYS
14
35
1.45
1
N
C
CG
CD
LYS
LYS
8
29
1.45
1
N
C
HZ2
CE
LYS
LYS
8
29
1.45
1
N
C
HG2
CB
GLU
GLU
9
30
1.45
1
N
C
HB3
CD
GLU
GLU
9
30
1.46
1
N
C
CB
CA
THR
GLN
12
33
1.46
1
N
C
C
CA
GLY
GLY
7
28
1.46
1
N
C
HE2
CE
LYS
LYS
8
29
1.46
1
N
C
C
O
GLY
GLY
10
31
1.46
1
N
C
N
CA
CYS
CYS
16
37
1.47
1
N
C
CB
HB3
ASN
ASP
15
36
1.47
1
N
C
OG1
CB
THR
GLN
12
33
1.47
1
N
C
N
CA
GLU
GLU
9
30
1.47
1
N
C
NZ
HZ1
LYS
LYS
8
29
1.47
1
N
C
CG
HG3
ARG
LYS
14
35
1.47
1
N
C
CE1
NE1
PHE
TRP
4
25
1.48
1
N
C
HG22
NE2
THR
GLN
12
33
1.48
1
N
C
H
N
PHE
TRP
4
25
1.48
1
N
C
CE2
CE3
PHE
TRP
4
25
1.49
1
N
C
CG
CB
GLU
GLU
9
30
1.49
1
N
C
H
C
CYS
GLY
3
23
1.50
1
N
C
CA
C
LYS
GLY
2
23
1.50
1
N
C
HD2
CG
LYS
LYS
2
22
1.50
1
N
C
CG
CB
HIS
HIS
11
32
1.50
1
N
C
N
CA
ALA
MET
13
34
1.50
1
N
C
CG
CG
PHE
TRP
4
25
1.50
1
N
C
NH2
CB
ARG
THR
17
38
1.50
1
N
C
OD1
HD3
ASN
LYS
5
26
1.51
1
N
C
HG3
C
ARG
THR
17
38
1.51
1
N
C
CA
CB
GLU
GLU
9
30
1.51
1
N
C
C
CA
HIS
HIS
11
32
1.51
1
N
C
C
H
CYS
TRP
3
25
1.52
1
N
C
CG
CA
LYS
LYS
2
22
1.52
1
N
C
HA
CB
GLU
GLU
9
30
1.52
1
N
C
CG
HD2
ARG
LYS
14
35
1.52
1
N
C
CB
HB2
PHE
TRP
4
25
1.52
1
N
C
CA
C
ASN
LYS
5
26
1.53
1
N
C
C
CA
CYS
CYS
6
27
1.53
1
N
C
N
CA
PHE
TRP
4
25
1.53
1
N
C
HD2
CB
LYS
LYS
2
22
1.53
1
N
C
CG
CD2
HIS
HIS
11
32
1.53
1
N
C
ND2
HE3
ASN
LYS
5
26
1.53
1
N
C
NE
CB
ARG
THR
17
38
1.54
1
N
C
CA
N
ALA
MET
13
34
1.54
1
N
C
C
N
GLY
HIS
10
32
1.54
1
N
C
O
C
PHE
TRP
4
25
1.54
1
N
C
CA
C
CYS
CYS
6
27
1.54
1
N
C
N
H
GLY
GLY
10
31
1.54
1
N
C
C
O
THR
GLN
12
33
1.55
1
N
C
HB2
CG
GLU
GLU
9
30
1.56
1
N
C
CD2
CE3
PHE
TRP
4
25
1.56
1
N
C
HG3
CD
LYS
LYS
8
29
1.56
1
N
C
CA
N
LYS
LYS
8
29
1.56
1
N
C
NZ
HE3
LYS
LYS
8
29
1.56
1
N
C
HG3
CA
ARG
THR
17
38
1.57
1
N
C
N
CA
LYS
LYS
8
29
1.57
1
N
C
NH2
NZ
ARG
LYS
14
35
1.58
1
N
C
C
O
CYS
CYS
3
24
1.58
1
N
C
OXT
HD3
ARG
LYS
17
26
1.58
1
N
C
CA
HA
CYS
CYS
16
37
1.58
1
N
C
CZ
CE2
PHE
TRP
4
25
1.58
1
N
C
CA
N
CYS
CYS
6
27
1.59
1
N
C
H
C
GLY
GLU
10
30
1.59
1
N
C
C
O
ASN
ASP
15
36
1.59
1
N
C
HA3
CA
GLY
GLY
10
31
1.59
1
N
C
CA
C
GLY
GLY
7
28
1.59
1
N
C
CB
HB2
ASN
LYS
5
26
1.59
1
N
C
C
H
ASN
CYS
15
37
1.59
1
N
C
CA
N
ASN
ASP
15
36
1.59
1
N
C
HB2
CB
PHE
TRP
4
25
1.59
1
N
C
N
H
CYS
CYS
3
24
1.59
1
N
C
CA
CB
THR
GLN
12
33
1.60
1
N
C
CD
OE1
GLU
GLU
9
30
1.60
1
N
C
CE1
CD1
PHE
TRP
4
25
1.60
1
N
C
CE1
CE2
PHE
TRP
4
25
1.61
1
N
C
CB
CG
HIS
HIS
11
32
1.62
1
N
C
CA
C
HIS
HIS
11
32
1.62
1
N
C
N
C
GLU
LYS
9
29
1.62
1
N
C
CB
CA
CYS
CYS
6
27
1.62
1
N
C
CA
CB
PHE
TRP
4
25
1.62
1
N
C
N
CA
GLY
GLY
7
28
1.63
1
N
C
O
C
THR
GLN
12
33
1.63
1
N
C
C
N
GLU
GLY
9
31
1.63
1
N
C
O
CA
VAL
GLY
1
23
1.63
1
N
C
C
CA
VAL
GLY
1
23
1.64
1
N
C
CE1
CD2
PHE
TRP
4
25
1.64
1
N
C
CA
C
ALA
MET
13
34
1.64
1
N
C
CE1
CG
PHE
TRP
4
25
1.64
1
N
C
CB
SG
CYS
CYS
6
27
1.64
1
N
C
N
CA
THR
GLN
12
33
1.65
1
N
C
OG1
CG
THR
GLN
12
33
1.65
1
N
C
CD1
CB
PHE
TRP
4
25
1.65
1
N
C
OE1
CD
GLU
GLU
9
30
1.66
1
N
C
CB
SG
CYS
CYS
16
37
1.66
1
N
C
C
CA
THR
GLN
12
33
1.67
1
N
C
CZ
CB
ARG
THR
17
38
1.68
1
N
C
CZ
CD2
PHE
TRP
4
25
1.68
1
N
C
O
N
CYS
TRP
3
25
1.68
1
N
C
CG
C
ARG
THR
17
38
1.68
1
N
C
CA
N
CYS
CYS
16
37
1.69
1
N
C
SG
CB
CYS
CYS
3
24
1.70
1
N
C
CA
C
ARG
LYS
14
35
1.70
1
N
C
CA
N
GLU
GLU
9
30
1.71
1
N
C
CE
CD
LYS
LYS
8
29
1.71
1
N
C
C
CA
ASN
LYS
5
26
1.71
1
N
C
CD
CA
LYS
LYS
2
22
1.73
1
N
C
N
CA
ARG
LYS
14
35
1.73
1
N
C
N
C
CYS
ASP
16
36
1.73
1
N
C
CG
N
LYS
GLY
2
23
1.73
1
N
C
CA
N
CYS
CYS
3
24
1.74
1
N
C
CB
CG
LYS
LYS
8
29
1.75
1
N
C
N
CA
HIS
HIS
11
32
1.75
1
N
C
CA
CB
LYS
LYS
8
29
1.75
1
N
C
C
CA
ASN
ASP
15
36
1.76
1
N
C
CB
CA
CYS
CYS
16
37
1.77
1
N
C
CB
CA
ALA
MET
13
34
1.77
1
N
C
OD1
CG
ASN
LYS
5
26
1.77
1
N
C
CG2
CB
THR
GLN
12
33
1.77
1
N
C
N
CB
ASN
LYS
5
26
1.78
1
N
C
CZ
OG1
ARG
THR
17
38
1.78
1
N
C
N
C
PHE
CYS
4
24
1.78
1
N
C
C
CA
CYS
CYS
3
24
1.78
1
N
C
N
N
LYS
GLY
2
23
1.78
1
N
C
N
O
CYS
GLY
3
23
1.79
1
N
C
CD1
CD2
PHE
TRP
4
25
1.79
1
N
C
C
CA
PHE
LYS
4
26
1.79
1
N
C
CA
CB
HIS
HIS
11
32
1.80
1
N
C
CG
C
LYS
LYS
2
22
1.80
1
N
C
CA
N
PHE
TRP
4
25
1.80
1
N
C
CA
O
GLU
GLU
9
30
1.80
1
N
C
NE
O
ARG
THR
17
38
1.81
1
N
C
N
O
GLY
GLU
10
30
1.81
1
N
C
C
N
LYS
CYS
2
24
1.82
1
N
C
O
C
GLU
GLU
9
30
1.82
1
N
C
O
N
ASN
CYS
15
37
1.83
1
N
C
CG
CG
ASN
ASP
15
36
1.83
1
N
C
O
O
THR
GLN
12
33
1.83
1
N
C
OD1
CD
ASN
LYS
5
26
1.83
1
N
C
CB
OD1
ASN
ASP
15
36
1.83
1
N
C
CB
CA
ARG
LYS
14
35
1.83
1
N
C
CA
CB
CYS
CYS
3
24
1.84
1
N
C
C
CA
LYS
LYS
8
29
1.85
1
N
C
N
C
ASN
TRP
5
25
1.85
1
N
C
CA
O
LYS
GLY
2
23
1.85
1
N
C
ND2
CB
ASN
ASP
15
36
1.86
1
N
C
CA
N
GLY
GLY
10
31
1.86
1
N
C
CE2
CD2
PHE
TRP
4
25
1.87
1
N
C
CA
N
PHE
LYS
4
26
1.87
1
N
C
CG2
CD
THR
GLN
12
33
1.87
1
N
C
NE
CE
ARG
LYS
14
35
1.87
1
N
C
N
C
ARG
CYS
17
37
1.88
1
N
C
CA
C
GLY
GLY
10
31
1.89
1
N
C
CA
O
ARG
CYS
17
37
1.90
1
N
C
O
N
LYS
GLU
8
30
1.90
1
N
C
CD
CA
ARG
THR
17
38
1.90
1
N
C
CD
CG
LYS
LYS
2
22
1.92
1
N
C
CG
CB
ASN
LYS
5
26
1.92
1
N
C
CA
CB
ASN
ASP
15
36
1.92
1
N
C
CZ
NZ
ARG
LYS
14
35
1.92
1
N
C
O
O
CYS
CYS
16
37
1.93
1
N
C
CB
SG
CYS
CYS
3
24
1.93
1
N
C
CA
O
PHE
TRP
4
25
1.95
1
N
C
CE2
CZ3
PHE
TRP
4
25
1.95
1
N
C
NE
CA
ARG
THR
17
38
1.95
1
N
C
NZ
CD
LYS
LYS
8
29
1.96
1
N
C
NH2
CE
ARG
LYS
14
35
1.97
1
N
C
O
N
THR
MET
12
34
1.97
1
N
C
CD
CE
LYS
LYS
8
29
1.98
1
N
C
CG
CD2
PHE
TRP
4
25
1.98
1
N
C
C
CA
CYS
CYS
16
37
1.98
1
N
C
O
C
LYS
GLY
2
23
1.99
1
N
C
CD2
ND1
HIS
HIS
11
32
1.99
1
N
C
N
O
LYS
GLY
8
28
1.99
1
N
C
CB
CA
PHE
TRP
4
25
1.99
1
N
C
O
C
CYS
CYS
16
37
2.00
1
N
C
SG
CB
CYS
CYS
6
27
2.00
1
N
C
SG
CB
CYS
CYS
16
37
2.00
1
N
C
CD2
CD2
PHE
TRP
4
25
2.00
1
N
C
CB
CA
GLU
GLU
9
30
2.01
1
N
C
CD2
CE1
HIS
HIS
11
32
2.02
1
N
C
C
CA
CYS
TRP
3
25
2.02
1
N
C
C
CA
GLU
GLU
9
30
2.02
1
N
C
C
CA
LYS
GLU
8
30
2.03
1
N
C
CB
CA
ASN
LYS
5
26
2.05
1
N
C
CE
CG
LYS
LYS
8
29
2.05
1
N
C
NE2
ND1
HIS
HIS
11
32
2.05
1
N
C
CA
CG
ASN
LYS
5
26
2.05
1
N
C
CE1
CG
HIS
HIS
11
32
2.06
1
N
C
CE
NZ
LYS
LYS
8
29
2.06
1
N
C
CA
O
CYS
CYS
16
37
2.06
1
N
C
CA
N
CYS
TRP
3
25
2.07
1
N
C
O
N
ALA
LYS
13
35
2.07
1
N
C
O
CA
CYS
TRP
3
25
2.07
1
N
C
O
CA
ARG
LYS
14
35
2.07
1
N
C
O
N
CYS
GLY
6
28
2.08
1
N
C
ND2
OD2
ASN
ASP
15
36
2.08
1
N
C
NE
C
ARG
THR
17
38
2.08
1
N
C
N
O
ALA
GLN
13
33
2.08
1
N
C
CZ
CZ2
PHE
TRP
4
25
2.09
1
N
C
CA
O
LYS
LYS
8
29
2.09
1
N
C
CB
CG
ARG
LYS
14
35
2.09
1
N
C
N
O
HIS
GLY
11
31
2.10
1
N
C
O
N
GLY
LYS
7
29
2.10
1
N
C
CG
CE1
HIS
HIS
11
32
2.10
1
N
C
CB
CD
ASN
LYS
5
26
2.10
1
N
C
CA
N
ASN
LYS
5
26
2.10
1
N
C
CA
C
HIS
GLY
11
31
2.11
1
N
C
O
N
PHE
LYS
4
26
2.11
1
N
C
N
CA
HIS
GLY
11
31
2.11
1
N
C
CG
OD2
ASN
ASP
15
36
2.11
1
N
C
C
CA
LYS
GLY
2
23
2.11
1
N
C
C
CA
ASN
CYS
15
37
2.12
1
N
C
N
O
THR
HIS
12
32
2.12
1
N
C
CE1
CD2
HIS
HIS
11
32
2.12
1
N
C
O
CA
LYS
GLU
8
30
2.12
1
N
C
CB
C
ASN
ASP
15
36
2.13
1
N
C
OD1
CB
ASN
ASP
15
36
2.13
1
N
C
CG
CA
ASN
ASP
15
36
2.14
1
N
C
CA
CG
GLU
GLU
9
30
2.14
1
N
C
N
C
PHE
TRP
4
25
2.14
1
N
C
N
N
PHE
LYS
4
26
2.15
1
N
C
N
C
LYS
LYS
8
29
2.15
1
N
C
CA
N
LYS
GLU
8
30
2.15
1
N
C
CA
N
ASN
CYS
15
37
2.16
1
N
C
CZ
O
ARG
THR
17
38
2.17
1
N
C
NE2
CG
HIS
HIS
11
32
2.17
1
N
C
CB
N
HIS
HIS
11
32
2.17
1
N
C
NE
CD
ARG
LYS
14
35
2.18
1
N
C
ND1
CD2
HIS
HIS
11
32
2.18
1
N
C
CG
CA
LYS
LYS
8
29
2.18
1
N
C
CB
C
LYS
LYS
8
29
2.18
1
N
C
N
C
LYS
GLY
2
23
2.19
1
N
C
CD
CB
LYS
LYS
2
22
2.19
1
N
C
CG
CE
ASN
LYS
5
26
2.19
1
N
ARG
14
0.312
SIDE CHAIN
1
N
ARG
17
0.313
SIDE CHAIN
1
19.60
2.30
111.70
131.30
N
N
N
CD
CE
NZ
LYS
LYS
LYS
2
2
2
N
1
-6.33
1.00
110.10
103.77
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
25
25
25
N
1
9.10
1.10
130.40
139.50
C
C
C
NE1
CE2
CZ2
TRP
TRP
TRP
25
25
25
N
1
-7.00
1.00
107.30
100.30
C
C
C
NE1
CE2
CD2
TRP
TRP
TRP
25
25
25
N
1
N
N
CG
ND1
HIS
HIS
11
11
-0.118
0.015
1.369
1.251
N
1
C
C
CG
CD2
TRP
TRP
25
25
-0.111
0.017
1.432
1.321
N
1
C
C
CG
ND1
HIS
HIS
32
32
-0.115
0.015
1.369
1.254
N
1
N
ASN
5
-90.41
-69.35
1
N
ALA
13
-68.45
29.33
1
N
ASN
15
-108.62
43.71
1
C
LYS
26
-99.73
-70.52
1
C
GLN
33
-79.02
-127.62
1
C
ASP
36
-109.02
48.46
1
C
CYS
37
-102.76
51.92
HIV-1 P7 NUCLEOCAPSID PROTEIN (TWO ZINC BINDING DOMAINS) (NMR, MINIMIZED AVERAGE STRUCTURE)
STRUCTURAL CHARACTERIZATION OF A 39 RESIDUE SYNTHETIC PEPTIDE CONTAINING THE TWO ZINC BINDING DOMAINS FROM THE HIV-1 P7 NUCLEOCAPSID PROTEIN BY CD AND NMR SPECTROSCOPY
1
N
N
2
N
N
3
N
N
3
N
N
metalc
1.984
C
ZN
61
D
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
metalc
2.300
C
ZN
61
D
ZN
ZN
1_555
C
CYS
27
B
SG
CYS
6
1_555
metalc
2.000
C
ZN
61
D
ZN
ZN
1_555
C
HIS
32
B
NE2
HIS
11
1_555
metalc
2.101
C
ZN
61
D
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
metalc
2.451
C
ZN
61
D
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
metalc
2.288
C
ZN
61
D
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
metalc
2.418
C
ZN
61
D
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
metalc
2.301
C
ZN
61
D
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
metalc
2.197
N
ZN
60
C
ZN
ZN
1_555
C
CYS
27
B
SG
CYS
6
1_555
metalc
1.943
N
ZN
60
C
ZN
ZN
1_555
C
HIS
32
B
NE2
HIS
11
1_555
metalc
2.002
N
ZN
60
C
ZN
ZN
1_555
N
HIS
11
A
NE2
HIS
11
1_555
metalc
2.301
N
ZN
60
C
ZN
ZN
1_555
N
CYS
6
A
SG
CYS
6
1_555
metalc
2.185
N
ZN
60
C
ZN
ZN
1_555
C
CYS
24
B
SG
CYS
3
1_555
metalc
2.297
N
ZN
60
C
ZN
ZN
1_555
N
CYS
3
A
SG
CYS
3
1_555
metalc
2.617
N
ZN
60
C
ZN
ZN
1_555
C
CYS
37
B
SG
CYS
16
1_555
metalc
2.299
N
ZN
60
C
ZN
ZN
1_555
N
CYS
16
A
SG
CYS
16
1_555
VIRAL PROTEIN
NUCLEOCAPSID PROTEIN, Viral protein
POL_HV1H2
UNP
1
1
P04585
GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT
VATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEE
KAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTS
TLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYLDRFYKTLRAEQASQEVKNWMTETL
LVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTATIMMQRGNFRNQRKMVKCFNCGKEGHT
ARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPTAPPEESFRSGVET
TTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ
POL_HV1U4
UNP
2
1
P24740
GARASVLSAGELDKWEKIRLRPGGKKQYRLKHIVWASRELERFAVDPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT
VATLYCVHQKIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEE
KAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTS
TLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETL
LVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHI
AKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPSEESVRFGEETTTPSQKQEPIDK
ELYPLASLRSLFGSDPSSQ
389
405
1NCP
1
17
P04585
N
1
1
17
410
427
1NCP
22
39
P24740
C
2
1
18
2
parallel
N
LYS
2
A
LYS
2
N
CYS
16
A
CYS
16
C
CYS
24
B
CYS
3
C
CYS
37
B
CYS
16
BINDING SITE FOR RESIDUE ZN N 60
Software
8
BINDING SITE FOR RESIDUE ZN C 61
Software
8
C
CYS
24
B
CYS
3
8
1_555
C
CYS
27
B
CYS
6
8
1_555
C
HIS
32
B
HIS
11
8
1_555
C
CYS
37
B
CYS
16
8
1_555
N
CYS
3
A
CYS
3
8
1_555
N
CYS
6
A
CYS
6
8
1_555
N
HIS
11
A
HIS
11
8
1_555
N
CYS
16
A
CYS
16
8
1_555
C
CYS
24
B
CYS
3
8
1_555
C
CYS
27
B
CYS
6
8
1_555
C
HIS
32
B
HIS
11
8
1_555
C
CYS
37
B
CYS
16
8
1_555
N
CYS
3
A
CYS
3
8
1_555
N
CYS
6
A
CYS
6
8
1_555
N
HIS
11
A
HIS
11
8
1_555
N
CYS
16
A
CYS
16
8
1_555
1
P 1